---
_id: '2297'
abstract:
- lang: eng
  text: We present an overview of mathematical results on the low temperature properties
    of dilute quantum gases, which have been obtained in the past few years. The presentation
    includes a discussion of Bose-Einstein condensation, the excitation spectrum for
    trapped gases and its relation to superfluidity, as well as the appearance of
    quantized vortices in rotating systems. All these properties are intensely being
    studied in current experiments on cold atomic gases. We will give a description
    of the mathematics involved in understanding these phenomena, starting from the
    underlying many-body Schrödinger equation.
arxiv: 1
author:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: 'Seiringer R. Hot topics in cold gases: A mathematical physics perspective.
    <i>Japanese Journal of Mathematics</i>. 2013;8(2):185-232. doi:<a href="https://doi.org/10.1007/s11537-013-1264-5">10.1007/s11537-013-1264-5</a>'
  apa: 'Seiringer, R. (2013). Hot topics in cold gases: A mathematical physics perspective.
    <i>Japanese Journal of Mathematics</i>. Springer. <a href="https://doi.org/10.1007/s11537-013-1264-5">https://doi.org/10.1007/s11537-013-1264-5</a>'
  chicago: 'Seiringer, Robert. “Hot Topics in Cold Gases: A Mathematical Physics Perspective.”
    <i>Japanese Journal of Mathematics</i>. Springer, 2013. <a href="https://doi.org/10.1007/s11537-013-1264-5">https://doi.org/10.1007/s11537-013-1264-5</a>.'
  ieee: 'R. Seiringer, “Hot topics in cold gases: A mathematical physics perspective,”
    <i>Japanese Journal of Mathematics</i>, vol. 8, no. 2. Springer, pp. 185–232,
    2013.'
  ista: 'Seiringer R. 2013. Hot topics in cold gases: A mathematical physics perspective.
    Japanese Journal of Mathematics. 8(2), 185–232.'
  mla: 'Seiringer, Robert. “Hot Topics in Cold Gases: A Mathematical Physics Perspective.”
    <i>Japanese Journal of Mathematics</i>, vol. 8, no. 2, Springer, 2013, pp. 185–232,
    doi:<a href="https://doi.org/10.1007/s11537-013-1264-5">10.1007/s11537-013-1264-5</a>.'
  short: R. Seiringer, Japanese Journal of Mathematics 8 (2013) 185–232.
date_created: 2018-12-11T11:56:50Z
date_published: 2013-09-24T00:00:00Z
date_updated: 2021-01-12T06:56:36Z
day: '24'
department:
- _id: RoSe
doi: 10.1007/s11537-013-1264-5
external_id:
  arxiv:
  - '0908.3686'
intvolume: '         8'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/0908.3686
month: '09'
oa: 1
oa_version: Preprint
page: 185 - 232
publication: Japanese Journal of Mathematics
publication_status: published
publisher: Springer
publist_id: '4631'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Hot topics in cold gases: A mathematical physics perspective'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2013'
...
---
_id: '2298'
abstract:
- lang: eng
  text: "We present a shape analysis for programs that manipulate overlaid data structures
    which share sets of objects. The abstract domain contains Separation Logic formulas
    that (1) combine a per-object separating conjunction with a per-field separating
    conjunction and (2) constrain a set of variables interpreted as sets of objects.
    The definition of the abstract domain operators is based on a notion of homomorphism
    between formulas, viewed as graphs, used recently to define optimal decision procedures
    for fragments of the Separation Logic. Based on a Frame Rule that supports the
    two versions of the separating conjunction, the analysis is able to reason in
    a modular manner about non-overlaid data structures and then, compose information
    only at a few program points, e.g., procedure returns. We have implemented this
    analysis in a prototype tool and applied it on several interesting case studies
    that manipulate overlaid and nested linked lists.\r\n"
alternative_title:
- LNCS
author:
- first_name: Cezara
  full_name: Dragoi, Cezara
  id: 2B2B5ED0-F248-11E8-B48F-1D18A9856A87
  last_name: Dragoi
- first_name: Constantin
  full_name: Enea, Constantin
  last_name: Enea
- first_name: Mihaela
  full_name: Sighireanu, Mihaela
  last_name: Sighireanu
citation:
  ama: 'Dragoi C, Enea C, Sighireanu M. Local shape analysis for overlaid data structures.
    In: Vol 7935. Springer; 2013:150-171. doi:<a href="https://doi.org/10.1007/978-3-642-38856-9_10">10.1007/978-3-642-38856-9_10</a>'
  apa: 'Dragoi, C., Enea, C., &#38; Sighireanu, M. (2013). Local shape analysis for
    overlaid data structures (Vol. 7935, pp. 150–171). Presented at the SAS: Static
    Analysis Symposium, Seattle, WA, United States: Springer. <a href="https://doi.org/10.1007/978-3-642-38856-9_10">https://doi.org/10.1007/978-3-642-38856-9_10</a>'
  chicago: Dragoi, Cezara, Constantin Enea, and Mihaela Sighireanu. “Local Shape Analysis
    for Overlaid Data Structures,” 7935:150–71. Springer, 2013. <a href="https://doi.org/10.1007/978-3-642-38856-9_10">https://doi.org/10.1007/978-3-642-38856-9_10</a>.
  ieee: 'C. Dragoi, C. Enea, and M. Sighireanu, “Local shape analysis for overlaid
    data structures,” presented at the SAS: Static Analysis Symposium, Seattle, WA,
    United States, 2013, vol. 7935, pp. 150–171.'
  ista: 'Dragoi C, Enea C, Sighireanu M. 2013. Local shape analysis for overlaid data
    structures. SAS: Static Analysis Symposium, LNCS, vol. 7935, 150–171.'
  mla: Dragoi, Cezara, et al. <i>Local Shape Analysis for Overlaid Data Structures</i>.
    Vol. 7935, Springer, 2013, pp. 150–71, doi:<a href="https://doi.org/10.1007/978-3-642-38856-9_10">10.1007/978-3-642-38856-9_10</a>.
  short: C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2013, pp. 150–171.
conference:
  end_date: 2013-06-22
  location: Seattle, WA, United States
  name: 'SAS: Static Analysis Symposium'
  start_date: 2013-06-20
date_created: 2018-12-11T11:56:50Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:36Z
day: '01'
ddc:
- '000'
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-38856-9_10
ec_funded: 1
file:
- access_level: open_access
  checksum: 907edd33a5892e3af093365f1fd57ed7
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:36Z
  date_updated: 2020-07-14T12:45:37Z
  file_id: '4824'
  file_name: IST-2014-196-v1+1_sas13.pdf
  file_size: 299004
  relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: '      7935'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 150 - 171
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication_status: published
publisher: Springer
publist_id: '4630'
pubrep_id: '196'
quality_controlled: '1'
scopus_import: 1
status: public
title: Local shape analysis for overlaid data structures
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7935
year: '2013'
...
---
_id: '2299'
abstract:
- lang: eng
  text: 'The standard hardware design flow involves: (a) design of an integrated circuit
    using a hardware description language, (b) extensive functional and formal verification,
    and (c) logical synthesis. However, the above-mentioned processes consume significant
    effort and time. An alternative approach is to use a formal specification language
    as a high-level hardware description language and synthesize hardware from formal
    specifications. Our work is a case study of the synthesis of the widely and industrially
    used AMBA AHB protocol from formal specifications. Bloem et al. presented the
    first formal specifications for the AMBA AHB Arbiter and synthesized the AHB Arbiter
    circuit. However, in the first formal specification some important assumptions
    were missing. Our contributions are as follows: (a) We present detailed formal
    specifications for the AHB Arbiter incorporating the missing details, and obtain
    significant improvements in the synthesis results (both with respect to the number
    of gates in the synthesized circuit and with respect to the time taken to synthesize
    the circuit), and (b) we present formal specifications to generate compact circuits
    for the remaining two main components of AMBA AHB, namely, AHB Master and AHB
    Slave. Thus with systematic description we are able to automatically and completely
    synthesize an important and widely used industrial protocol.'
author:
- first_name: Yashdeep
  full_name: Godhal, Yashdeep
  id: 5B547124-EB61-11E9-8887-89D9C04DBDF5
  last_name: Godhal
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
citation:
  ama: 'Godhal Y, Chatterjee K, Henzinger TA. Synthesis of AMBA AHB from formal specification:
    A case study. <i>International Journal on Software Tools for Technology Transfer</i>.
    2013;15(5-6):585-601. doi:<a href="https://doi.org/10.1007/s10009-011-0207-9">10.1007/s10009-011-0207-9</a>'
  apa: 'Godhal, Y., Chatterjee, K., &#38; Henzinger, T. A. (2013). Synthesis of AMBA
    AHB from formal specification: A case study. <i>International Journal on Software
    Tools for Technology Transfer</i>. Springer. <a href="https://doi.org/10.1007/s10009-011-0207-9">https://doi.org/10.1007/s10009-011-0207-9</a>'
  chicago: 'Godhal, Yashdeep, Krishnendu Chatterjee, and Thomas A Henzinger. “Synthesis
    of AMBA AHB from Formal Specification: A Case Study.” <i>International Journal
    on Software Tools for Technology Transfer</i>. Springer, 2013. <a href="https://doi.org/10.1007/s10009-011-0207-9">https://doi.org/10.1007/s10009-011-0207-9</a>.'
  ieee: 'Y. Godhal, K. Chatterjee, and T. A. Henzinger, “Synthesis of AMBA AHB from
    formal specification: A case study,” <i>International Journal on Software Tools
    for Technology Transfer</i>, vol. 15, no. 5–6. Springer, pp. 585–601, 2013.'
  ista: 'Godhal Y, Chatterjee K, Henzinger TA. 2013. Synthesis of AMBA AHB from formal
    specification: A case study. International Journal on Software Tools for Technology
    Transfer. 15(5–6), 585–601.'
  mla: 'Godhal, Yashdeep, et al. “Synthesis of AMBA AHB from Formal Specification:
    A Case Study.” <i>International Journal on Software Tools for Technology Transfer</i>,
    vol. 15, no. 5–6, Springer, 2013, pp. 585–601, doi:<a href="https://doi.org/10.1007/s10009-011-0207-9">10.1007/s10009-011-0207-9</a>.'
  short: Y. Godhal, K. Chatterjee, T.A. Henzinger, International Journal on Software
    Tools for Technology Transfer 15 (2013) 585–601.
date_created: 2018-12-11T11:56:51Z
date_published: 2013-10-01T00:00:00Z
date_updated: 2021-01-12T06:56:37Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/s10009-011-0207-9
file:
- access_level: open_access
  checksum: 57b06a732dd8d6349190dba6b5b0d33b
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:53Z
  date_updated: 2020-07-14T12:45:37Z
  file_id: '4910'
  file_name: IST-2012-87-v1+1_Synthesis_of_AMBA_AHB_from_formal_specifications-_A_case_study.pdf
  file_size: 277372
  relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: '        15'
issue: 5-6
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 585 - 601
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: International Journal on Software Tools for Technology Transfer
publication_status: published
publisher: Springer
publist_id: '4629'
pubrep_id: '87'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Synthesis of AMBA AHB from formal specification: A case study'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2013'
...
---
_id: '2300'
abstract:
- lang: eng
  text: We consider Ising models in two and three dimensions with nearest neighbor
    ferromagnetic interactions and long-range, power law decaying, antiferromagnetic
    interactions. If the strength of the ferromagnetic coupling J is larger than a
    critical value Jc, then the ground state is homogeneous and ferromagnetic. As
    the critical value is approached from smaller values of J, it is believed that
    the ground state consists of a periodic array of stripes (d=2) or slabs (d=3),
    all of the same size and alternating magnetization. Here we prove rigorously that
    the ground state energy per site converges to that of the optimal periodic striped
    or slabbed state, in the limit that J tends to the ferromagnetic transition point.
    While this theorem does not prove rigorously that the ground state is precisely
    striped or slabbed, it does prove that in any suitably large box the ground state
    is striped or slabbed with high probability.
article_number: '064401'
arxiv: 1
author:
- first_name: Alessandro
  full_name: Giuliani, Alessandro
  last_name: Giuliani
- first_name: Élliott
  full_name: Lieb, Élliott
  last_name: Lieb
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Giuliani A, Lieb É, Seiringer R. Realization of stripes and slabs in two and
    three dimensions. <i>Physical Review B</i>. 2013;88(6). doi:<a href="https://doi.org/10.1103/PhysRevB.88.064401">10.1103/PhysRevB.88.064401</a>
  apa: Giuliani, A., Lieb, É., &#38; Seiringer, R. (2013). Realization of stripes
    and slabs in two and three dimensions. <i>Physical Review B</i>. American Physical
    Society. <a href="https://doi.org/10.1103/PhysRevB.88.064401">https://doi.org/10.1103/PhysRevB.88.064401</a>
  chicago: Giuliani, Alessandro, Élliott Lieb, and Robert Seiringer. “Realization
    of Stripes and Slabs in Two and Three Dimensions.” <i>Physical Review B</i>. American
    Physical Society, 2013. <a href="https://doi.org/10.1103/PhysRevB.88.064401">https://doi.org/10.1103/PhysRevB.88.064401</a>.
  ieee: A. Giuliani, É. Lieb, and R. Seiringer, “Realization of stripes and slabs
    in two and three dimensions,” <i>Physical Review B</i>, vol. 88, no. 6. American
    Physical Society, 2013.
  ista: Giuliani A, Lieb É, Seiringer R. 2013. Realization of stripes and slabs in
    two and three dimensions. Physical Review B. 88(6), 064401.
  mla: Giuliani, Alessandro, et al. “Realization of Stripes and Slabs in Two and Three
    Dimensions.” <i>Physical Review B</i>, vol. 88, no. 6, 064401, American Physical
    Society, 2013, doi:<a href="https://doi.org/10.1103/PhysRevB.88.064401">10.1103/PhysRevB.88.064401</a>.
  short: A. Giuliani, É. Lieb, R. Seiringer, Physical Review B 88 (2013).
date_created: 2018-12-11T11:56:51Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2021-01-12T06:56:38Z
day: '01'
department:
- _id: RoSe
doi: 10.1103/PhysRevB.88.064401
external_id:
  arxiv:
  - '1305.5323'
intvolume: '        88'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1305.5323
month: '08'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '4627'
quality_controlled: '1'
scopus_import: 1
status: public
title: Realization of stripes and slabs in two and three dimensions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 88
year: '2013'
...
---
_id: '2301'
abstract:
- lang: eng
  text: We describe the design and implementation of P, a domain-specific language
    to write asynchronous event driven code. P allows the programmer to specify the
    system as a collection of interacting state machines, which communicate with each
    other using events. P unifies modeling and programming into one activity for the
    programmer. Not only can a P program be compiled into executable code, but it
    can also be tested using model checking techniques. P allows the programmer to
    specify the environment, used to &quot;close&quot; the system during testing,
    as nondeterministic ghost machines. Ghost machines are erased during compilation
    to executable code; a type system ensures that the erasure is semantics preserving.
    The P language is designed so that a P program can be checked for responsiveness-the
    ability to handle every event in a timely manner. By default, a machine needs
    to handle every event that arrives in every state. But handling every event in
    every state is impractical. The language provides a notion of deferred events
    where the programmer can annotate when she wants to delay processing an event.
    The default safety checker looks for presence of unhan-dled events. The language
    also provides default liveness checks that an event cannot be potentially deferred
    forever. P was used to implement and verify the core of the USB device driver
    stack that ships with Microsoft Windows 8. The resulting driver is more reliable
    and performs better than its prior incarnation (which did not use P); we have
    more confidence in the robustness of its design due to the language abstractions
    and verification provided by P.
author:
- first_name: Ankush
  full_name: Desai, Ankush
  last_name: Desai
- first_name: Vivek
  full_name: Gupta, Vivek
  last_name: Gupta
- first_name: Ethan
  full_name: Jackson, Ethan
  last_name: Jackson
- first_name: Shaz
  full_name: Qadeer, Shaz
  last_name: Qadeer
- first_name: Sriram
  full_name: Rajamani, Sriram
  last_name: Rajamani
- first_name: Damien
  full_name: Zufferey, Damien
  id: 4397AC76-F248-11E8-B48F-1D18A9856A87
  last_name: Zufferey
  orcid: 0000-0002-3197-8736
citation:
  ama: 'Desai A, Gupta V, Jackson E, Qadeer S, Rajamani S, Zufferey D. P: Safe asynchronous
    event-driven programming. In: <i>Proceedings of the 34th ACM SIGPLAN Conference
    on Programming Language Design and Implementation</i>. ACM; 2013:321-331. doi:<a
    href="https://doi.org/10.1145/2491956.2462184">10.1145/2491956.2462184</a>'
  apa: 'Desai, A., Gupta, V., Jackson, E., Qadeer, S., Rajamani, S., &#38; Zufferey,
    D. (2013). P: Safe asynchronous event-driven programming. In <i>Proceedings of
    the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation</i>
    (pp. 321–331). Seattle, WA, United States: ACM. <a href="https://doi.org/10.1145/2491956.2462184">https://doi.org/10.1145/2491956.2462184</a>'
  chicago: 'Desai, Ankush, Vivek Gupta, Ethan Jackson, Shaz Qadeer, Sriram Rajamani,
    and Damien Zufferey. “P: Safe Asynchronous Event-Driven Programming.” In <i>Proceedings
    of the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation</i>,
    321–31. ACM, 2013. <a href="https://doi.org/10.1145/2491956.2462184">https://doi.org/10.1145/2491956.2462184</a>.'
  ieee: 'A. Desai, V. Gupta, E. Jackson, S. Qadeer, S. Rajamani, and D. Zufferey,
    “P: Safe asynchronous event-driven programming,” in <i>Proceedings of the 34th
    ACM SIGPLAN Conference on Programming Language Design and Implementation</i>,
    Seattle, WA, United States, 2013, pp. 321–331.'
  ista: 'Desai A, Gupta V, Jackson E, Qadeer S, Rajamani S, Zufferey D. 2013. P: Safe
    asynchronous event-driven programming. Proceedings of the 34th ACM SIGPLAN Conference
    on Programming Language Design and Implementation. PLDI: Programming Languages
    Design and Implementation, 321–331.'
  mla: 'Desai, Ankush, et al. “P: Safe Asynchronous Event-Driven Programming.” <i>Proceedings
    of the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation</i>,
    ACM, 2013, pp. 321–31, doi:<a href="https://doi.org/10.1145/2491956.2462184">10.1145/2491956.2462184</a>.'
  short: A. Desai, V. Gupta, E. Jackson, S. Qadeer, S. Rajamani, D. Zufferey, in:,
    Proceedings of the 34th ACM SIGPLAN Conference on Programming Language Design
    and Implementation, ACM, 2013, pp. 321–331.
conference:
  end_date: 2013-06-19
  location: Seattle, WA, United States
  name: 'PLDI: Programming Languages Design and Implementation'
  start_date: 2013-06-16
date_created: 2018-12-11T11:56:52Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2021-01-12T06:56:38Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2491956.2462184
ec_funded: 1
language:
- iso: eng
main_file_link:
- url: http://research.microsoft.com/pubs/191069/pldi212_desai.pdf
month: '06'
oa_version: None
page: 321 - 331
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication: Proceedings of the 34th ACM SIGPLAN Conference on Programming Language
  Design and Implementation
publication_status: published
publisher: ACM
publist_id: '4626'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'P: Safe asynchronous event-driven programming'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2303'
abstract:
- lang: eng
  text: MADM (Mosaic Analysis with Double Markers) technology offers a genetic approach
    in mice to visualize and concomitantly manipulate genetically defined cells at
    clonal level and single cell resolution. MADM employs Cre recombinase/loxP-dependent
    interchromosomal mitotic recombination to reconstitute two split marker genes—green
    GFP and red tdTomato—and can label sparse clones of homozygous mutant cells in
    one color and wild-type cells in the other color in an otherwise unlabeled background.
    At present, major MADM applications include lineage tracing, single cell labeling,
    conditional knockouts in small populations of cells and induction of uniparental
    chromosome disomy to assess effects of genomic imprinting. MADM can be applied
    universally in the mouse with the sole limitation being the specificity of the
    promoter controlling Cre recombinase expression. Here I review recent developments
    and extensions of the MADM technique and give an overview of the major discoveries
    and progresses enabled by the implementation of the novel genetic MADM tools.
acknowledgement: This work was supported by IST Austria institutional funds.
article_type: review
author:
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Hippenmeyer S. Dissection of gene function at clonal level using mosaic analysis
    with double markers. <i>Frontiers in Biology</i>. 2013;8(6):557-568. doi:<a href="https://doi.org/10.1007/s11515-013-1279-6">10.1007/s11515-013-1279-6</a>
  apa: Hippenmeyer, S. (2013). Dissection of gene function at clonal level using mosaic
    analysis with double markers. <i>Frontiers in Biology</i>. Springer. <a href="https://doi.org/10.1007/s11515-013-1279-6">https://doi.org/10.1007/s11515-013-1279-6</a>
  chicago: Hippenmeyer, Simon. “Dissection of Gene Function at Clonal Level Using
    Mosaic Analysis with Double Markers.” <i>Frontiers in Biology</i>. Springer, 2013.
    <a href="https://doi.org/10.1007/s11515-013-1279-6">https://doi.org/10.1007/s11515-013-1279-6</a>.
  ieee: S. Hippenmeyer, “Dissection of gene function at clonal level using mosaic
    analysis with double markers,” <i>Frontiers in Biology</i>, vol. 8, no. 6. Springer,
    pp. 557–568, 2013.
  ista: Hippenmeyer S. 2013. Dissection of gene function at clonal level using mosaic
    analysis with double markers. Frontiers in Biology. 8(6), 557–568.
  mla: Hippenmeyer, Simon. “Dissection of Gene Function at Clonal Level Using Mosaic
    Analysis with Double Markers.” <i>Frontiers in Biology</i>, vol. 8, no. 6, Springer,
    2013, pp. 557–68, doi:<a href="https://doi.org/10.1007/s11515-013-1279-6">10.1007/s11515-013-1279-6</a>.
  short: S. Hippenmeyer, Frontiers in Biology 8 (2013) 557–568.
date_created: 2018-12-11T11:56:52Z
date_published: 2013-09-03T00:00:00Z
date_updated: 2021-01-12T06:56:39Z
day: '03'
department:
- _id: SiHi
doi: 10.1007/s11515-013-1279-6
intvolume: '         8'
issue: '6'
language:
- iso: eng
month: '09'
oa_version: None
page: 557 - 568
publication: Frontiers in Biology
publication_status: published
publisher: Springer
publist_id: '4624'
quality_controlled: '1'
scopus_import: 1
status: public
title: Dissection of gene function at clonal level using mosaic analysis with double
  markers
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2013'
...
---
_id: '2304'
abstract:
- lang: eng
  text: This extended abstract is concerned with the irregularities of distribution
    of one-dimensional permuted van der Corput sequences that are generated from linear
    permutations. We show how to obtain upper bounds for the discrepancy and diaphony
    of these sequences, by relating them to Kronecker sequences and applying earlier
    results of Faure and Niederreiter.
acknowledgement: This research is supported by the Graduate school of IST Austria
  (Institute of Science and Technology Austria).
author:
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
citation:
  ama: Pausinger F. Van der Corput sequences and linear permutations. <i>Electronic
    Notes in Discrete Mathematics</i>. 2013;43:43-50. doi:<a href="https://doi.org/10.1016/j.endm.2013.07.008">10.1016/j.endm.2013.07.008</a>
  apa: Pausinger, F. (2013). Van der Corput sequences and linear permutations. <i>Electronic
    Notes in Discrete Mathematics</i>. Elsevier. <a href="https://doi.org/10.1016/j.endm.2013.07.008">https://doi.org/10.1016/j.endm.2013.07.008</a>
  chicago: Pausinger, Florian. “Van Der Corput Sequences and Linear Permutations.”
    <i>Electronic Notes in Discrete Mathematics</i>. Elsevier, 2013. <a href="https://doi.org/10.1016/j.endm.2013.07.008">https://doi.org/10.1016/j.endm.2013.07.008</a>.
  ieee: F. Pausinger, “Van der Corput sequences and linear permutations,” <i>Electronic
    Notes in Discrete Mathematics</i>, vol. 43. Elsevier, pp. 43–50, 2013.
  ista: Pausinger F. 2013. Van der Corput sequences and linear permutations. Electronic
    Notes in Discrete Mathematics. 43, 43–50.
  mla: Pausinger, Florian. “Van Der Corput Sequences and Linear Permutations.” <i>Electronic
    Notes in Discrete Mathematics</i>, vol. 43, Elsevier, 2013, pp. 43–50, doi:<a
    href="https://doi.org/10.1016/j.endm.2013.07.008">10.1016/j.endm.2013.07.008</a>.
  short: F. Pausinger, Electronic Notes in Discrete Mathematics 43 (2013) 43–50.
date_created: 2018-12-11T11:56:53Z
date_published: 2013-09-05T00:00:00Z
date_updated: 2021-01-12T06:56:39Z
day: '05'
department:
- _id: HeEd
doi: 10.1016/j.endm.2013.07.008
intvolume: '        43'
language:
- iso: eng
month: '09'
oa_version: None
page: 43 - 50
publication: Electronic Notes in Discrete Mathematics
publication_status: published
publisher: Elsevier
publist_id: '4623'
quality_controlled: '1'
scopus_import: 1
status: public
title: Van der Corput sequences and linear permutations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2013'
...
---
_id: '2305'
abstract:
- lang: eng
  text: We study the complexity of central controller synthesis problems for finite-state
    Markov decision processes, where the objective is to optimize both the expected
    mean-payoff performance of the system and its stability. e argue that the basic
    theoretical notion of expressing the stability in terms of the variance of the
    mean-payoff (called global variance in our paper) is not always sufficient, since
    it ignores possible instabilities on respective runs. For this reason we propose
    alernative definitions of stability, which we call local and hybrid variance,
    and which express how rewards on each run deviate from the run's own mean-payoff
    and from the expected mean-payoff, respectively. We show that a strategy ensuring
    both the expected mean-payoff and the variance below given bounds requires randomization
    and memory, under all the above semantics of variance. We then look at the problem
    of determining whether there is a such a strategy. For the global variance, we
    show that the problem is in PSPACE, and that the answer can be approximated in
    pseudo-polynomial time. For the hybrid variance, the analogous decision problem
    is in NP, and a polynomial-time approximating algorithm also exists. For local
    variance, we show that the decision problem is in NP. Since the overall performance
    can be traded for stability (and vice versa), we also present algorithms for approximating
    the associated Pareto curve in all the three cases. Finally, we study a special
    case of the decision problems, where we require a given expected mean-payoff together
    with zero variance. Here we show that the problems can be all solved in polynomial
    time.
arxiv: 1
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Vojtěch
  full_name: Forejt, Vojtěch
  last_name: Forejt
- first_name: Antonín
  full_name: Kučera, Antonín
  last_name: Kučera
citation:
  ama: 'Brázdil T, Chatterjee K, Forejt V, Kučera A. Trading performance for stability
    in Markov decision processes. In: <i>28th Annual ACM/IEEE Symposium</i>. IEEE;
    2013:331-340. doi:<a href="https://doi.org/10.1109/LICS.2013.39">10.1109/LICS.2013.39</a>'
  apa: 'Brázdil, T., Chatterjee, K., Forejt, V., &#38; Kučera, A. (2013). Trading
    performance for stability in Markov decision processes. In <i>28th Annual ACM/IEEE
    Symposium</i> (pp. 331–340). New Orleans, LA, United States: IEEE. <a href="https://doi.org/10.1109/LICS.2013.39">https://doi.org/10.1109/LICS.2013.39</a>'
  chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Vojtěch Forejt, and Antonín Kučera.
    “Trading Performance for Stability in Markov Decision Processes.” In <i>28th Annual
    ACM/IEEE Symposium</i>, 331–40. IEEE, 2013. <a href="https://doi.org/10.1109/LICS.2013.39">https://doi.org/10.1109/LICS.2013.39</a>.
  ieee: T. Brázdil, K. Chatterjee, V. Forejt, and A. Kučera, “Trading performance
    for stability in Markov decision processes,” in <i>28th Annual ACM/IEEE Symposium</i>,
    New Orleans, LA, United States, 2013, pp. 331–340.
  ista: 'Brázdil T, Chatterjee K, Forejt V, Kučera A. 2013. Trading performance for
    stability in Markov decision processes. 28th Annual ACM/IEEE Symposium. LICS:
    Logic in Computer Science, 331–340.'
  mla: Brázdil, Tomáš, et al. “Trading Performance for Stability in Markov Decision
    Processes.” <i>28th Annual ACM/IEEE Symposium</i>, IEEE, 2013, pp. 331–40, doi:<a
    href="https://doi.org/10.1109/LICS.2013.39">10.1109/LICS.2013.39</a>.
  short: T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE
    Symposium, IEEE, 2013, pp. 331–340.
conference:
  end_date: 2013-06-28
  location: New Orleans, LA, United States
  name: 'LICS: Logic in Computer Science'
  start_date: 2013-06-25
date_created: 2018-12-11T11:56:53Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-09-20T11:15:30Z
day: '01'
department:
- _id: KrCh
doi: 10.1109/LICS.2013.39
ec_funded: 1
external_id:
  arxiv:
  - '1305.4103'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1305.4103
month: '08'
oa: 1
oa_version: Preprint
page: 331 - 340
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: 28th Annual ACM/IEEE Symposium
publication_status: published
publisher: IEEE
publist_id: '4622'
quality_controlled: '1'
related_material:
  record:
  - id: '1294'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: Trading performance for stability in Markov decision processes
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2306'
abstract:
- lang: ger
  text: Das Buch ist sowohl eine Einführung in die Themen Linked Data, Open Data und
    Open Linked Data als es auch den konkreten Bezug auf Bibliotheken behandelt. Hierzu
    werden konkrete Anwendungsprojekte beschrieben. Der Band wendet sich dabei sowohl
    an Personen aus der Bibliothekspraxis als auch an Personen aus dem Bibliotheksmanagement,
    die noch nicht mit dem Thema vertraut sind.
alternative_title:
- Bibliotheks- und Informationspraxis
article_processing_charge: No
author:
- first_name: Patrick
  full_name: Danowski, Patrick
  id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
  last_name: Danowski
  orcid: 0000-0002-6026-4409
- first_name: Adrian
  full_name: Pohl, Adrian
  last_name: Pohl
citation:
  ama: Danowski P, Pohl A. <i>(Open) Linked Data in Bibliotheken</i>. Vol 50. De Gruyter;
    2013. doi:<a href="https://doi.org/10.1515/9783110278736">10.1515/9783110278736</a>
  apa: Danowski, P., &#38; Pohl, A. (2013). <i>(Open) Linked Data in Bibliotheken</i>
    (Vol. 50). De Gruyter. <a href="https://doi.org/10.1515/9783110278736">https://doi.org/10.1515/9783110278736</a>
  chicago: Danowski, Patrick, and Adrian Pohl. <i>(Open) Linked Data in Bibliotheken</i>.
    Vol. 50. De Gruyter, 2013. <a href="https://doi.org/10.1515/9783110278736">https://doi.org/10.1515/9783110278736</a>.
  ieee: P. Danowski and A. Pohl, <i>(Open) Linked Data in Bibliotheken</i>, vol. 50.
    De Gruyter, 2013.
  ista: Danowski P, Pohl A. 2013. (Open) Linked Data in Bibliotheken, De Gruyter,p.
  mla: Danowski, Patrick, and Adrian Pohl. <i>(Open) Linked Data in Bibliotheken</i>.
    Vol. 50, De Gruyter, 2013, doi:<a href="https://doi.org/10.1515/9783110278736">10.1515/9783110278736</a>.
  short: P. Danowski, A. Pohl, (Open) Linked Data in Bibliotheken, De Gruyter, 2013.
date_created: 2018-12-11T11:56:53Z
date_published: 2013-09-13T00:00:00Z
date_updated: 2021-12-21T12:17:19Z
day: '13'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.1515/9783110278736
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license: https://creativecommons.org/licenses/by/4.0/
month: '09'
oa: 1
oa_version: Published Version
publication_identifier:
  eisbn:
  - 9-783-1102-7873-6
  isbn:
  - ' 978-3-11-027634-3'
  issn:
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publication_status: published
publisher: De Gruyter
publist_id: '4621'
pubrep_id: '725'
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title: (Open) Linked Data in Bibliotheken
tmp:
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  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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  short: CC BY (4.0)
type: book
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...
---
_id: '2315'
abstract:
- lang: eng
  text: '     We study the effects of random scatterers on the ground state of the
    one-dimensional Lieb-Liniger model of interacting bosons on the unit interval
    in the Gross-Pitaevskii regime. We prove that Bose Einstein condensation survives
    even a strong random potential with a high density of scatterers. The character
    of the wave function of the condensate, however, depends in an essential way on
    the interplay between randomness and the strength of the two-body interaction.
    For low density of scatterers or strong interactions the wave function extends
    over the whole interval. High density of scatterers and weak interaction, on the
    other hand, leads to localization of the wave function in a fragmented subset
    of the interval. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
- first_name: Jakob
  full_name: Yngvason, Jakob
  last_name: Yngvason
- first_name: Valentin
  full_name: Zagrebnov, Valentin
  last_name: Zagrebnov
citation:
  ama: 'Seiringer R, Yngvason J, Zagrebnov V. Disordered Bose-Einstein condensates
    with interaction. In: World Scientific Publishing; 2013:610-619. doi:<a href="https://doi.org/10.1142/9789814449243_0063">10.1142/9789814449243_0063</a>'
  apa: 'Seiringer, R., Yngvason, J., &#38; Zagrebnov, V. (2013). Disordered Bose-Einstein
    condensates with interaction (pp. 610–619). Presented at the ICMP: International
    Congress on Mathematical Physics, World Scientific Publishing. <a href="https://doi.org/10.1142/9789814449243_0063">https://doi.org/10.1142/9789814449243_0063</a>'
  chicago: Seiringer, Robert, Jakob Yngvason, and Valentin Zagrebnov. “Disordered
    Bose-Einstein Condensates with Interaction,” 610–19. World Scientific Publishing,
    2013. <a href="https://doi.org/10.1142/9789814449243_0063">https://doi.org/10.1142/9789814449243_0063</a>.
  ieee: 'R. Seiringer, J. Yngvason, and V. Zagrebnov, “Disordered Bose-Einstein condensates
    with interaction,” presented at the ICMP: International Congress on Mathematical
    Physics, 2013, pp. 610–619.'
  ista: 'Seiringer R, Yngvason J, Zagrebnov V. 2013. Disordered Bose-Einstein condensates
    with interaction. ICMP: International Congress on Mathematical Physics, 610–619.'
  mla: Seiringer, Robert, et al. <i>Disordered Bose-Einstein Condensates with Interaction</i>.
    World Scientific Publishing, 2013, pp. 610–19, doi:<a href="https://doi.org/10.1142/9789814449243_0063">10.1142/9789814449243_0063</a>.
  short: R. Seiringer, J. Yngvason, V. Zagrebnov, in:, World Scientific Publishing,
    2013, pp. 610–619.
conference:
  name: 'ICMP: International Congress on Mathematical Physics'
date_created: 2018-12-11T11:56:57Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:43Z
doi: 10.1142/9789814449243_0063
extern: '1'
external_id:
  arxiv:
  - '1209.4046'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1209.4046
oa: 1
oa_version: None
page: 610-619
publication_status: published
publisher: World Scientific Publishing
publist_id: '4612'
status: public
title: Disordered Bose-Einstein condensates with interaction
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '2319'
abstract:
- lang: eng
  text: In a recent paper [7] we give the first rigorous derivation of the celebrated
    Ginzburg-Landau (GL)theory, starting from the microscopic Bardeen- Cooper-Schrieffer
    (BCS)model. Here we present our results in the simplified case of a one-dimensional
    system of particles interacting via a δ-potential.
author:
- first_name: Rupert
  full_name: Frank, Rupert L
  last_name: Frank
- first_name: Christian
  full_name: Hainzl, Christian
  last_name: Hainzl
- first_name: Robert
  full_name: Robert Seiringer
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
- first_name: Jan
  full_name: Solovej, Jan P
  last_name: Solovej
citation:
  ama: 'Frank R, Hainzl C, Seiringer R, Solovej J.  Derivation of Ginzburg-Landau
    theory for a one-dimensional system with contact interaction. In: Springer; 2013:57-88.
    doi:<a href="https://doi.org/10.1007/978-3-0348-0531-5_3">10.1007/978-3-0348-0531-5_3</a>'
  apa: 'Frank, R., Hainzl, C., Seiringer, R., &#38; Solovej, J. (2013).  Derivation
    of Ginzburg-Landau theory for a one-dimensional system with contact interaction
    (pp. 57–88). Presented at the OTAMP: Operator Theory, Analysis and Mathematical
    Physics, Springer. <a href="https://doi.org/10.1007/978-3-0348-0531-5_3">https://doi.org/10.1007/978-3-0348-0531-5_3</a>'
  chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “ Derivation
    of Ginzburg-Landau Theory for a One-Dimensional System with Contact Interaction,”
    57–88. Springer, 2013. <a href="https://doi.org/10.1007/978-3-0348-0531-5_3">https://doi.org/10.1007/978-3-0348-0531-5_3</a>.
  ieee: 'R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “ Derivation of Ginzburg-Landau
    theory for a one-dimensional system with contact interaction,” presented at the
    OTAMP: Operator Theory, Analysis and Mathematical Physics, 2013, pp. 57–88.'
  ista: 'Frank R, Hainzl C, Seiringer R, Solovej J. 2013.  Derivation of Ginzburg-Landau
    theory for a one-dimensional system with contact interaction. OTAMP: Operator
    Theory, Analysis and Mathematical Physics, 57–88.'
  mla: Frank, Rupert, et al. <i> Derivation of Ginzburg-Landau Theory for a One-Dimensional
    System with Contact Interaction</i>. Springer, 2013, pp. 57–88, doi:<a href="https://doi.org/10.1007/978-3-0348-0531-5_3">10.1007/978-3-0348-0531-5_3</a>.
  short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, in:, Springer, 2013, pp. 57–88.
conference:
  name: 'OTAMP: Operator Theory, Analysis and Mathematical Physics'
date_created: 2018-12-11T11:56:58Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:45Z
day: '01'
doi: 10.1007/978-3-0348-0531-5_3
extern: 1
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1103.1866
month: '01'
oa: 1
page: 57 - 88
publication_status: published
publisher: Springer
publist_id: '4608'
quality_controlled: 0
status: public
title: ' Derivation of Ginzburg-Landau theory for a one-dimensional system with contact
  interaction'
type: conference
year: '2013'
...
---
_id: '2327'
abstract:
- lang: eng
  text: 'We define the model-measuring problem: given a model M and specification
    φ, what is the maximal distance ρ such that all models M′ within distance ρ from
    M satisfy (or violate) φ. The model measuring problem presupposes a distance function
    on models. We concentrate on automatic distance functions, which are defined by
    weighted automata. The model-measuring problem subsumes several generalizations
    of the classical model-checking problem, in particular, quantitative model-checking
    problems that measure the degree of satisfaction of a specification, and robustness
    problems that measure how much a model can be perturbed without violating the
    specification. We show that for automatic distance functions, and ω-regular linear-time
    and branching-time specifications, the model-measuring problem can be solved.
    We use automata-theoretic model-checking methods for model measuring, replacing
    the emptiness question for standard word and tree automata by the optimal-weight
    question for the weighted versions of these automata. We consider weighted automata
    that accumulate weights by maximizing, summing, discounting, and limit averaging.
    We give several examples of using the model-measuring problem to compute various
    notions of robustness and quantitative satisfaction for temporal specifications.'
alternative_title:
- LNCS
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
citation:
  ama: Henzinger TA, Otop J. From model checking to model measuring. 2013;8052:273-287.
    doi:<a href="https://doi.org/10.1007/978-3-642-40184-8_20">10.1007/978-3-642-40184-8_20</a>
  apa: 'Henzinger, T. A., &#38; Otop, J. (2013). From model checking to model measuring.
    Presented at the CONCUR: Concurrency Theory, Buenos Aires, Argentina: Springer.
    <a href="https://doi.org/10.1007/978-3-642-40184-8_20">https://doi.org/10.1007/978-3-642-40184-8_20</a>'
  chicago: Henzinger, Thomas A, and Jan Otop. “From Model Checking to Model Measuring.”
    Lecture Notes in Computer Science. Springer, 2013. <a href="https://doi.org/10.1007/978-3-642-40184-8_20">https://doi.org/10.1007/978-3-642-40184-8_20</a>.
  ieee: T. A. Henzinger and J. Otop, “From model checking to model measuring,” vol.
    8052. Springer, pp. 273–287, 2013.
  ista: Henzinger TA, Otop J. 2013. From model checking to model measuring. 8052,
    273–287.
  mla: Henzinger, Thomas A., and Jan Otop. <i>From Model Checking to Model Measuring</i>.
    Vol. 8052, Springer, 2013, pp. 273–87, doi:<a href="https://doi.org/10.1007/978-3-642-40184-8_20">10.1007/978-3-642-40184-8_20</a>.
  short: T.A. Henzinger, J. Otop, 8052 (2013) 273–287.
conference:
  end_date: 2013-08-30
  location: Buenos Aires, Argentina
  name: 'CONCUR: Concurrency Theory'
  start_date: 2013-08-27
date_created: 2018-12-11T11:57:00Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-02-23T12:25:26Z
day: '01'
ddc:
- '005'
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-642-40184-8_20
file:
- access_level: open_access
  checksum: 4c04695c4bfdf2119cd4f5d1babc3e8a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:45Z
  date_updated: 2020-07-14T12:45:38Z
  file_id: '5301'
  file_name: IST-2013-129-v1+1_concur.pdf
  file_size: 378587
  relation: main_file
file_date_updated: 2020-07-14T12:45:38Z
has_accepted_license: '1'
intvolume: '      8052'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 273 - 287
publication_status: published
publisher: Springer
publist_id: '4599'
pubrep_id: '129'
quality_controlled: '1'
related_material:
  record:
  - id: '5417'
    relation: earlier_version
    status: public
series_title: Lecture Notes in Computer Science
status: public
title: From model checking to model measuring
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8052
year: '2013'
...
---
_id: '2328'
abstract:
- lang: eng
  text: "Linearizability of concurrent data structures is usually proved by monolithic
    simulation arguments relying on identifying the so-called linearization points.
    Regrettably, such proofs, whether manual or automatic, are often complicated and
    scale poorly to advanced non-blocking concurrency patterns, such as helping and
    optimistic updates.\r\nIn response, we propose a more modular way of checking
    linearizability of concurrent queue algorithms that does not involve identifying
    linearization points. We reduce the task of proving linearizability with respect
    to the queue specification to establishing four basic properties, each of which
    can be proved independently by simpler arguments. As a demonstration of our approach,
    we verify the Herlihy and Wing queue, an algorithm that is challenging to verify
    by a simulation proof."
alternative_title:
- LNCS
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Ali
  full_name: Sezgin, Ali
  id: 4C7638DA-F248-11E8-B48F-1D18A9856A87
  last_name: Sezgin
- first_name: Viktor
  full_name: Vafeiadis, Viktor
  last_name: Vafeiadis
citation:
  ama: Henzinger TA, Sezgin A, Vafeiadis V. Aspect-oriented linearizability proofs.
    2013;8052:242-256. doi:<a href="https://doi.org/10.1007/978-3-642-40184-8_18">10.1007/978-3-642-40184-8_18</a>
  apa: 'Henzinger, T. A., Sezgin, A., &#38; Vafeiadis, V. (2013). Aspect-oriented
    linearizability proofs. Presented at the CONCUR: Concurrency Theory, Buenos Aires,
    Argentina: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.1007/978-3-642-40184-8_18">https://doi.org/10.1007/978-3-642-40184-8_18</a>'
  chicago: Henzinger, Thomas A, Ali Sezgin, and Viktor Vafeiadis. “Aspect-Oriented
    Linearizability Proofs.” Lecture Notes in Computer Science. Schloss Dagstuhl -
    Leibniz-Zentrum für Informatik, 2013. <a href="https://doi.org/10.1007/978-3-642-40184-8_18">https://doi.org/10.1007/978-3-642-40184-8_18</a>.
  ieee: T. A. Henzinger, A. Sezgin, and V. Vafeiadis, “Aspect-oriented linearizability
    proofs,” vol. 8052. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp. 242–256,
    2013.
  ista: Henzinger TA, Sezgin A, Vafeiadis V. 2013. Aspect-oriented linearizability
    proofs. 8052, 242–256.
  mla: Henzinger, Thomas A., et al. <i>Aspect-Oriented Linearizability Proofs</i>.
    Vol. 8052, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 242–56,
    doi:<a href="https://doi.org/10.1007/978-3-642-40184-8_18">10.1007/978-3-642-40184-8_18</a>.
  short: T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
conference:
  end_date: 2013-08-30
  location: Buenos Aires, Argentina
  name: 'CONCUR: Concurrency Theory'
  start_date: 2013-08-27
date_created: 2018-12-11T11:57:01Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-02-23T10:16:27Z
day: '01'
ddc:
- '000'
- '004'
department:
- _id: ToHe
doi: 10.1007/978-3-642-40184-8_18
ec_funded: 1
file:
- access_level: open_access
  checksum: bdbb520de91751fe0136309ad4ef67e4
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:58Z
  date_updated: 2020-07-14T12:45:39Z
  file_id: '4721'
  file_name: IST-2014-197-v1+1_main-queue-verification.pdf
  file_size: 337059
  relation: main_file
file_date_updated: 2020-07-14T12:45:39Z
has_accepted_license: '1'
intvolume: '      8052'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
page: 242 - 256
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4598'
pubrep_id: '197'
quality_controlled: '1'
related_material:
  record:
  - id: '1832'
    relation: later_version
    status: public
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Aspect-oriented linearizability proofs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8052
year: '2013'
...
---
_id: '2329'
abstract:
- lang: eng
  text: 'Two-player games on graphs are central in many problems in formal verification
    and program analysis such as synthesis and verification of open systems. In this
    work, we consider both finite-state game graphs, and recursive game graphs (or
    pushdown game graphs) that model the control flow of sequential programs with
    recursion. The objectives we study are multidimensional mean-payoff objectives,
    where the goal of player 1 is to ensure that the mean-payoff is non-negative in
    all dimensions. In pushdown games two types of strategies are relevant: (1) global
    strategies, that depend on the entire global history; and (2) modular strategies,
    that have only local memory and thus do not depend on the context of invocation.
    Our main contributions are as follows: (1) We show that finite-state multidimensional
    mean-payoff games can be solved in polynomial time if the number of dimensions
    and the maximal absolute value of the weights are fixed; whereas if the number
    of dimensions is arbitrary, then the problem is known to be coNP-complete. (2)
    We show that pushdown graphs with multidimensional mean-payoff objectives can
    be solved in polynomial time. For both (1) and (2) our algorithms are based on
    hyperplane separation technique. (3) For pushdown games under global strategies
    both one and multidimensional mean-payoff objectives problems are known to be
    undecidable, and we show that under modular strategies the multidimensional problem
    is also undecidable; under modular strategies the one-dimensional problem is NP-complete.
    We show that if the number of modules, the number of exits, and the maximal absolute
    value of the weights are fixed, then pushdown games under modular strategies with
    one-dimensional mean-payoff objectives can be solved in polynomial time, and if
    either the number of exits or the number of modules is unbounded, then the problem
    is NP-hard. (4) Finally we show that a fixed parameter tractable algorithm for
    finite-state multidimensional mean-payoff games or pushdown games under modular
    strategies with one-dimensional mean-payoff objectives would imply the fixed parameter
    tractability of parity games.'
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Yaron
  full_name: Velner, Yaron
  last_name: Velner
citation:
  ama: Chatterjee K, Velner Y. Hyperplane separation technique for multidimensional
    mean-payoff games. 2013;8052:500-515. doi:<a href="https://doi.org/10.1007/978-3-642-40184-8_35">10.1007/978-3-642-40184-8_35</a>
  apa: 'Chatterjee, K., &#38; Velner, Y. (2013). Hyperplane separation technique for
    multidimensional mean-payoff games. Presented at the CONCUR: Concurrency Theory,
    Buenos Aires, Argentinia: Springer. <a href="https://doi.org/10.1007/978-3-642-40184-8_35">https://doi.org/10.1007/978-3-642-40184-8_35</a>'
  chicago: Chatterjee, Krishnendu, and Yaron Velner. “Hyperplane Separation Technique
    for Multidimensional Mean-Payoff Games.” Lecture Notes in Computer Science. Springer,
    2013. <a href="https://doi.org/10.1007/978-3-642-40184-8_35">https://doi.org/10.1007/978-3-642-40184-8_35</a>.
  ieee: K. Chatterjee and Y. Velner, “Hyperplane separation technique for multidimensional
    mean-payoff games,” vol. 8052. Springer, pp. 500–515, 2013.
  ista: Chatterjee K, Velner Y. 2013. Hyperplane separation technique for multidimensional
    mean-payoff games. 8052, 500–515.
  mla: Chatterjee, Krishnendu, and Yaron Velner. <i>Hyperplane Separation Technique
    for Multidimensional Mean-Payoff Games</i>. Vol. 8052, Springer, 2013, pp. 500–15,
    doi:<a href="https://doi.org/10.1007/978-3-642-40184-8_35">10.1007/978-3-642-40184-8_35</a>.
  short: K. Chatterjee, Y. Velner, 8052 (2013) 500–515.
conference:
  end_date: 2013-08-30
  location: Buenos Aires, Argentinia
  name: 'CONCUR: Concurrency Theory'
  start_date: 2013-08-27
date_created: 2018-12-11T11:57:01Z
date_published: 2013-08-01T00:00:00Z
date_updated: 2023-02-23T13:00:42Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-642-40184-8_35
ec_funded: 1
external_id:
  arxiv:
  - '1210.3141'
intvolume: '      8052'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1210.3141
month: '08'
oa: 1
oa_version: Preprint
page: 500 - 515
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: Springer
publist_id: '4597'
quality_controlled: '1'
related_material:
  record:
  - id: '717'
    relation: later_version
    status: public
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: Hyperplane separation technique for multidimensional mean-payoff games
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8052
year: '2013'
...
---
_id: '2404'
abstract:
- lang: eng
  text: The Lieb-Thirring inequalities give a bound on the negative eigenvalues of
    a Schrödinger operator in terms of an Lp-norm of the potential. These are dual
    to bounds on the H1-norms of a system of orthonormal functions. Here we extend
    these bounds to analogous inequalities for perturbations of the Fermi sea of noninteracting
    particles (i.e., for perturbations of the continuous spectrum of the Laplacian
    by local potentials).
author:
- first_name: Rupert
  full_name: Frank, Rupert L
  last_name: Frank
- first_name: Mathieu
  full_name: Lewin, Mathieu
  last_name: Lewin
- first_name: Élliott
  full_name: Lieb, Élliott H
  last_name: Lieb
- first_name: Robert
  full_name: Robert Seiringer
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Frank R, Lewin M, Lieb É, Seiringer R. A positive density analogue of the Lieb-Thirring
    inequality. <i>Duke Mathematical Journal</i>. 2013;162(3):435-495. doi:<a href="https://doi.org/10.1215/00127094-2019477">10.1215/00127094-2019477</a>
  apa: Frank, R., Lewin, M., Lieb, É., &#38; Seiringer, R. (2013). A positive density
    analogue of the Lieb-Thirring inequality. <i>Duke Mathematical Journal</i>. Duke
    University Press. <a href="https://doi.org/10.1215/00127094-2019477">https://doi.org/10.1215/00127094-2019477</a>
  chicago: Frank, Rupert, Mathieu Lewin, Élliott Lieb, and Robert Seiringer. “A Positive
    Density Analogue of the Lieb-Thirring Inequality.” <i>Duke Mathematical Journal</i>.
    Duke University Press, 2013. <a href="https://doi.org/10.1215/00127094-2019477">https://doi.org/10.1215/00127094-2019477</a>.
  ieee: R. Frank, M. Lewin, É. Lieb, and R. Seiringer, “A positive density analogue
    of the Lieb-Thirring inequality,” <i>Duke Mathematical Journal</i>, vol. 162,
    no. 3. Duke University Press, pp. 435–495, 2013.
  ista: Frank R, Lewin M, Lieb É, Seiringer R. 2013. A positive density analogue of
    the Lieb-Thirring inequality. Duke Mathematical Journal. 162(3), 435–495.
  mla: Frank, Rupert, et al. “A Positive Density Analogue of the Lieb-Thirring Inequality.”
    <i>Duke Mathematical Journal</i>, vol. 162, no. 3, Duke University Press, 2013,
    pp. 435–95, doi:<a href="https://doi.org/10.1215/00127094-2019477">10.1215/00127094-2019477</a>.
  short: R. Frank, M. Lewin, É. Lieb, R. Seiringer, Duke Mathematical Journal 162
    (2013) 435–495.
date_created: 2018-12-11T11:57:28Z
date_published: 2013-02-01T00:00:00Z
date_updated: 2021-01-12T06:57:17Z
day: '01'
doi: 10.1215/00127094-2019477
extern: 1
intvolume: '       162'
issue: '3'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1108.4246
month: '02'
oa: 1
page: 435 - 495
publication: Duke Mathematical Journal
publication_status: published
publisher: Duke University Press
publist_id: '4521'
quality_controlled: 0
status: public
title: A positive density analogue of the Lieb-Thirring inequality
type: journal_article
volume: 162
year: '2013'
...
---
_id: '2405'
abstract:
- lang: eng
  text: We consider the bipolaron in the Pekar-Tomasevich approximation and address
    the question whether the ground state is spherically symmetric or not. Numerical
    analysis has, so far, not completely settled the question. Our contribution is
    to prove rigorously that the ground state remains spherical for small values of
    the electron-electron Coulomb repulsion.
author:
- first_name: Rupert
  full_name: Frank, Rupert L
  last_name: Frank
- first_name: Élliott
  full_name: Lieb, Élliott H
  last_name: Lieb
- first_name: Robert
  full_name: Robert Seiringer
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Frank R, Lieb É, Seiringer R. Symmetry of bipolaron bound states for small
    Coulomb repulsion. <i>Communications in Mathematical Physics</i>. 2013;319(2):557-573.
    doi:<a href="https://doi.org/10.1007/s00220-012-1604-y">10.1007/s00220-012-1604-y</a>
  apa: Frank, R., Lieb, É., &#38; Seiringer, R. (2013). Symmetry of bipolaron bound
    states for small Coulomb repulsion. <i>Communications in Mathematical Physics</i>.
    Springer. <a href="https://doi.org/10.1007/s00220-012-1604-y">https://doi.org/10.1007/s00220-012-1604-y</a>
  chicago: Frank, Rupert, Élliott Lieb, and Robert Seiringer. “Symmetry of Bipolaron
    Bound States for Small Coulomb Repulsion.” <i>Communications in Mathematical Physics</i>.
    Springer, 2013. <a href="https://doi.org/10.1007/s00220-012-1604-y">https://doi.org/10.1007/s00220-012-1604-y</a>.
  ieee: R. Frank, É. Lieb, and R. Seiringer, “Symmetry of bipolaron bound states for
    small Coulomb repulsion,” <i>Communications in Mathematical Physics</i>, vol.
    319, no. 2. Springer, pp. 557–573, 2013.
  ista: Frank R, Lieb É, Seiringer R. 2013. Symmetry of bipolaron bound states for
    small Coulomb repulsion. Communications in Mathematical Physics. 319(2), 557–573.
  mla: Frank, Rupert, et al. “Symmetry of Bipolaron Bound States for Small Coulomb
    Repulsion.” <i>Communications in Mathematical Physics</i>, vol. 319, no. 2, Springer,
    2013, pp. 557–73, doi:<a href="https://doi.org/10.1007/s00220-012-1604-y">10.1007/s00220-012-1604-y</a>.
  short: R. Frank, É. Lieb, R. Seiringer, Communications in Mathematical Physics 319
    (2013) 557–573.
date_created: 2018-12-11T11:57:28Z
date_published: 2013-04-01T00:00:00Z
date_updated: 2021-01-12T06:57:17Z
day: '01'
doi: 10.1007/s00220-012-1604-y
extern: 1
intvolume: '       319'
issue: '2'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1201.3954
month: '04'
oa: 1
page: 557 - 573
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4522'
quality_controlled: 0
status: public
title: Symmetry of bipolaron bound states for small Coulomb repulsion
type: journal_article
volume: 319
year: '2013'
...
---
_id: '2406'
abstract:
- lang: eng
  text: We study the effects of random scatterers on the ground state of the one-dimensional
    Lieb-Liniger model of interacting bosons on the unit interval. We prove that,
    in the Gross-Pitaevskii limit, Bose Einstein condensation takes place in the whole
    parameter range considered. The character of the wave function of the condensate,
    however, depends in an essential way on the interplay between randomness and the
    strength of the two-body interaction. For low density of scatterers or strong
    interactions the wave function extends over the whole interval. High density of
    scatterers and weak interaction, on the other hand, leads to localization of the
    wave function in a fragmented subset of the unit interval.
author:
- first_name: Robert
  full_name: Robert Seiringer
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
- first_name: Jakob
  full_name: Yngvason, Jakob
  last_name: Yngvason
- first_name: Valentin
  full_name: Zagrebnov, Valentin A
  last_name: Zagrebnov
citation:
  ama: 'Seiringer R, Yngvason J, Zagrebnov V. Condensation of interacting bosons in
    a random potential. <i>European Physical Journal: Special Topics</i>. 2013;217(1):103-107.
    doi:<a href="https://doi.org/10.1140/epjst/e2013-01759-5">10.1140/epjst/e2013-01759-5</a>'
  apa: 'Seiringer, R., Yngvason, J., &#38; Zagrebnov, V. (2013). Condensation of interacting
    bosons in a random potential. <i>European Physical Journal: Special Topics</i>.
    Springer. <a href="https://doi.org/10.1140/epjst/e2013-01759-5">https://doi.org/10.1140/epjst/e2013-01759-5</a>'
  chicago: 'Seiringer, Robert, Jakob Yngvason, and Valentin Zagrebnov. “Condensation
    of Interacting Bosons in a Random Potential.” <i>European Physical Journal: Special
    Topics</i>. Springer, 2013. <a href="https://doi.org/10.1140/epjst/e2013-01759-5">https://doi.org/10.1140/epjst/e2013-01759-5</a>.'
  ieee: 'R. Seiringer, J. Yngvason, and V. Zagrebnov, “Condensation of interacting
    bosons in a random potential,” <i>European Physical Journal: Special Topics</i>,
    vol. 217, no. 1. Springer, pp. 103–107, 2013.'
  ista: 'Seiringer R, Yngvason J, Zagrebnov V. 2013. Condensation of interacting bosons
    in a random potential. European Physical Journal: Special Topics. 217(1), 103–107.'
  mla: 'Seiringer, Robert, et al. “Condensation of Interacting Bosons in a Random
    Potential.” <i>European Physical Journal: Special Topics</i>, vol. 217, no. 1,
    Springer, 2013, pp. 103–07, doi:<a href="https://doi.org/10.1140/epjst/e2013-01759-5">10.1140/epjst/e2013-01759-5</a>.'
  short: 'R. Seiringer, J. Yngvason, V. Zagrebnov, European Physical Journal: Special
    Topics 217 (2013) 103–107.'
date_created: 2018-12-11T11:57:29Z
date_published: 2013-02-01T00:00:00Z
date_updated: 2021-01-12T06:57:17Z
day: '01'
doi: 10.1140/epjst/e2013-01759-5
extern: 1
intvolume: '       217'
issue: '1'
month: '02'
page: 103 - 107
publication: 'European Physical Journal: Special Topics'
publication_status: published
publisher: Springer
publist_id: '4520'
quality_controlled: 0
status: public
title: Condensation of interacting bosons in a random potential
type: journal_article
volume: 217
year: '2013'
...
---
_id: '2408'
abstract:
- lang: eng
  text: We investigate the low-energy excitation spectrum of a Bose gas confined in
    a trap, with weak long-range repulsive interactions. In particular, we prove that
    the spectrum can be described in terms of the eigenvalues of an effective one-particle
    operator, as predicted by the Bogoliubov approximation.
author:
- first_name: Philip
  full_name: Grech, Philip
  last_name: Grech
- first_name: Robert
  full_name: Robert Seiringer
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Grech P, Seiringer R. The excitation spectrum for weakly interacting Bosons
    in a trap. <i>Communications in Mathematical Physics</i>. 2013;322(2):559-591.
    doi:<a href="https://doi.org/10.1007/s00220-013-1736-8">10.1007/s00220-013-1736-8</a>
  apa: Grech, P., &#38; Seiringer, R. (2013). The excitation spectrum for weakly interacting
    Bosons in a trap. <i>Communications in Mathematical Physics</i>. Springer. <a
    href="https://doi.org/10.1007/s00220-013-1736-8">https://doi.org/10.1007/s00220-013-1736-8</a>
  chicago: Grech, Philip, and Robert Seiringer. “The Excitation Spectrum for Weakly
    Interacting Bosons in a Trap.” <i>Communications in Mathematical Physics</i>.
    Springer, 2013. <a href="https://doi.org/10.1007/s00220-013-1736-8">https://doi.org/10.1007/s00220-013-1736-8</a>.
  ieee: P. Grech and R. Seiringer, “The excitation spectrum for weakly interacting
    Bosons in a trap,” <i>Communications in Mathematical Physics</i>, vol. 322, no.
    2. Springer, pp. 559–591, 2013.
  ista: Grech P, Seiringer R. 2013. The excitation spectrum for weakly interacting
    Bosons in a trap. Communications in Mathematical Physics. 322(2), 559–591.
  mla: Grech, Philip, and Robert Seiringer. “The Excitation Spectrum for Weakly Interacting
    Bosons in a Trap.” <i>Communications in Mathematical Physics</i>, vol. 322, no.
    2, Springer, 2013, pp. 559–91, doi:<a href="https://doi.org/10.1007/s00220-013-1736-8">10.1007/s00220-013-1736-8</a>.
  short: P. Grech, R. Seiringer, Communications in Mathematical Physics 322 (2013)
    559–591.
date_created: 2018-12-11T11:57:29Z
date_published: 2013-09-01T00:00:00Z
date_updated: 2021-01-12T06:57:18Z
day: '01'
doi: 10.1007/s00220-013-1736-8
extern: 1
intvolume: '       322'
issue: '2'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1205.5259
month: '09'
oa: 1
page: 559 - 591
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4518'
quality_controlled: 0
status: public
title: The excitation spectrum for weakly interacting Bosons in a trap
type: journal_article
volume: 322
year: '2013'
...
---
_id: '2410'
abstract:
- lang: eng
  text: 'Here, we describe a novel virulent bacteriophage that infects Bacillus weihenstephanensis,
    isolated from soil in Austria. It is the first phage to be discovered that infects
    this species. Here, we present the complete genome sequence of this podovirus. '
author:
- first_name: Rodrigo A
  full_name: Fernandes Redondo, Rodrigo A
  id: 409D5C96-F248-11E8-B48F-1D18A9856A87
  last_name: Fernandes Redondo
  orcid: 0000-0002-5837-2793
- first_name: Anne
  full_name: Kupczok, Anne
  id: 2BB22BC2-F248-11E8-B48F-1D18A9856A87
  last_name: Kupczok
- first_name: Gertraud
  full_name: Stift, Gertraud
  id: 2DB195CA-F248-11E8-B48F-1D18A9856A87
  last_name: Stift
- first_name: Jonathan P
  full_name: Bollback, Jonathan P
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
citation:
  ama: Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. Complete genome sequence
    of the novel phage MG-B1 infecting bacillus weihenstephanensis. <i>Genome Announcements</i>.
    2013;1(3). doi:<a href="https://doi.org/10.1128/genomeA.00216-13">10.1128/genomeA.00216-13</a>
  apa: Fernandes Redondo, R. A., Kupczok, A., Stift, G., &#38; Bollback, J. P. (2013).
    Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis.
    <i>Genome Announcements</i>. American Society for Microbiology. <a href="https://doi.org/10.1128/genomeA.00216-13">https://doi.org/10.1128/genomeA.00216-13</a>
  chicago: Fernandes Redondo, Rodrigo A, Anne Kupczok, Gertraud Stift, and Jonathan
    P Bollback. “Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus
    Weihenstephanensis.” <i>Genome Announcements</i>. American Society for Microbiology,
    2013. <a href="https://doi.org/10.1128/genomeA.00216-13">https://doi.org/10.1128/genomeA.00216-13</a>.
  ieee: R. A. Fernandes Redondo, A. Kupczok, G. Stift, and J. P. Bollback, “Complete
    genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis,”
    <i>Genome Announcements</i>, vol. 1, no. 3. American Society for Microbiology,
    2013.
  ista: Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. 2013. Complete genome
    sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome
    Announcements. 1(3).
  mla: Fernandes Redondo, Rodrigo A., et al. “Complete Genome Sequence of the Novel
    Phage MG-B1 Infecting Bacillus Weihenstephanensis.” <i>Genome Announcements</i>,
    vol. 1, no. 3, American Society for Microbiology, 2013, doi:<a href="https://doi.org/10.1128/genomeA.00216-13">10.1128/genomeA.00216-13</a>.
  short: R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements
    1 (2013).
date_created: 2018-12-11T11:57:30Z
date_published: 2013-06-13T00:00:00Z
date_updated: 2021-01-12T06:57:19Z
day: '13'
ddc:
- '576'
department:
- _id: JoBo
- _id: LifeSc
doi: 10.1128/genomeA.00216-13
file:
- access_level: open_access
  checksum: 0751ec74b695567e0cdf02aaf9c26829
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:36Z
  date_updated: 2020-07-14T12:45:40Z
  file_id: '5291'
  file_name: IST-2015-398-v1+1_Genome_Announc.-2013-Redondo-.pdf
  file_size: 130026
  relation: main_file
file_date_updated: 2020-07-14T12:45:40Z
has_accepted_license: '1'
intvolume: '         1'
issue: '3'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Genome Announcements
publication_status: published
publisher: American Society for Microbiology
publist_id: '4516'
pubrep_id: '398'
quality_controlled: '1'
scopus_import: 1
status: public
title: Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2013'
...
---
_id: '2412'
abstract:
- lang: eng
  text: 'Background: The CRISPR/Cas system is known to act as an adaptive and heritable
    immune system in Eubacteria and Archaea. Immunity is encoded in an array of spacer
    sequences. Each spacer can provide specific immunity to invasive elements that
    carry the same or a similar sequence. Even in closely related strains, spacer
    content is very dynamic and evolves quickly. Standard models of nucleotide evolutioncannot
    be applied to quantify its rate of change since processes other than single nucleotide
    changes determine its evolution.Methods We present probabilistic models that are
    specific for spacer content evolution. They account for the different processes
    of insertion and deletion. Insertions can be constrained to occur on one end only
    or are allowed to occur throughout the array. One deletion event can affect one
    spacer or a whole fragment of adjacent spacers. Parameters of the underlying models
    are estimated for a pair of arrays by maximum likelihood using explicit ancestor
    enumeration.Results Simulations show that parameters are well estimated on average
    under the models presented here. There is a bias in the rate estimation when including
    fragment deletions. The models also estimate times between pairs of strains. But
    with increasing time, spacer overlap goes to zero, and thus there is an upper
    bound on the distance that can be estimated. Spacer content similarities are displayed
    in a distance based phylogeny using the estimated times.We use the presented models
    to analyze different Yersinia pestis data sets and find that the results among
    them are largely congruent. The models also capture the variation in diversity
    of spacers among the data sets. A comparison of spacer-based phylogenies and Cas
    gene phylogenies shows that they resolve very different time scales for this data
    set.Conclusions The simulations and data analyses show that the presented models
    are useful for quantifying spacer content evolution and for displaying spacer
    content similarities of closely related strains in a phylogeny. This allows for
    comparisons of different CRISPR arrays or for comparisons between CRISPR arrays
    and nucleotide substitution rates.'
author:
- first_name: Anne
  full_name: Kupczok, Anne
  id: 2BB22BC2-F248-11E8-B48F-1D18A9856A87
  last_name: Kupczok
- first_name: Jonathan P
  full_name: Bollback, Jonathan P
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
citation:
  ama: Kupczok A, Bollback JP. Probabilistic models for CRISPR spacer content evolution
    . <i>BMC Evolutionary Biology</i>. 2013;13(1):54-54. doi:<a href="https://doi.org/10.1186/1471-2148-13-54">10.1186/1471-2148-13-54</a>
  apa: Kupczok, A., &#38; Bollback, J. P. (2013). Probabilistic models for CRISPR
    spacer content evolution . <i>BMC Evolutionary Biology</i>. BioMed Central. <a
    href="https://doi.org/10.1186/1471-2148-13-54">https://doi.org/10.1186/1471-2148-13-54</a>
  chicago: Kupczok, Anne, and Jonathan P Bollback. “Probabilistic Models for CRISPR
    Spacer Content Evolution .” <i>BMC Evolutionary Biology</i>. BioMed Central, 2013.
    <a href="https://doi.org/10.1186/1471-2148-13-54">https://doi.org/10.1186/1471-2148-13-54</a>.
  ieee: A. Kupczok and J. P. Bollback, “Probabilistic models for CRISPR spacer content
    evolution ,” <i>BMC Evolutionary Biology</i>, vol. 13, no. 1. BioMed Central,
    pp. 54–54, 2013.
  ista: Kupczok A, Bollback JP. 2013. Probabilistic models for CRISPR spacer content
    evolution . BMC Evolutionary Biology. 13(1), 54–54.
  mla: Kupczok, Anne, and Jonathan P. Bollback. “Probabilistic Models for CRISPR Spacer
    Content Evolution .” <i>BMC Evolutionary Biology</i>, vol. 13, no. 1, BioMed Central,
    2013, pp. 54–54, doi:<a href="https://doi.org/10.1186/1471-2148-13-54">10.1186/1471-2148-13-54</a>.
  short: A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
date_created: 2018-12-11T11:57:31Z
date_published: 2013-02-26T00:00:00Z
date_updated: 2021-01-12T06:57:20Z
day: '26'
ddc:
- '576'
department:
- _id: JoBo
doi: 10.1186/1471-2148-13-54
file:
- access_level: open_access
  checksum: 029c7e0b198c19312b66ecce3cabb22f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:15Z
  date_updated: 2020-07-14T12:45:40Z
  file_id: '5268'
  file_name: IST-2015-397-v1+1_1471-2148-13-54.pdf
  file_size: 518729
  relation: main_file
file_date_updated: 2020-07-14T12:45:40Z
has_accepted_license: '1'
intvolume: '        13'
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 54 - 54
publication: BMC Evolutionary Biology
publication_status: published
publisher: BioMed Central
publist_id: '4514'
pubrep_id: '397'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Probabilistic models for CRISPR spacer content evolution '
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2013'
...
