---
_id: '2919'
abstract:
- lang: eng
text: The distribution of the phytohormone auxin regulates many aspects of plant
development including growth response to gravity. Gravitropic root curvature involves
coordinated and asymmetric cell elongation between the lower and upper side of
the root, mediated by differential cellular auxin levels. The asymmetry in the
auxin distribution is established and maintained by a spatio-temporal regulation
of the PIN-FORMED (PIN) auxin transporter activity. We provide novel insights
into the complex regulation of PIN abundance and activity during root gravitropism.
We show that PIN2 turnover is differentially regulated on the upper and lower
side of gravistimulated roots by distinct but partially overlapping auxin feedback
mechanisms. In addition to regulating transcription and clathrin-mediated internalization,
auxin also controls PIN abundance at the plasma membrane by promoting their vacuolar
targeting and degradation. This effect of elevated auxin levels requires the activity
of SKP-Cullin-F-box TIR1/AFB (SCF TIR1/AFB)-dependent pathway. Importantly, also
suboptimal auxin levels mediate PIN degradation utilizing the same signalling
pathway. These feedback mechanisms are functionally important during gravitropic
response and ensure fine-tuning of auxin fluxes for maintaining as well as terminating
asymmetric growth.
author:
- first_name: Pawel
full_name: Baster, Pawel
id: 3028BD74-F248-11E8-B48F-1D18A9856A87
last_name: Baster
- first_name: Stéphanie
full_name: Robert, Stéphanie
last_name: Robert
- first_name: Jürgen
full_name: Kleine Vehn, Jürgen
last_name: Kleine Vehn
- first_name: Steffen
full_name: Vanneste, Steffen
last_name: Vanneste
- first_name: Urszula
full_name: Kania, Urszula
id: 4AE5C486-F248-11E8-B48F-1D18A9856A87
last_name: Kania
- first_name: Wim
full_name: Grunewald, Wim
last_name: Grunewald
- first_name: Bert
full_name: De Rybel, Bert
last_name: De Rybel
- first_name: Tom
full_name: Beeckman, Tom
last_name: Beeckman
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Baster P, Robert S, Kleine Vehn J, et al. SCF^TIR1 AFB-auxin signalling regulates
PIN vacuolar trafficking and auxin fluxes during root gravitropism. EMBO Journal.
2013;32(2):260-274. doi:10.1038/emboj.2012.310
apa: Baster, P., Robert, S., Kleine Vehn, J., Vanneste, S., Kania, U., Grunewald,
W., … Friml, J. (2013). SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking
and auxin fluxes during root gravitropism. EMBO Journal. Wiley-Blackwell.
https://doi.org/10.1038/emboj.2012.310
chicago: Baster, Pawel, Stéphanie Robert, Jürgen Kleine Vehn, Steffen Vanneste,
Urszula Kania, Wim Grunewald, Bert De Rybel, Tom Beeckman, and Jiří Friml. “SCF^TIR1
AFB-Auxin Signalling Regulates PIN Vacuolar Trafficking and Auxin Fluxes during
Root Gravitropism.” EMBO Journal. Wiley-Blackwell, 2013. https://doi.org/10.1038/emboj.2012.310.
ieee: P. Baster et al., “SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar
trafficking and auxin fluxes during root gravitropism,” EMBO Journal, vol.
32, no. 2. Wiley-Blackwell, pp. 260–274, 2013.
ista: Baster P, Robert S, Kleine Vehn J, Vanneste S, Kania U, Grunewald W, De Rybel
B, Beeckman T, Friml J. 2013. SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar
trafficking and auxin fluxes during root gravitropism. EMBO Journal. 32(2), 260–274.
mla: Baster, Pawel, et al. “SCF^TIR1 AFB-Auxin Signalling Regulates PIN Vacuolar
Trafficking and Auxin Fluxes during Root Gravitropism.” EMBO Journal, vol.
32, no. 2, Wiley-Blackwell, 2013, pp. 260–74, doi:10.1038/emboj.2012.310.
short: P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald,
B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
date_created: 2018-12-11T12:00:20Z
date_published: 2013-01-23T00:00:00Z
date_updated: 2021-01-12T07:00:41Z
day: '23'
department:
- _id: JiFr
doi: 10.1038/emboj.2012.310
external_id:
pmid:
- '23211744'
intvolume: ' 32'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3553380/
month: '01'
oa: 1
oa_version: Submitted Version
page: 260 - 274
pmid: 1
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3818'
quality_controlled: '1'
scopus_import: 1
status: public
title: SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking and auxin
fluxes during root gravitropism
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2013'
...
---
_id: '2920'
abstract:
- lang: eng
text: Cell polarisation in development is a common and fundamental process underlying
embryo patterning and morphogenesis, and has been extensively studied over the
past years. Our current knowledge of cell polarisation in development is predominantly
based on studies that have analysed polarisation of single cells, such as eggs,
or cellular aggregates with a stable polarising interface, such as cultured epithelial
cells (St Johnston and Ahringer, 2010). However, in embryonic development, particularly
of vertebrates, cell polarisation processes often encompass large numbers of cells
that are placed within moving and proliferating tissues, and undergo mesenchymal-to-epithelial
transitions with a highly complex spatiotemporal choreography. How such intricate
cell polarisation processes in embryonic development are achieved has only started
to be analysed. By using live imaging of neurulation in the transparent zebrafish
embryo, Buckley et al (2012) now describe a novel polarisation strategy by which
cells assemble an apical domain in the part of their cell body that intersects
with the midline of the forming neural rod. This mechanism, along with the previously
described mirror-symmetric divisions (Tawk et al, 2007), is thought to trigger
formation of both neural rod midline and lumen.
author:
- first_name: Julien
full_name: Compagnon, Julien
id: 2E3E0988-F248-11E8-B48F-1D18A9856A87
last_name: Compagnon
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: Compagnon J, Heisenberg C-PJ. Neurulation coordinating cell polarisation and
lumen formation. EMBO Journal. 2013;32(1):1-3. doi:10.1038/emboj.2012.325
apa: Compagnon, J., & Heisenberg, C.-P. J. (2013). Neurulation coordinating
cell polarisation and lumen formation. EMBO Journal. Wiley-Blackwell. https://doi.org/10.1038/emboj.2012.325
chicago: Compagnon, Julien, and Carl-Philipp J Heisenberg. “Neurulation Coordinating
Cell Polarisation and Lumen Formation.” EMBO Journal. Wiley-Blackwell,
2013. https://doi.org/10.1038/emboj.2012.325.
ieee: J. Compagnon and C.-P. J. Heisenberg, “Neurulation coordinating cell polarisation
and lumen formation,” EMBO Journal, vol. 32, no. 1. Wiley-Blackwell, pp.
1–3, 2013.
ista: Compagnon J, Heisenberg C-PJ. 2013. Neurulation coordinating cell polarisation
and lumen formation. EMBO Journal. 32(1), 1–3.
mla: Compagnon, Julien, and Carl-Philipp J. Heisenberg. “Neurulation Coordinating
Cell Polarisation and Lumen Formation.” EMBO Journal, vol. 32, no. 1, Wiley-Blackwell,
2013, pp. 1–3, doi:10.1038/emboj.2012.325.
short: J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.
date_created: 2018-12-11T12:00:20Z
date_published: 2013-01-09T00:00:00Z
date_updated: 2021-01-12T07:00:42Z
day: '09'
department:
- _id: CaHe
doi: 10.1038/emboj.2012.325
external_id:
pmid:
- '23211745'
intvolume: ' 32'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3545307/
month: '01'
oa: 1
oa_version: Submitted Version
page: 1 - 3
pmid: 1
publication: EMBO Journal
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3817'
quality_controlled: '1'
scopus_import: 1
status: public
title: Neurulation coordinating cell polarisation and lumen formation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2013'
...
---
_id: '2926'
abstract:
- lang: eng
text: To fight infectious diseases, host immune defenses are employed at multiple
levels. Sanitary behavior, such as pathogen avoidance and removal, acts as a first
line of defense to prevent infection [1] before activation of the physiological
immune system. Insect societies have evolved a wide range of collective hygiene
measures and intensive health care toward pathogen-exposed group members [2].
One of the most common behaviors is allogrooming, in which nestmates remove infectious
particles from the body surfaces of exposed individuals [3]. Here we show that,
in invasive garden ants, grooming of fungus-exposed brood is effective beyond
the sheer mechanical removal of fungal conidiospores; it also includes chemical
disinfection through the application of poison produced by the ants themselves.
Formic acid is the main active component of the poison. It inhibits fungal growth
of conidiospores remaining on the brood surface after grooming and also those
collected in the mouth of the grooming ant. This dual function is achieved by
uptake of the poison droplet into the mouth through acidopore self-grooming and
subsequent application onto the infectious brood via brood grooming. This extraordinary
behavior extends the current understanding of grooming and the establishment of
social immunity in insect societies.
acknowledgement: "Funding for this project was obtained by the German Research Foundation
(DFG, to S.C.) and the European Research Council (ERC, through an ERC-Starting Grant
to S.C. and an Individual Marie Curie IEF fellowship to L.V.U.).\r\nWe thank Jørgen
Eilenberg, Bernhardt Steinwender, Miriam Stock, and Meghan L. Vyleta for the fungal
strain and its characterization; Volker Witte for chemical information; Eva Sixt
for ant drawings; and Robert Hauschild for help with image analysis. We further
thank Martin Kaltenpoth, Michael Sixt, Jürgen Heinze, and Joachim Ruther for discussion
and Daria Siekhaus, Sophie A.O. Armitage, and Leila Masri for comments on the manuscript.
\r\n"
author:
- first_name: Simon
full_name: Tragust, Simon
id: 35A7A418-F248-11E8-B48F-1D18A9856A87
last_name: Tragust
- first_name: Barbara
full_name: Mitteregger, Barbara
id: 479DDAAC-E9CD-11E9-9B5F-82450873F7A1
last_name: Mitteregger
- first_name: Vanessa
full_name: Barone, Vanessa
id: 419EECCC-F248-11E8-B48F-1D18A9856A87
last_name: Barone
orcid: 0000-0003-2676-3367
- first_name: Matthias
full_name: Konrad, Matthias
id: 46528076-F248-11E8-B48F-1D18A9856A87
last_name: Konrad
- first_name: Line V
full_name: Ugelvig, Line V
id: 3DC97C8E-F248-11E8-B48F-1D18A9856A87
last_name: Ugelvig
orcid: 0000-0003-1832-8883
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Tragust S, Mitteregger B, Barone V, Konrad M, Ugelvig LV, Cremer S. Ants disinfect
fungus-exposed brood by oral uptake and spread of their poison. Current Biology.
2013;23(1):76-82. doi:10.1016/j.cub.2012.11.034
apa: Tragust, S., Mitteregger, B., Barone, V., Konrad, M., Ugelvig, L. V., &
Cremer, S. (2013). Ants disinfect fungus-exposed brood by oral uptake and spread
of their poison. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2012.11.034
chicago: Tragust, Simon, Barbara Mitteregger, Vanessa Barone, Matthias Konrad, Line
V Ugelvig, and Sylvia Cremer. “Ants Disinfect Fungus-Exposed Brood by Oral Uptake
and Spread of Their Poison.” Current Biology. Cell Press, 2013. https://doi.org/10.1016/j.cub.2012.11.034.
ieee: S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L. V. Ugelvig, and S. Cremer,
“Ants disinfect fungus-exposed brood by oral uptake and spread of their poison,”
Current Biology, vol. 23, no. 1. Cell Press, pp. 76–82, 2013.
ista: Tragust S, Mitteregger B, Barone V, Konrad M, Ugelvig LV, Cremer S. 2013.
Ants disinfect fungus-exposed brood by oral uptake and spread of their poison.
Current Biology. 23(1), 76–82.
mla: Tragust, Simon, et al. “Ants Disinfect Fungus-Exposed Brood by Oral Uptake
and Spread of Their Poison.” Current Biology, vol. 23, no. 1, Cell Press,
2013, pp. 76–82, doi:10.1016/j.cub.2012.11.034.
short: S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer,
Current Biology 23 (2013) 76–82.
date_created: 2018-12-11T12:00:23Z
date_published: 2013-01-07T00:00:00Z
date_updated: 2023-09-07T12:05:08Z
day: '07'
department:
- _id: SyCr
- _id: CaHe
doi: 10.1016/j.cub.2012.11.034
ec_funded: 1
intvolume: ' 23'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 76 - 82
project:
- _id: 25DAF0B2-B435-11E9-9278-68D0E5697425
grant_number: CR-118/3-1
name: Host-Parasite Coevolution
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '243071'
name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
Effects'
- _id: 25DDF0F0-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '302004'
name: 'Pathogen Detectors Collective disease defence and pathogen detection abilities
in ant societies: a chemo-neuro-immunological approach'
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '3811'
quality_controlled: '1'
related_material:
record:
- id: '9757'
relation: research_data
status: public
- id: '961'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2013'
...
---
_id: '2939'
abstract:
- lang: eng
text: In this paper, we present the first output-sensitive algorithm to compute
the persistence diagram of a filtered simplicial complex. For any Γ > 0, it
returns only those homology classes with persistence at least Γ. Instead of the
classical reduction via column operations, our algorithm performs rank computations
on submatrices of the boundary matrix. For an arbitrary constant δ ∈ (0, 1), the
running time is O (C (1 - δ) Γ R d (n) log n), where C (1 - δ) Γ is the number
of homology classes with persistence at least (1 - δ) Γ, n is the total number
of simplices in the complex, d its dimension, and R d (n) is the complexity of
computing the rank of an n × n matrix with O (d n) nonzero entries. Depending
on the choice of the rank algorithm, this yields a deterministic O (C (1 - δ)
Γ n 2.376) algorithm, an O (C (1 - δ) Γ n 2.28) Las-Vegas algorithm, or an O (C
(1 - δ) Γ n 2 + ε{lunate}) Monte-Carlo algorithm for an arbitrary ε{lunate} >
0. The space complexity of the Monte-Carlo version is bounded by O (d n) = O (n
log n).
acknowledgement: The authors thank Herbert Edelsbrunner for many helpful discussions
and suggestions. Moreover, they are grateful for the careful reviews that helped
to improve the quality of the paper.
author:
- first_name: Chao
full_name: Chen, Chao
id: 3E92416E-F248-11E8-B48F-1D18A9856A87
last_name: Chen
- first_name: Michael
full_name: Kerber, Michael
id: 36E4574A-F248-11E8-B48F-1D18A9856A87
last_name: Kerber
orcid: 0000-0002-8030-9299
citation:
ama: 'Chen C, Kerber M. An output sensitive algorithm for persistent homology. Computational
Geometry: Theory and Applications. 2013;46(4):435-447. doi:10.1016/j.comgeo.2012.02.010'
apa: 'Chen, C., & Kerber, M. (2013). An output sensitive algorithm for persistent
homology. Computational Geometry: Theory and Applications. Elsevier. https://doi.org/10.1016/j.comgeo.2012.02.010'
chicago: 'Chen, Chao, and Michael Kerber. “An Output Sensitive Algorithm for Persistent
Homology.” Computational Geometry: Theory and Applications. Elsevier, 2013.
https://doi.org/10.1016/j.comgeo.2012.02.010.'
ieee: 'C. Chen and M. Kerber, “An output sensitive algorithm for persistent homology,”
Computational Geometry: Theory and Applications, vol. 46, no. 4. Elsevier,
pp. 435–447, 2013.'
ista: 'Chen C, Kerber M. 2013. An output sensitive algorithm for persistent homology.
Computational Geometry: Theory and Applications. 46(4), 435–447.'
mla: 'Chen, Chao, and Michael Kerber. “An Output Sensitive Algorithm for Persistent
Homology.” Computational Geometry: Theory and Applications, vol. 46, no.
4, Elsevier, 2013, pp. 435–47, doi:10.1016/j.comgeo.2012.02.010.'
short: 'C. Chen, M. Kerber, Computational Geometry: Theory and Applications 46 (2013)
435–447.'
date_created: 2018-12-11T12:00:27Z
date_published: 2013-05-01T00:00:00Z
date_updated: 2023-02-23T11:24:10Z
day: '01'
department:
- _id: HeEd
doi: 10.1016/j.comgeo.2012.02.010
intvolume: ' 46'
issue: '4'
language:
- iso: eng
month: '05'
oa_version: None
page: 435 - 447
publication: 'Computational Geometry: Theory and Applications'
publication_status: published
publisher: Elsevier
publist_id: '3796'
quality_controlled: '1'
related_material:
record:
- id: '3367'
relation: earlier_version
status: public
scopus_import: 1
status: public
title: An output sensitive algorithm for persistent homology
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 46
year: '2013'
...
---
_id: '2940'
abstract:
- lang: eng
text: "A chain rule for an entropy notion H(.) states that the entropy H(X) of a
variable X decreases by at most l if conditioned on an l-bit string A, i.e., H(X|A)>=
H(X)-l. More generally, it satisfies a chain rule for conditional entropy if H(X|Y,A)>=
H(X|Y)-l.\r\n\r\nAll natural information theoretic entropy notions we are aware
of (like Shannon or min-entropy) satisfy some kind of chain rule for conditional
entropy. Moreover, many computational entropy notions (like Yao entropy, unpredictability
entropy and several variants of HILL entropy) satisfy the chain rule for conditional
entropy, though here not only the quantity decreases by l, but also the quality
of the entropy decreases exponentially in l. However, for \r\nthe standard notion
of conditional HILL entropy (the computational equivalent of min-entropy) the
existence of such a rule was unknown so far.\r\n\r\nIn this paper, we prove that
for conditional HILL entropy no meaningful chain rule exists, assuming the existence
of one-way permutations: there exist distributions X,Y,A, where A is a distribution
over a single bit, but $H(X|Y)>>H(X|Y,A)$, even if we simultaneously allow
for a massive degradation in the quality of the entropy.\r\n\r\nThe idea underlying
our construction is based on a surprising connection between the chain rule for
HILL entropy and deniable encryption. "
alternative_title:
- LNCS
author:
- first_name: Stephan
full_name: Krenn, Stephan
id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
last_name: Krenn
orcid: 0000-0003-2835-9093
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Akshay
full_name: Wadia, Akshay
last_name: Wadia
citation:
ama: 'Krenn S, Pietrzak KZ, Wadia A. A counterexample to the chain rule for conditional
HILL entropy, and what deniable encryption has to do with it. In: Sahai A, ed.
Vol 7785. Springer; 2013:23-39. doi:10.1007/978-3-642-36594-2_2'
apa: 'Krenn, S., Pietrzak, K. Z., & Wadia, A. (2013). A counterexample to the
chain rule for conditional HILL entropy, and what deniable encryption has to do
with it. In A. Sahai (Ed.) (Vol. 7785, pp. 23–39). Presented at the TCC: Theory
of Cryptography Conference, Tokyo, Japan: Springer. https://doi.org/10.1007/978-3-642-36594-2_2'
chicago: Krenn, Stephan, Krzysztof Z Pietrzak, and Akshay Wadia. “A Counterexample
to the Chain Rule for Conditional HILL Entropy, and What Deniable Encryption Has
to Do with It.” edited by Amit Sahai, 7785:23–39. Springer, 2013. https://doi.org/10.1007/978-3-642-36594-2_2.
ieee: 'S. Krenn, K. Z. Pietrzak, and A. Wadia, “A counterexample to the chain rule
for conditional HILL entropy, and what deniable encryption has to do with it,”
presented at the TCC: Theory of Cryptography Conference, Tokyo, Japan, 2013, vol.
7785, pp. 23–39.'
ista: 'Krenn S, Pietrzak KZ, Wadia A. 2013. A counterexample to the chain rule for
conditional HILL entropy, and what deniable encryption has to do with it. TCC:
Theory of Cryptography Conference, LNCS, vol. 7785, 23–39.'
mla: Krenn, Stephan, et al. A Counterexample to the Chain Rule for Conditional
HILL Entropy, and What Deniable Encryption Has to Do with It. Edited by Amit
Sahai, vol. 7785, Springer, 2013, pp. 23–39, doi:10.1007/978-3-642-36594-2_2.
short: S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp.
23–39.
conference:
end_date: 2013-03-06
location: Tokyo, Japan
name: 'TCC: Theory of Cryptography Conference'
start_date: 2013-03-03
date_created: 2018-12-11T12:00:27Z
date_published: 2013-01-29T00:00:00Z
date_updated: 2023-02-23T10:00:43Z
day: '29'
ddc:
- '000'
department:
- _id: KrPi
doi: 10.1007/978-3-642-36594-2_2
ec_funded: 1
editor:
- first_name: Amit
full_name: Sahai, Amit
last_name: Sahai
file:
- access_level: open_access
checksum: beb0cc1c0579da2d2e84394230a5da78
content_type: application/pdf
creator: dernst
date_created: 2019-01-22T14:11:11Z
date_updated: 2020-07-14T12:45:54Z
file_id: '5875'
file_name: 2013_LNCS_Krenn.pdf
file_size: 414823
relation: main_file
file_date_updated: 2020-07-14T12:45:54Z
has_accepted_license: '1'
intvolume: ' 7785'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 23 - 39
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '259668'
name: Provable Security for Physical Cryptography
publication_status: published
publisher: Springer
publist_id: '3795'
quality_controlled: '1'
related_material:
record:
- id: '1479'
relation: later_version
status: public
scopus_import: 1
status: public
title: A counterexample to the chain rule for conditional HILL entropy, and what deniable
encryption has to do with it
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7785
year: '2013'
...
---
_id: '2944'
abstract:
- lang: eng
text: 'We propose a two-step procedure for estimating multiple migration rates in
an approximate Bayesian computation (ABC) framework, accounting for global nuisance
parameters. The approach is not limited to migration, but generally of interest
for inference problems with multiple parameters and a modular structure (e.g.
independent sets of demes or loci). We condition on a known, but complex demographic
model of a spatially subdivided population, motivated by the reintroduction of
Alpine ibex (Capra ibex) into Switzerland. In the first step, the global parameters
ancestral mutation rate and male mating skew have been estimated for the whole
population in Aeschbacher et al. (Genetics 2012; 192: 1027). In the second step,
we estimate in this study the migration rates independently for clusters of demes
putatively connected by migration. For large clusters (many migration rates),
ABC faces the problem of too many summary statistics. We therefore assess by simulation
if estimation per pair of demes is a valid alternative. We find that the trade-off
between reduced dimensionality for the pairwise estimation on the one hand and
lower accuracy due to the assumption of pairwise independence on the other depends
on the number of migration rates to be inferred: the accuracy of the pairwise
approach increases with the number of parameters, relative to the joint estimation
approach. To distinguish between low and zero migration, we perform ABC-type model
comparison between a model with migration and one without. Applying the approach
to microsatellite data from Alpine ibex, we find no evidence for substantial gene
flow via migration, except for one pair of demes in one direction.'
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This study has made use of the computational resources provided by
IST Austria and the Edinburgh Compute and Data Facility (ECDF; http://www.ecdf.ed.ac.uk).
The ECDF is partially supported by the eDIKT initiative (http://www.edikt.org.uk).
S.A. acknowledges financial support by IST Austria, the Janggen-Pöhn Foundation,
St. Gallen, the Roche Research Foundation, Basel, the University of Edinburgh in
the form of a Torrance Studentship, and the Austrian Science Fund (FWF P21305-N13).
author:
- first_name: Simon
full_name: Aeschbacher, Simon
id: 2D35326E-F248-11E8-B48F-1D18A9856A87
last_name: Aeschbacher
- first_name: Andreas
full_name: Futschik, Andreas
last_name: Futschik
- first_name: Mark
full_name: Beaumont, Mark
last_name: Beaumont
citation:
ama: 'Aeschbacher S, Futschik A, Beaumont M. Approximate Bayesian computation for
modular inference problems with many parameters: the example of migration rates.
. Molecular Ecology. 2013;22(4):987-1002. doi:10.1111/mec.12165'
apa: 'Aeschbacher, S., Futschik, A., & Beaumont, M. (2013). Approximate Bayesian
computation for modular inference problems with many parameters: the example of
migration rates. . Molecular Ecology. Wiley-Blackwell. https://doi.org/10.1111/mec.12165'
chicago: 'Aeschbacher, Simon, Andreas Futschik, and Mark Beaumont. “Approximate
Bayesian Computation for Modular Inference Problems with Many Parameters: The
Example of Migration Rates. .” Molecular Ecology. Wiley-Blackwell, 2013.
https://doi.org/10.1111/mec.12165.'
ieee: 'S. Aeschbacher, A. Futschik, and M. Beaumont, “Approximate Bayesian computation
for modular inference problems with many parameters: the example of migration
rates. ,” Molecular Ecology, vol. 22, no. 4. Wiley-Blackwell, pp. 987–1002,
2013.'
ista: 'Aeschbacher S, Futschik A, Beaumont M. 2013. Approximate Bayesian computation
for modular inference problems with many parameters: the example of migration
rates. . Molecular Ecology. 22(4), 987–1002.'
mla: 'Aeschbacher, Simon, et al. “Approximate Bayesian Computation for Modular Inference
Problems with Many Parameters: The Example of Migration Rates. .” Molecular
Ecology, vol. 22, no. 4, Wiley-Blackwell, 2013, pp. 987–1002, doi:10.1111/mec.12165.'
short: S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
date_created: 2018-12-11T12:00:28Z
date_published: 2013-02-01T00:00:00Z
date_updated: 2023-02-23T14:07:19Z
day: '01'
department:
- _id: NiBa
doi: 10.1111/mec.12165
intvolume: ' 22'
issue: '4'
language:
- iso: eng
month: '02'
oa_version: None
page: 987 - 1002
publication: Molecular Ecology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '3788'
quality_controlled: '1'
related_material:
record:
- id: '9758'
relation: research_data
status: public
scopus_import: 1
status: public
title: 'Approximate Bayesian computation for modular inference problems with many
parameters: the example of migration rates. '
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2013'
...
---
_id: '2948'
abstract:
- lang: eng
text: 'Many visual datasets are traditionally used to analyze the performance of
different learning techniques. The evaluation is usually done within each dataset,
therefore it is questionable if such results are a reliable indicator of true
generalization ability. We propose here an algorithm to exploit the existing data
resources when learning on a new multiclass problem. Our main idea is to identify
an image representation that decomposes orthogonally into two subspaces: a part
specific to each dataset, and a part generic to, and therefore shared between,
all the considered source sets. This allows us to use the generic representation
as un-biased reference knowledge for a novel classification task. By casting the
method in the multi-view setting, we also make it possible to use different features
for different databases. We call the algorithm MUST, Multitask Unaligned Shared
knowledge Transfer. Through extensive experiments on five public datasets, we
show that MUST consistently improves the cross-datasets generalization performance.'
acknowledgement: This work was supported by the PASCAL 2 Network of Excellence (TT)
and by the Newton International Fellowship (NQ)
alternative_title:
- LNCS
author:
- first_name: Tatiana
full_name: Tommasi, Tatiana
last_name: Tommasi
- first_name: Novi
full_name: Quadrianto, Novi
last_name: Quadrianto
- first_name: Barbara
full_name: Caputo, Barbara
last_name: Caputo
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Tommasi T, Quadrianto N, Caputo B, Lampert C. Beyond dataset bias: Multi-task
unaligned shared knowledge transfer. 2013;7724:1-15. doi:10.1007/978-3-642-37331-2_1'
apa: 'Tommasi, T., Quadrianto, N., Caputo, B., & Lampert, C. (2013). Beyond
dataset bias: Multi-task unaligned shared knowledge transfer. Presented at the
ACCV: Asian Conference on Computer Vision, Daejeon, Korea: Springer. https://doi.org/10.1007/978-3-642-37331-2_1'
chicago: 'Tommasi, Tatiana, Novi Quadrianto, Barbara Caputo, and Christoph Lampert.
“Beyond Dataset Bias: Multi-Task Unaligned Shared Knowledge Transfer.” Lecture
Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-37331-2_1.'
ieee: 'T. Tommasi, N. Quadrianto, B. Caputo, and C. Lampert, “Beyond dataset bias:
Multi-task unaligned shared knowledge transfer,” vol. 7724. Springer, pp. 1–15,
2013.'
ista: 'Tommasi T, Quadrianto N, Caputo B, Lampert C. 2013. Beyond dataset bias:
Multi-task unaligned shared knowledge transfer. 7724, 1–15.'
mla: 'Tommasi, Tatiana, et al. Beyond Dataset Bias: Multi-Task Unaligned Shared
Knowledge Transfer. Vol. 7724, Springer, 2013, pp. 1–15, doi:10.1007/978-3-642-37331-2_1.'
short: T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
conference:
end_date: 2012-11-09
location: Daejeon, Korea
name: 'ACCV: Asian Conference on Computer Vision'
start_date: 2012-11-05
date_created: 2018-12-11T12:00:30Z
date_published: 2013-04-04T00:00:00Z
date_updated: 2020-08-11T10:09:54Z
day: '04'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.1007/978-3-642-37331-2_1
file:
- access_level: open_access
checksum: a0a7234a89e2192af655b0d0ae3bf445
content_type: application/pdf
creator: dernst
date_created: 2019-01-22T14:03:11Z
date_updated: 2020-07-14T12:45:55Z
file_id: '5874'
file_name: 2012_ACCV_Tommasi.pdf
file_size: 1513620
relation: main_file
file_date_updated: 2020-07-14T12:45:55Z
has_accepted_license: '1'
intvolume: ' 7724'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 1 - 15
publication_status: published
publisher: Springer
publist_id: '3784'
quality_controlled: '1'
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: 'Beyond dataset bias: Multi-task unaligned shared knowledge transfer'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7724
year: '2013'
...
---
_id: '2973'
abstract:
- lang: eng
text: "Efficient zero-knowledge proofs of knowledge (ZK-PoK) are basic building
blocks of many practical cryptographic applications such as identification schemes,
group signatures, and secure multiparty computation. Currently, first applications
that critically rely on ZK-PoKs are being deployed in the real world. The most
prominent example is Direct Anonymous Attestation (DAA), which was adopted by
the Trusted Computing Group (TCG) and implemented as one of the functionalities
of the cryptographic Trusted Platform Module (TPM) chip.\n\nImplementing systems
using ZK-PoK turns out to be challenging, since ZK-PoK are, loosely speaking,
significantly more complex than standard crypto primitives, such as encryption
and signature schemes. As a result, implementation cycles of ZK-PoK are time-consuming
and error-prone, in particular for developers with minor or no cryptographic skills.
\n\nIn this paper we report on our ongoing and future research vision with the
goal to bring ZK-PoK to practice by making them accessible to crypto and security
engineers. To this end we are developing compilers and related tools that support
and partially automate the design, implementation, verification and secure implementation
of ZK-PoK protocols."
acknowledgement: This work is being performed within the FP7 EU project CACE (Computer
Aided Cryptography Engineering).
alternative_title:
- LNCS
author:
- first_name: Endre
full_name: Bangerter, Endre
last_name: Bangerter
- first_name: Stefania
full_name: Barzan, Stefania
last_name: Barzan
- first_name: Stephan
full_name: Stephan Krenn
id: 329FCCF0-F248-11E8-B48F-1D18A9856A87
last_name: Krenn
orcid: 0000-0003-2835-9093
- first_name: Ahmad
full_name: Sadeghi, Ahmad-Reza
last_name: Sadeghi
- first_name: Thomas
full_name: Schneider, Thomas
last_name: Schneider
- first_name: Joe
full_name: Tsay, Joe-Kai
last_name: Tsay
citation:
ama: 'Bangerter E, Barzan S, Krenn S, Sadeghi A, Schneider T, Tsay J. Bringing Zero-Knowledge
Proofs of Knowledge to Practice. In: Christianson B, Malcolm J, Matyas V, Roe
M, eds. Vol 7028. Springer; 2013:51-62. doi:10.1007/978-3-642-36213-2_9'
apa: 'Bangerter, E., Barzan, S., Krenn, S., Sadeghi, A., Schneider, T., & Tsay,
J. (2013). Bringing Zero-Knowledge Proofs of Knowledge to Practice. In B. Christianson,
J. Malcolm, V. Matyas, & M. Roe (Eds.) (Vol. 7028, pp. 51–62). Presented at
the SPW: Security Protocols Workshop, Springer. https://doi.org/10.1007/978-3-642-36213-2_9'
chicago: Bangerter, Endre, Stefania Barzan, Stephan Krenn, Ahmad Sadeghi, Thomas
Schneider, and Joe Tsay. “Bringing Zero-Knowledge Proofs of Knowledge to Practice.”
edited by Bruce Christianson, James Malcolm, Vashek Matyas, and Michael Roe, 7028:51–62.
Springer, 2013. https://doi.org/10.1007/978-3-642-36213-2_9.
ieee: 'E. Bangerter, S. Barzan, S. Krenn, A. Sadeghi, T. Schneider, and J. Tsay,
“Bringing Zero-Knowledge Proofs of Knowledge to Practice,” presented at the SPW:
Security Protocols Workshop, 2013, vol. 7028, pp. 51–62.'
ista: 'Bangerter E, Barzan S, Krenn S, Sadeghi A, Schneider T, Tsay J. 2013. Bringing
Zero-Knowledge Proofs of Knowledge to Practice. SPW: Security Protocols Workshop,
LNCS, vol. 7028, 51–62.'
mla: Bangerter, Endre, et al. Bringing Zero-Knowledge Proofs of Knowledge to
Practice. Edited by Bruce Christianson et al., vol. 7028, Springer, 2013,
pp. 51–62, doi:10.1007/978-3-642-36213-2_9.
short: E. Bangerter, S. Barzan, S. Krenn, A. Sadeghi, T. Schneider, J. Tsay, in:,
B. Christianson, J. Malcolm, V. Matyas, M. Roe (Eds.), Springer, 2013, pp. 51–62.
conference:
name: 'SPW: Security Protocols Workshop'
date_created: 2018-12-11T12:00:38Z
date_published: 2013-01-08T00:00:00Z
date_updated: 2021-01-12T07:40:10Z
day: '08'
doi: 10.1007/978-3-642-36213-2_9
editor:
- first_name: Bruce
full_name: Christianson, Bruce
last_name: Christianson
- first_name: James
full_name: Malcolm, James A.
last_name: Malcolm
- first_name: Vashek
full_name: Matyas, Vashek
last_name: Matyas
- first_name: Michael
full_name: Roe, Michael
last_name: Roe
extern: 1
intvolume: ' 7028'
main_file_link:
- open_access: '1'
url: http://eprint.iacr.org/2009/211.pdf
month: '01'
oa: 1
page: 51 - 62
publication_status: published
publisher: Springer
publist_id: '3732'
quality_controlled: 0
status: public
title: Bringing Zero-Knowledge Proofs of Knowledge to Practice
type: conference
volume: 7028
year: '2013'
...
---
_id: '3116'
abstract:
- lang: eng
text: Multithreaded programs coordinate their interaction through synchronization
primitives like mutexes and semaphores, which are managed by an OS-provided resource
manager. We propose algorithms for the automatic construction of code-aware resource
managers for multithreaded embedded applications. Such managers use knowledge
about the structure and resource usage (mutex and semaphore usage) of the threads
to guarantee deadlock freedom and progress while managing resources in an efficient
way. Our algorithms compute managers as winning strategies in certain infinite
games, and produce a compact code description of these strategies. We have implemented
the algorithms in the tool Cynthesis. Given a multithreaded program in C, the
tool produces C code implementing a code-aware resource manager. We show in experiments
that Cynthesis produces compact resource managers within a few minutes on a set
of embedded benchmarks with up to 6 threads. © 2012 Springer Science+Business
Media, LLC.
acknowledgement: This research was supported in part by the National Science Foundation
CAREER award CCR-0132780, by the ONR grant N00014-02-1-0671, by the National Science
Foundation grants CCR-0427202 and CCR-0234690, and by the ARP award TO.030.MM.D.
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Luca
full_name: De Alfaro, Luca
last_name: De Alfaro
- first_name: Marco
full_name: Faella, Marco
last_name: Faella
- first_name: Ritankar
full_name: Majumdar, Ritankar
last_name: Majumdar
- first_name: Vishwanath
full_name: Raman, Vishwanath
last_name: Raman
citation:
ama: Chatterjee K, De Alfaro L, Faella M, Majumdar R, Raman V. Code aware resource
management. Formal Methods in System Design. 2013;42(2):142-174. doi:10.1007/s10703-012-0170-4
apa: Chatterjee, K., De Alfaro, L., Faella, M., Majumdar, R., & Raman, V. (2013).
Code aware resource management. Formal Methods in System Design. Springer.
https://doi.org/10.1007/s10703-012-0170-4
chicago: Chatterjee, Krishnendu, Luca De Alfaro, Marco Faella, Ritankar Majumdar,
and Vishwanath Raman. “Code Aware Resource Management.” Formal Methods in System
Design. Springer, 2013. https://doi.org/10.1007/s10703-012-0170-4.
ieee: K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, and V. Raman, “Code aware
resource management,” Formal Methods in System Design, vol. 42, no. 2.
Springer, pp. 142–174, 2013.
ista: Chatterjee K, De Alfaro L, Faella M, Majumdar R, Raman V. 2013. Code aware
resource management. Formal Methods in System Design. 42(2), 142–174.
mla: Chatterjee, Krishnendu, et al. “Code Aware Resource Management.” Formal
Methods in System Design, vol. 42, no. 2, Springer, 2013, pp. 142–74, doi:10.1007/s10703-012-0170-4.
short: K. Chatterjee, L. De Alfaro, M. Faella, R. Majumdar, V. Raman, Formal Methods
in System Design 42 (2013) 142–174.
date_created: 2018-12-11T12:01:29Z
date_published: 2013-04-01T00:00:00Z
date_updated: 2021-01-12T07:41:10Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/s10703-012-0170-4
intvolume: ' 42'
issue: '2'
language:
- iso: eng
month: '04'
oa_version: None
page: 142 - 174
publication: Formal Methods in System Design
publication_status: published
publisher: Springer
publist_id: '3583'
quality_controlled: '1'
scopus_import: 1
status: public
title: Code aware resource management
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 42
year: '2013'
...
---
_id: '3261'
abstract:
- lang: eng
text: Cells in a developing embryo have no direct way of "measuring" their
physical position. Through a variety of processes, however, the expression levels
of multiple genes come to be correlated with position, and these expression levels
thus form a code for "positional information." We show how to measure
this information, in bits, using the gap genes in the Drosophila embryo as an
example. Individual genes carry nearly two bits of information, twice as much
as expected if the expression patterns consisted only of on/off domains separated
by sharp boundaries. Taken together, four gap genes carry enough information to
define a cell's location with an error bar of ~1% along the anterior-posterior
axis of the embryo. This precision is nearly enough for each cell to have a unique
identity, which is the maximum information the system can use, and is nearly constant
along the length of the embryo. We argue that this constancy is a signature of
optimality in the transmission of information from primary morphogen inputs to
the output of the gap gene network.
author:
- first_name: Julien
full_name: Dubuis, Julien
last_name: Dubuis
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: Eric
full_name: Wieschaus, Eric
last_name: Wieschaus
- first_name: Thomas
full_name: Gregor, Thomas
last_name: Gregor
- first_name: William
full_name: Bialek, William
last_name: Bialek
citation:
ama: Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. Positional information,
in bits. PNAS. 2013;110(41):16301-16308. doi:10.1073/pnas.1315642110
apa: Dubuis, J., Tkačik, G., Wieschaus, E., Gregor, T., & Bialek, W. (2013).
Positional information, in bits. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1315642110
chicago: Dubuis, Julien, Gašper Tkačik, Eric Wieschaus, Thomas Gregor, and William
Bialek. “Positional Information, in Bits.” PNAS. National Academy of Sciences,
2013. https://doi.org/10.1073/pnas.1315642110.
ieee: J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, and W. Bialek, “Positional
information, in bits,” PNAS, vol. 110, no. 41. National Academy of Sciences,
pp. 16301–16308, 2013.
ista: Dubuis J, Tkačik G, Wieschaus E, Gregor T, Bialek W. 2013. Positional information,
in bits. PNAS. 110(41), 16301–16308.
mla: Dubuis, Julien, et al. “Positional Information, in Bits.” PNAS, vol.
110, no. 41, National Academy of Sciences, 2013, pp. 16301–08, doi:10.1073/pnas.1315642110.
short: J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013)
16301–16308.
date_created: 2018-12-11T12:02:19Z
date_published: 2013-10-08T00:00:00Z
date_updated: 2021-01-12T07:42:13Z
day: '08'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1073/pnas.1315642110
external_id:
pmid:
- '24089448'
file:
- access_level: open_access
checksum: ecd859fe52a562193027d428b5524a8d
content_type: application/pdf
creator: dernst
date_created: 2019-01-22T13:53:23Z
date_updated: 2020-07-14T12:46:06Z
file_id: '5873'
file_name: 2013_PNAS_Dubuis.pdf
file_size: 1670548
relation: main_file
file_date_updated: 2020-07-14T12:46:06Z
has_accepted_license: '1'
intvolume: ' 110'
issue: '41'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 16301 - 16308
pmid: 1
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '3387'
quality_controlled: '1'
scopus_import: 1
status: public
title: Positional information, in bits
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 110
year: '2013'
...
---
_id: '331'
abstract:
- lang: eng
text: We report a procedure to prepare highly monodisperse copper telluride nanocubes,
nanoplates, and nanorods. The procedure is based on the reaction of a copper salt
with trioctylphosphine telluride in the presence of lithium bis(trimethylsilyl)amide
and oleylamine. CuTe nanocrystals display a strong near-infrared optical absorption
associated with localized surface plasmon resonances. We exploit this plasmon
resonance for the design of surface-enhanced Raman scattering sensors for unconventional
optical probes. Furthermore, we also report here our preliminary analysis of the
use of CuTe nanocrystals as cytotoxic and photothermal agents.
article_processing_charge: No
article_type: original
author:
- first_name: Wenhua
full_name: Li, Wenhua
last_name: Li
- first_name: Reza
full_name: Zamani, Reza
last_name: Zamani
- first_name: Pilar
full_name: Rivera Gil, Pilar
last_name: Rivera Gil
- first_name: Beatriz
full_name: Pelaz, Beatriz
last_name: Pelaz
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Doris
full_name: Cadavid, Doris
last_name: Cadavid
- first_name: Alexey
full_name: Shavel, Alexey
last_name: Shavel
- first_name: Ramon
full_name: Alvarez Puebla, Ramon
last_name: Alvarez Puebla
- first_name: Wolfgang
full_name: Parak, Wolfgang
last_name: Parak
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: 'Li W, Zamani R, Rivera Gil P, et al. CuTe nanocrystals: Shape and size control,
plasmonic properties, and use as SERS probes and photothermal agents. Journal
of the American Chemical Society. 2013;135(19):7098-7101. doi:10.1021/ja401428e'
apa: 'Li, W., Zamani, R., Rivera Gil, P., Pelaz, B., Ibáñez, M., Cadavid, D., …
Cabot, A. (2013). CuTe nanocrystals: Shape and size control, plasmonic properties,
and use as SERS probes and photothermal agents. Journal of the American Chemical
Society. ACS. https://doi.org/10.1021/ja401428e'
chicago: 'Li, Wenhua, Reza Zamani, Pilar Rivera Gil, Beatriz Pelaz, Maria Ibáñez,
Doris Cadavid, Alexey Shavel, et al. “CuTe Nanocrystals: Shape and Size Control,
Plasmonic Properties, and Use as SERS Probes and Photothermal Agents.” Journal
of the American Chemical Society. ACS, 2013. https://doi.org/10.1021/ja401428e.'
ieee: 'W. Li et al., “CuTe nanocrystals: Shape and size control, plasmonic
properties, and use as SERS probes and photothermal agents,” Journal of the
American Chemical Society, vol. 135, no. 19. ACS, pp. 7098–7101, 2013.'
ista: 'Li W, Zamani R, Rivera Gil P, Pelaz B, Ibáñez M, Cadavid D, Shavel A, Alvarez
Puebla R, Parak W, Arbiol J, Cabot A. 2013. CuTe nanocrystals: Shape and size
control, plasmonic properties, and use as SERS probes and photothermal agents.
Journal of the American Chemical Society. 135(19), 7098–7101.'
mla: 'Li, Wenhua, et al. “CuTe Nanocrystals: Shape and Size Control, Plasmonic Properties,
and Use as SERS Probes and Photothermal Agents.” Journal of the American Chemical
Society, vol. 135, no. 19, ACS, 2013, pp. 7098–101, doi:10.1021/ja401428e.'
short: W. Li, R. Zamani, P. Rivera Gil, B. Pelaz, M. Ibáñez, D. Cadavid, A. Shavel,
R. Alvarez Puebla, W. Parak, J. Arbiol, A. Cabot, Journal of the American Chemical
Society 135 (2013) 7098–7101.
date_created: 2018-12-11T11:45:51Z
date_published: 2013-04-30T00:00:00Z
date_updated: 2021-01-12T07:42:33Z
day: '30'
doi: 10.1021/ja401428e
extern: '1'
intvolume: ' 135'
issue: '19'
language:
- iso: eng
month: '04'
oa_version: None
page: 7098 - 7101
publication: Journal of the American Chemical Society
publication_status: published
publisher: ACS
publist_id: '7521'
quality_controlled: '1'
status: public
title: 'CuTe nanocrystals: Shape and size control, plasmonic properties, and use as
SERS probes and photothermal agents'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2013'
...
---
_id: '3321'
author:
- first_name: Novi
full_name: Quadrianto, Novi
last_name: Quadrianto
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Quadrianto N, Lampert C. Kernel based learning. In: Dubitzky W, Wolkenhauer
O, Cho K, Yokota H, eds. Encyclopedia of Systems Biology. Vol 3. Springer;
2013:1069-1069. doi:10.1007/978-1-4419-9863-7_604'
apa: Quadrianto, N., & Lampert, C. (2013). Kernel based learning. In W. Dubitzky,
O. Wolkenhauer, K. Cho, & H. Yokota (Eds.), Encyclopedia of Systems Biology
(Vol. 3, pp. 1069–1069). Springer. https://doi.org/10.1007/978-1-4419-9863-7_604
chicago: Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” In Encyclopedia
of Systems Biology, edited by Werner Dubitzky, Olaf Wolkenhauer, Kwang Cho,
and Hiroki Yokota, 3:1069–1069. Springer, 2013. https://doi.org/10.1007/978-1-4419-9863-7_604.
ieee: N. Quadrianto and C. Lampert, “Kernel based learning,” in Encyclopedia
of Systems Biology, vol. 3, W. Dubitzky, O. Wolkenhauer, K. Cho, and H. Yokota,
Eds. Springer, 2013, pp. 1069–1069.
ista: 'Quadrianto N, Lampert C. 2013.Kernel based learning. In: Encyclopedia of
Systems Biology. vol. 3, 1069–1069.'
mla: Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” Encyclopedia
of Systems Biology, edited by Werner Dubitzky et al., vol. 3, Springer, 2013,
pp. 1069–1069, doi:10.1007/978-1-4419-9863-7_604.
short: N. Quadrianto, C. Lampert, in:, W. Dubitzky, O. Wolkenhauer, K. Cho, H. Yokota
(Eds.), Encyclopedia of Systems Biology, Springer, 2013, pp. 1069–1069.
date_created: 2018-12-11T12:02:39Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:38Z
day: '01'
department:
- _id: ChLa
doi: 10.1007/978-1-4419-9863-7_604
editor:
- first_name: Werner
full_name: Dubitzky, Werner
last_name: Dubitzky
- first_name: Olaf
full_name: Wolkenhauer, Olaf
last_name: Wolkenhauer
- first_name: Kwang
full_name: Cho, Kwang
last_name: Cho
- first_name: Hiroki
full_name: Yokota, Hiroki
last_name: Yokota
intvolume: ' 3'
language:
- iso: eng
month: '01'
oa_version: None
page: 1069 - 1069
publication: Encyclopedia of Systems Biology
publication_status: published
publisher: Springer
publist_id: '3314'
quality_controlled: '1'
status: public
title: Kernel based learning
type: encyclopedia_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2013'
...
---
_id: '10749'
abstract:
- lang: eng
text: Fluxoid quantization provides a direct means to study phase coherence. In
cuprate superconductors, there have been observations which suggest that phase
coherent superconducting fluctuations may persist at temperatures significantly
above Tc. The focus of this work is to study the vortex states in mesoscopic cuprate
superconducting samples to directly probe phase coherence over a wide range of
temperatures. We present cantilever torque susceptometry measurements of micron
and sub-micron size Bi2212 rings and disks. The high sensitivity of this technique
allowed observation of transitions between different fluxoid states of a single
ring, and the discrete vortex states of micron size disks. The dependence of magnetic
susceptibility on diameter and wall thickness of the ring was investigated. Measurements
were made at different values of the in-plane magnetic field, and over a wide
range of temperatures.
acknowledgement: This work was supported by the Center for Emergent Superconductivity,
an Energy Frontier Research Center funded by the US DOE, Office of Science.
alternative_title:
- Bulletin of the American Physical Society
article_number: N36.00001
article_processing_charge: No
author:
- first_name: Hryhoriy
full_name: Polshyn, Hryhoriy
id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48
last_name: Polshyn
orcid: 0000-0001-8223-8896
- first_name: Raffi
full_name: Budakian, Raffi
last_name: Budakian
- first_name: Genda
full_name: Gu, Genda
last_name: Gu
citation:
ama: 'Polshyn H, Budakian R, Gu G. Cantilever micro-susceptometry of mesoscopic
Bi2212 samples. In: APS March Meeting 2013. Vol 58. American Physical Society;
2013.'
apa: 'Polshyn, H., Budakian, R., & Gu, G. (2013). Cantilever micro-susceptometry
of mesoscopic Bi2212 samples. In APS March Meeting 2013 (Vol. 58). Baltimore,
MD, United States: American Physical Society.'
chicago: Polshyn, Hryhoriy, Raffi Budakian, and Genda Gu. “Cantilever Micro-Susceptometry
of Mesoscopic Bi2212 Samples.” In APS March Meeting 2013, Vol. 58. American
Physical Society, 2013.
ieee: H. Polshyn, R. Budakian, and G. Gu, “Cantilever micro-susceptometry of mesoscopic
Bi2212 samples,” in APS March Meeting 2013, Baltimore, MD, United States,
2013, vol. 58, no. 1.
ista: 'Polshyn H, Budakian R, Gu G. 2013. Cantilever micro-susceptometry of mesoscopic
Bi2212 samples. APS March Meeting 2013. APS: American Physical Society, Bulletin
of the American Physical Society, vol. 58, N36.00001.'
mla: Polshyn, Hryhoriy, et al. “Cantilever Micro-Susceptometry of Mesoscopic Bi2212
Samples.” APS March Meeting 2013, vol. 58, no. 1, N36.00001, American Physical
Society, 2013.
short: H. Polshyn, R. Budakian, G. Gu, in:, APS March Meeting 2013, American Physical
Society, 2013.
conference:
end_date: 2013-03-22
location: Baltimore, MD, United States
name: 'APS: American Physical Society'
start_date: 2013-03-18
date_created: 2022-02-08T10:34:29Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2022-02-08T10:48:06Z
day: '01'
extern: '1'
intvolume: ' 58'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://meetings.aps.org/Meeting/MAR13/Event/186873
month: '03'
oa: 1
oa_version: Published Version
publication: APS March Meeting 2013
publication_identifier:
issn:
- 0003-0503
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Cantilever micro-susceptometry of mesoscopic Bi2212 samples
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 58
year: '2013'
...
---
_id: '10895'
abstract:
- lang: eng
text: 'Due to their sessile lifestyles, plants need to deal with the limitations
and stresses imposed by the changing environment. Plants cope with these by a
remarkable developmental flexibility, which is embedded in their strategy to survive.
Plants can adjust their size, shape and number of organs, bend according to gravity
and light, and regenerate tissues that were damaged, utilizing a coordinating,
intercellular signal, the plant hormone, auxin. Another versatile signal is the
cation, Ca2+, which is a crucial second messenger for many rapid cellular processes
during responses to a wide range of endogenous and environmental signals, such
as hormones, light, drought stress and others. Auxin is a good candidate for one
of these Ca2+-activating signals. However, the role of auxin-induced Ca2+ signaling
is poorly understood. Here, we will provide an overview of possible developmental
and physiological roles, as well as mechanisms underlying the interconnection
of Ca2+ and auxin signaling. '
article_processing_charge: No
article_type: original
author:
- first_name: Steffen
full_name: Vanneste, Steffen
last_name: Vanneste
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: 'Vanneste S, Friml J. Calcium: The missing link in auxin action. Plants.
2013;2(4):650-675. doi:10.3390/plants2040650'
apa: 'Vanneste, S., & Friml, J. (2013). Calcium: The missing link in auxin action.
Plants. MDPI. https://doi.org/10.3390/plants2040650'
chicago: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin
Action.” Plants. MDPI, 2013. https://doi.org/10.3390/plants2040650.'
ieee: 'S. Vanneste and J. Friml, “Calcium: The missing link in auxin action,” Plants,
vol. 2, no. 4. MDPI, pp. 650–675, 2013.'
ista: 'Vanneste S, Friml J. 2013. Calcium: The missing link in auxin action. Plants.
2(4), 650–675.'
mla: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.”
Plants, vol. 2, no. 4, MDPI, 2013, pp. 650–75, doi:10.3390/plants2040650.'
short: S. Vanneste, J. Friml, Plants 2 (2013) 650–675.
date_created: 2022-03-21T07:13:49Z
date_published: 2013-10-21T00:00:00Z
date_updated: 2022-03-21T12:15:29Z
day: '21'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.3390/plants2040650
external_id:
pmid:
- '27137397'
file:
- access_level: open_access
checksum: fb4ff2e820e344e253c9197544610be6
content_type: application/pdf
creator: dernst
date_created: 2022-03-21T12:12:56Z
date_updated: 2022-03-21T12:12:56Z
file_id: '10916'
file_name: 2013_Plants_Vanneste.pdf
file_size: 670188
relation: main_file
success: 1
file_date_updated: 2022-03-21T12:12:56Z
has_accepted_license: '1'
intvolume: ' 2'
issue: '4'
keyword:
- Plant Science
- Ecology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '10'
oa: 1
oa_version: Published Version
page: 650-675
pmid: 1
publication: Plants
publication_identifier:
issn:
- 2223-7747
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Calcium: The missing link in auxin action'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2013'
...
---
_id: '10897'
abstract:
- lang: eng
text: Taking images is an efficient way to collect data about the physical world.
It can be done fast and in exquisite detail. By definition, image processing is
the field that concerns itself with the computation aimed at harnessing the information
contained in images [10]. This talk is concerned with topological information.
Our main thesis is that persistent homology [5] is a useful method to quantify
and summarize topological information, building a bridge that connects algebraic
topology with applications. We provide supporting evidence for this thesis by
touching upon four technical developments in the overlap between persistent homology
and image processing.
acknowledgement: This research is partially supported by the European Science Foundation
(ESF) under the Research Network Programme, the European Union under the Toposys
Project FP7-ICT-318493-STREP, the Russian Government under the Mega Project 11.G34.31.0053.
article_processing_charge: No
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Edelsbrunner H. Persistent homology in image processing. In: Graph-Based
Representations in Pattern Recognition. Vol 7877. LNCS. Berlin, Heidelberg:
Springer Nature; 2013:182-183. doi:10.1007/978-3-642-38221-5_19'
apa: 'Edelsbrunner, H. (2013). Persistent homology in image processing. In Graph-Based
Representations in Pattern Recognition (Vol. 7877, pp. 182–183). Berlin, Heidelberg:
Springer Nature. https://doi.org/10.1007/978-3-642-38221-5_19'
chicago: 'Edelsbrunner, Herbert. “Persistent Homology in Image Processing.” In Graph-Based
Representations in Pattern Recognition, 7877:182–83. LNCS. Berlin, Heidelberg:
Springer Nature, 2013. https://doi.org/10.1007/978-3-642-38221-5_19.'
ieee: H. Edelsbrunner, “Persistent homology in image processing,” in Graph-Based
Representations in Pattern Recognition, Vienna, Austria, 2013, vol. 7877,
pp. 182–183.
ista: 'Edelsbrunner H. 2013. Persistent homology in image processing. Graph-Based
Representations in Pattern Recognition. GbRPR: Graph-based Representations in
Pattern RecognitionLNCS vol. 7877, 182–183.'
mla: Edelsbrunner, Herbert. “Persistent Homology in Image Processing.” Graph-Based
Representations in Pattern Recognition, vol. 7877, Springer Nature, 2013,
pp. 182–83, doi:10.1007/978-3-642-38221-5_19.
short: H. Edelsbrunner, in:, Graph-Based Representations in Pattern Recognition,
Springer Nature, Berlin, Heidelberg, 2013, pp. 182–183.
conference:
end_date: 2013-05-17
location: Vienna, Austria
name: 'GbRPR: Graph-based Representations in Pattern Recognition'
start_date: 2013-05-15
date_created: 2022-03-21T07:30:33Z
date_published: 2013-06-01T00:00:00Z
date_updated: 2023-09-05T15:10:20Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-642-38221-5_19
ec_funded: 1
intvolume: ' 7877'
language:
- iso: eng
month: '06'
oa_version: None
page: 182-183
place: Berlin, Heidelberg
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: Graph-Based Representations in Pattern Recognition
publication_identifier:
eisbn:
- '9783642382215'
eissn:
- 1611-3349
isbn:
- '9783642382208'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Persistent homology in image processing
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7877
year: '2013'
...
---
_id: '10898'
abstract:
- lang: eng
text: A prominent remedy to multicore scalability issues in concurrent data structure
implementations is to relax the sequential specification of the data structure.
We present distributed queues (DQ), a new family of relaxed concurrent queue implementations.
DQs implement relaxed queues with linearizable emptiness check and either configurable
or bounded out-of-order behavior or pool behavior. Our experiments show that DQs
outperform and outscale in micro- and macrobenchmarks all strict and relaxed queue
as well as pool implementations that we considered.
article_number: '17'
article_processing_charge: No
author:
- first_name: Andreas
full_name: Haas, Andreas
last_name: Haas
- first_name: Michael
full_name: Lippautz, Michael
last_name: Lippautz
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
- first_name: Hannes
full_name: Payer, Hannes
last_name: Payer
- first_name: Ana
full_name: Sokolova, Ana
last_name: Sokolova
- first_name: Christoph M.
full_name: Kirsch, Christoph M.
last_name: Kirsch
- first_name: Ali
full_name: Sezgin, Ali
id: 4C7638DA-F248-11E8-B48F-1D18A9856A87
last_name: Sezgin
citation:
ama: 'Haas A, Lippautz M, Henzinger TA, et al. Distributed queues in shared memory:
Multicore performance and scalability through quantitative relaxation. In: Proceedings
of the ACM International Conference on Computing Frontiers - CF ’13. ACM Press;
2013. doi:10.1145/2482767.2482789'
apa: 'Haas, A., Lippautz, M., Henzinger, T. A., Payer, H., Sokolova, A., Kirsch,
C. M., & Sezgin, A. (2013). Distributed queues in shared memory: Multicore
performance and scalability through quantitative relaxation. In Proceedings
of the ACM International Conference on Computing Frontiers - CF ’13. Ischia,
Italy: ACM Press. https://doi.org/10.1145/2482767.2482789'
chicago: 'Haas, Andreas, Michael Lippautz, Thomas A Henzinger, Hannes Payer, Ana
Sokolova, Christoph M. Kirsch, and Ali Sezgin. “Distributed Queues in Shared Memory:
Multicore Performance and Scalability through Quantitative Relaxation.” In Proceedings
of the ACM International Conference on Computing Frontiers - CF ’13. ACM Press,
2013. https://doi.org/10.1145/2482767.2482789.'
ieee: 'A. Haas et al., “Distributed queues in shared memory: Multicore performance
and scalability through quantitative relaxation,” in Proceedings of the ACM
International Conference on Computing Frontiers - CF ’13, Ischia, Italy, 2013,
no. 5.'
ista: 'Haas A, Lippautz M, Henzinger TA, Payer H, Sokolova A, Kirsch CM, Sezgin
A. 2013. Distributed queues in shared memory: Multicore performance and scalability
through quantitative relaxation. Proceedings of the ACM International Conference
on Computing Frontiers - CF ’13. CF: Conference on Computing Frontiers, 17.'
mla: 'Haas, Andreas, et al. “Distributed Queues in Shared Memory: Multicore Performance
and Scalability through Quantitative Relaxation.” Proceedings of the ACM International
Conference on Computing Frontiers - CF ’13, no. 5, 17, ACM Press, 2013, doi:10.1145/2482767.2482789.'
short: A. Haas, M. Lippautz, T.A. Henzinger, H. Payer, A. Sokolova, C.M. Kirsch,
A. Sezgin, in:, Proceedings of the ACM International Conference on Computing Frontiers
- CF ’13, ACM Press, 2013.
conference:
end_date: 2013-05-16
location: Ischia, Italy
name: 'CF: Conference on Computing Frontiers'
start_date: 2013-05-14
date_created: 2022-03-21T07:33:22Z
date_published: 2013-05-01T00:00:00Z
date_updated: 2022-06-21T08:01:19Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2482767.2482789
issue: '5'
language:
- iso: eng
month: '05'
oa_version: None
publication: Proceedings of the ACM International Conference on Computing Frontiers
- CF '13
publication_identifier:
isbn:
- 978-145032053-5
publication_status: published
publisher: ACM Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Distributed queues in shared memory: Multicore performance and scalability
through quantitative relaxation'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '10899'
article_processing_charge: No
author:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: 'Barton NH. Differentiation. In: Encyclopedia of Biodiversity. 2nd ed.
Elsevier; 2013:508-515. doi:10.1016/b978-0-12-384719-5.00031-9'
apa: Barton, N. H. (2013). Differentiation. In Encyclopedia of Biodiversity
(2nd ed., pp. 508–515). Elsevier. https://doi.org/10.1016/b978-0-12-384719-5.00031-9
chicago: Barton, Nicholas H. “Differentiation.” In Encyclopedia of Biodiversity,
2nd ed., 508–15. Elsevier, 2013. https://doi.org/10.1016/b978-0-12-384719-5.00031-9.
ieee: N. H. Barton, “Differentiation,” in Encyclopedia of Biodiversity, 2nd
ed., Elsevier, 2013, pp. 508–515.
ista: 'Barton NH. 2013.Differentiation. In: Encyclopedia of Biodiversity. , 508–515.'
mla: Barton, Nicholas H. “Differentiation.” Encyclopedia of Biodiversity,
2nd ed., Elsevier, 2013, pp. 508–15, doi:10.1016/b978-0-12-384719-5.00031-9.
short: N.H. Barton, in:, Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013,
pp. 508–515.
date_created: 2022-03-21T07:46:22Z
date_published: 2013-01-01T00:00:00Z
date_updated: 2022-06-20T09:18:06Z
day: '01'
department:
- _id: NiBa
doi: 10.1016/b978-0-12-384719-5.00031-9
edition: '2'
keyword:
- Adaptive landscape
- Cline
- Coalescent process
- Gene flow
- Hybrid zone
- Local adaptation
- Natural selection
- Neutral theory
- Population structure
- Speciation
language:
- iso: eng
month: '01'
oa_version: None
page: 508-515
publication: Encyclopedia of Biodiversity
publication_identifier:
isbn:
- 978-0-12-384720-1
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differentiation
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2013'
...
---
_id: '10900'
abstract:
- lang: eng
text: Leukocyte migration through the interstitial space is crucial for the maintenance
of tolerance and immunity. The main cues for leukocyte trafficking are chemokines
thought to directionally guide these cells towards their targets. However, model
systems that facilitate quantification of chemokine-guided leukocyte migration
in vivo are uncommon. Here we describe an ex vivo crawl-in assay using explanted
mouse ears that allows the visualization of chemokine-dependent dendritic cell
(DC) motility in the dermal interstitium in real time. We present methods for
the preparation of mouse ear sheets and their use in multidimensional confocal
imaging experiments to monitor and analyze the directional migration of fluorescently
labelled DCs through the dermis and into afferent lymphatic vessels. The assay
provides a more physiological approach to study leukocyte migration than in vitro
three-dimensional (3D) or 2-dimensional (2D) migration assays such as collagen
gels and transwell assays.
acknowledgement: We would like to thank Alexander Eichner and Ingrid de Vries for
discussion and critical reading of the manuscript, and Mary Frank for assistance
with the recording of videos and images in Fig. 1. M.S. is supported through funding
from the German Research Foundation (DFG). M.W. acknowledges the Alexander von Humboldt
Foundation for funding.
alternative_title:
- Methods in Molecular Biology
article_processing_charge: No
author:
- first_name: Michele
full_name: Weber, Michele
id: 3A3FC708-F248-11E8-B48F-1D18A9856A87
last_name: Weber
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: 'Weber M, Sixt MK. Live Cell Imaging of Chemotactic Dendritic Cell Migration
in Explanted Mouse Ear Preparations. In: Cardona A, Ubogu E, eds. Chemokines.
Vol 1013. MIMB. Totowa, NJ: Humana Press; 2013:215-226. doi:10.1007/978-1-62703-426-5_14'
apa: 'Weber, M., & Sixt, M. K. (2013). Live Cell Imaging of Chemotactic Dendritic
Cell Migration in Explanted Mouse Ear Preparations. In A. Cardona & E. Ubogu
(Eds.), Chemokines (Vol. 1013, pp. 215–226). Totowa, NJ: Humana Press.
https://doi.org/10.1007/978-1-62703-426-5_14'
chicago: 'Weber, Michele, and Michael K Sixt. “Live Cell Imaging of Chemotactic
Dendritic Cell Migration in Explanted Mouse Ear Preparations.” In Chemokines,
edited by Astrid Cardona and Eroboghene Ubogu, 1013:215–26. MIMB. Totowa, NJ:
Humana Press, 2013. https://doi.org/10.1007/978-1-62703-426-5_14.'
ieee: 'M. Weber and M. K. Sixt, “Live Cell Imaging of Chemotactic Dendritic Cell
Migration in Explanted Mouse Ear Preparations,” in Chemokines, vol. 1013,
A. Cardona and E. Ubogu, Eds. Totowa, NJ: Humana Press, 2013, pp. 215–226.'
ista: 'Weber M, Sixt MK. 2013.Live Cell Imaging of Chemotactic Dendritic Cell Migration
in Explanted Mouse Ear Preparations. In: Chemokines. Methods in Molecular Biology,
vol. 1013, 215–226.'
mla: Weber, Michele, and Michael K. Sixt. “Live Cell Imaging of Chemotactic Dendritic
Cell Migration in Explanted Mouse Ear Preparations.” Chemokines, edited
by Astrid Cardona and Eroboghene Ubogu, vol. 1013, Humana Press, 2013, pp. 215–26,
doi:10.1007/978-1-62703-426-5_14.
short: M. Weber, M.K. Sixt, in:, A. Cardona, E. Ubogu (Eds.), Chemokines, Humana
Press, Totowa, NJ, 2013, pp. 215–226.
date_created: 2022-03-21T07:47:41Z
date_published: 2013-04-03T00:00:00Z
date_updated: 2023-09-05T13:15:33Z
day: '03'
department:
- _id: MiSi
doi: 10.1007/978-1-62703-426-5_14
editor:
- first_name: Astrid
full_name: Cardona, Astrid
last_name: Cardona
- first_name: Eroboghene
full_name: Ubogu, Eroboghene
last_name: Ubogu
external_id:
pmid:
- '23625502'
intvolume: ' 1013'
language:
- iso: eng
month: '04'
oa_version: None
page: 215-226
place: Totowa, NJ
pmid: 1
publication: Chemokines
publication_identifier:
eisbn:
- '9781627034265'
eissn:
- 1940-6029
isbn:
- '9781627034258'
issn:
- 1064-3745
publication_status: published
publisher: Humana Press
quality_controlled: '1'
scopus_import: '1'
series_title: MIMB
status: public
title: Live Cell Imaging of Chemotactic Dendritic Cell Migration in Explanted Mouse
Ear Preparations
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 1013
year: '2013'
...
---
_id: '10902'
abstract:
- lang: eng
text: We consider how to edit strings from a source language so that the edited
strings belong to a target language, where the languages are given as deterministic
finite automata. Non-streaming (or offline) transducers perform edits given the
whole source string. We show that the class of deterministic one-pass transducers
with registers along with increment and min operation suffices for computing optimal
edit distance, whereas the same class of transducers without the min operation
is not sufficient. Streaming (or online) transducers perform edits as the letters
of the source string are received. We present a polynomial time algorithm for
the partial-repair problem that given a bound α asks for the construction of a
deterministic streaming transducer (if one exists) that ensures that the ‘maximum
fraction’ η of the strings of the source language are edited, within cost α, to
the target language.
acknowledgement: 'The research was supported by Austrian Science Fund (FWF) Grant
No P 23499-N23, FWF NFN Grant No S11407-N23 (RiSE), ERC Start grant (279307: Graph
Games), and Microsoft faculty fellows award. Thanks to Gabriele Puppis for suggesting
the problem of identifying a deterministic transducer to compute the optimal cost,
and to Martin Chmelik for his comments on the introduction.'
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Siddhesh
full_name: Chaubal, Siddhesh
last_name: Chaubal
- first_name: Sasha
full_name: Rubin, Sasha
id: 2EC51194-F248-11E8-B48F-1D18A9856A87
last_name: Rubin
citation:
ama: 'Chatterjee K, Chaubal S, Rubin S. How to travel between languages. In: 7th
International Conference on Language and Automata Theory and Applications.
Vol 7810. LNCS. Berlin, Heidelberg: Springer Nature; 2013:214-225. doi:10.1007/978-3-642-37064-9_20'
apa: 'Chatterjee, K., Chaubal, S., & Rubin, S. (2013). How to travel between
languages. In 7th International Conference on Language and Automata Theory
and Applications (Vol. 7810, pp. 214–225). Berlin, Heidelberg: Springer Nature.
https://doi.org/10.1007/978-3-642-37064-9_20'
chicago: 'Chatterjee, Krishnendu, Siddhesh Chaubal, and Sasha Rubin. “How to Travel
between Languages.” In 7th International Conference on Language and Automata
Theory and Applications, 7810:214–25. LNCS. Berlin, Heidelberg: Springer Nature,
2013. https://doi.org/10.1007/978-3-642-37064-9_20.'
ieee: K. Chatterjee, S. Chaubal, and S. Rubin, “How to travel between languages,”
in 7th International Conference on Language and Automata Theory and Applications,
Bilbao, Spain, 2013, vol. 7810, pp. 214–225.
ista: 'Chatterjee K, Chaubal S, Rubin S. 2013. How to travel between languages.
7th International Conference on Language and Automata Theory and Applications.
LATA: Conference on Language and Automata Theory and ApplicationsLNCS, LNCS, vol.
7810, 214–225.'
mla: Chatterjee, Krishnendu, et al. “How to Travel between Languages.” 7th International
Conference on Language and Automata Theory and Applications, vol. 7810, Springer
Nature, 2013, pp. 214–25, doi:10.1007/978-3-642-37064-9_20.
short: K. Chatterjee, S. Chaubal, S. Rubin, in:, 7th International Conference on
Language and Automata Theory and Applications, Springer Nature, Berlin, Heidelberg,
2013, pp. 214–225.
conference:
end_date: 2013-04-05
location: Bilbao, Spain
name: 'LATA: Conference on Language and Automata Theory and Applications'
start_date: 2013-04-02
date_created: 2022-03-21T07:56:21Z
date_published: 2013-04-15T00:00:00Z
date_updated: 2023-09-05T15:10:38Z
day: '15'
department:
- _id: KrCh
doi: 10.1007/978-3-642-37064-9_20
ec_funded: 1
intvolume: ' 7810'
language:
- iso: eng
month: '04'
oa_version: None
page: 214-225
place: Berlin, Heidelberg
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication: 7th International Conference on Language and Automata Theory and Applications
publication_identifier:
eisbn:
- '9783642370649'
eissn:
- 1611-3349
isbn:
- '9783642370632'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: How to travel between languages
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7810
year: '2013'
...
---
_id: '11083'
abstract:
- lang: eng
text: Nuclear pore complex (NPC) proteins are known for their critical roles in
regulating nucleocytoplasmic traffic of macromolecules across the nuclear envelope.
However, recent findings suggest that some nucleoporins (Nups), including Nup98,
have additional functions in developmental gene regulation. Nup98, which exhibits
transcription-dependent mobility at the NPC but can also bind chromatin away from
the nuclear envelope, is frequently involved in chromosomal translocations in
a subset of patients suffering from acute myeloid leukemia (AML). A common paradigm
suggests that Nup98 translocations cause aberrant transcription when they are
recuited to aberrant genomic loci. Importantly, this model fails to account for
the potential loss of wild type (WT) Nup98 function in the presence of Nup98 translocation
mutants. Here we examine how the cell might regulate Nup98 nucleoplasmic protein
levels to control transcription in healthy cells. In addition, we discuss the
possibility that dominant negative Nup98 fusion proteins disrupt the transcriptional
activity of WT Nup98 in the nucleoplasm to drive AML.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Tobias M.
full_name: Franks, Tobias M.
last_name: Franks
- first_name: Martin W
full_name: HETZER, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: HETZER
orcid: 0000-0002-2111-992X
citation:
ama: Franks TM, Hetzer M. The role of Nup98 in transcription regulation in healthy
and diseased cells. Trends in Cell Biology. 2013;23(3):112-117. doi:10.1016/j.tcb.2012.10.013
apa: Franks, T. M., & Hetzer, M. (2013). The role of Nup98 in transcription
regulation in healthy and diseased cells. Trends in Cell Biology. Elsevier.
https://doi.org/10.1016/j.tcb.2012.10.013
chicago: Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription
Regulation in Healthy and Diseased Cells.” Trends in Cell Biology. Elsevier,
2013. https://doi.org/10.1016/j.tcb.2012.10.013.
ieee: T. M. Franks and M. Hetzer, “The role of Nup98 in transcription regulation
in healthy and diseased cells,” Trends in Cell Biology, vol. 23, no. 3.
Elsevier, pp. 112–117, 2013.
ista: Franks TM, Hetzer M. 2013. The role of Nup98 in transcription regulation in
healthy and diseased cells. Trends in Cell Biology. 23(3), 112–117.
mla: Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription Regulation
in Healthy and Diseased Cells.” Trends in Cell Biology, vol. 23, no. 3,
Elsevier, 2013, pp. 112–17, doi:10.1016/j.tcb.2012.10.013.
short: T.M. Franks, M. Hetzer, Trends in Cell Biology 23 (2013) 112–117.
date_created: 2022-04-07T07:50:33Z
date_published: 2013-03-01T00:00:00Z
date_updated: 2022-07-18T08:45:34Z
day: '01'
doi: 10.1016/j.tcb.2012.10.013
extern: '1'
external_id:
pmid:
- '23246429'
intvolume: ' 23'
issue: '3'
keyword:
- Cell Biology
language:
- iso: eng
month: '03'
oa_version: None
page: 112-117
pmid: 1
publication: Trends in Cell Biology
publication_identifier:
issn:
- 0962-8924
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of Nup98 in transcription regulation in healthy and diseased cells
type: journal_article
user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd
volume: 23
year: '2013'
...