---
_id: '2251'
abstract:
- lang: eng
text: 'Sharp wave/ripple (SWR, 150–250 Hz) hippocampal events have long been postulated
to be involved in memory consolidation. However, more recent work has investigated
SWRs that occur during active waking behaviour: findings that suggest that SWRs
may also play a role in cell assembly strengthening or spatial working memory.
Do such theories of SWR function apply to animal learning? This review discusses
how general theories linking SWRs to memory-related function may explain circuit
mechanisms related to rodent spatial learning and to the associated stabilization
of new cognitive maps.'
acknowledgement: CC BY 3.0
article_number: '20120528'
article_processing_charge: No
author:
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
- first_name: David
full_name: Dupret, David
last_name: Dupret
citation:
ama: Csicsvari JL, Dupret D. Sharp wave/ripple network oscillations and learning-associated
hippocampal maps. Philosophical Transactions of the Royal Society of London
Series B, Biological Sciences. 2014;369(1635). doi:10.1098/rstb.2012.0528
apa: Csicsvari, J. L., & Dupret, D. (2014). Sharp wave/ripple network oscillations
and learning-associated hippocampal maps. Philosophical Transactions of the
Royal Society of London. Series B, Biological Sciences. Royal Society, The.
https://doi.org/10.1098/rstb.2012.0528
chicago: Csicsvari, Jozsef L, and David Dupret. “Sharp Wave/Ripple Network Oscillations
and Learning-Associated Hippocampal Maps.” Philosophical Transactions of the
Royal Society of London. Series B, Biological Sciences. Royal Society, The,
2014. https://doi.org/10.1098/rstb.2012.0528.
ieee: J. L. Csicsvari and D. Dupret, “Sharp wave/ripple network oscillations and
learning-associated hippocampal maps,” Philosophical Transactions of the Royal
Society of London. Series B, Biological Sciences, vol. 369, no. 1635. Royal
Society, The, 2014.
ista: Csicsvari JL, Dupret D. 2014. Sharp wave/ripple network oscillations and learning-associated
hippocampal maps. Philosophical Transactions of the Royal Society of London. Series
B, Biological Sciences. 369(1635), 20120528.
mla: Csicsvari, Jozsef L., and David Dupret. “Sharp Wave/Ripple Network Oscillations
and Learning-Associated Hippocampal Maps.” Philosophical Transactions of the
Royal Society of London. Series B, Biological Sciences, vol. 369, no. 1635,
20120528, Royal Society, The, 2014, doi:10.1098/rstb.2012.0528.
short: J.L. Csicsvari, D. Dupret, Philosophical Transactions of the Royal Society
of London. Series B, Biological Sciences 369 (2014).
date_created: 2018-12-11T11:56:34Z
date_published: 2014-02-05T00:00:00Z
date_updated: 2021-01-12T06:56:18Z
day: '05'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.1098/rstb.2012.0528
external_id:
pmid:
- '24366138'
file:
- access_level: open_access
checksum: 51beb33de71c9c19e0c205a20d206f9a
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:24Z
date_updated: 2020-07-14T12:45:34Z
file_id: '5006'
file_name: IST-2016-527-v1+1_20120528.full.pdf
file_size: 771896
relation: main_file
file_date_updated: 2020-07-14T12:45:34Z
has_accepted_license: '1'
intvolume: ' 369'
issue: '1635'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Philosophical Transactions of the Royal Society of London. Series B,
Biological Sciences
publication_identifier:
issn:
- '09628436'
publication_status: published
publisher: Royal Society, The
publist_id: '4697'
pubrep_id: '527'
quality_controlled: '1'
scopus_import: 1
status: public
title: Sharp wave/ripple network oscillations and learning-associated hippocampal
maps
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 369
year: '2014'
...
---
_id: '2252'
abstract:
- lang: eng
text: The pattern of inheritance and mechanism of sex determination can have important
evolutionary consequences. We studied probabilistic sex determination in the ciliate
Tetrahymena thermophila, which was previously shown to cause evolution of skewed
sex ratios. We find that the genetic background alters the sex determination patterns
of mat alleles in heterozygotes and that allelic interaction can differentially
influence the expression probability of the 7 sexes. We quantify the dominance
relationships between several mat alleles and find that A-type alleles, which
specify sex I, are indeed recessive to B-type alleles, which are unable to specify
that sex. Our results provide additional support for the presence of modifier
loci and raise implications for the dynamics of sex ratios in populations of T.
thermophila.
article_processing_charge: No
author:
- first_name: Sujal
full_name: Phadke, Sujal
last_name: Phadke
- first_name: Tiago
full_name: Paixao, Tiago
id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
last_name: Paixao
orcid: 0000-0003-2361-3953
- first_name: Tuan
full_name: Pham, Tuan
last_name: Pham
- first_name: Stephanie
full_name: Pham, Stephanie
last_name: Pham
- first_name: Rebecca
full_name: Zufall, Rebecca
last_name: Zufall
citation:
ama: Phadke S, Paixao T, Pham T, Pham S, Zufall R. Genetic background alters dominance
relationships between mat alleles in the ciliate Tetrahymena Thermophila. Journal
of Heredity. 2014;105(1):130-135. doi:10.1093/jhered/est063
apa: Phadke, S., Paixao, T., Pham, T., Pham, S., & Zufall, R. (2014). Genetic
background alters dominance relationships between mat alleles in the ciliate Tetrahymena
Thermophila. Journal of Heredity. Oxford University Press. https://doi.org/10.1093/jhered/est063
chicago: Phadke, Sujal, Tiago Paixao, Tuan Pham, Stephanie Pham, and Rebecca Zufall.
“Genetic Background Alters Dominance Relationships between Mat Alleles in the
Ciliate Tetrahymena Thermophila.” Journal of Heredity. Oxford University
Press, 2014. https://doi.org/10.1093/jhered/est063.
ieee: S. Phadke, T. Paixao, T. Pham, S. Pham, and R. Zufall, “Genetic background
alters dominance relationships between mat alleles in the ciliate Tetrahymena
Thermophila,” Journal of Heredity, vol. 105, no. 1. Oxford University Press,
pp. 130–135, 2014.
ista: Phadke S, Paixao T, Pham T, Pham S, Zufall R. 2014. Genetic background alters
dominance relationships between mat alleles in the ciliate Tetrahymena Thermophila.
Journal of Heredity. 105(1), 130–135.
mla: Phadke, Sujal, et al. “Genetic Background Alters Dominance Relationships between
Mat Alleles in the Ciliate Tetrahymena Thermophila.” Journal of Heredity,
vol. 105, no. 1, Oxford University Press, 2014, pp. 130–35, doi:10.1093/jhered/est063.
short: S. Phadke, T. Paixao, T. Pham, S. Pham, R. Zufall, Journal of Heredity 105
(2014) 130–135.
date_created: 2018-12-11T11:56:35Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2022-08-25T14:45:42Z
day: '01'
department:
- _id: NiBa
doi: 10.1093/jhered/est063
intvolume: ' 105'
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 130 - 135
publication: Journal of Heredity
publication_identifier:
issn:
- '00221503'
publication_status: published
publisher: Oxford University Press
publist_id: '4695'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genetic background alters dominance relationships between mat alleles in the
ciliate Tetrahymena Thermophila
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 105
year: '2014'
...
---
_id: '2253'
abstract:
- lang: eng
text: Plant growth is achieved predominantly by cellular elongation, which is thought
to be controlled on several levels by apoplastic auxin. Auxin export into the
apoplast is achieved by plasma membrane efflux catalysts of the PIN-FORMED (PIN)
and ATP-binding cassette protein subfamily B/phosphor- glycoprotein (ABCB/PGP)
classes; the latter were shown to depend on interaction with the FKBP42, TWISTED
DWARF1 (TWD1). Here by using a transgenic approach in combination with phenotypical,
biochemical and cell biological analyses we demonstrate the importance of a putative
C-terminal in-plane membrane anchor of TWD1 in the regulation of ABCB-mediated
auxin transport. In contrast with dwarfed twd1 loss-of-function alleles, TWD1
gain-of-function lines that lack a putative in-plane membrane anchor (HA-TWD1-Ct)
show hypermorphic plant architecture, characterized by enhanced stem length and
leaf surface but reduced shoot branching. Greater hypocotyl length is the result
of enhanced cell elongation that correlates with reduced polar auxin transport
capacity for HA-TWD1-Ct. As a consequence, HA-TWD1-Ct displays higher hypocotyl
auxin accumulation, which is shown to result in elevated auxin-induced cell elongation
rates. Our data highlight the importance of C-terminal membrane anchoring for
TWD1 action, which is required for specific regulation of ABCB-mediated auxin
transport. These data support a model in which TWD1 controls lateral ABCB1-mediated
export into the apoplast, which is required for auxin-mediated cell elongation.
article_processing_charge: No
article_type: original
author:
- first_name: Aurélien
full_name: Bailly, Aurélien
last_name: Bailly
- first_name: Bangjun
full_name: Wang, Bangjun
last_name: Wang
- first_name: Marta
full_name: Zwiewka, Marta
last_name: Zwiewka
- first_name: Stephan
full_name: Pollmann, Stephan
last_name: Pollmann
- first_name: Daniel
full_name: Schenck, Daniel
last_name: Schenck
- first_name: Hartwig
full_name: Lüthen, Hartwig
last_name: Lüthen
- first_name: Alexander
full_name: Schulz, Alexander
last_name: Schulz
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Markus
full_name: Geisler, Markus
last_name: Geisler
citation:
ama: Bailly A, Wang B, Zwiewka M, et al. Expression of TWISTED DWARF1 lacking its
in-plane membrane anchor leads to increased cell elongation and hypermorphic growth.
Plant Journal. 2014;77(1):108-118. doi:10.1111/tpj.12369
apa: Bailly, A., Wang, B., Zwiewka, M., Pollmann, S., Schenck, D., Lüthen, H., …
Geisler, M. (2014). Expression of TWISTED DWARF1 lacking its in-plane membrane
anchor leads to increased cell elongation and hypermorphic growth. Plant Journal.
Wiley-Blackwell. https://doi.org/10.1111/tpj.12369
chicago: Bailly, Aurélien, Bangjun Wang, Marta Zwiewka, Stephan Pollmann, Daniel
Schenck, Hartwig Lüthen, Alexander Schulz, Jiří Friml, and Markus Geisler. “Expression
of TWISTED DWARF1 Lacking Its In-Plane Membrane Anchor Leads to Increased Cell
Elongation and Hypermorphic Growth.” Plant Journal. Wiley-Blackwell, 2014.
https://doi.org/10.1111/tpj.12369.
ieee: A. Bailly et al., “Expression of TWISTED DWARF1 lacking its in-plane
membrane anchor leads to increased cell elongation and hypermorphic growth,” Plant
Journal, vol. 77, no. 1. Wiley-Blackwell, pp. 108–118, 2014.
ista: Bailly A, Wang B, Zwiewka M, Pollmann S, Schenck D, Lüthen H, Schulz A, Friml
J, Geisler M. 2014. Expression of TWISTED DWARF1 lacking its in-plane membrane
anchor leads to increased cell elongation and hypermorphic growth. Plant Journal.
77(1), 108–118.
mla: Bailly, Aurélien, et al. “Expression of TWISTED DWARF1 Lacking Its In-Plane
Membrane Anchor Leads to Increased Cell Elongation and Hypermorphic Growth.” Plant
Journal, vol. 77, no. 1, Wiley-Blackwell, 2014, pp. 108–18, doi:10.1111/tpj.12369.
short: A. Bailly, B. Wang, M. Zwiewka, S. Pollmann, D. Schenck, H. Lüthen, A. Schulz,
J. Friml, M. Geisler, Plant Journal 77 (2014) 108–118.
date_created: 2018-12-11T11:56:35Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:18Z
day: '01'
department:
- _id: JiFr
doi: 10.1111/tpj.12369
intvolume: ' 77'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1111/tpj.12369
month: '01'
oa: 1
oa_version: Published Version
page: 108 - 118
project:
- _id: 256BDAB0-B435-11E9-9278-68D0E5697425
name: Innovationsförderung in der Grenzregion Österreich – Tschechische Republik
durch die Schaffung von Synergien im Bereich der Forschungsinfrastruktur
publication: Plant Journal
publication_identifier:
issn:
- '09607412'
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4694'
quality_controlled: '1'
scopus_import: 1
status: public
title: Expression of TWISTED DWARF1 lacking its in-plane membrane anchor leads to
increased cell elongation and hypermorphic growth
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 77
year: '2014'
...
---
_id: '2254'
abstract:
- lang: eng
text: Theta-gamma network oscillations are thought to represent key reference signals
for information processing in neuronal ensembles, but the underlying synaptic
mechanisms remain unclear. To address this question, we performed whole-cell (WC)
patch-clamp recordings from mature hippocampal granule cells (GCs) in vivo in
the dentate gyrus of anesthetized and awake rats. GCs in vivo fired action potentials
at low frequency, consistent with sparse coding in the dentate gyrus. GCs were
exposed to barrages of fast AMPAR-mediated excitatory postsynaptic currents (EPSCs),
primarily relayed from the entorhinal cortex, and inhibitory postsynaptic currents
(IPSCs), presumably generated by local interneurons. EPSCs exhibited coherence
with the field potential predominantly in the theta frequency band, whereas IPSCs
showed coherence primarily in the gamma range. Action potentials in GCs were phase
locked to network oscillations. Thus, theta-gamma-modulated synaptic currents
may provide a framework for sparse temporal coding of information in the dentate
gyrus.
author:
- first_name: Alejandro
full_name: Pernia-Andrade, Alejandro
id: 36963E98-F248-11E8-B48F-1D18A9856A87
last_name: Pernia-Andrade
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Pernia-Andrade A, Jonas PM. Theta-gamma-modulated synaptic currents in hippocampal
granule cells in vivo define a mechanism for network oscillations. Neuron.
2014;81(1):140-152. doi:10.1016/j.neuron.2013.09.046
apa: Pernia-Andrade, A., & Jonas, P. M. (2014). Theta-gamma-modulated synaptic
currents in hippocampal granule cells in vivo define a mechanism for network oscillations.
Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2013.09.046
chicago: Pernia-Andrade, Alejandro, and Peter M Jonas. “Theta-Gamma-Modulated Synaptic
Currents in Hippocampal Granule Cells in Vivo Define a Mechanism for Network Oscillations.”
Neuron. Elsevier, 2014. https://doi.org/10.1016/j.neuron.2013.09.046.
ieee: A. Pernia-Andrade and P. M. Jonas, “Theta-gamma-modulated synaptic currents
in hippocampal granule cells in vivo define a mechanism for network oscillations,”
Neuron, vol. 81, no. 1. Elsevier, pp. 140–152, 2014.
ista: Pernia-Andrade A, Jonas PM. 2014. Theta-gamma-modulated synaptic currents
in hippocampal granule cells in vivo define a mechanism for network oscillations.
Neuron. 81(1), 140–152.
mla: Pernia-Andrade, Alejandro, and Peter M. Jonas. “Theta-Gamma-Modulated Synaptic
Currents in Hippocampal Granule Cells in Vivo Define a Mechanism for Network Oscillations.”
Neuron, vol. 81, no. 1, Elsevier, 2014, pp. 140–52, doi:10.1016/j.neuron.2013.09.046.
short: A. Pernia-Andrade, P.M. Jonas, Neuron 81 (2014) 140–152.
date_created: 2018-12-11T11:56:35Z
date_published: 2014-01-08T00:00:00Z
date_updated: 2021-01-12T06:56:19Z
day: '08'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1016/j.neuron.2013.09.046
ec_funded: 1
file:
- access_level: open_access
checksum: 438547cfcd9045a22f065f2019f07849
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:48Z
date_updated: 2020-07-14T12:45:35Z
file_id: '4773'
file_name: IST-2016-422-v1+1_1-s2.0-S0896627313009227-main.pdf
file_size: 4373072
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: ' 81'
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 140 - 152
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '268548'
name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P24909-B24
name: Mechanisms of transmitter release at GABAergic synapses
publication: Neuron
publication_identifier:
issn:
- '08966273'
publication_status: published
publisher: Elsevier
publist_id: '4692'
pubrep_id: '422'
quality_controlled: '1'
scopus_import: 1
status: public
title: Theta-gamma-modulated synaptic currents in hippocampal granule cells in vivo
define a mechanism for network oscillations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 81
year: '2014'
...
---
_id: '2255'
abstract:
- lang: eng
text: Motivated by applications in biology, we present an algorithm for estimating
the length of tube-like shapes in 3-dimensional Euclidean space. In a first step,
we combine the tube formula of Weyl with integral geometric methods to obtain
an integral representation of the length, which we approximate using a variant
of the Koksma-Hlawka Theorem. In a second step, we use tools from computational
topology to decrease the dependence on small perturbations of the shape. We present
computational experiments that shed light on the stability and the convergence
rate of our algorithm.
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Florian
full_name: Pausinger, Florian
id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
last_name: Pausinger
orcid: 0000-0002-8379-3768
citation:
ama: Edelsbrunner H, Pausinger F. Stable length estimates of tube-like shapes. Journal
of Mathematical Imaging and Vision. 2014;50(1):164-177. doi:10.1007/s10851-013-0468-x
apa: Edelsbrunner, H., & Pausinger, F. (2014). Stable length estimates of tube-like
shapes. Journal of Mathematical Imaging and Vision. Springer. https://doi.org/10.1007/s10851-013-0468-x
chicago: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates
of Tube-like Shapes.” Journal of Mathematical Imaging and Vision. Springer,
2014. https://doi.org/10.1007/s10851-013-0468-x.
ieee: H. Edelsbrunner and F. Pausinger, “Stable length estimates of tube-like shapes,”
Journal of Mathematical Imaging and Vision, vol. 50, no. 1. Springer, pp.
164–177, 2014.
ista: Edelsbrunner H, Pausinger F. 2014. Stable length estimates of tube-like shapes.
Journal of Mathematical Imaging and Vision. 50(1), 164–177.
mla: Edelsbrunner, Herbert, and Florian Pausinger. “Stable Length Estimates of Tube-like
Shapes.” Journal of Mathematical Imaging and Vision, vol. 50, no. 1, Springer,
2014, pp. 164–77, doi:10.1007/s10851-013-0468-x.
short: H. Edelsbrunner, F. Pausinger, Journal of Mathematical Imaging and Vision
50 (2014) 164–177.
date_created: 2018-12-11T11:56:36Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2023-09-07T11:41:25Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1007/s10851-013-0468-x
ec_funded: 1
file:
- access_level: open_access
checksum: 2f93f3e63a38a85cd4404d7953913b14
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:18Z
date_updated: 2020-07-14T12:45:35Z
file_id: '5204'
file_name: IST-2016-549-v1+1_2014-J-06-LengthEstimate.pdf
file_size: 3941391
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: ' 50'
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 164 - 177
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: Journal of Mathematical Imaging and Vision
publication_identifier:
issn:
- '09249907'
publication_status: published
publisher: Springer
publist_id: '4691'
pubrep_id: '549'
quality_controlled: '1'
related_material:
record:
- id: '2843'
relation: earlier_version
status: public
- id: '1399'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: Stable length estimates of tube-like shapes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2014'
...
---
_id: '2257'
abstract:
- lang: eng
text: 'Maximum entropy models are the least structured probability distributions
that exactly reproduce a chosen set of statistics measured in an interacting network.
Here we use this principle to construct probabilistic models which describe the
correlated spiking activity of populations of up to 120 neurons in the salamander
retina as it responds to natural movies. Already in groups as small as 10 neurons,
interactions between spikes can no longer be regarded as small perturbations in
an otherwise independent system; for 40 or more neurons pairwise interactions
need to be supplemented by a global interaction that controls the distribution
of synchrony in the population. Here we show that such “K-pairwise” models—being
systematic extensions of the previously used pairwise Ising models—provide an
excellent account of the data. We explore the properties of the neural vocabulary
by: 1) estimating its entropy, which constrains the population''s capacity to
represent visual information; 2) classifying activity patterns into a small set
of metastable collective modes; 3) showing that the neural codeword ensembles
are extremely inhomogenous; 4) demonstrating that the state of individual neurons
is highly predictable from the rest of the population, allowing the capacity for
error correction.'
acknowledgement: "\r\n\r\n\r\n\r\nThis work was funded by NSF grant IIS-0613435, NSF
grant PHY-0957573, NSF grant CCF-0939370, NIH grant R01 EY14196, NIH grant P50 GM071508,
the Fannie and John Hertz Foundation, the Swartz Foundation, the WM Keck Foundation,
ANR Optima and the French State program “Investissements d'Avenir” [LIFESENSES:
ANR-10-LABX-65], and the Austrian Research Foundation FWF P25651."
article_number: e1003408
author:
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: Olivier
full_name: Marre, Olivier
last_name: Marre
- first_name: Dario
full_name: Amodei, Dario
last_name: Amodei
- first_name: Elad
full_name: Schneidman, Elad
last_name: Schneidman
- first_name: William
full_name: Bialek, William
last_name: Bialek
- first_name: Michael
full_name: Berry, Michael
last_name: Berry
citation:
ama: Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. Searching for
collective behavior in a large network of sensory neurons. PLoS Computational
Biology. 2014;10(1). doi:10.1371/journal.pcbi.1003408
apa: Tkačik, G., Marre, O., Amodei, D., Schneidman, E., Bialek, W., & Berry,
M. (2014). Searching for collective behavior in a large network of sensory neurons.
PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1003408
chicago: Tkačik, Gašper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek,
and Michael Berry. “Searching for Collective Behavior in a Large Network of Sensory
Neurons.” PLoS Computational Biology. Public Library of Science, 2014.
https://doi.org/10.1371/journal.pcbi.1003408.
ieee: G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Searching
for collective behavior in a large network of sensory neurons,” PLoS Computational
Biology, vol. 10, no. 1. Public Library of Science, 2014.
ista: Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. 2014. Searching
for collective behavior in a large network of sensory neurons. PLoS Computational
Biology. 10(1), e1003408.
mla: Tkačik, Gašper, et al. “Searching for Collective Behavior in a Large Network
of Sensory Neurons.” PLoS Computational Biology, vol. 10, no. 1, e1003408,
Public Library of Science, 2014, doi:10.1371/journal.pcbi.1003408.
short: G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS
Computational Biology 10 (2014).
date_created: 2018-12-11T11:56:36Z
date_published: 2014-01-02T00:00:00Z
date_updated: 2024-02-21T13:46:14Z
day: '02'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1371/journal.pcbi.1003408
file:
- access_level: open_access
checksum: c720222c5e924a4acb17f23b9381a6ca
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:46Z
date_updated: 2020-07-14T12:45:35Z
file_id: '4965'
file_name: IST-2016-436-v1+1_journal.pcbi.1003408.pdf
file_size: 2194790
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: ' 10'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://repository.ist.ac.at/id/eprint/436
month: '01'
oa: 1
oa_version: Published Version
publication: PLoS Computational Biology
publication_identifier:
issn:
- 1553734X
publication_status: published
publisher: Public Library of Science
publist_id: '4689'
pubrep_id: '436'
quality_controlled: '1'
related_material:
record:
- id: '5562'
relation: popular_science
status: public
scopus_import: 1
status: public
title: Searching for collective behavior in a large network of sensory neurons
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2014'
...
---
_id: '2261'
abstract:
- lang: eng
text: To reveal the full potential of human pluripotent stem cells, new methods
for rapid, site-specific genomic engineering are needed. Here, we describe a system
for precise genetic modification of human embryonic stem cells (ESCs) and induced
pluripotent stem cells (iPSCs). We identified a novel human locus, H11, located
in a safe, intergenic, transcriptionally active region of chromosome 22, as the
recipient site, to provide robust, ubiquitous expression of inserted genes. Recipient
cell lines were established by site-specific placement of a ‘landing pad’ cassette
carrying attP sites for phiC31 and Bxb1 integrases at the H11 locus by spontaneous
or TALEN-assisted homologous recombination. Dual integrase cassette exchange (DICE)
mediated by phiC31 and Bxb1 integrases was used to insert genes of interest flanked
by phiC31 and Bxb1 attB sites at the H11 locus, replacing the landing pad. This
system provided complete control over content, direction and copy number of inserted
genes, with a specificity of 100%. A series of genes, including mCherry and various
combinations of the neural transcription factors LMX1a, FOXA2 and OTX2, were inserted
in recipient cell lines derived from H9 ESC, as well as iPSC lines derived from
a Parkinson’s disease patient and a normal sibling control. The DICE system offers
rapid, efficient and precise gene insertion in ESC and iPSC and is particularly
well suited for repeated modifications of the same locus.
acknowledgement: "California Institute for Regenerative Medicine [RT2-01880 and TR2-01756].
Funding for open access charge: California Institute for Regenerative Medicine [RT2-01880
and TR2-01756]\r\nCC BY 3,0"
article_number: e34
author:
- first_name: Fangfang
full_name: Zhu, Fangfang
last_name: Zhu
- first_name: Matthew
full_name: Gamboa, Matthew
last_name: Gamboa
- first_name: Alfonso
full_name: Farruggio, Alfonso
last_name: Farruggio
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Bosiljka
full_name: Tasic, Bosiljka
last_name: Tasic
- first_name: Birgitt
full_name: Schüle, Birgitt
last_name: Schüle
- first_name: Yanru
full_name: Chen Tsai, Yanru
last_name: Chen Tsai
- first_name: Michele
full_name: Calos, Michele
last_name: Calos
citation:
ama: Zhu F, Gamboa M, Farruggio A, et al. DICE, an efficient system for iterative
genomic editing in human pluripotent stem cells. Nucleic Acids Research.
2014;42(5). doi:10.1093/nar/gkt1290
apa: Zhu, F., Gamboa, M., Farruggio, A., Hippenmeyer, S., Tasic, B., Schüle, B.,
… Calos, M. (2014). DICE, an efficient system for iterative genomic editing in
human pluripotent stem cells. Nucleic Acids Research. Oxford University
Press. https://doi.org/10.1093/nar/gkt1290
chicago: Zhu, Fangfang, Matthew Gamboa, Alfonso Farruggio, Simon Hippenmeyer, Bosiljka
Tasic, Birgitt Schüle, Yanru Chen Tsai, and Michele Calos. “DICE, an Efficient
System for Iterative Genomic Editing in Human Pluripotent Stem Cells.” Nucleic
Acids Research. Oxford University Press, 2014. https://doi.org/10.1093/nar/gkt1290.
ieee: F. Zhu et al., “DICE, an efficient system for iterative genomic editing
in human pluripotent stem cells,” Nucleic Acids Research, vol. 42, no.
5. Oxford University Press, 2014.
ista: Zhu F, Gamboa M, Farruggio A, Hippenmeyer S, Tasic B, Schüle B, Chen Tsai
Y, Calos M. 2014. DICE, an efficient system for iterative genomic editing in human
pluripotent stem cells. Nucleic Acids Research. 42(5), e34.
mla: Zhu, Fangfang, et al. “DICE, an Efficient System for Iterative Genomic Editing
in Human Pluripotent Stem Cells.” Nucleic Acids Research, vol. 42, no.
5, e34, Oxford University Press, 2014, doi:10.1093/nar/gkt1290.
short: F. Zhu, M. Gamboa, A. Farruggio, S. Hippenmeyer, B. Tasic, B. Schüle, Y.
Chen Tsai, M. Calos, Nucleic Acids Research 42 (2014).
date_created: 2018-12-11T11:56:38Z
date_published: 2014-03-05T00:00:00Z
date_updated: 2021-01-12T06:56:22Z
day: '05'
ddc:
- '571'
- '610'
department:
- _id: SiHi
doi: 10.1093/nar/gkt1290
file:
- access_level: open_access
checksum: e9268f5f96a820f04d7ebbf85927c3cb
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:15Z
date_updated: 2020-07-14T12:45:35Z
file_id: '4738'
file_name: IST-2018-961-v1+1_2014_Hippenmeyer_DICE.pdf
file_size: 11044478
relation: main_file
file_date_updated: 2020-07-14T12:45:35Z
has_accepted_license: '1'
intvolume: ' 42'
issue: '5'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Preprint
publication: Nucleic Acids Research
publication_status: published
publisher: Oxford University Press
publist_id: '4684'
pubrep_id: '961'
quality_controlled: '1'
scopus_import: 1
status: public
title: DICE, an efficient system for iterative genomic editing in human pluripotent
stem cells
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 42
year: '2014'
...
---
_id: '2265'
abstract:
- lang: eng
text: Coordinated migration of newly-born neurons to their target territories is
essential for correct neuronal circuit assembly in the developing brain. Although
a cohort of signaling pathways has been implicated in the regulation of cortical
projection neuron migration, the precise molecular mechanisms and how a balanced
interplay of cell-autonomous and non-autonomous functions of candidate signaling
molecules controls the discrete steps in the migration process, are just being
revealed. In this chapter, I will focally review recent advances that improved
our understanding of the cell-autonomous and possible cell-nonautonomous functions
of the evolutionarily conserved LIS1/NDEL1-complex in regulating the sequential
steps of cortical projection neuron migration. I will then elaborate on the emerging
concept that the Reelin signaling pathway, acts exactly at precise stages in the
course of cortical projection neuron migration. Lastly, I will discuss how finely
tuned transcriptional programs and downstream effectors govern particular aspects
in driving radial migration at discrete stages and how they regulate the precise
positioning of cortical projection neurons in the developing cerebral cortex.
alternative_title:
- Advances in Experimental Medicine and Biology
author:
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
citation:
ama: 'Hippenmeyer S. Molecular pathways controlling the sequential steps of cortical
projection neuron migration. In: Nguyen L, ed. Cellular and Molecular Control
of Neuronal Migration. Vol 800. Springer; 2014:1-24. doi:10.1007/978-94-007-7687-6_1'
apa: Hippenmeyer, S. (2014). Molecular pathways controlling the sequential steps
of cortical projection neuron migration. In L. Nguyen (Ed.), Cellular and
Molecular Control of Neuronal Migration (Vol. 800, pp. 1–24). Springer. https://doi.org/10.1007/978-94-007-7687-6_1
chicago: Hippenmeyer, Simon. “Molecular Pathways Controlling the Sequential Steps
of Cortical Projection Neuron Migration.” In Cellular and Molecular Control
of Neuronal Migration, edited by Laurent Nguyen, 800:1–24. Springer, 2014.
https://doi.org/10.1007/978-94-007-7687-6_1.
ieee: S. Hippenmeyer, “Molecular pathways controlling the sequential steps of cortical
projection neuron migration,” in Cellular and Molecular Control of Neuronal
Migration, vol. 800, L. Nguyen, Ed. Springer, 2014, pp. 1–24.
ista: 'Hippenmeyer S. 2014.Molecular pathways controlling the sequential steps of
cortical projection neuron migration. In: Cellular and Molecular Control of Neuronal
Migration. Advances in Experimental Medicine and Biology, vol. 800, 1–24.'
mla: Hippenmeyer, Simon. “Molecular Pathways Controlling the Sequential Steps of
Cortical Projection Neuron Migration.” Cellular and Molecular Control of Neuronal
Migration, edited by Laurent Nguyen, vol. 800, Springer, 2014, pp. 1–24, doi:10.1007/978-94-007-7687-6_1.
short: S. Hippenmeyer, in:, L. Nguyen (Ed.), Cellular and Molecular Control of
Neuronal Migration, Springer, 2014, pp. 1–24.
date_created: 2018-12-11T11:56:39Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:56:23Z
day: '01'
department:
- _id: SiHi
doi: 10.1007/978-94-007-7687-6_1
editor:
- first_name: Laurent
full_name: Nguyen, Laurent
last_name: Nguyen
intvolume: ' 800'
language:
- iso: eng
month: '01'
oa_version: None
page: 1 - 24
publication: ' Cellular and Molecular Control of Neuronal Migration'
publication_status: published
publisher: Springer
publist_id: '4679'
quality_controlled: '1'
scopus_import: 1
status: public
title: Molecular pathways controlling the sequential steps of cortical projection
neuron migration
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 800
year: '2014'
...
---
_id: '2275'
abstract:
- lang: eng
text: "Energies with high-order non-submodular interactions have been shown to be
very useful in vision due to their high modeling power. Optimization of such energies,
however, is generally NP-hard. A naive approach that works for small problem instances
is exhaustive search, that is, enumeration of all possible labelings of the underlying
graph. We propose a general minimization approach for large graphs based on enumeration
of labelings of certain small patches. \r\nThis partial enumeration technique
reduces complex high-order energy formulations to pairwise Constraint Satisfaction
Problems with unary costs (uCSP), which can be efficiently solved using standard
methods like TRW-S. Our approach outperforms a number of existing state-of-the-art
algorithms on well known difficult problems (e.g. curvature regularization, stereo,
deconvolution); it gives near global minimum and better speed. \r\nOur main application
of interest is curvature regularization. In the context of segmentation, our partial
enumeration technique allows to evaluate curvature directly on small patches using
a novel integral geometry approach.\r\n"
author:
- first_name: Carl
full_name: Olsson, Carl
last_name: Olsson
- first_name: Johannes
full_name: Ulen, Johannes
last_name: Ulen
- first_name: Yuri
full_name: Boykov, Yuri
last_name: Boykov
- first_name: Vladimir
full_name: Kolmogorov, Vladimir
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
citation:
ama: 'Olsson C, Ulen J, Boykov Y, Kolmogorov V. Partial enumeration and curvature
regularization. In: IEEE; 2014:2936-2943. doi:10.1109/ICCV.2013.365'
apa: 'Olsson, C., Ulen, J., Boykov, Y., & Kolmogorov, V. (2014). Partial enumeration
and curvature regularization (pp. 2936–2943). Presented at the ICCV: International
Conference on Computer Vision, Sydney, Australia: IEEE. https://doi.org/10.1109/ICCV.2013.365'
chicago: Olsson, Carl, Johannes Ulen, Yuri Boykov, and Vladimir Kolmogorov. “Partial
Enumeration and Curvature Regularization,” 2936–43. IEEE, 2014. https://doi.org/10.1109/ICCV.2013.365.
ieee: 'C. Olsson, J. Ulen, Y. Boykov, and V. Kolmogorov, “Partial enumeration and
curvature regularization,” presented at the ICCV: International Conference on
Computer Vision, Sydney, Australia, 2014, pp. 2936–2943.'
ista: 'Olsson C, Ulen J, Boykov Y, Kolmogorov V. 2014. Partial enumeration and curvature
regularization. ICCV: International Conference on Computer Vision, 2936–2943.'
mla: Olsson, Carl, et al. Partial Enumeration and Curvature Regularization.
IEEE, 2014, pp. 2936–43, doi:10.1109/ICCV.2013.365.
short: C. Olsson, J. Ulen, Y. Boykov, V. Kolmogorov, in:, IEEE, 2014, pp. 2936–2943.
conference:
end_date: 2013-12-08
location: Sydney, Australia
name: 'ICCV: International Conference on Computer Vision'
start_date: 2013-12-01
date_created: 2018-12-11T11:56:42Z
date_published: 2014-03-03T00:00:00Z
date_updated: 2021-01-12T06:56:28Z
day: '03'
ddc:
- '000'
department:
- _id: VlKo
doi: 10.1109/ICCV.2013.365
file:
- access_level: open_access
checksum: 4a74b5c92d6dcd2348c2c10ec8dd18bf
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:30Z
date_updated: 2020-07-14T12:45:36Z
file_id: '4754'
file_name: IST-2016-566-v1+1_iccv13_part_enumeration.pdf
file_size: 378601
relation: main_file
file_date_updated: 2020-07-14T12:45:36Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 2936 - 2943
publication_status: published
publisher: IEEE
publist_id: '4669'
pubrep_id: '566'
quality_controlled: '1'
scopus_import: 1
status: public
title: Partial enumeration and curvature regularization
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '2281'
abstract:
- lang: eng
text: We consider two-dimensional Bose-Einstein condensates with attractive interaction,
described by the Gross-Pitaevskii functional. Minimizers of this functional exist
only if the interaction strength a satisfies {Mathematical expression}, where
Q is the unique positive radial solution of {Mathematical expression} in {Mathematical
expression}. We present a detailed analysis of the behavior of minimizers as a
approaches a*, where all the mass concentrates at a global minimum of the trapping
potential.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yujin
full_name: Guo, Yujin
last_name: Guo
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Guo Y, Seiringer R. On the mass concentration for Bose-Einstein condensates
with attractive interactions. Letters in Mathematical Physics. 2014;104(2):141-156.
doi:10.1007/s11005-013-0667-9
apa: Guo, Y., & Seiringer, R. (2014). On the mass concentration for Bose-Einstein
condensates with attractive interactions. Letters in Mathematical Physics.
Springer. https://doi.org/10.1007/s11005-013-0667-9
chicago: Guo, Yujin, and Robert Seiringer. “On the Mass Concentration for Bose-Einstein
Condensates with Attractive Interactions.” Letters in Mathematical Physics.
Springer, 2014. https://doi.org/10.1007/s11005-013-0667-9.
ieee: Y. Guo and R. Seiringer, “On the mass concentration for Bose-Einstein condensates
with attractive interactions,” Letters in Mathematical Physics, vol. 104,
no. 2. Springer, pp. 141–156, 2014.
ista: Guo Y, Seiringer R. 2014. On the mass concentration for Bose-Einstein condensates
with attractive interactions. Letters in Mathematical Physics. 104(2), 141–156.
mla: Guo, Yujin, and Robert Seiringer. “On the Mass Concentration for Bose-Einstein
Condensates with Attractive Interactions.” Letters in Mathematical Physics,
vol. 104, no. 2, Springer, 2014, pp. 141–56, doi:10.1007/s11005-013-0667-9.
short: Y. Guo, R. Seiringer, Letters in Mathematical Physics 104 (2014) 141–156.
date_created: 2018-12-11T11:56:44Z
date_published: 2014-02-01T00:00:00Z
date_updated: 2024-02-14T12:19:42Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s11005-013-0667-9
external_id:
arxiv:
- '1301.5682'
intvolume: ' 104'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1301.5682
month: '02'
oa: 1
oa_version: Preprint
page: 141 - 156
publication: Letters in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '4653'
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the mass concentration for Bose-Einstein condensates with attractive interactions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 104
year: '2014'
...
---
_id: '2285'
abstract:
- lang: eng
text: GABAergic inhibitory interneurons control fundamental aspects of neuronal
network function. Their functional roles are assumed to be defined by the identity
of their input synapses, the architecture of their dendritic tree, the passive
and active membrane properties and finally the nature of their postsynaptic targets.
Indeed, interneurons display a high degree of morphological and physiological
heterogeneity. However, whether their morphological and physiological characteristics
are correlated and whether interneuron diversity can be described by a continuum
of GABAergic cell types or by distinct classes has remained unclear. Here we perform
a detailed morphological and physiological characterization of GABAergic cells
in the dentate gyrus, the input region of the hippocampus. To achieve an unbiased
and efficient sampling and classification we used knock-in mice expressing the
enhanced green fluorescent protein (eGFP) in glutamate decarboxylase 67 (GAD67)-positive
neurons and performed cluster analysis. We identified five interneuron classes,
each of them characterized by a distinct set of anatomical and physiological parameters.
Cross-correlation analysis further revealed a direct relation between morphological
and physiological properties indicating that dentate gyrus interneurons fall into
functionally distinct classes which may differentially control neuronal network
activity.
acknowledgement: 'Funded by Deutsche Forschungsgemeinschaft. Grant Numbers: SFB 505,
SFB 780, BA1582/2-1 Excellence Initiative of the German Research Foundation (Spemann
Graduate School). Grant Number: GSC-4 Lichtenberg Professorship-Award (VW-Foundation);
Schram-Foundation; Excellence Initiative Brain Links-Brain Tools. The authors thank
Drs. Jonas-Frederic Sauer and Claudio Elgueta for critically reading the manuscript.
They also thank Karin Winterhalter, Margit Northemann and Ulrich Nöller for technical
assistance.'
author:
- first_name: Jonas
full_name: Hosp, Jonas
last_name: Hosp
- first_name: Michael
full_name: Strüber, Michael
last_name: Strüber
- first_name: Yuchio
full_name: Yanagawa, Yuchio
last_name: Yanagawa
- first_name: Kunihiko
full_name: Obata, Kunihiko
last_name: Obata
- first_name: Imre
full_name: Vida, Imre
last_name: Vida
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
- first_name: Marlene
full_name: Bartos, Marlene
last_name: Bartos
citation:
ama: Hosp J, Strüber M, Yanagawa Y, et al. Morpho-physiological criteria divide
dentate gyrus interneurons into classes. Hippocampus. 2014;23(2):189-203.
doi:10.1002/hipo.22214
apa: Hosp, J., Strüber, M., Yanagawa, Y., Obata, K., Vida, I., Jonas, P. M., &
Bartos, M. (2014). Morpho-physiological criteria divide dentate gyrus interneurons
into classes. Hippocampus. Wiley-Blackwell. https://doi.org/10.1002/hipo.22214
chicago: Hosp, Jonas, Michael Strüber, Yuchio Yanagawa, Kunihiko Obata, Imre Vida,
Peter M Jonas, and Marlene Bartos. “Morpho-Physiological Criteria Divide Dentate
Gyrus Interneurons into Classes.” Hippocampus. Wiley-Blackwell, 2014. https://doi.org/10.1002/hipo.22214.
ieee: J. Hosp et al., “Morpho-physiological criteria divide dentate gyrus
interneurons into classes,” Hippocampus, vol. 23, no. 2. Wiley-Blackwell,
pp. 189–203, 2014.
ista: Hosp J, Strüber M, Yanagawa Y, Obata K, Vida I, Jonas PM, Bartos M. 2014.
Morpho-physiological criteria divide dentate gyrus interneurons into classes.
Hippocampus. 23(2), 189–203.
mla: Hosp, Jonas, et al. “Morpho-Physiological Criteria Divide Dentate Gyrus Interneurons
into Classes.” Hippocampus, vol. 23, no. 2, Wiley-Blackwell, 2014, pp.
189–203, doi:10.1002/hipo.22214.
short: J. Hosp, M. Strüber, Y. Yanagawa, K. Obata, I. Vida, P.M. Jonas, M. Bartos,
Hippocampus 23 (2014) 189–203.
date_created: 2018-12-11T11:56:46Z
date_published: 2014-02-01T00:00:00Z
date_updated: 2021-01-12T06:56:32Z
day: '01'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1002/hipo.22214
file:
- access_level: open_access
checksum: ff6bc75a79dbc985a2e31b79253e6444
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:54Z
date_updated: 2020-07-14T12:45:37Z
file_id: '5178'
file_name: IST-2016-461-v1+1_Hosp_et_al-2014-Hippocampus.pdf
file_size: 801589
relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: ' 23'
issue: '2'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: 189 - 203
publication: Hippocampus
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4646'
pubrep_id: '461'
quality_controlled: '1'
scopus_import: 1
status: public
title: Morpho-physiological criteria divide dentate gyrus interneurons into classes
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2014'
...
---
_id: '2407'
abstract:
- lang: eng
text: 'Two definitions of the effective mass of a particle interacting with a quantum
field, such as a polaron, are considered and shown to be equal in models similar
to the Fröhlich polaron model. These are: 1. the mass defined by the low momentum
energy E(P)≈E(0)+P2/2 M of the translation invariant system constrained to have
momentum P and 2. the mass M of a simple particle in an arbitrary slowly varying
external potential, V, described by the nonrelativistic Schrödinger equation,
whose ground state energy equals that of the combined particle/field system in
a bound state in the same V.'
author:
- first_name: Élliott
full_name: Lieb, Élliott
last_name: Lieb
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Lieb É, Seiringer R. Equivalence of two definitions of the effective mass of
a polaron. Journal of Statistical Physics. 2014;154(1-2):51-57. doi:10.1007/s10955-013-0791-z
apa: Lieb, É., & Seiringer, R. (2014). Equivalence of two definitions of the
effective mass of a polaron. Journal of Statistical Physics. Springer.
https://doi.org/10.1007/s10955-013-0791-z
chicago: Lieb, Élliott, and Robert Seiringer. “Equivalence of Two Definitions of
the Effective Mass of a Polaron.” Journal of Statistical Physics. Springer,
2014. https://doi.org/10.1007/s10955-013-0791-z.
ieee: É. Lieb and R. Seiringer, “Equivalence of two definitions of the effective
mass of a polaron,” Journal of Statistical Physics, vol. 154, no. 1–2.
Springer, pp. 51–57, 2014.
ista: Lieb É, Seiringer R. 2014. Equivalence of two definitions of the effective
mass of a polaron. Journal of Statistical Physics. 154(1–2), 51–57.
mla: Lieb, Élliott, and Robert Seiringer. “Equivalence of Two Definitions of the
Effective Mass of a Polaron.” Journal of Statistical Physics, vol. 154,
no. 1–2, Springer, 2014, pp. 51–57, doi:10.1007/s10955-013-0791-z.
short: É. Lieb, R. Seiringer, Journal of Statistical Physics 154 (2014) 51–57.
date_created: 2018-12-11T11:57:29Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:57:18Z
day: '01'
doi: 10.1007/s10955-013-0791-z
extern: '1'
intvolume: ' 154'
issue: 1-2
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1304.1780
month: '01'
oa: 1
oa_version: Submitted Version
page: 51 - 57
project:
- _id: 26450934-B435-11E9-9278-68D0E5697425
name: NSERC Postdoctoral fellowship
publication: Journal of Statistical Physics
publication_status: published
publisher: Springer
publist_id: '4519'
quality_controlled: '1'
status: public
title: Equivalence of two definitions of the effective mass of a polaron
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 154
year: '2014'
...
---
_id: '6739'
abstract:
- lang: eng
text: 'We explore the relationship between polar and RM codes and we describe a
coding scheme which improves upon the performance of the standard polar code at
practical block lengths. Our starting point is the experimental observation that
RM codes have a smaller error probability than polar codes under MAP decoding.
This motivates us to introduce a family of codes that “interpolates” between RM
and polar codes, call this family C inter = {C α : α ∈ [0, 1j}, where C α|α=1
is the original polar code, and C α|α=0 is an RM code. Based on numerical observations,
we remark that the error probability under MAP decoding is an increasing function
of α. MAP decoding has in general exponential complexity, but empirically the
performance of polar codes at finite block lengths is boosted by moving along
the family Cinter even under low-complexity decoding schemes such as, for instance,
belief propagation or successive cancellation list decoder. We demonstrate the
performance gain via numerical simulations for transmission over the erasure channel
as well as the Gaussian channel.'
arxiv: 1
author:
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Hamed
full_name: Hassani, Hamed
last_name: Hassani
- first_name: Rudiger
full_name: Urbanke, Rudiger
last_name: Urbanke
citation:
ama: 'Mondelli M, Hassani H, Urbanke R. From polar to Reed-Muller codes: A technique
to improve the finite-length performance. IEEE Transactions on Communications.
2014;62(9):3084-3091. doi:10.1109/tcomm.2014.2345069'
apa: 'Mondelli, M., Hassani, H., & Urbanke, R. (2014). From polar to Reed-Muller
codes: A technique to improve the finite-length performance. IEEE Transactions
on Communications. IEEE. https://doi.org/10.1109/tcomm.2014.2345069'
chicago: 'Mondelli, Marco, Hamed Hassani, and Rudiger Urbanke. “From Polar to Reed-Muller
Codes: A Technique to Improve the Finite-Length Performance.” IEEE Transactions
on Communications. IEEE, 2014. https://doi.org/10.1109/tcomm.2014.2345069.'
ieee: 'M. Mondelli, H. Hassani, and R. Urbanke, “From polar to Reed-Muller codes:
A technique to improve the finite-length performance,” IEEE Transactions on
Communications, vol. 62, no. 9. IEEE, pp. 3084–3091, 2014.'
ista: 'Mondelli M, Hassani H, Urbanke R. 2014. From polar to Reed-Muller codes:
A technique to improve the finite-length performance. IEEE Transactions on Communications.
62(9), 3084–3091.'
mla: 'Mondelli, Marco, et al. “From Polar to Reed-Muller Codes: A Technique to Improve
the Finite-Length Performance.” IEEE Transactions on Communications, vol.
62, no. 9, IEEE, 2014, pp. 3084–91, doi:10.1109/tcomm.2014.2345069.'
short: M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Communications
62 (2014) 3084–3091.
date_created: 2019-07-31T07:20:21Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T08:08:46Z
day: '01'
doi: 10.1109/tcomm.2014.2345069
extern: '1'
external_id:
arxiv:
- '1401.3127'
intvolume: ' 62'
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1401.3127
month: '09'
oa: 1
oa_version: Preprint
page: 3084-3091
publication: IEEE Transactions on Communications
publication_identifier:
issn:
- 0090-6778
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'From polar to Reed-Muller codes: A technique to improve the finite-length
performance'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2014'
...
---
_id: '6740'
abstract:
- lang: eng
text: We describe coding techniques that achieve the capacity of a discrete memoryless
asymmetric channel. To do so, we discuss how recent advances in coding for symmetric
channels yield more efficient solutions also for the asymmetric case. In more
detail, we consider three basic approaches. The first one is Gallager's scheme
that concatenates a linear code with a non-linear mapper, in order to bias the
input distribution. We explicitly show that both polar codes and spatially coupled
codes can be employed in this scenario. Further, we derive a scaling law between
the gap to capacity, the cardinality of channel input and output alphabets, and
the required size of the mapper. The second one is an integrated approach in which
the coding scheme is used both for source coding, in order to create codewords
with the capacity-achieving distribution, and for channel coding, in order to
provide error protection. Such a technique has been recently introduced by Honda
and Yamamoto in the context of polar codes, and we show how to apply it also to
the design of sparse graph codes. The third approach is based on an idea due to
Böcherer and Mathar and separates completely the two tasks of source coding and
channel coding by “chaining” together several codewords. We prove that we can
combine any suitable source code with any suitable channel code in order to provide
optimal schemes for asymmetric channels. In particular, polar codes and spatially
coupled codes fulfill the required conditions.
arxiv: 1
author:
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Rudiger
full_name: Urbanke, Rudiger
last_name: Urbanke
- first_name: Hamed
full_name: Hassani, Hamed
last_name: Hassani
citation:
ama: 'Mondelli M, Urbanke R, Hassani H. How to achieve the capacity of asymmetric
channels. In: 52nd Annual Allerton Conference on Communication, Control, and
Computing. IEEE; 2014:789-796. doi:10.1109/allerton.2014.7028535'
apa: 'Mondelli, M., Urbanke, R., & Hassani, H. (2014). How to achieve the capacity
of asymmetric channels. In 52nd Annual Allerton Conference on Communication,
Control, and Computing (pp. 789–796). Monticello, IL, United States: IEEE.
https://doi.org/10.1109/allerton.2014.7028535'
chicago: Mondelli, Marco, Rudiger Urbanke, and Hamed Hassani. “How to Achieve the
Capacity of Asymmetric Channels.” In 52nd Annual Allerton Conference on Communication,
Control, and Computing, 789–96. IEEE, 2014. https://doi.org/10.1109/allerton.2014.7028535.
ieee: M. Mondelli, R. Urbanke, and H. Hassani, “How to achieve the capacity of asymmetric
channels,” in 52nd Annual Allerton Conference on Communication, Control, and
Computing, Monticello, IL, United States, 2014, pp. 789–796.
ista: Mondelli M, Urbanke R, Hassani H. 2014. How to achieve the capacity of asymmetric
channels. 52nd Annual Allerton Conference on Communication, Control, and Computing.
Allerton Conference on Communication, Control, and Computing, 789–796.
mla: Mondelli, Marco, et al. “How to Achieve the Capacity of Asymmetric Channels.”
52nd Annual Allerton Conference on Communication, Control, and Computing,
IEEE, 2014, pp. 789–96, doi:10.1109/allerton.2014.7028535.
short: M. Mondelli, R. Urbanke, H. Hassani, in:, 52nd Annual Allerton Conference
on Communication, Control, and Computing, IEEE, 2014, pp. 789–796.
conference:
end_date: 2014-10-03
location: Monticello, IL, United States
name: Allerton Conference on Communication, Control, and Computing
start_date: 2014-09-30
date_created: 2019-07-31T07:24:23Z
date_published: 2014-10-01T00:00:00Z
date_updated: 2023-02-23T12:49:36Z
day: '01'
doi: 10.1109/allerton.2014.7028535
extern: '1'
external_id:
arxiv:
- '1406.7373'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1406.7373
month: '10'
oa: 1
oa_version: Preprint
page: 789-796
publication: 52nd Annual Allerton Conference on Communication, Control, and Computing
publication_identifier:
eisbn:
- 978-1-4799-8009-3
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
record:
- id: '6678'
relation: later_version
status: public
status: public
title: How to achieve the capacity of asymmetric channels
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '6744'
abstract:
- lang: eng
text: With the aim of extending the coverage and improving the performance of impulse
radio ultra-wideband (UWB) systems, this paper focuses on developing a novel single
differential encoded decode and forward (DF) non-cooperative relaying scheme (NCR).
To favor simple receiver structures, differential noncoherent detection is employed
which enables effective energy capture without any channel estimation. Putting
emphasis on the general case of multi-hop relaying, we illustrate an original
algorithm for the joint power allocation and path selection (JPAPS), minimizing
an approximate expression of the overall bit error rate (BER). In particular,
after deriving a closed-form power allocation strategy, the optimal path selection
is reduced to a shortest path problem on a connected graph, which can be solved
without any topology information with complexity O(N 3 ), N being the number of
available relays of the network. An approximate scheme is also presented, which
reduces the complexity to O(N 2 ) while showing a negligible performance loss,
and for benchmarking purposes, an exhaustive-search based multi-hop DF cooperative
strategy is derived. Simulation results for various network setups corroborate
the effectiveness of the proposed low-complexity JPAPS algorithm, which favorably
compares to existing AF and DF relaying methods.
author:
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Qi
full_name: Zhou, Qi
last_name: Zhou
- first_name: Vincenzo
full_name: Lottici, Vincenzo
last_name: Lottici
- first_name: Xiaoli
full_name: Ma, Xiaoli
last_name: Ma
citation:
ama: Mondelli M, Zhou Q, Lottici V, Ma X. Joint power allocation and path selection
for multi-hop noncoherent decode and forward UWB communications. IEEE Transactions
on Wireless Communications. 2014;13(3):1397-1409. doi:10.1109/twc.2014.020914.130669
apa: Mondelli, M., Zhou, Q., Lottici, V., & Ma, X. (2014). Joint power allocation
and path selection for multi-hop noncoherent decode and forward UWB communications.
IEEE Transactions on Wireless Communications. IEEE. https://doi.org/10.1109/twc.2014.020914.130669
chicago: Mondelli, Marco, Qi Zhou, Vincenzo Lottici, and Xiaoli Ma. “Joint Power
Allocation and Path Selection for Multi-Hop Noncoherent Decode and Forward UWB
Communications.” IEEE Transactions on Wireless Communications. IEEE, 2014.
https://doi.org/10.1109/twc.2014.020914.130669.
ieee: M. Mondelli, Q. Zhou, V. Lottici, and X. Ma, “Joint power allocation and path
selection for multi-hop noncoherent decode and forward UWB communications,” IEEE
Transactions on Wireless Communications, vol. 13, no. 3. IEEE, pp. 1397–1409,
2014.
ista: Mondelli M, Zhou Q, Lottici V, Ma X. 2014. Joint power allocation and path
selection for multi-hop noncoherent decode and forward UWB communications. IEEE
Transactions on Wireless Communications. 13(3), 1397–1409.
mla: Mondelli, Marco, et al. “Joint Power Allocation and Path Selection for Multi-Hop
Noncoherent Decode and Forward UWB Communications.” IEEE Transactions on Wireless
Communications, vol. 13, no. 3, IEEE, 2014, pp. 1397–409, doi:10.1109/twc.2014.020914.130669.
short: M. Mondelli, Q. Zhou, V. Lottici, X. Ma, IEEE Transactions on Wireless Communications
13 (2014) 1397–1409.
date_created: 2019-07-31T09:05:07Z
date_published: 2014-03-20T00:00:00Z
date_updated: 2021-01-12T08:08:48Z
day: '20'
doi: 10.1109/twc.2014.020914.130669
extern: '1'
intvolume: ' 13'
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 1397-1409
publication: IEEE Transactions on Wireless Communications
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: Joint power allocation and path selection for multi-hop noncoherent decode
and forward UWB communications
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2014'
...
---
_id: '6853'
abstract:
- lang: eng
text: This monograph presents a short course in computational geometry and topology.
In the first part the book covers Voronoi diagrams and Delaunay triangulations,
then it presents the theory of alpha complexes which play a crucial role in biology.
The central part of the book is the homology theory and their computation, including
the theory of persistence which is indispensable for applications, e.g. shape
reconstruction. The target audience comprises researchers and practitioners in
mathematics, biology, neuroscience and computer science, but the book may also
be beneficial to graduate students of these fields.
alternative_title:
- SpringerBriefs in Applied Sciences and Technology
article_processing_charge: No
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Edelsbrunner H. A Short Course in Computational Geometry and Topology.
1st ed. Cham: Springer Nature; 2014. doi:10.1007/978-3-319-05957-0'
apa: 'Edelsbrunner, H. (2014). A Short Course in Computational Geometry and Topology
(1st ed.). Cham: Springer Nature. https://doi.org/10.1007/978-3-319-05957-0'
chicago: 'Edelsbrunner, Herbert. A Short Course in Computational Geometry and
Topology. 1st ed. SpringerBriefs in Applied Sciences and Technology. Cham:
Springer Nature, 2014. https://doi.org/10.1007/978-3-319-05957-0.'
ieee: 'H. Edelsbrunner, A Short Course in Computational Geometry and Topology,
1st ed. Cham: Springer Nature, 2014.'
ista: 'Edelsbrunner H. 2014. A Short Course in Computational Geometry and Topology
1st ed., Cham: Springer Nature, IX, 110p.'
mla: Edelsbrunner, Herbert. A Short Course in Computational Geometry and Topology.
1st ed., Springer Nature, 2014, doi:10.1007/978-3-319-05957-0.
short: H. Edelsbrunner, A Short Course in Computational Geometry and Topology, 1st
ed., Springer Nature, Cham, 2014.
date_created: 2019-09-06T09:22:33Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2022-03-04T07:47:54Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-319-05957-0
edition: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: IX, 110
place: Cham
publication_identifier:
eisbn:
- 9-783-3190-5957-0
eissn:
- 2191-5318
isbn:
- 9-783-3190-5956-3
issn:
- 2191-530X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: available as eBook via catalog IST BookList
relation: other
url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=356106
- description: available via catalog IST BookList
relation: other
url: https://koha.app.ist.ac.at/cgi-bin/koha/opac-detail.pl?biblionumber=373842
scopus_import: '1'
series_title: SpringerBriefs in Applied Sciences and Technology
status: public
title: A Short Course in Computational Geometry and Topology
type: book
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '7038'
article_processing_charge: No
author:
- first_name: Kristóf
full_name: Huszár, Kristóf
id: 33C26278-F248-11E8-B48F-1D18A9856A87
last_name: Huszár
orcid: 0000-0002-5445-5057
- first_name: Michal
full_name: Rolinek, Michal
id: 3CB3BC06-F248-11E8-B48F-1D18A9856A87
last_name: Rolinek
citation:
ama: Huszár K, Rolinek M. Playful Math - An Introduction to Mathematical Games.
IST Austria
apa: Huszár, K., & Rolinek, M. (n.d.). Playful Math - An introduction to
mathematical games. IST Austria.
chicago: Huszár, Kristóf, and Michal Rolinek. Playful Math - An Introduction
to Mathematical Games. IST Austria, n.d.
ieee: K. Huszár and M. Rolinek, Playful Math - An introduction to mathematical
games. IST Austria.
ista: Huszár K, Rolinek M. Playful Math - An introduction to mathematical games,
IST Austria, 5p.
mla: Huszár, Kristóf, and Michal Rolinek. Playful Math - An Introduction to Mathematical
Games. IST Austria.
short: K. Huszár, M. Rolinek, Playful Math - An Introduction to Mathematical Games,
IST Austria, n.d.
date_created: 2019-11-18T15:57:05Z
date_published: 2014-06-30T00:00:00Z
date_updated: 2020-07-14T23:11:45Z
day: '30'
ddc:
- '510'
department:
- _id: VlKo
- _id: UlWa
file:
- access_level: open_access
checksum: 2b94e5e1f4c3fe8ab89b12806276fb09
content_type: application/pdf
creator: dernst
date_created: 2019-11-18T15:57:51Z
date_updated: 2020-07-14T12:47:48Z
file_id: '7039'
file_name: 2014_Playful_Math_Huszar.pdf
file_size: 511233
relation: main_file
file_date_updated: 2020-07-14T12:47:48Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '5'
publication_status: draft
publisher: IST Austria
status: public
title: Playful Math - An introduction to mathematical games
type: working_paper
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2014'
...
---
_id: '7071'
abstract:
- lang: eng
text: Spin and orbital quantum numbers play a key role in the physics of Mott insulators,
but in most systems they are connected only indirectly—via the Pauli exclusion
principle and the Coulomb interaction. Iridium-based oxides (iridates) introduce
strong spin–orbit coupling directly, such that these numbers become entwined together
and the Mott physics attains a strong orbital character. In the layered honeycomb
iridates this is thought to generate highly spin–anisotropic magnetic interactions,
coupling the spin to a given spatial direction of exchange and leading to strongly
frustrated magnetism. Here we report a new iridate structure that has the same
local connectivity as the layered honeycomb and exhibits striking evidence for
highly spin–anisotropic exchange. The basic structural units of this material
suggest that a new family of three-dimensional structures could exist, the ‘harmonic
honeycomb’ iridates, of which the present compound is the first example.
article_number: '4203'
article_processing_charge: No
article_type: original
author:
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: Tess E.
full_name: Smidt, Tess E.
last_name: Smidt
- first_name: Itamar
full_name: Kimchi, Itamar
last_name: Kimchi
- first_name: Nicholas P.
full_name: Breznay, Nicholas P.
last_name: Breznay
- first_name: Alun
full_name: Biffin, Alun
last_name: Biffin
- first_name: Sungkyun
full_name: Choi, Sungkyun
last_name: Choi
- first_name: Roger D.
full_name: Johnson, Roger D.
last_name: Johnson
- first_name: Radu
full_name: Coldea, Radu
last_name: Coldea
- first_name: Pilanda
full_name: Watkins-Curry, Pilanda
last_name: Watkins-Curry
- first_name: Gregory T.
full_name: McCandless, Gregory T.
last_name: McCandless
- first_name: Julia Y.
full_name: Chan, Julia Y.
last_name: Chan
- first_name: Felipe
full_name: Gandara, Felipe
last_name: Gandara
- first_name: Z.
full_name: Islam, Z.
last_name: Islam
- first_name: Ashvin
full_name: Vishwanath, Ashvin
last_name: Vishwanath
- first_name: Arkady
full_name: Shekhter, Arkady
last_name: Shekhter
- first_name: Ross D.
full_name: McDonald, Ross D.
last_name: McDonald
- first_name: James G.
full_name: Analytis, James G.
last_name: Analytis
citation:
ama: Modic KA, Smidt TE, Kimchi I, et al. Realization of a three-dimensional spin–anisotropic
harmonic honeycomb iridate. Nature Communications. 2014;5. doi:10.1038/ncomms5203
apa: Modic, K. A., Smidt, T. E., Kimchi, I., Breznay, N. P., Biffin, A., Choi, S.,
… Analytis, J. G. (2014). Realization of a three-dimensional spin–anisotropic
harmonic honeycomb iridate. Nature Communications. Springer Science and
Business Media LLC. https://doi.org/10.1038/ncomms5203
chicago: Modic, Kimberly A, Tess E. Smidt, Itamar Kimchi, Nicholas P. Breznay, Alun
Biffin, Sungkyun Choi, Roger D. Johnson, et al. “Realization of a Three-Dimensional
Spin–Anisotropic Harmonic Honeycomb Iridate.” Nature Communications. Springer
Science and Business Media LLC, 2014. https://doi.org/10.1038/ncomms5203.
ieee: K. A. Modic et al., “Realization of a three-dimensional spin–anisotropic
harmonic honeycomb iridate,” Nature Communications, vol. 5. Springer Science
and Business Media LLC, 2014.
ista: Modic KA, Smidt TE, Kimchi I, Breznay NP, Biffin A, Choi S, Johnson RD, Coldea
R, Watkins-Curry P, McCandless GT, Chan JY, Gandara F, Islam Z, Vishwanath A,
Shekhter A, McDonald RD, Analytis JG. 2014. Realization of a three-dimensional
spin–anisotropic harmonic honeycomb iridate. Nature Communications. 5, 4203.
mla: Modic, Kimberly A., et al. “Realization of a Three-Dimensional Spin–Anisotropic
Harmonic Honeycomb Iridate.” Nature Communications, vol. 5, 4203, Springer
Science and Business Media LLC, 2014, doi:10.1038/ncomms5203.
short: K.A. Modic, T.E. Smidt, I. Kimchi, N.P. Breznay, A. Biffin, S. Choi, R.D.
Johnson, R. Coldea, P. Watkins-Curry, G.T. McCandless, J.Y. Chan, F. Gandara,
Z. Islam, A. Vishwanath, A. Shekhter, R.D. McDonald, J.G. Analytis, Nature Communications
5 (2014).
date_created: 2019-11-19T13:22:39Z
date_published: 2014-06-27T00:00:00Z
date_updated: 2021-01-12T08:11:42Z
day: '27'
ddc:
- '530'
doi: 10.1038/ncomms5203
extern: '1'
file:
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checksum: d290f0bfa93c5169cc6c8086874c5a78
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creator: dernst
date_created: 2019-11-26T12:44:23Z
date_updated: 2020-07-14T12:47:48Z
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file_name: 2014_NatureComm_Modic.pdf
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intvolume: ' 5'
language:
- iso: eng
month: '06'
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oa_version: Published Version
publication: Nature Communications
publication_identifier:
issn:
- 2041-1723
publication_status: published
publisher: Springer Science and Business Media LLC
quality_controlled: '1'
status: public
title: Realization of a three-dimensional spin–anisotropic harmonic honeycomb iridate
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2014'
...
---
_id: '7072'
abstract:
- lang: eng
text: We investigate the structural and magnetic properties of two molecule-based
magnets synthesized from the same starting components. Their different structural
motifs promote contrasting exchange pathways and consequently lead to markedly
different magnetic ground states. Through examination of their structural and
magnetic properties we show that [Cu(pyz)(H2O)(gly)2](ClO4)2 may be considered
a quasi-one-dimensional quantum Heisenberg antiferromagnet whereas the related
compound [Cu(pyz)(gly)](ClO4), which is formed from dimers of antiferromagnetically
interacting Cu2+ spins, remains disordered down to at least 0.03 K in zero field
but shows a field-temperature phase diagram reminiscent of that seen in materials
showing a Bose-Einstein condensation of magnons.
article_number: '207201'
article_processing_charge: No
article_type: original
author:
- first_name: T.
full_name: Lancaster, T.
last_name: Lancaster
- first_name: P. A.
full_name: Goddard, P. A.
last_name: Goddard
- first_name: S. J.
full_name: Blundell, S. J.
last_name: Blundell
- first_name: F. R.
full_name: Foronda, F. R.
last_name: Foronda
- first_name: S.
full_name: Ghannadzadeh, S.
last_name: Ghannadzadeh
- first_name: J. S.
full_name: Möller, J. S.
last_name: Möller
- first_name: P. J.
full_name: Baker, P. J.
last_name: Baker
- first_name: F. L.
full_name: Pratt, F. L.
last_name: Pratt
- first_name: C.
full_name: Baines, C.
last_name: Baines
- first_name: L.
full_name: Huang, L.
last_name: Huang
- first_name: J.
full_name: Wosnitza, J.
last_name: Wosnitza
- first_name: R. D.
full_name: McDonald, R. D.
last_name: McDonald
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: J.
full_name: Singleton, J.
last_name: Singleton
- first_name: C. V.
full_name: Topping, C. V.
last_name: Topping
- first_name: T. A. W.
full_name: Beale, T. A. W.
last_name: Beale
- first_name: F.
full_name: Xiao, F.
last_name: Xiao
- first_name: J. A.
full_name: Schlueter, J. A.
last_name: Schlueter
- first_name: A. M.
full_name: Barton, A. M.
last_name: Barton
- first_name: R. D.
full_name: Cabrera, R. D.
last_name: Cabrera
- first_name: K. E.
full_name: Carreiro, K. E.
last_name: Carreiro
- first_name: H. E.
full_name: Tran, H. E.
last_name: Tran
- first_name: J. L.
full_name: Manson, J. L.
last_name: Manson
citation:
ama: Lancaster T, Goddard PA, Blundell SJ, et al. Controlling magnetic order and
quantum disorder in molecule-based magnets. Physical Review Letters. 2014;112(20).
doi:10.1103/physrevlett.112.207201
apa: Lancaster, T., Goddard, P. A., Blundell, S. J., Foronda, F. R., Ghannadzadeh,
S., Möller, J. S., … Manson, J. L. (2014). Controlling magnetic order and quantum
disorder in molecule-based magnets. Physical Review Letters. APS. https://doi.org/10.1103/physrevlett.112.207201
chicago: Lancaster, T., P. A. Goddard, S. J. Blundell, F. R. Foronda, S. Ghannadzadeh,
J. S. Möller, P. J. Baker, et al. “Controlling Magnetic Order and Quantum Disorder
in Molecule-Based Magnets.” Physical Review Letters. APS, 2014. https://doi.org/10.1103/physrevlett.112.207201.
ieee: T. Lancaster et al., “Controlling magnetic order and quantum disorder
in molecule-based magnets,” Physical Review Letters, vol. 112, no. 20.
APS, 2014.
ista: Lancaster T, Goddard PA, Blundell SJ, Foronda FR, Ghannadzadeh S, Möller JS,
Baker PJ, Pratt FL, Baines C, Huang L, Wosnitza J, McDonald RD, Modic KA, Singleton
J, Topping CV, Beale TAW, Xiao F, Schlueter JA, Barton AM, Cabrera RD, Carreiro
KE, Tran HE, Manson JL. 2014. Controlling magnetic order and quantum disorder
in molecule-based magnets. Physical Review Letters. 112(20), 207201.
mla: Lancaster, T., et al. “Controlling Magnetic Order and Quantum Disorder in Molecule-Based
Magnets.” Physical Review Letters, vol. 112, no. 20, 207201, APS, 2014,
doi:10.1103/physrevlett.112.207201.
short: T. Lancaster, P.A. Goddard, S.J. Blundell, F.R. Foronda, S. Ghannadzadeh,
J.S. Möller, P.J. Baker, F.L. Pratt, C. Baines, L. Huang, J. Wosnitza, R.D. McDonald,
K.A. Modic, J. Singleton, C.V. Topping, T.A.W. Beale, F. Xiao, J.A. Schlueter,
A.M. Barton, R.D. Cabrera, K.E. Carreiro, H.E. Tran, J.L. Manson, Physical Review
Letters 112 (2014).
date_created: 2019-11-19T13:23:13Z
date_published: 2014-05-19T00:00:00Z
date_updated: 2021-01-12T08:11:42Z
day: '19'
doi: 10.1103/physrevlett.112.207201
extern: '1'
intvolume: ' 112'
issue: '20'
language:
- iso: eng
month: '05'
oa_version: None
publication: Physical Review Letters
publication_identifier:
eissn:
- 1079-7114
issn:
- 0031-9007
publication_status: published
publisher: APS
quality_controlled: '1'
status: public
title: Controlling magnetic order and quantum disorder in molecule-based magnets
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2014'
...
---
_id: '7300'
abstract:
- lang: eng
text: Photoinduced electron transfer (PET), which causes pH-dependent quenching
of fluorescent dyes, is more effectively introduced by phenolic groups than by
amino groups which have been much more commonly used so far. That is demonstrated
by fluorescence measurements involving several classes of fluorophores. Electrochemical
measurements show that PET in several amino-modified dyes is thermodynamically
favorable, even though it was not experimentally found, underlining the importance
of kinetic aspects to the process. Consequently, the attachment of phenolic groups
allows for fast and simple preparation of a wide selection of fluorescent pH-probes
with tailor-made spectral properties, sensitive ranges, and individual advantages,
so that a large number of applications can be realized. Fluorophores carrying
phenolic groups may also be used for sensing analytes other than pH or molecular
switching and signaling.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
full_name: Aigner, Daniel
last_name: Aigner
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Martin
full_name: Wilkening, Martin
last_name: Wilkening
- first_name: Robert
full_name: Saf, Robert
last_name: Saf
- first_name: Sergey M.
full_name: Borisov, Sergey M.
last_name: Borisov
- first_name: Ingo
full_name: Klimant, Ingo
last_name: Klimant
citation:
ama: Aigner D, Freunberger SA, Wilkening M, Saf R, Borisov SM, Klimant I. Enhancing
photoinduced electron transfer efficiency of fluorescent pH-probes with halogenated
phenols. Analytical Chemistry. 2014;86(18):9293-9300. doi:10.1021/ac502513g
apa: Aigner, D., Freunberger, S. A., Wilkening, M., Saf, R., Borisov, S. M., &
Klimant, I. (2014). Enhancing photoinduced electron transfer efficiency of fluorescent
pH-probes with halogenated phenols. Analytical Chemistry. ACS. https://doi.org/10.1021/ac502513g
chicago: Aigner, Daniel, Stefan Alexander Freunberger, Martin Wilkening, Robert
Saf, Sergey M. Borisov, and Ingo Klimant. “Enhancing Photoinduced Electron Transfer
Efficiency of Fluorescent PH-Probes with Halogenated Phenols.” Analytical Chemistry.
ACS, 2014. https://doi.org/10.1021/ac502513g.
ieee: D. Aigner, S. A. Freunberger, M. Wilkening, R. Saf, S. M. Borisov, and I.
Klimant, “Enhancing photoinduced electron transfer efficiency of fluorescent pH-probes
with halogenated phenols,” Analytical Chemistry, vol. 86, no. 18. ACS,
pp. 9293–9300, 2014.
ista: Aigner D, Freunberger SA, Wilkening M, Saf R, Borisov SM, Klimant I. 2014.
Enhancing photoinduced electron transfer efficiency of fluorescent pH-probes with
halogenated phenols. Analytical Chemistry. 86(18), 9293–9300.
mla: Aigner, Daniel, et al. “Enhancing Photoinduced Electron Transfer Efficiency
of Fluorescent PH-Probes with Halogenated Phenols.” Analytical Chemistry,
vol. 86, no. 18, ACS, 2014, pp. 9293–300, doi:10.1021/ac502513g.
short: D. Aigner, S.A. Freunberger, M. Wilkening, R. Saf, S.M. Borisov, I. Klimant,
Analytical Chemistry 86 (2014) 9293–9300.
date_created: 2020-01-15T12:17:17Z
date_published: 2014-08-14T00:00:00Z
date_updated: 2021-01-12T08:12:53Z
day: '14'
doi: 10.1021/ac502513g
extern: '1'
intvolume: ' 86'
issue: '18'
language:
- iso: eng
month: '08'
oa_version: None
page: 9293-9300
publication: Analytical Chemistry
publication_identifier:
issn:
- 0003-2700
- 1520-6882
publication_status: published
publisher: ACS
quality_controlled: '1'
status: public
title: Enhancing photoinduced electron transfer efficiency of fluorescent pH-probes
with halogenated phenols
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 86
year: '2014'
...