---
_id: '5405'
abstract:
- lang: eng
  text: "The theory of graph games is the foundation for modeling and synthesizing
    reactive processes. In the synthesis of stochastic processes, we use 2-1/2-player
    games where some transitions of the game graph are controlled by two adversarial
    players, the System and the Environment, and the other transitions are determined
    probabilistically. We consider 2-1/2-player games where the objective of the System
    is the conjunction of a qualitative objective (specified as a parity condition)
    and a quantitative objective (specified as a mean-payoff condition). We establish
    that the problem of deciding whether the System can ensure that the probability
    to satisfy the mean-payoff parity objective is at least a given threshold is in
    NP ∩ coNP, matching the best known bound in the special case of 2-player games
    (where all transitions are deterministic) with only parity objectives, or with
    only mean-payoff objectives. We present an algorithm running\r\nin time O(d ·
    n^{2d}·MeanGame) to compute the set of almost-sure winning states from which the
    objective\r\ncan be ensured with probability 1, where n is the number of states
    of the game, d the number of priorities\r\nof the parity objective, and MeanGame
    is the complexity to compute the set of almost-sure winning states\r\nin 2-1/2-player
    mean-payoff games. Our results are useful in the synthesis of stochastic reactive
    systems\r\nwith both functional requirement (given as a qualitative objective)
    and performance requirement (given\r\nas a quantitative objective)."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
- first_name: Hugo
  full_name: Gimbert, Hugo
  last_name: Gimbert
- first_name: Youssouf
  full_name: Oualhadj, Youssouf
  last_name: Oualhadj
citation:
  ama: Chatterjee K, Doyen L, Gimbert H, Oualhadj Y. <i>Perfect-Information Stochastic
    Mean-Payoff Parity Games</i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">10.15479/AT:IST-2013-128-v1-1</a>
  apa: Chatterjee, K., Doyen, L., Gimbert, H., &#38; Oualhadj, Y. (2013). <i>Perfect-information
    stochastic mean-payoff parity games</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">https://doi.org/10.15479/AT:IST-2013-128-v1-1</a>
  chicago: Chatterjee, Krishnendu, Laurent Doyen, Hugo Gimbert, and Youssouf Oualhadj.
    <i>Perfect-Information Stochastic Mean-Payoff Parity Games</i>. IST Austria, 2013.
    <a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">https://doi.org/10.15479/AT:IST-2013-128-v1-1</a>.
  ieee: K. Chatterjee, L. Doyen, H. Gimbert, and Y. Oualhadj, <i>Perfect-information
    stochastic mean-payoff parity games</i>. IST Austria, 2013.
  ista: Chatterjee K, Doyen L, Gimbert H, Oualhadj Y. 2013. Perfect-information stochastic
    mean-payoff parity games, IST Austria, 22p.
  mla: Chatterjee, Krishnendu, et al. <i>Perfect-Information Stochastic Mean-Payoff
    Parity Games</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-128-v1-1">10.15479/AT:IST-2013-128-v1-1</a>.
  short: K. Chatterjee, L. Doyen, H. Gimbert, Y. Oualhadj, Perfect-Information Stochastic
    Mean-Payoff Parity Games, IST Austria, 2013.
date_created: 2018-12-12T11:39:09Z
date_published: 2013-07-08T00:00:00Z
date_updated: 2023-02-23T10:33:08Z
day: '08'
ddc:
- '000'
- '005'
- '510'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-128-v1-1
file:
- access_level: open_access
  checksum: ede787a10e74e4f7db302fab8f12f3ca
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:54Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5516'
  file_name: IST-2013-128-v1+1_full_stoch_mpp.pdf
  file_size: 387467
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '22'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '128'
related_material:
  record:
  - id: '2212'
    relation: later_version
    status: public
status: public
title: Perfect-information stochastic mean-payoff parity games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5406'
abstract:
- lang: eng
  text: 'We consider the distributed synthesis problem fortemporal logic specifications.
    Traditionally, the problem has been studied for LTL, and the previous results
    show that the problem is decidable iff there is no information fork in the architecture.
    We consider the problem for fragments of LTLand our main results are as follows:
    (1) We show that the problem is undecidable for architectures with information
    forks even for the fragment of LTL with temporal operators restricted to next
    and eventually. (2) For specifications restricted to globally along with non-nested
    next operators, we establish decidability (in EXPSPACE) for star architectures
    where the processes receive disjoint inputs, whereas we establish undecidability
    for architectures containing an information fork-meet structure. (3)Finally, we
    consider LTL without the next operator, and establish decidability (NEXPTIME-complete)
    for all architectures for a fragment that consists of a set of safety assumptions,
    and a set of guarantees where each guarantee is a safety, reachability, or liveness
    condition.'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
citation:
  ama: Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. <i>Distributed Synthesis
    for LTL Fragments</i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">10.15479/AT:IST-2013-130-v1-1</a>
  apa: Chatterjee, K., Henzinger, T. A., Otop, J., &#38; Pavlogiannis, A. (2013).
    <i>Distributed synthesis for LTL Fragments</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">https://doi.org/10.15479/AT:IST-2013-130-v1-1</a>
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, Jan Otop, and Andreas Pavlogiannis.
    <i>Distributed Synthesis for LTL Fragments</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">https://doi.org/10.15479/AT:IST-2013-130-v1-1</a>.
  ieee: K. Chatterjee, T. A. Henzinger, J. Otop, and A. Pavlogiannis, <i>Distributed
    synthesis for LTL Fragments</i>. IST Austria, 2013.
  ista: Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. 2013. Distributed synthesis
    for LTL Fragments, IST Austria, 11p.
  mla: Chatterjee, Krishnendu, et al. <i>Distributed Synthesis for LTL Fragments</i>.
    IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-130-v1-1">10.15479/AT:IST-2013-130-v1-1</a>.
  short: K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, Distributed Synthesis
    for LTL Fragments, IST Austria, 2013.
date_created: 2018-12-12T11:39:09Z
date_published: 2013-07-08T00:00:00Z
date_updated: 2023-02-21T17:01:26Z
day: '08'
ddc:
- '005'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:IST-2013-130-v1-1
file:
- access_level: open_access
  checksum: 855513ebaf6f72228800c5fdb522f93c
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:18Z
  date_updated: 2020-07-14T12:46:45Z
  file_id: '5540'
  file_name: IST-2013-130-v1+1_Distributed_Synthesis.pdf
  file_size: 467895
  relation: main_file
file_date_updated: 2020-07-14T12:46:45Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '11'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '130'
related_material:
  record:
  - id: '1376'
    relation: later_version
    status: public
status: public
title: Distributed synthesis for LTL Fragments
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5407'
abstract:
- lang: eng
  text: This document is created as a part of the project “Repository for Research
    Data at IST Austria”. It summarises the mandatory features, which need to be fulfilled
    to provide an institutional repository as a platform and also a service to the
    scientists at the institute. It also includes optional features, which would be
    of strong benefit for the scientists and would increase the usage of the repository,
    and hence the visibility of research at IST Austria.
author:
- first_name: Jana
  full_name: Porsche, Jana
  id: 3252EDC2-F248-11E8-B48F-1D18A9856A87
  last_name: Porsche
citation:
  ama: Porsche J. <i>Technical Requirements and Features</i>. IST Austria; 2013.
  apa: Porsche, J. (2013). <i>Technical requirements and features</i>. IST Austria.
  chicago: Porsche, Jana. <i>Technical Requirements and Features</i>. IST Austria,
    2013.
  ieee: J. Porsche, <i>Technical requirements and features</i>. IST Austria, 2013.
  ista: Porsche J. 2013. Technical requirements and features, IST Austria,p.
  mla: Porsche, Jana. <i>Technical Requirements and Features</i>. IST Austria, 2013.
  short: J. Porsche, Technical Requirements and Features, IST Austria, 2013.
date_created: 2018-12-12T11:39:09Z
date_published: 2013-07-13T00:00:00Z
date_updated: 2020-07-14T23:07:51Z
day: '13'
ddc:
- '020'
department:
- _id: E-Lib
file:
- access_level: open_access
  checksum: 9e4f9abf79a56f651f0012a34909880f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:02Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5463'
  file_name: IST-2013-135-v1+1_Features.pdf
  file_size: 90311
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication_status: published
publisher: IST Austria
pubrep_id: '135'
status: public
title: Technical requirements and features
type: report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5408'
abstract:
- lang: eng
  text: "We consider two-player partial-observation stochastic games where player
    1 has partial observation and player 2 has perfect observation. The winning condition
    we study are omega-regular conditions specified as parity objectives. The qualitative
    analysis problem given a partial-observation stochastic game and a parity objective
    asks whether  there is a strategy to ensure that the objective is satisfied with
    probability 1 (resp. positive probability). While the qualitative analysis problems
    are known to be undecidable even for very special cases of parity objectives,
    they were shown to be decidable in 2EXPTIME under finite-memory  strategies. We
    improve the complexity and show that the qualitative analysis problems for partial-observation
    stochastic parity games under finite-memory strategies are \r\nEXPTIME-complete;
    and also establish optimal (exponential) memory bounds for finite-memory strategies
    required for qualitative analysis. "
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
- first_name: Sumit
  full_name: Nain, Sumit
  last_name: Nain
- first_name: Moshe
  full_name: Vardi, Moshe
  last_name: Vardi
citation:
  ama: Chatterjee K, Doyen L, Nain S, Vardi M. <i>The Complexity of Partial-Observation
    Stochastic Parity Games with Finite-Memory Strategies</i>. IST Austria; 2013.
    doi:<a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">10.15479/AT:IST-2013-141-v1-1</a>
  apa: Chatterjee, K., Doyen, L., Nain, S., &#38; Vardi, M. (2013). <i>The complexity
    of partial-observation stochastic parity games with finite-memory strategies</i>.
    IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">https://doi.org/10.15479/AT:IST-2013-141-v1-1</a>
  chicago: Chatterjee, Krishnendu, Laurent Doyen, Sumit Nain, and Moshe Vardi. <i>The
    Complexity of Partial-Observation Stochastic Parity Games with Finite-Memory Strategies</i>.
    IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">https://doi.org/10.15479/AT:IST-2013-141-v1-1</a>.
  ieee: K. Chatterjee, L. Doyen, S. Nain, and M. Vardi, <i>The complexity of partial-observation
    stochastic parity games with finite-memory strategies</i>. IST Austria, 2013.
  ista: Chatterjee K, Doyen L, Nain S, Vardi M. 2013. The complexity of partial-observation
    stochastic parity games with finite-memory strategies, IST Austria, 17p.
  mla: Chatterjee, Krishnendu, et al. <i>The Complexity of Partial-Observation Stochastic
    Parity Games with Finite-Memory Strategies</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-141-v1-1">10.15479/AT:IST-2013-141-v1-1</a>.
  short: K. Chatterjee, L. Doyen, S. Nain, M. Vardi, The Complexity of Partial-Observation
    Stochastic Parity Games with Finite-Memory Strategies, IST Austria, 2013.
date_created: 2018-12-12T11:39:10Z
date_published: 2013-09-12T00:00:00Z
date_updated: 2023-02-23T10:33:11Z
day: '12'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-141-v1-1
file:
- access_level: open_access
  checksum: 226bc791124f8d3138379778ce834e86
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:16Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5477'
  file_name: IST-2013-141-v1+1_main-tech-rpt.pdf
  file_size: 300481
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '17'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '141'
related_material:
  record:
  - id: '2213'
    relation: later_version
    status: public
status: public
title: The complexity of partial-observation stochastic parity games with finite-memory
  strategies
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5409'
abstract:
- lang: eng
  text: "The edit distance between two (untimed) traces is the minimum cost of a sequence
    of edit operations (insertion, deletion, or substitution) needed to transform
    one trace to the other. Edit distances have been extensively studied in the untimed
    setting, and form the basis for approximate matching of sequences in different
    domains such as coding theory, parsing, and speech recognition. \r\nIn this paper,
    we lift the study of edit distances from untimed languages to the timed setting.
    We define an edit distance between timed words which incorporates both the edit
    distance between the untimed words and the absolute difference in timestamps.
    Our edit distance between two timed words is computable in polynomial time. Further,
    we show that the edit distance between a timed word and a timed language generated
    by a timed automaton, defined as the edit distance between the word and the closest
    word in the language, is PSPACE-complete. While computing the edit distance between
    two timed automata is undecidable, we show that the approximate version, where
    we decide if the edit distance between two timed automata is either less than
    a given parameter or more than delta away from the parameter, for delta>0, can
    be solved in exponential space and is EXPSPACE-hard. Our definitions and techniques
    can be generalized to the setting of hybrid systems, and we show analogous decidability
    results for rectangular automata."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
- first_name: Rupak
  full_name: Majumdar, Rupak
  last_name: Majumdar
citation:
  ama: Chatterjee K, Ibsen-Jensen R, Majumdar R. <i>Edit Distance for Timed Automata</i>.
    IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">10.15479/AT:IST-2013-144-v1-1</a>
  apa: Chatterjee, K., Ibsen-Jensen, R., &#38; Majumdar, R. (2013). <i>Edit distance
    for timed automata</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">https://doi.org/10.15479/AT:IST-2013-144-v1-1</a>
  chicago: Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Rupak Majumdar. <i>Edit
    Distance for Timed Automata</i>. IST Austria, 2013. <a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">https://doi.org/10.15479/AT:IST-2013-144-v1-1</a>.
  ieee: K. Chatterjee, R. Ibsen-Jensen, and R. Majumdar, <i>Edit distance for timed
    automata</i>. IST Austria, 2013.
  ista: Chatterjee K, Ibsen-Jensen R, Majumdar R. 2013. Edit distance for timed automata,
    IST Austria, 12p.
  mla: Chatterjee, Krishnendu, et al. <i>Edit Distance for Timed Automata</i>. IST
    Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-144-v1-1">10.15479/AT:IST-2013-144-v1-1</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, Edit Distance for Timed Automata,
    IST Austria, 2013.
date_created: 2018-12-12T11:39:10Z
date_published: 2013-10-30T00:00:00Z
date_updated: 2023-02-23T10:33:18Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-144-v1-1
file:
- access_level: open_access
  checksum: 0f7633081ba8299c543322f0ad08571f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:08Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5469'
  file_name: IST-2013-144-v1+1_main.pdf
  file_size: 336377
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '12'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '144'
related_material:
  record:
  - id: '2216'
    relation: later_version
    status: public
status: public
title: Edit distance for timed automata
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5410'
abstract:
- lang: eng
  text: "Board games, like Tic-Tac-Toe and CONNECT-4, play an important role not only
    in development of mathematical and logical skills, but also in emotional and social
    development. In this paper, we address the problem of generating targeted starting
    positions for such games. This can facilitate new approaches for bringing novice
    players to mastery, and also leads to discovery of interesting game variants.
    \r\nOur approach generates starting states of varying hardness levels for player
    1 in a two-player board game, given rules of the board game, the desired number
    of steps required for player 1 to win, and the expertise levels of the two players.
    Our approach leverages symbolic methods and iterative simulation to efficiently
    search the extremely large state space. We present experimental results that include
    discovery of states of varying hardness levels for several simple grid-based board
    games. Also, the presence of such states for standard game variants like Tic-Tac-Toe
    on board size 4x4 opens up new games to be played that have not been played for
    ages since the default start state is heavily biased. "
alternative_title:
- IST Austria Technical Report
author:
- first_name: Umair
  full_name: Ahmed, Umair
  last_name: Ahmed
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Sumit
  full_name: Gulwani, Sumit
  last_name: Gulwani
citation:
  ama: Ahmed U, Chatterjee K, Gulwani S. <i>Automatic Generation of Alternative Starting
    Positions for Traditional Board Games</i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">10.15479/AT:IST-2013-146-v1-1</a>
  apa: Ahmed, U., Chatterjee, K., &#38; Gulwani, S. (2013). <i>Automatic generation
    of alternative starting positions for traditional board games</i>. IST Austria.
    <a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">https://doi.org/10.15479/AT:IST-2013-146-v1-1</a>
  chicago: Ahmed, Umair, Krishnendu Chatterjee, and Sumit Gulwani. <i>Automatic Generation
    of Alternative Starting Positions for Traditional Board Games</i>. IST Austria,
    2013. <a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">https://doi.org/10.15479/AT:IST-2013-146-v1-1</a>.
  ieee: U. Ahmed, K. Chatterjee, and S. Gulwani, <i>Automatic generation of alternative
    starting positions for traditional board games</i>. IST Austria, 2013.
  ista: Ahmed U, Chatterjee K, Gulwani S. 2013. Automatic generation of alternative
    starting positions for traditional board games, IST Austria, 13p.
  mla: Ahmed, Umair, et al. <i>Automatic Generation of Alternative Starting Positions
    for Traditional Board Games</i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-146-v1-1">10.15479/AT:IST-2013-146-v1-1</a>.
  short: U. Ahmed, K. Chatterjee, S. Gulwani, Automatic Generation of Alternative
    Starting Positions for Traditional Board Games, IST Austria, 2013.
date_created: 2018-12-12T11:39:10Z
date_published: 2013-12-03T00:00:00Z
date_updated: 2023-02-23T10:00:50Z
day: '03'
ddc:
- '000'
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2013-146-v1-1
file:
- access_level: open_access
  checksum: 409f3aaaf1184e4057b89cbb449dac80
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:06Z
  date_updated: 2020-07-14T12:46:46Z
  file_id: '5528'
  file_name: IST-2013-146-v1+1_main.pdf
  file_size: 818189
  relation: main_file
file_date_updated: 2020-07-14T12:46:46Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '13'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '146'
related_material:
  record:
  - id: '1481'
    relation: later_version
    status: public
status: public
title: Automatic generation of alternative starting positions for traditional board
  games
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '5747'
article_processing_charge: No
author:
- first_name: Cezara
  full_name: Dragoi, Cezara
  id: 2B2B5ED0-F248-11E8-B48F-1D18A9856A87
  last_name: Dragoi
- first_name: Ashutosh
  full_name: Gupta, Ashutosh
  id: 335E5684-F248-11E8-B48F-1D18A9856A87
  last_name: Gupta
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: 'Dragoi C, Gupta A, Henzinger TA. Automatic Linearizability Proofs of Concurrent
    Objects with Cooperating Updates. In: <i>Computer Aided Verification</i>. Vol
    8044. CAV. Berlin, Heidelberg: Springer Berlin Heidelberg; 2013:174-190. doi:<a
    href="https://doi.org/10.1007/978-3-642-39799-8_11">10.1007/978-3-642-39799-8_11</a>'
  apa: 'Dragoi, C., Gupta, A., &#38; Henzinger, T. A. (2013). Automatic Linearizability
    Proofs of Concurrent Objects with Cooperating Updates. In <i>Computer Aided Verification</i>
    (Vol. 8044, pp. 174–190). Berlin, Heidelberg: Springer Berlin Heidelberg. <a href="https://doi.org/10.1007/978-3-642-39799-8_11">https://doi.org/10.1007/978-3-642-39799-8_11</a>'
  chicago: 'Dragoi, Cezara, Ashutosh Gupta, and Thomas A Henzinger. “Automatic Linearizability
    Proofs of Concurrent Objects with Cooperating Updates.” In <i>Computer Aided Verification</i>,
    8044:174–90. CAV. Berlin, Heidelberg: Springer Berlin Heidelberg, 2013. <a href="https://doi.org/10.1007/978-3-642-39799-8_11">https://doi.org/10.1007/978-3-642-39799-8_11</a>.'
  ieee: 'C. Dragoi, A. Gupta, and T. A. Henzinger, “Automatic Linearizability Proofs
    of Concurrent Objects with Cooperating Updates,” in <i>Computer Aided Verification</i>,
    vol. 8044, Berlin, Heidelberg: Springer Berlin Heidelberg, 2013, pp. 174–190.'
  ista: 'Dragoi C, Gupta A, Henzinger TA. 2013.Automatic Linearizability Proofs of
    Concurrent Objects with Cooperating Updates. In: Computer Aided Verification.
    vol. 8044, 174–190.'
  mla: Dragoi, Cezara, et al. “Automatic Linearizability Proofs of Concurrent Objects
    with Cooperating Updates.” <i>Computer Aided Verification</i>, vol. 8044, Springer
    Berlin Heidelberg, 2013, pp. 174–90, doi:<a href="https://doi.org/10.1007/978-3-642-39799-8_11">10.1007/978-3-642-39799-8_11</a>.
  short: C. Dragoi, A. Gupta, T.A. Henzinger, in:, Computer Aided Verification, Springer
    Berlin Heidelberg, Berlin, Heidelberg, 2013, pp. 174–190.
conference:
  end_date: 2013-07-19
  location: Saint Petersburg, Russia
  name: CAV 2013
  start_date: 2013-07-13
date_created: 2018-12-18T13:10:21Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2023-09-05T14:16:07Z
ddc:
- '005'
department:
- _id: ToHe
doi: 10.1007/978-3-642-39799-8_11
ec_funded: 1
file:
- access_level: open_access
  checksum: a901cc6b71db08b61c0d4c0cbacc6287
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-18T13:13:33Z
  date_updated: 2020-07-14T12:47:10Z
  file_id: '5748'
  file_name: 2013_CAV_Dragoi.pdf
  file_size: 236480
  relation: main_file
file_date_updated: 2020-07-14T12:47:10Z
has_accepted_license: '1'
intvolume: '      8044'
language:
- iso: eng
oa: 1
oa_version: None
page: 174-190
place: Berlin, Heidelberg
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Computer Aided Verification
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783642397981'
  - '9783642397998'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Berlin Heidelberg
pubrep_id: '195'
quality_controlled: '1'
scopus_import: '1'
series_title: CAV
status: public
title: Automatic Linearizability Proofs of Concurrent Objects with Cooperating Updates
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8044
year: '2013'
...
---
_id: '590'
abstract:
- lang: eng
  text: We present two methods of creating two orthogonally-polarized focal points
    at customizable relative locations. These schemes may be critical for enhancing
    entanglement sources and other applications.
alternative_title:
- Optics InfoBase Conference Papers
author:
- first_name: David
  full_name: Schmid, David
  last_name: Schmid
- first_name: Ting
  full_name: Huang, Ting-Yu
  last_name: Huang
- first_name: Radhika
  full_name: Dirks, Radhika
  last_name: Dirks
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: 'Schmid D, Huang T, Dirks R, Hosten O, Kwiat P. Polarization dependent focusing.
    In: OSA; 2013. doi:<a href="https://doi.org/10.1364/QIM.2013.W6.23">10.1364/QIM.2013.W6.23</a>'
  apa: 'Schmid, D., Huang, T., Dirks, R., Hosten, O., &#38; Kwiat, P. (2013). Polarization
    dependent focusing. Presented at the QIM: Quantum Information and Measurement,
    OSA. <a href="https://doi.org/10.1364/QIM.2013.W6.23">https://doi.org/10.1364/QIM.2013.W6.23</a>'
  chicago: Schmid, David, Ting Huang, Radhika Dirks, Onur Hosten, and Paul Kwiat.
    “Polarization Dependent Focusing.” OSA, 2013. <a href="https://doi.org/10.1364/QIM.2013.W6.23">https://doi.org/10.1364/QIM.2013.W6.23</a>.
  ieee: 'D. Schmid, T. Huang, R. Dirks, O. Hosten, and P. Kwiat, “Polarization dependent
    focusing,” presented at the QIM: Quantum Information and Measurement, 2013.'
  ista: 'Schmid D, Huang T, Dirks R, Hosten O, Kwiat P. 2013. Polarization dependent
    focusing. QIM: Quantum Information and Measurement, Optics InfoBase Conference
    Papers, .'
  mla: Schmid, David, et al. <i>Polarization Dependent Focusing</i>. OSA, 2013, doi:<a
    href="https://doi.org/10.1364/QIM.2013.W6.23">10.1364/QIM.2013.W6.23</a>.
  short: D. Schmid, T. Huang, R. Dirks, O. Hosten, P. Kwiat, in:, OSA, 2013.
conference:
  name: 'QIM: Quantum Information and Measurement'
date_created: 2018-12-11T11:47:22Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T08:05:10Z
day: '01'
doi: 10.1364/QIM.2013.W6.23
extern: 1
month: '01'
publication_status: published
publisher: OSA
publist_id: '7217'
quality_controlled: 0
status: public
title: Polarization dependent focusing
type: conference
year: '2013'
...
---
_id: '591'
abstract:
- lang: eng
  text: We present two methods for the precise independent focusing of orthogonal
    linear polarizations of light at arbitrary relative locations. Our first scheme
    uses a displaced lens in a polarization Sagnac interferometer to provide adjustable
    longitudinal and lateral focal displacements via simple geometry; the second uses
    uniaxial crystals to achieve the same effect in a compact collinear setup. We
    develop the theoretical applications and limitations of our schemes, and provide
    experimental confirmation of our calculations.
author:
- first_name: David
  full_name: Schmid, David
  last_name: Schmid
- first_name: Ting
  full_name: Huang, Ting-Yu
  last_name: Huang
- first_name: Shiraz
  full_name: Hazrat, Shiraz
  last_name: Hazrat
- first_name: Radhika
  full_name: Dirks, Radhika
  last_name: Dirks
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Stephan
  full_name: Quint, Stephan
  last_name: Quint
- first_name: Dickson
  full_name: Thian, Dickson
  last_name: Thian
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: Schmid D, Huang T, Hazrat S, et al. Adjustable and robust methods for polarization-dependent
    focusing. <i>Optics Express</i>. 2013;21(13):15538-15552. doi:<a href="https://doi.org/10.1364/OE.21.015538">10.1364/OE.21.015538</a>
  apa: Schmid, D., Huang, T., Hazrat, S., Dirks, R., Hosten, O., Quint, S., … Kwiat,
    P. (2013). Adjustable and robust methods for polarization-dependent focusing.
    <i>Optics Express</i>. Optical Society of America. <a href="https://doi.org/10.1364/OE.21.015538">https://doi.org/10.1364/OE.21.015538</a>
  chicago: Schmid, David, Ting Huang, Shiraz Hazrat, Radhika Dirks, Onur Hosten, Stephan
    Quint, Dickson Thian, and Paul Kwiat. “Adjustable and Robust Methods for Polarization-Dependent
    Focusing.” <i>Optics Express</i>. Optical Society of America, 2013. <a href="https://doi.org/10.1364/OE.21.015538">https://doi.org/10.1364/OE.21.015538</a>.
  ieee: D. Schmid <i>et al.</i>, “Adjustable and robust methods for polarization-dependent
    focusing,” <i>Optics Express</i>, vol. 21, no. 13. Optical Society of America,
    pp. 15538–15552, 2013.
  ista: Schmid D, Huang T, Hazrat S, Dirks R, Hosten O, Quint S, Thian D, Kwiat P.
    2013. Adjustable and robust methods for polarization-dependent focusing. Optics
    Express. 21(13), 15538–15552.
  mla: Schmid, David, et al. “Adjustable and Robust Methods for Polarization-Dependent
    Focusing.” <i>Optics Express</i>, vol. 21, no. 13, Optical Society of America,
    2013, pp. 15538–52, doi:<a href="https://doi.org/10.1364/OE.21.015538">10.1364/OE.21.015538</a>.
  short: D. Schmid, T. Huang, S. Hazrat, R. Dirks, O. Hosten, S. Quint, D. Thian,
    P. Kwiat, Optics Express 21 (2013) 15538–15552.
date_created: 2018-12-11T11:47:22Z
date_published: 2013-07-01T00:00:00Z
date_updated: 2021-01-12T08:05:12Z
day: '01'
doi: 10.1364/OE.21.015538
extern: 1
intvolume: '        21'
issue: '13'
month: '07'
page: 15538 - 15552
publication: Optics Express
publication_status: published
publisher: Optical Society of America
publist_id: '7218'
quality_controlled: 0
status: public
title: Adjustable and robust methods for polarization-dependent focusing
type: journal_article
volume: 21
year: '2013'
...
---
_id: '5920'
abstract:
- lang: eng
  text: We study chains of lattice ideals that are invariant under a symmetric group
    action. In our setting, the ambient rings for these ideals are polynomial rings
    which are increasing in (Krull) dimension. Thus, these chains will fail to stabilize
    in the traditional commutative algebra sense. However, we prove a theorem which
    says that “up to the action of the group”, these chains locally stabilize. We
    also give an algorithm, which we have implemented in software, for explicitly
    constructing these stabilization generators for a family of Laurent toric ideals
    involved in applications to algebraic statistics. We close with several open problems
    and conjectures arising from our theoretical and computational investigations.
article_processing_charge: No
article_type: original
author:
- first_name: Christopher J.
  full_name: Hillar, Christopher J.
  last_name: Hillar
- first_name: Abraham
  full_name: Martin del Campo Sanchez, Abraham
  id: 4CF47F6A-F248-11E8-B48F-1D18A9856A87
  last_name: Martin del Campo Sanchez
citation:
  ama: Hillar CJ, Martin del Campo Sanchez A. Finiteness theorems and algorithms for
    permutation invariant chains of Laurent lattice ideals. <i>Journal of Symbolic
    Computation</i>. 2013;50:314-334. doi:<a href="https://doi.org/10.1016/j.jsc.2012.06.006">10.1016/j.jsc.2012.06.006</a>
  apa: Hillar, C. J., &#38; Martin del Campo Sanchez, A. (2013). Finiteness theorems
    and algorithms for permutation invariant chains of Laurent lattice ideals. <i>Journal
    of Symbolic Computation</i>. Elsevier. <a href="https://doi.org/10.1016/j.jsc.2012.06.006">https://doi.org/10.1016/j.jsc.2012.06.006</a>
  chicago: Hillar, Christopher J., and Abraham Martin del Campo Sanchez. “Finiteness
    Theorems and Algorithms for Permutation Invariant Chains of Laurent Lattice Ideals.”
    <i>Journal of Symbolic Computation</i>. Elsevier, 2013. <a href="https://doi.org/10.1016/j.jsc.2012.06.006">https://doi.org/10.1016/j.jsc.2012.06.006</a>.
  ieee: C. J. Hillar and A. Martin del Campo Sanchez, “Finiteness theorems and algorithms
    for permutation invariant chains of Laurent lattice ideals,” <i>Journal of Symbolic
    Computation</i>, vol. 50. Elsevier, pp. 314–334, 2013.
  ista: Hillar CJ, Martin del Campo Sanchez A. 2013. Finiteness theorems and algorithms
    for permutation invariant chains of Laurent lattice ideals. Journal of Symbolic
    Computation. 50, 314–334.
  mla: Hillar, Christopher J., and Abraham Martin del Campo Sanchez. “Finiteness Theorems
    and Algorithms for Permutation Invariant Chains of Laurent Lattice Ideals.” <i>Journal
    of Symbolic Computation</i>, vol. 50, Elsevier, 2013, pp. 314–34, doi:<a href="https://doi.org/10.1016/j.jsc.2012.06.006">10.1016/j.jsc.2012.06.006</a>.
  short: C.J. Hillar, A. Martin del Campo Sanchez, Journal of Symbolic Computation
    50 (2013) 314–334.
date_created: 2019-02-05T08:48:24Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2021-01-12T08:05:15Z
day: '01'
doi: 10.1016/j.jsc.2012.06.006
extern: '1'
intvolume: '        50'
language:
- iso: eng
month: '03'
oa_version: None
page: 314-334
publication: Journal of Symbolic Computation
publication_identifier:
  issn:
  - 0747-7171
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1016/j.jsc.2015.09.002
status: public
title: Finiteness theorems and algorithms for permutation invariant chains of Laurent
  lattice ideals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2013'
...
---
_id: '595'
article_processing_charge: No
author:
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
- first_name: Patrick
  full_name: Cramer, Patrick
  last_name: Cramer
citation:
  ama: 'Bernecky C, Cramer P. Struggling to let go: A non-coding RNA directs its own
    extension and destruction. <i>EMBO Journal</i>. 2013;32(6):771-772. doi:<a href="https://doi.org/10.1038/emboj.2013.36">10.1038/emboj.2013.36</a>'
  apa: 'Bernecky, C., &#38; Cramer, P. (2013). Struggling to let go: A non-coding
    RNA directs its own extension and destruction. <i>EMBO Journal</i>. Wiley-Blackwell.
    <a href="https://doi.org/10.1038/emboj.2013.36">https://doi.org/10.1038/emboj.2013.36</a>'
  chicago: 'Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding
    RNA Directs Its Own Extension and Destruction.” <i>EMBO Journal</i>. Wiley-Blackwell,
    2013. <a href="https://doi.org/10.1038/emboj.2013.36">https://doi.org/10.1038/emboj.2013.36</a>.'
  ieee: 'C. Bernecky and P. Cramer, “Struggling to let go: A non-coding RNA directs
    its own extension and destruction,” <i>EMBO Journal</i>, vol. 32, no. 6. Wiley-Blackwell,
    pp. 771–772, 2013.'
  ista: 'Bernecky C, Cramer P. 2013. Struggling to let go: A non-coding RNA directs
    its own extension and destruction. EMBO Journal. 32(6), 771–772.'
  mla: 'Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding
    RNA Directs Its Own Extension and Destruction.” <i>EMBO Journal</i>, vol. 32,
    no. 6, Wiley-Blackwell, 2013, pp. 771–72, doi:<a href="https://doi.org/10.1038/emboj.2013.36">10.1038/emboj.2013.36</a>.'
  short: C. Bernecky, P. Cramer, EMBO Journal 32 (2013) 771–772.
date_created: 2018-12-11T11:47:23Z
date_published: 2013-03-20T00:00:00Z
date_updated: 2021-01-12T08:05:20Z
day: '20'
doi: 10.1038/emboj.2013.36
extern: '1'
intvolume: '        32'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3604726/
month: '03'
oa: 1
oa_version: None
page: 771 - 772
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7207'
status: public
title: 'Struggling to let go: A non-coding RNA directs its own extension and destruction'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2013'
...
---
_id: '6128'
abstract:
- lang: eng
  text: Different interoceptive systems must be integrated to ensure that multiple
    homeostatic insults evoke appropriate behavioral and physiological responses.
    Little is known about how this is achieved. Using C. elegans, we dissect cross-modulation
    between systems that monitor temperature, O2 and CO2. CO2 is less aversive to
    animals acclimated to 15°C than those grown at 22°C. This difference requires
    the AFD neurons, which respond to both temperature and CO2 changes. CO2 evokes
    distinct AFD Ca2+ responses in animals acclimated at 15°C or 22°C. Mutants defective
    in synaptic transmission can reprogram AFD CO2 responses according to temperature
    experience, suggesting reprogramming occurs cell autonomously. AFD is exquisitely
    sensitive to CO2. Surprisingly, gradients of 0.01% CO2/second evoke very different
    Ca2+ responses from gradients of 0.04% CO2/second. Ambient O2 provides further
    contextual modulation of CO2 avoidance. At 21% O2 tonic signalling from the O2-sensing
    neuron URX inhibits CO2 avoidance. This inhibition can be graded according to
    O2 levels. In a natural wild isolate, a switch from 21% to 19% O2 is sufficient
    to convert CO2 from a neutral to an aversive cue. This sharp tuning is conferred
    partly by the neuroglobin GLB-5. The modulatory effects of O2 on CO2 avoidance
    involve the RIA interneurons, which are post-synaptic to URX and exhibit CO2-evoked
    Ca2+ responses. Ambient O2 and acclimation temperature act combinatorially to
    modulate CO2 responsiveness. Our work highlights the integrated architecture of
    homeostatic responses in C. elegans.
article_number: e1004011
author:
- first_name: Eiji
  full_name: Kodama-Namba, Eiji
  last_name: Kodama-Namba
- first_name: Lorenz A.
  full_name: Fenk, Lorenz A.
  last_name: Fenk
- first_name: Andrew J.
  full_name: Bretscher, Andrew J.
  last_name: Bretscher
- first_name: Einav
  full_name: Gross, Einav
  last_name: Gross
- first_name: K. Emanuel
  full_name: Busch, K. Emanuel
  last_name: Busch
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Kodama-Namba E, Fenk LA, Bretscher AJ, Gross E, Busch KE, de Bono M. Cross-modulation
    of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans.
    <i>PLoS Genetics</i>. 2013;9(12). doi:<a href="https://doi.org/10.1371/journal.pgen.1004011">10.1371/journal.pgen.1004011</a>
  apa: Kodama-Namba, E., Fenk, L. A., Bretscher, A. J., Gross, E., Busch, K. E., &#38;
    de Bono, M. (2013). Cross-modulation of homeostatic responses to temperature,
    oxygen and carbon dioxide in C. elegans. <i>PLoS Genetics</i>. Public Library
    of Science (PLoS). <a href="https://doi.org/10.1371/journal.pgen.1004011">https://doi.org/10.1371/journal.pgen.1004011</a>
  chicago: Kodama-Namba, Eiji, Lorenz A. Fenk, Andrew J. Bretscher, Einav Gross, K.
    Emanuel Busch, and Mario de Bono. “Cross-Modulation of Homeostatic Responses to
    Temperature, Oxygen and Carbon Dioxide in C. Elegans.” <i>PLoS Genetics</i>. Public
    Library of Science (PLoS), 2013. <a href="https://doi.org/10.1371/journal.pgen.1004011">https://doi.org/10.1371/journal.pgen.1004011</a>.
  ieee: E. Kodama-Namba, L. A. Fenk, A. J. Bretscher, E. Gross, K. E. Busch, and M.
    de Bono, “Cross-modulation of homeostatic responses to temperature, oxygen and
    carbon dioxide in C. elegans,” <i>PLoS Genetics</i>, vol. 9, no. 12. Public Library
    of Science (PLoS), 2013.
  ista: Kodama-Namba E, Fenk LA, Bretscher AJ, Gross E, Busch KE, de Bono M. 2013.
    Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide
    in C. elegans. PLoS Genetics. 9(12), e1004011.
  mla: Kodama-Namba, Eiji, et al. “Cross-Modulation of Homeostatic Responses to Temperature,
    Oxygen and Carbon Dioxide in C. Elegans.” <i>PLoS Genetics</i>, vol. 9, no. 12,
    e1004011, Public Library of Science (PLoS), 2013, doi:<a href="https://doi.org/10.1371/journal.pgen.1004011">10.1371/journal.pgen.1004011</a>.
  short: E. Kodama-Namba, L.A. Fenk, A.J. Bretscher, E. Gross, K.E. Busch, M. de Bono,
    PLoS Genetics 9 (2013).
date_created: 2019-03-19T14:58:51Z
date_published: 2013-12-19T00:00:00Z
date_updated: 2021-01-12T08:06:15Z
day: '19'
ddc:
- '570'
doi: 10.1371/journal.pgen.1004011
extern: '1'
external_id:
  pmid:
  - '24385919'
file:
- access_level: open_access
  checksum: 299b6321be79931c7c17c5db6e69c711
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-19T15:14:51Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '6129'
  file_name: 2013_PLOS_Kodama-Namba.PDF
  file_size: 4499039
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: '         9'
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science (PLoS)
quality_controlled: '1'
status: public
title: Cross-modulation of homeostatic responses to temperature, oxygen and carbon
  dioxide in C. elegans
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2013'
...
---
_id: '6130'
abstract:
- lang: eng
  text: 'Cas9 is an RNA-guided double-stranded DNA nuclease that participates in clustered
    regularly interspaced short palindromic repeats (CRISPR)-mediated adaptive immunity
    in prokaryotes. CRISPR–Cas9 has recently been used to generate insertion and deletion
    mutations in Caenorhabditis elegans, but not to create tailored changes (knock-ins).
    We show that the CRISPR–CRISPR-associated (Cas) system can be adapted for efficient
    and precise editing of the C. elegans genome. The targeted double-strand breaks
    generated by CRISPR are substrates for transgene-instructed gene conversion. This
    allows customized changes in the C. elegans genome by homologous recombination:
    sequences contained in the repair template (the transgene) are copied by gene
    conversion into the genome. The possibility to edit the C. elegans genome at selected
    locations will facilitate the systematic study of gene function in this widely
    used model organism.'
article_number: e193
author:
- first_name: Changchun
  full_name: Chen, Changchun
  last_name: Chen
- first_name: Lorenz A.
  full_name: Fenk, Lorenz A.
  last_name: Fenk
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Chen C, Fenk LA, de Bono M. Efficient genome editing in Caenorhabditis elegans
    by CRISPR-targeted homologous recombination. <i>Nucleic Acids Research</i>. 2013;41(20).
    doi:<a href="https://doi.org/10.1093/nar/gkt805">10.1093/nar/gkt805</a>
  apa: Chen, C., Fenk, L. A., &#38; de Bono, M. (2013). Efficient genome editing in
    Caenorhabditis elegans by CRISPR-targeted homologous recombination. <i>Nucleic
    Acids Research</i>. Oxford University Press. <a href="https://doi.org/10.1093/nar/gkt805">https://doi.org/10.1093/nar/gkt805</a>
  chicago: Chen, Changchun, Lorenz A. Fenk, and Mario de Bono. “Efficient Genome Editing
    in Caenorhabditis Elegans by CRISPR-Targeted Homologous Recombination.” <i>Nucleic
    Acids Research</i>. Oxford University Press, 2013. <a href="https://doi.org/10.1093/nar/gkt805">https://doi.org/10.1093/nar/gkt805</a>.
  ieee: C. Chen, L. A. Fenk, and M. de Bono, “Efficient genome editing in Caenorhabditis
    elegans by CRISPR-targeted homologous recombination,” <i>Nucleic Acids Research</i>,
    vol. 41, no. 20. Oxford University Press, 2013.
  ista: Chen C, Fenk LA, de Bono M. 2013. Efficient genome editing in Caenorhabditis
    elegans by CRISPR-targeted homologous recombination. Nucleic Acids Research. 41(20),
    e193.
  mla: Chen, Changchun, et al. “Efficient Genome Editing in Caenorhabditis Elegans
    by CRISPR-Targeted Homologous Recombination.” <i>Nucleic Acids Research</i>, vol.
    41, no. 20, e193, Oxford University Press, 2013, doi:<a href="https://doi.org/10.1093/nar/gkt805">10.1093/nar/gkt805</a>.
  short: C. Chen, L.A. Fenk, M. de Bono, Nucleic Acids Research 41 (2013).
date_created: 2019-03-19T15:17:40Z
date_published: 2013-11-01T00:00:00Z
date_updated: 2021-01-12T08:06:16Z
day: '01'
ddc:
- '570'
doi: 10.1093/nar/gkt805
extern: '1'
external_id:
  pmid:
  - '24013562'
file:
- access_level: open_access
  checksum: 0f1f127cefd043cb922b292e1cd16f02
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-19T15:25:42Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '6131'
  file_name: 2013_OUP_Chen.pdf
  file_size: 340225
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: '        41'
issue: '20'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nucleic Acids Research
publication_identifier:
  issn:
  - 1362-4962
  - 0305-1048
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous
  recombination
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 41
year: '2013'
...
---
_id: '6132'
author:
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: W.R.
  full_name: Schafer, W.R.
  last_name: Schafer
- first_name: A.
  full_name: Gottschalk, A.
  last_name: Gottschalk
citation:
  ama: 'de Bono M, Schafer WR, Gottschalk A. Optogenetic actuation, inhibition, modulation
    and readout for neuronal networks generating behavior in the nematode Caenorhabditis
    elegans. In: Hegemann P, Sigrist S, eds. <i>Optogenetics</i>. Walter de Gruyter;
    2013:61-78.'
  apa: de Bono, M., Schafer, W. R., &#38; Gottschalk, A. (2013). Optogenetic actuation,
    inhibition, modulation and readout for neuronal networks generating behavior in
    the nematode Caenorhabditis elegans. In P. Hegemann &#38; S. Sigrist (Eds.), <i>Optogenetics</i>
    (pp. 61–78). Walter de Gruyter.
  chicago: Bono, Mario de, W.R. Schafer, and A. Gottschalk. “Optogenetic Actuation,
    Inhibition, Modulation and Readout for Neuronal Networks Generating Behavior in
    the Nematode Caenorhabditis Elegans.” In <i>Optogenetics</i>, edited by Peter
    Hegemann and Stephan Sigrist, 61–78. Walter de Gruyter, 2013.
  ieee: M. de Bono, W. R. Schafer, and A. Gottschalk, “Optogenetic actuation, inhibition,
    modulation and readout for neuronal networks generating behavior in the nematode
    Caenorhabditis elegans,” in <i>Optogenetics</i>, P. Hegemann and S. Sigrist, Eds.
    Walter de Gruyter, 2013, pp. 61–78.
  ista: 'de Bono M, Schafer WR, Gottschalk A. 2013.Optogenetic actuation, inhibition,
    modulation and readout for neuronal networks generating behavior in the nematode
    Caenorhabditis elegans. In: Optogenetics. , 61–78.'
  mla: de Bono, Mario, et al. “Optogenetic Actuation, Inhibition, Modulation and Readout
    for Neuronal Networks Generating Behavior in the Nematode Caenorhabditis Elegans.”
    <i>Optogenetics</i>, edited by Peter Hegemann and Stephan Sigrist, Walter de Gruyter,
    2013, pp. 61–78.
  short: M. de Bono, W.R. Schafer, A. Gottschalk, in:, P. Hegemann, S. Sigrist (Eds.),
    Optogenetics, Walter de Gruyter, 2013, pp. 61–78.
date_created: 2019-03-20T13:54:05Z
date_published: 2013-08-28T00:00:00Z
date_updated: 2021-01-12T08:06:16Z
day: '28'
editor:
- first_name: Peter
  full_name: Hegemann, Peter
  last_name: Hegemann
- first_name: Stephan
  full_name: Sigrist, Stephan
  last_name: Sigrist
extern: '1'
language:
- iso: eng
month: '08'
oa_version: None
page: 61-78
publication: Optogenetics
publication_identifier:
  isbn:
  - 9783110270723; 9783110270716
publication_status: published
publisher: Walter de Gruyter
quality_controlled: '1'
status: public
title: Optogenetic actuation, inhibition, modulation and readout for neuronal networks
  generating behavior in the nematode Caenorhabditis elegans
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '6133'
abstract:
- lang: eng
  text: cGMP signaling is widespread in the nervous system. However, it has proved
    difficult to visualize and genetically probe endogenously evoked cGMP dynamics
    in neurons in vivo. Here, we combine cGMP and Ca2+ biosensors to image and dissect
    a cGMP signaling network in a Caenorhabditis elegans oxygen-sensing neuron. We
    show that a rise in O2 can evoke a tonic increase in cGMP that requires an atypical
    O2-binding soluble guanylate cyclase and that is sustained until oxygen levels
    fall. Increased cGMP leads to a sustained Ca2+ response in the neuron that depends
    on cGMP-gated ion channels. Elevated levels of cGMP and Ca2+ stimulate competing
    negative feedback loops that shape cGMP dynamics. Ca2+-dependent negative feedback
    loops, including activation of phosphodiesterase-1 (PDE-1), dampen the rise of
    cGMP. A different negative feedback loop, mediated by phosphodiesterase-2 (PDE-2)
    and stimulated by cGMP-dependent kinase (PKG), unexpectedly promotes cGMP accumulation
    following a rise in O2, apparently by keeping in check gating of cGMP channels
    and limiting activation of Ca2+-dependent negative feedback loops. Simultaneous
    imaging of Ca2+ and cGMP suggests that cGMP levels can rise close to cGMP channels
    while falling elsewhere. O2-evoked cGMP and Ca2+ responses are highly reproducible
    when the same neuron in an individual animal is stimulated repeatedly, suggesting
    that cGMP transduction has high intrinsic reliability. However, responses vary
    substantially across individuals, despite animals being genetically identical
    and similarly reared. This variability may reflect stochastic differences in expression
    of cGMP signaling components. Our work provides in vivo insights into the architecture
    of neuronal cGMP signaling.
author:
- first_name: A.
  full_name: Couto, A.
  last_name: Couto
- first_name: S.
  full_name: Oda, S.
  last_name: Oda
- first_name: V. O.
  full_name: Nikolaev, V. O.
  last_name: Nikolaev
- first_name: Z.
  full_name: Soltesz, Z.
  last_name: Soltesz
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Couto A, Oda S, Nikolaev VO, Soltesz Z, de Bono M. In vivo genetic dissection
    of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor. <i>Proceedings
    of the National Academy of Sciences</i>. 2013;110(35):E3301-E3310. doi:<a href="https://doi.org/10.1073/pnas.1217428110">10.1073/pnas.1217428110</a>
  apa: Couto, A., Oda, S., Nikolaev, V. O., Soltesz, Z., &#38; de Bono, M. (2013).
    In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans
    gas sensor. <i>Proceedings of the National Academy of Sciences</i>. Proceedings
    of the National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.1217428110">https://doi.org/10.1073/pnas.1217428110</a>
  chicago: Couto, A., S. Oda, V. O. Nikolaev, Z. Soltesz, and Mario de Bono. “In Vivo
    Genetic Dissection of O2-Evoked CGMP Dynamics in a Caenorhabditis Elegans Gas
    Sensor.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of
    the National Academy of Sciences, 2013. <a href="https://doi.org/10.1073/pnas.1217428110">https://doi.org/10.1073/pnas.1217428110</a>.
  ieee: A. Couto, S. Oda, V. O. Nikolaev, Z. Soltesz, and M. de Bono, “In vivo genetic
    dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor,”
    <i>Proceedings of the National Academy of Sciences</i>, vol. 110, no. 35. Proceedings
    of the National Academy of Sciences, pp. E3301–E3310, 2013.
  ista: Couto A, Oda S, Nikolaev VO, Soltesz Z, de Bono M. 2013. In vivo genetic dissection
    of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor. Proceedings
    of the National Academy of Sciences. 110(35), E3301–E3310.
  mla: Couto, A., et al. “In Vivo Genetic Dissection of O2-Evoked CGMP Dynamics in
    a Caenorhabditis Elegans Gas Sensor.” <i>Proceedings of the National Academy of
    Sciences</i>, vol. 110, no. 35, Proceedings of the National Academy of Sciences,
    2013, pp. E3301–10, doi:<a href="https://doi.org/10.1073/pnas.1217428110">10.1073/pnas.1217428110</a>.
  short: A. Couto, S. Oda, V.O. Nikolaev, Z. Soltesz, M. de Bono, Proceedings of the
    National Academy of Sciences 110 (2013) E3301–E3310.
date_created: 2019-03-20T14:05:06Z
date_published: 2013-08-27T00:00:00Z
date_updated: 2021-01-12T08:06:16Z
day: '27'
ddc:
- '570'
doi: 10.1073/pnas.1217428110
extern: '1'
external_id:
  pmid:
  - '23940325'
file:
- access_level: open_access
  checksum: 3ee28a694f74a49f0d098970ae391a91
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-03-20T14:07:53Z
  date_updated: 2020-07-14T12:47:20Z
  file_id: '6134'
  file_name: 2013_PNAS_Couto.pdf
  file_size: 2198763
  relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: '       110'
issue: '35'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: E3301-E3310
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  issn:
  - 0027-8424
  - 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
status: public
title: In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans
  gas sensor
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2013'
...
---
_id: '6135'
abstract:
- lang: eng
  text: Many organisms have stress response pathways, components of which share homology
    with players in complex human disease pathways. Research on stress response in
    the nematode worm Caenorhabditis elegans has provided detailed insights into the
    genetic and molecular mechanisms underlying complex human diseases. In this review
    we focus on four different types of environmental stress responses – heat shock,
    oxidative stress, hypoxia, and osmotic stress – and on how these can be used to
    study the genetics of complex human diseases. All four types of responses involve
    the genetic machineries that underlie a number of complex human diseases such
    as cancer and neurodegenerative diseases, including Alzheimer's and Parkinson's.
    We highlight the types of stress response experiments required to detect the genes
    and pathways underlying human disease and suggest that studying stress biology
    in worms can be translated to understanding human disease and provide potential
    targets for drug discovery.
author:
- first_name: Miriam
  full_name: Rodriguez, Miriam
  last_name: Rodriguez
- first_name: L. Basten
  full_name: Snoek, L. Basten
  last_name: Snoek
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
- first_name: Jan E.
  full_name: Kammenga, Jan E.
  last_name: Kammenga
citation:
  ama: 'Rodriguez M, Snoek LB, de Bono M, Kammenga JE. Worms under stress: C. elegans
    stress response and its relevance to complex human disease and aging. <i>Trends
    in Genetics</i>. 2013;29(6):367-374. doi:<a href="https://doi.org/10.1016/j.tig.2013.01.010">10.1016/j.tig.2013.01.010</a>'
  apa: 'Rodriguez, M., Snoek, L. B., de Bono, M., &#38; Kammenga, J. E. (2013). Worms
    under stress: C. elegans stress response and its relevance to complex human disease
    and aging. <i>Trends in Genetics</i>. Elsevier. <a href="https://doi.org/10.1016/j.tig.2013.01.010">https://doi.org/10.1016/j.tig.2013.01.010</a>'
  chicago: 'Rodriguez, Miriam, L. Basten Snoek, Mario de Bono, and Jan E. Kammenga.
    “Worms under Stress: C. Elegans Stress Response and Its Relevance to Complex Human
    Disease and Aging.” <i>Trends in Genetics</i>. Elsevier, 2013. <a href="https://doi.org/10.1016/j.tig.2013.01.010">https://doi.org/10.1016/j.tig.2013.01.010</a>.'
  ieee: 'M. Rodriguez, L. B. Snoek, M. de Bono, and J. E. Kammenga, “Worms under stress:
    C. elegans stress response and its relevance to complex human disease and aging,”
    <i>Trends in Genetics</i>, vol. 29, no. 6. Elsevier, pp. 367–374, 2013.'
  ista: 'Rodriguez M, Snoek LB, de Bono M, Kammenga JE. 2013. Worms under stress:
    C. elegans stress response and its relevance to complex human disease and aging.
    Trends in Genetics. 29(6), 367–374.'
  mla: 'Rodriguez, Miriam, et al. “Worms under Stress: C. Elegans Stress Response
    and Its Relevance to Complex Human Disease and Aging.” <i>Trends in Genetics</i>,
    vol. 29, no. 6, Elsevier, 2013, pp. 367–74, doi:<a href="https://doi.org/10.1016/j.tig.2013.01.010">10.1016/j.tig.2013.01.010</a>.'
  short: M. Rodriguez, L.B. Snoek, M. de Bono, J.E. Kammenga, Trends in Genetics 29
    (2013) 367–374.
date_created: 2019-03-20T14:17:42Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2021-01-12T08:06:17Z
day: '01'
doi: 10.1016/j.tig.2013.01.010
extern: '1'
intvolume: '        29'
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 367-374
publication: Trends in Genetics
publication_identifier:
  issn:
  - 0168-9525
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Worms under stress: C. elegans stress response and its relevance to complex
  human disease and aging'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2013'
...
---
_id: '6370'
abstract:
- lang: eng
  text: 'The molecular and supramolecular origins of the superior nonlinear optical
    (NLO) properties observed in the organic phenolic triene material, OH1 (2-(3-(4-hydroxystyryl)-5,5-dimethylcyclohex-2-enylidene)malononitrile),
    are presented. The molecular charge-transfer distribution is topographically mapped,
    demonstrating that a uniformly delocalized passive electronic medium facilitates
    the charge-transfer between the phenolic electron donor and the cyano electron
    acceptors which lie at opposite ends of the molecule. Its ability to act as a
    “push–pull” π-conjugated molecule is quantified, relative to similar materials,
    by supporting empirical calculations; these include bond-length alternation and
    harmonic-oscillator stabilization energy (HOSE) tests. Such tests, together with
    frontier molecular orbital considerations, reveal that OH1 can exist readily in
    its aromatic (neutral) or quinoidal (charge-separated) state, thereby overcoming
    the “nonlinearity-thermal stability trade-off”. The HOSE calculation also reveals
    a correlation between the quinoidal resonance contribution to the overall structure
    of OH1 and the UV–vis absorption peak wavelength in the wider family of configurationally
    locked polyene framework materials. Solid-state tensorial coefficients of the
    molecular dipole, polarizability, and the first hyperpolarizability for OH1 are
    derived from the first-, second-, and third-order electronic moments of the experimental
    charge-density distribution. The overall solid-state molecular dipole moment is
    compared with those from gas-phase calculations, revealing that crystal field
    effects are very significant in OH1. The solid-state hyperpolarizability derived
    from this charge-density study affords good agreement with gas-phase calculations
    as well as optical measurements based on hyper-Rayleigh scattering (HRS) and electric-field-induced
    second harmonic (EFISH) generation. This lends support to the further use of charge-density
    studies to calculate solid-state hyperpolarizability coefficients in other organic
    NLO materials. Finally, this charge-density study is also employed to provide
    an advanced classification of hydrogen bonds in OH1, which requires more stringent
    criteria than those from conventional structure analysis. As a result, only the
    strongest OH···NC interaction is so classified as a true hydrogen bond. Indeed,
    it is this electrostatic interaction that influences the molecular charge transfer:
    the other four, weaker, nonbonded contacts nonetheless affect the crystal packing.
    Overall, the establishment of these structure–property relationships lays a blueprint
    for designing further, more NLO efficient, materials in this industrially leading
    organic family of compounds.'
author:
- first_name: Tze-Chia
  full_name: Lin, Tze-Chia
  last_name: Lin
- first_name: Jacqueline M.
  full_name: Cole, Jacqueline M.
  last_name: Cole
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: Alison J.
  full_name: Edwards, Alison J.
  last_name: Edwards
- first_name: Ross O.
  full_name: Piltz, Ross O.
  last_name: Piltz
- first_name: Javier
  full_name: Pérez-Moreno, Javier
  last_name: Pérez-Moreno
- first_name: Ji-Youn
  full_name: Seo, Ji-Youn
  last_name: Seo
- first_name: Seung-Chul
  full_name: Lee, Seung-Chul
  last_name: Lee
- first_name: Koen
  full_name: Clays, Koen
  last_name: Clays
- first_name: O-Pil
  full_name: Kwon, O-Pil
  last_name: Kwon
citation:
  ama: 'Lin T-C, Cole JM, Higginbotham AP, et al. Molecular origins of the high-performance
    nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density
    distributions, hydrogen bonding, and ab initio calculations. <i>The Journal of
    Physical Chemistry C</i>. 2013;117(18):9416-9430. doi:<a href="https://doi.org/10.1021/jp400648q">10.1021/jp400648q</a>'
  apa: 'Lin, T.-C., Cole, J. M., Higginbotham, A. P., Edwards, A. J., Piltz, R. O.,
    Pérez-Moreno, J., … Kwon, O.-P. (2013). Molecular origins of the high-performance
    nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density
    distributions, hydrogen bonding, and ab initio calculations. <i>The Journal of
    Physical Chemistry C</i>. American Chemical Society (ACS). <a href="https://doi.org/10.1021/jp400648q">https://doi.org/10.1021/jp400648q</a>'
  chicago: 'Lin, Tze-Chia, Jacqueline M. Cole, Andrew P Higginbotham, Alison J. Edwards,
    Ross O. Piltz, Javier Pérez-Moreno, Ji-Youn Seo, Seung-Chul Lee, Koen Clays, and
    O-Pil Kwon. “Molecular Origins of the High-Performance Nonlinear Optical Susceptibility
    in a Phenolic Polyene Chromophore: Electron Density Distributions, Hydrogen Bonding,
    and Ab Initio Calculations.” <i>The Journal of Physical Chemistry C</i>. American
    Chemical Society (ACS), 2013. <a href="https://doi.org/10.1021/jp400648q">https://doi.org/10.1021/jp400648q</a>.'
  ieee: 'T.-C. Lin <i>et al.</i>, “Molecular origins of the high-performance nonlinear
    optical susceptibility in a phenolic polyene chromophore: Electron density distributions,
    hydrogen bonding, and ab initio calculations,” <i>The Journal of Physical Chemistry
    C</i>, vol. 117, no. 18. American Chemical Society (ACS), pp. 9416–9430, 2013.'
  ista: 'Lin T-C, Cole JM, Higginbotham AP, Edwards AJ, Piltz RO, Pérez-Moreno J,
    Seo J-Y, Lee S-C, Clays K, Kwon O-P. 2013. Molecular origins of the high-performance
    nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density
    distributions, hydrogen bonding, and ab initio calculations. The Journal of Physical
    Chemistry C. 117(18), 9416–9430.'
  mla: 'Lin, Tze-Chia, et al. “Molecular Origins of the High-Performance Nonlinear
    Optical Susceptibility in a Phenolic Polyene Chromophore: Electron Density Distributions,
    Hydrogen Bonding, and Ab Initio Calculations.” <i>The Journal of Physical Chemistry
    C</i>, vol. 117, no. 18, American Chemical Society (ACS), 2013, pp. 9416–30, doi:<a
    href="https://doi.org/10.1021/jp400648q">10.1021/jp400648q</a>.'
  short: T.-C. Lin, J.M. Cole, A.P. Higginbotham, A.J. Edwards, R.O. Piltz, J. Pérez-Moreno,
    J.-Y. Seo, S.-C. Lee, K. Clays, O.-P. Kwon, The Journal of Physical Chemistry
    C 117 (2013) 9416–9430.
date_created: 2019-05-03T09:40:31Z
date_published: 2013-05-09T00:00:00Z
date_updated: 2021-01-12T08:07:17Z
day: '09'
doi: 10.1021/jp400648q
extern: '1'
intvolume: '       117'
issue: '18'
language:
- iso: eng
month: '05'
oa_version: None
page: 9416-9430
publication: The Journal of Physical Chemistry C
publication_identifier:
  issn:
  - 1932-7447
  - 1932-7455
publication_status: published
publisher: American Chemical Society (ACS)
quality_controlled: '1'
status: public
title: 'Molecular origins of the high-performance nonlinear optical susceptibility
  in a phenolic polyene chromophore: Electron density distributions, hydrogen bonding,
  and ab initio calculations'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 117
year: '2013'
...
---
_id: '6440'
abstract:
- lang: eng
  text: In order to guarantee that each method of a data structure updates the logical
    state exactly once, al-most all non-blocking implementations employ Compare-And-Swap
    (CAS) based synchronization. For FIFO  queue  implementations  this  translates  into  concurrent  enqueue  or  dequeue  methods
    competing among themselves to update the same variable, the tail or the head,
    respectively, leading to high contention and poor scalability. Recent non-blocking
    queue implementations try to alleviate high contentionby increasing the number
    of contention points, all the while using CAS-based synchronization. Furthermore,
    obtaining a wait-free implementation with competition is achieved by additional
    synchronization which leads to further degradation of performance.In this paper
    we formalize the notion of competitiveness of a synchronizing statement which
    can beused as a measure for the scalability of concurrent implementations.  We
    present a new queue implementation, the Speculative Pairing (SP) queue, which,
    as we show, decreases competitiveness by using Fetch-And-Increment (FAI) instead
    of CAS. We prove that the SP queue is linearizable and lock-free.We also show
    that replacing CAS with FAI leads to wait-freedom for dequeue methods without
    an adverse effect on performance.  In fact, our experiments suggest that the SP
    queue can perform and scale better than the state-of-the-art queue implementations.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Hannes
  full_name: Payer, Hannes
  last_name: Payer
- first_name: Ali
  full_name: Sezgin, Ali
  id: 4C7638DA-F248-11E8-B48F-1D18A9856A87
  last_name: Sezgin
citation:
  ama: Henzinger TA, Payer H, Sezgin A. <i>Replacing Competition with Cooperation
    to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria; 2013. doi:<a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">10.15479/AT:IST-2013-124-v1-1</a>
  apa: Henzinger, T. A., Payer, H., &#38; Sezgin, A. (2013). <i>Replacing competition
    with cooperation to achieve scalable lock-free FIFO queues </i>. IST Austria.
    <a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>
  chicago: Henzinger, Thomas A, Hannes Payer, and Ali Sezgin. <i>Replacing Competition
    with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria,
    2013. <a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>.
  ieee: T. A. Henzinger, H. Payer, and A. Sezgin, <i>Replacing competition with cooperation
    to achieve scalable lock-free FIFO queues </i>. IST Austria, 2013.
  ista: Henzinger TA, Payer H, Sezgin A. 2013. Replacing competition with cooperation
    to achieve scalable lock-free FIFO queues , IST Austria, 23p.
  mla: Henzinger, Thomas A., et al. <i>Replacing Competition with Cooperation to Achieve
    Scalable Lock-Free FIFO Queues </i>. IST Austria, 2013, doi:<a href="https://doi.org/10.15479/AT:IST-2013-124-v1-1">10.15479/AT:IST-2013-124-v1-1</a>.
  short: T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation
    to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013.
date_created: 2019-05-13T14:13:27Z
date_published: 2013-06-13T00:00:00Z
date_updated: 2020-07-14T23:06:19Z
day: '13'
ddc:
- '000'
- '005'
department:
- _id: ToHe
doi: 10.15479/AT:IST-2013-124-v1-1
file:
- access_level: open_access
  checksum: a219ba4eada6cd62befed52262ee15d4
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-13T14:11:39Z
  date_updated: 2020-07-14T12:47:30Z
  file_id: '6441'
  file_name: 2013_TechRep_Henzinger.pdf
  file_size: 549684
  relation: main_file
file_date_updated: 2020-07-14T12:47:30Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '23'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '124'
status: public
title: 'Replacing competition with cooperation to achieve scalable lock-free FIFO
  queues '
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '1442'
abstract:
- lang: eng
  text: We give a cohomological interpretation of both the Kac polynomial and the
    refined Donaldson-Thomas-invariants of quivers. This interpretation yields a proof
    of a conjecture of Kac from 1982 and gives a new perspective on recent work of
    Kontsevich-Soibelman. Thisis achieved by computing, via an arithmetic Fourier
    transform, the dimensions of the isotypical components of the cohomology of associated
    Nakajima quiver varieties under the action of a Weyl group. The generating function
    of the corresponding Poincare polynomials is an extension of Hua's formula for
    Kac polynomials of quivers involving Hall-Littlewood symmetric functions. The
    resulting formulae contain a wide range of information on the geometry of the
    quiver varieties.
acknowledgement: |-
  The first author thanks the Royal Society for funding his research 2005-2012 in the form of a Royal Society University Research Fellowship as well as the Mathematical Institute and Wadham College in Oxford for a very productive environment. The second author is supported by Agence Nationale de la Recherche grant
  ANR-09-JCJC-0102-01. The third author is supported by the NSF grant DMS-1101484 and a Research Scholarship from the Clay Mathematical Institute.
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Emmanuel
  full_name: Letellier, Emmanuel
  last_name: Letellier
- first_name: Fernando
  full_name: Rodríguez Villegas, Fernando
  last_name: Rodríguez Villegas
citation:
  ama: Hausel T, Letellier E, Rodríguez Villegas F. Positivity for Kac polynomials
    and DT-invariants of quivers. <i>Annals of Mathematics</i>. 2013;177(3):1147-1168.
    doi:<a href="https://doi.org/10.4007/annals.2013.177.3.8">10.4007/annals.2013.177.3.8</a>
  apa: Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2013). Positivity
    for Kac polynomials and DT-invariants of quivers. <i>Annals of Mathematics</i>.
    Princeton University Press. <a href="https://doi.org/10.4007/annals.2013.177.3.8">https://doi.org/10.4007/annals.2013.177.3.8</a>
  chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Positivity
    for Kac Polynomials and DT-Invariants of Quivers.” <i>Annals of Mathematics</i>.
    Princeton University Press, 2013. <a href="https://doi.org/10.4007/annals.2013.177.3.8">https://doi.org/10.4007/annals.2013.177.3.8</a>.
  ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Positivity for Kac polynomials
    and DT-invariants of quivers,” <i>Annals of Mathematics</i>, vol. 177, no. 3.
    Princeton University Press, pp. 1147–1168, 2013.
  ista: Hausel T, Letellier E, Rodríguez Villegas F. 2013. Positivity for Kac polynomials
    and DT-invariants of quivers. Annals of Mathematics. 177(3), 1147–1168.
  mla: Hausel, Tamás, et al. “Positivity for Kac Polynomials and DT-Invariants of
    Quivers.” <i>Annals of Mathematics</i>, vol. 177, no. 3, Princeton University
    Press, 2013, pp. 1147–68, doi:<a href="https://doi.org/10.4007/annals.2013.177.3.8">10.4007/annals.2013.177.3.8</a>.
  short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Annals of Mathematics 177
    (2013) 1147–1168.
date_created: 2018-12-11T11:52:02Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:47Z
day: '01'
doi: 10.4007/annals.2013.177.3.8
extern: 1
intvolume: '       177'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1204.2375
month: '01'
oa: 1
page: 1147 - 1168
publication: Annals of Mathematics
publication_status: published
publisher: Princeton University Press
publist_id: '5754'
quality_controlled: 0
status: public
title: Positivity for Kac polynomials and DT-invariants of quivers
type: journal_article
volume: 177
year: '2013'
...
---
_id: '1443'
abstract:
- lang: eng
  text: 'Here we survey several results and conjectures on the cohomology of the total
    space of the Hitchin system: the moduli space of semi-stable rank n and degree
    d Higgs bundles on a complex algebraic curve C. The picture emerging is a dynamic
    mixture of ideas originating in theoretical physics such as gauge theory and mirror
    symmetry, Weil conjectures in arithmetic algebraic geometry, representation theory
    of finite groups of Lie type and Langlands duality in number theory.'
alternative_title:
- Advanced Lectures in Mathematics
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
citation:
  ama: 'Hausel T. Global topology of the Hitchin system. In: <i>Handbook of Moduli:
    Volume II</i>. Vol 25. International Press; 2013:29-70.'
  apa: 'Hausel, T. (2013). Global topology of the Hitchin system. In <i>Handbook of
    Moduli: Volume II</i> (Vol. 25, pp. 29–70). International Press.'
  chicago: 'Hausel, Tamás. “Global Topology of the Hitchin System.” In <i>Handbook
    of Moduli: Volume II</i>, 25:29–70. International Press, 2013.'
  ieee: 'T. Hausel, “Global topology of the Hitchin system,” in <i>Handbook of Moduli:
    Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.'
  ista: 'Hausel T. 2013.Global topology of the Hitchin system. In: Handbook of Moduli:
    Volume II. Advanced Lectures in Mathematics, vol. 25, 29–70.'
  mla: 'Hausel, Tamás. “Global Topology of the Hitchin System.” <i>Handbook of Moduli:
    Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.'
  short: 'T. Hausel, in:, Handbook of Moduli: Volume II, International Press, 2013,
    pp. 29–70.'
date_created: 2018-12-11T11:52:03Z
date_published: 2013-03-15T00:00:00Z
date_updated: 2021-01-12T06:50:47Z
day: '15'
extern: 1
intvolume: '        25'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1102.1717
month: '03'
oa: 1
page: 29 - 70
publication: 'Handbook of Moduli: Volume II'
publication_status: published
publisher: International Press
publist_id: '5753'
quality_controlled: 0
status: public
title: Global topology of the Hitchin system
type: book_chapter
volume: 25
year: '2013'
...
