---
_id: '2045'
abstract:
- lang: eng
text: 'We introduce and study a new notion of enhanced chosen-ciphertext security
(ECCA) for public-key encryption. Loosely speaking, in the ECCA security experiment,
the decryption oracle provided to the adversary is augmented to return not only
the output of the decryption algorithm on a queried ciphertext but also of a randomness-recovery
algorithm associated to the scheme. Our results mainly concern the case where
the randomness-recovery algorithm is efficient. We provide constructions of ECCA-secure
encryption from adaptive trapdoor functions as defined by Kiltz et al. (EUROCRYPT
2010), resulting in ECCA encryption from standard number-theoretic assumptions.
We then give two applications of ECCA-secure encryption: (1) We use it as a unifying
concept in showing equivalence of adaptive trapdoor functions and tag-based adaptive
trapdoor functions, resolving an open question of Kiltz et al. (2) We show that
ECCA-secure encryption can be used to securely realize an approach to public-key
encryption with non-interactive opening (PKENO) originally suggested by Damgård
and Thorbek (EUROCRYPT 2007), resulting in new and practical PKENO schemes quite
different from those in prior work. Our results demonstrate that ECCA security
is of both practical and theoretical interest.'
acknowledgement: The second author was supported by EPSRC grant EP/H043454/1.
alternative_title:
- LNCS
author:
- first_name: Dana
full_name: Dachman Soled, Dana
last_name: Dachman Soled
- first_name: Georg
full_name: Fuchsbauer, Georg
id: 46B4C3EE-F248-11E8-B48F-1D18A9856A87
last_name: Fuchsbauer
- first_name: Payman
full_name: Mohassel, Payman
last_name: Mohassel
- first_name: Adam
full_name: O’Neill, Adam
last_name: O’Neill
citation:
ama: 'Dachman Soled D, Fuchsbauer G, Mohassel P, O’Neill A. Enhanced chosen-ciphertext
security and applications. In: Krawczyk H, ed. Lecture Notes in Computer Science
(Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes
in Bioinformatics). Vol 8383. Springer; 2014:329-344. doi:10.1007/978-3-642-54631-0_19'
apa: 'Dachman Soled, D., Fuchsbauer, G., Mohassel, P., & O’Neill, A. (2014).
Enhanced chosen-ciphertext security and applications. In H. Krawczyk (Ed.), Lecture
Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics) (Vol. 8383, pp. 329–344). Buenos Aires,
Argentina: Springer. https://doi.org/10.1007/978-3-642-54631-0_19'
chicago: Dachman Soled, Dana, Georg Fuchsbauer, Payman Mohassel, and Adam O’Neill.
“Enhanced Chosen-Ciphertext Security and Applications.” In Lecture Notes in
Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), edited by Hugo Krawczyk, 8383:329–44.
Springer, 2014. https://doi.org/10.1007/978-3-642-54631-0_19.
ieee: D. Dachman Soled, G. Fuchsbauer, P. Mohassel, and A. O’Neill, “Enhanced chosen-ciphertext
security and applications,” in Lecture Notes in Computer Science (including
subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
Buenos Aires, Argentina, 2014, vol. 8383, pp. 329–344.
ista: 'Dachman Soled D, Fuchsbauer G, Mohassel P, O’Neill A. 2014. Enhanced chosen-ciphertext
security and applications. Lecture Notes in Computer Science (including subseries
Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
PKC: Public Key Crypography, LNCS, vol. 8383, 329–344.'
mla: Dachman Soled, Dana, et al. “Enhanced Chosen-Ciphertext Security and Applications.”
Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
Intelligence and Lecture Notes in Bioinformatics), edited by Hugo Krawczyk,
vol. 8383, Springer, 2014, pp. 329–44, doi:10.1007/978-3-642-54631-0_19.
short: D. Dachman Soled, G. Fuchsbauer, P. Mohassel, A. O’Neill, in:, H. Krawczyk
(Ed.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in
Artificial Intelligence and Lecture Notes in Bioinformatics), Springer, 2014,
pp. 329–344.
conference:
end_date: 2014-03-28
location: Buenos Aires, Argentina
name: 'PKC: Public Key Crypography'
start_date: 2014-03-26
date_created: 2018-12-11T11:55:24Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:54:57Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-642-54631-0_19
ec_funded: 1
editor:
- first_name: Hugo
full_name: Krawczyk, Hugo
last_name: Krawczyk
intvolume: ' 8383'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2012/543
month: '01'
oa: 1
oa_version: Submitted Version
page: 329 - 344
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '259668'
name: Provable Security for Physical Cryptography
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Springer
publist_id: '5006'
quality_controlled: '1'
scopus_import: 1
status: public
title: Enhanced chosen-ciphertext security and applications
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8383
year: '2014'
...
---
_id: '2046'
abstract:
- lang: eng
text: 'We introduce policy-based signatures (PBS), where a signer can only sign
messages conforming to some authority-specified policy. The main requirements
are unforgeability and privacy, the latter meaning that signatures not reveal
the policy. PBS offers value along two fronts: (1) On the practical side, they
allow a corporation to control what messages its employees can sign under the
corporate key. (2) On the theoretical side, they unify existing work, capturing
other forms of signatures as special cases or allowing them to be easily built.
Our work focuses on definitions of PBS, proofs that this challenging primitive
is realizable for arbitrary policies, efficient constructions for specific policies,
and a few representative applications.'
acknowledgement: Part of his work was done while at Bristol University, supported
by EPSRC grant EP/H043454/1.
alternative_title:
- LNCS
author:
- first_name: Mihir
full_name: Bellare, Mihir
last_name: Bellare
- first_name: Georg
full_name: Fuchsbauer, Georg
id: 46B4C3EE-F248-11E8-B48F-1D18A9856A87
last_name: Fuchsbauer
citation:
ama: 'Bellare M, Fuchsbauer G. Policy-based signatures. In: Krawczyk H, ed. Lecture
Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics). Vol 8383. Springer; 2014:520-537. doi:10.1007/978-3-642-54631-0_30'
apa: 'Bellare, M., & Fuchsbauer, G. (2014). Policy-based signatures. In H. Krawczyk
(Ed.), Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 8383,
pp. 520–537). Buenos Aires, Argentina: Springer. https://doi.org/10.1007/978-3-642-54631-0_30'
chicago: Bellare, Mihir, and Georg Fuchsbauer. “Policy-Based Signatures.” In Lecture
Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), edited by Hugo Krawczyk, 8383:520–37.
Springer, 2014. https://doi.org/10.1007/978-3-642-54631-0_30.
ieee: M. Bellare and G. Fuchsbauer, “Policy-based signatures,” in Lecture Notes
in Computer Science (including subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), Buenos Aires, Argentina, 2014, vol.
8383, pp. 520–537.
ista: 'Bellare M, Fuchsbauer G. 2014. Policy-based signatures. Lecture Notes in
Computer Science (including subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics). PKC: Public Key Crypography, LNCS, vol.
8383, 520–537.'
mla: Bellare, Mihir, and Georg Fuchsbauer. “Policy-Based Signatures.” Lecture
Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), edited by Hugo Krawczyk, vol. 8383,
Springer, 2014, pp. 520–37, doi:10.1007/978-3-642-54631-0_30.
short: M. Bellare, G. Fuchsbauer, in:, H. Krawczyk (Ed.), Lecture Notes in Computer
Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture
Notes in Bioinformatics), Springer, 2014, pp. 520–537.
conference:
end_date: 2014-05-28
location: Buenos Aires, Argentina
name: 'PKC: Public Key Crypography'
start_date: 2014-05-26
date_created: 2018-12-11T11:55:24Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:54:57Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-642-54631-0_30
ec_funded: 1
editor:
- first_name: Hugo
full_name: Krawczyk, Hugo
last_name: Krawczyk
intvolume: ' 8383'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2013/413
month: '01'
oa: 1
oa_version: Submitted Version
page: 520 - 537
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '259668'
name: Provable Security for Physical Cryptography
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Springer
publist_id: '5005'
quality_controlled: '1'
scopus_import: 1
status: public
title: Policy-based signatures
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8383
year: '2014'
...
---
_id: '2047'
abstract:
- lang: eng
text: Following the publication of an attack on genome-wide association studies
(GWAS) data proposed by Homer et al., considerable attention has been given to
developing methods for releasing GWAS data in a privacy-preserving way. Here,
we develop an end-to-end differentially private method for solving regression
problems with convex penalty functions and selecting the penalty parameters by
cross-validation. In particular, we focus on penalized logistic regression with
elastic-net regularization, a method widely used to in GWAS analyses to identify
disease-causing genes. We show how a differentially private procedure for penalized
logistic regression with elastic-net regularization can be applied to the analysis
of GWAS data and evaluate our method’s performance.
acknowledgement: This research was partially supported by BCS- 0941518 to the Department
of Statistics at Carnegie Mellon University.
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Fei
full_name: Yu, Fei
last_name: Yu
- first_name: Michal
full_name: Rybar, Michal
id: 2B3E3DE8-F248-11E8-B48F-1D18A9856A87
last_name: Rybar
- first_name: Caroline
full_name: Uhler, Caroline
id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
last_name: Uhler
orcid: 0000-0002-7008-0216
- first_name: Stephen
full_name: Fienberg, Stephen
last_name: Fienberg
citation:
ama: 'Yu F, Rybar M, Uhler C, Fienberg S. Differentially-private logistic regression
for detecting multiple-SNP association in GWAS databases. In: Domingo Ferrer J,
ed. Lecture Notes in Computer Science (Including Subseries Lecture Notes in
Artificial Intelligence and Lecture Notes in Bioinformatics). Vol 8744. Springer;
2014:170-184. doi:10.1007/978-3-319-11257-2_14'
apa: 'Yu, F., Rybar, M., Uhler, C., & Fienberg, S. (2014). Differentially-private
logistic regression for detecting multiple-SNP association in GWAS databases.
In J. Domingo Ferrer (Ed.), Lecture Notes in Computer Science (including subseries
Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
(Vol. 8744, pp. 170–184). Ibiza, Spain: Springer. https://doi.org/10.1007/978-3-319-11257-2_14'
chicago: Yu, Fei, Michal Rybar, Caroline Uhler, and Stephen Fienberg. “Differentially-Private
Logistic Regression for Detecting Multiple-SNP Association in GWAS Databases.”
In Lecture Notes in Computer Science (Including Subseries Lecture Notes in
Artificial Intelligence and Lecture Notes in Bioinformatics), edited by Josep
Domingo Ferrer, 8744:170–84. Springer, 2014. https://doi.org/10.1007/978-3-319-11257-2_14.
ieee: F. Yu, M. Rybar, C. Uhler, and S. Fienberg, “Differentially-private logistic
regression for detecting multiple-SNP association in GWAS databases,” in Lecture
Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), Ibiza, Spain, 2014, vol. 8744, pp. 170–184.
ista: 'Yu F, Rybar M, Uhler C, Fienberg S. 2014. Differentially-private logistic
regression for detecting multiple-SNP association in GWAS databases. Lecture Notes
in Computer Science (including subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics). PSD: Privacy in Statistical Databases, LNCS,
vol. 8744, 170–184.'
mla: Yu, Fei, et al. “Differentially-Private Logistic Regression for Detecting Multiple-SNP
Association in GWAS Databases.” Lecture Notes in Computer Science (Including
Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
edited by Josep Domingo Ferrer, vol. 8744, Springer, 2014, pp. 170–84, doi:10.1007/978-3-319-11257-2_14.
short: F. Yu, M. Rybar, C. Uhler, S. Fienberg, in:, J. Domingo Ferrer (Ed.), Lecture
Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), Springer, 2014, pp. 170–184.
conference:
end_date: 2014-09-19
location: Ibiza, Spain
name: 'PSD: Privacy in Statistical Databases'
start_date: 2014-09-17
date_created: 2018-12-11T11:55:24Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:54:57Z
day: '01'
department:
- _id: KrPi
- _id: CaUh
doi: 10.1007/978-3-319-11257-2_14
editor:
- first_name: Josep
full_name: Domingo Ferrer, Josep
last_name: Domingo Ferrer
external_id:
arxiv:
- '1407.8067'
intvolume: ' 8744'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1407.8067
month: '01'
oa: 1
oa_version: Submitted Version
page: 170 - 184
project:
- _id: 25636330-B435-11E9-9278-68D0E5697425
grant_number: 11-NSF-1070
name: ROOTS Genome-wide Analysis of Root Traits
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Springer
publist_id: '5004'
quality_controlled: '1'
scopus_import: 1
status: public
title: Differentially-private logistic regression for detecting multiple-SNP association
in GWAS databases
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8744
year: '2014'
...
---
_id: '2050'
abstract:
- lang: eng
text: The flow instability and further transition to turbulence in a toroidal pipe
(torus) with curvature ratio (tube-to-coiling diameter) 0.049 is investigated
experimentally. The flow inside the toroidal pipe is driven by a steel sphere
fitted to the inner pipe diameter. The sphere is moved with constant azimuthal
velocity from outside the torus by a moving magnet. The experiment is designed
to investigate curved pipe flow by optical measurement techniques. Using stereoscopic
particle image velocimetry, laser Doppler velocimetry and pressure drop measurements,
the flow is measured for Reynolds numbers ranging from 1000 to 15 000. Time- and
space-resolved velocity fields are obtained and analysed. The steady axisymmetric
basic flow is strongly influenced by centrifugal effects. On an increase of the
Reynolds number we find a sequence of bifurcations. For Re=4075±2% a supercritical
bifurcation to an oscillatory flow is found in which waves travel in the streamwise
direction with a phase velocity slightly faster than the mean flow. The oscillatory
flow is superseded by a presumably quasi-periodic flow at a further increase of
the Reynolds number before turbulence sets in. The results are found to be compatible,
in general, with earlier experimental and numerical investigations on transition
to turbulence in helical and curved pipes. However, important aspects of the bifurcation
scenario differ considerably.
article_processing_charge: No
arxiv: 1
author:
- first_name: Jakob
full_name: Kühnen, Jakob
id: 3A47AE32-F248-11E8-B48F-1D18A9856A87
last_name: Kühnen
orcid: 0000-0003-4312-0179
- first_name: Markus
full_name: Holzner, Markus
last_name: Holzner
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
- first_name: Hendrik
full_name: Kuhlmann, Hendrik
last_name: Kuhlmann
citation:
ama: Kühnen J, Holzner M, Hof B, Kuhlmann H. Experimental investigation of transitional
flow in a toroidal pipe. Journal of Fluid Mechanics. 2014;738:463-491.
doi:10.1017/jfm.2013.603
apa: Kühnen, J., Holzner, M., Hof, B., & Kuhlmann, H. (2014). Experimental investigation
of transitional flow in a toroidal pipe. Journal of Fluid Mechanics. Cambridge
University Press. https://doi.org/10.1017/jfm.2013.603
chicago: Kühnen, Jakob, Markus Holzner, Björn Hof, and Hendrik Kuhlmann. “Experimental
Investigation of Transitional Flow in a Toroidal Pipe.” Journal of Fluid Mechanics.
Cambridge University Press, 2014. https://doi.org/10.1017/jfm.2013.603.
ieee: J. Kühnen, M. Holzner, B. Hof, and H. Kuhlmann, “Experimental investigation
of transitional flow in a toroidal pipe,” Journal of Fluid Mechanics, vol.
738. Cambridge University Press, pp. 463–491, 2014.
ista: Kühnen J, Holzner M, Hof B, Kuhlmann H. 2014. Experimental investigation of
transitional flow in a toroidal pipe. Journal of Fluid Mechanics. 738, 463–491.
mla: Kühnen, Jakob, et al. “Experimental Investigation of Transitional Flow in a
Toroidal Pipe.” Journal of Fluid Mechanics, vol. 738, Cambridge University
Press, 2014, pp. 463–91, doi:10.1017/jfm.2013.603.
short: J. Kühnen, M. Holzner, B. Hof, H. Kuhlmann, Journal of Fluid Mechanics 738
(2014) 463–491.
date_created: 2018-12-11T11:55:25Z
date_published: 2014-01-10T00:00:00Z
date_updated: 2021-01-12T06:54:59Z
day: '10'
department:
- _id: BjHo
doi: 10.1017/jfm.2013.603
external_id:
arxiv:
- '1508.06546'
intvolume: ' 738'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1508.06546
month: '01'
oa: 1
oa_version: Submitted Version
page: 463 - 491
publication: Journal of Fluid Mechanics
publication_status: published
publisher: Cambridge University Press
publist_id: '5001'
quality_controlled: '1'
scopus_import: 1
status: public
title: Experimental investigation of transitional flow in a toroidal pipe
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 738
year: '2014'
...
---
_id: '2051'
abstract:
- lang: eng
text: We show that the usual score function for conditional Markov networks can
be written as the expectation over the scores of their spanning trees. We also
show that a small random sample of these output trees can attain a significant
fraction of the margin obtained by the complete graph and we provide conditions
under which we can perform tractable inference. The experimental results confirm
that practical learning is scalable to realistic datasets using this approach.
author:
- first_name: Mario
full_name: Marchand, Mario
last_name: Marchand
- first_name: Su
full_name: Hongyu, Su
last_name: Hongyu
- first_name: Emilie
full_name: Emilie Morvant
id: 4BAC2A72-F248-11E8-B48F-1D18A9856A87
last_name: Morvant
orcid: 0000-0002-8301-7240
- first_name: Juho
full_name: Rousu, Juho
last_name: Rousu
- first_name: John
full_name: Shawe-Taylor, John
last_name: Shawe Taylor
citation:
ama: 'Marchand M, Hongyu S, Morvant E, Rousu J, Shawe Taylor J. Multilabel structured
output learning with random spanning trees of max-margin Markov networks. In:
Neural Information Processing Systems; 2014.'
apa: 'Marchand, M., Hongyu, S., Morvant, E., Rousu, J., & Shawe Taylor, J. (2014).
Multilabel structured output learning with random spanning trees of max-margin
Markov networks. Presented at the NIPS: Neural Information Processing Systems,
Neural Information Processing Systems.'
chicago: Marchand, Mario, Su Hongyu, Emilie Morvant, Juho Rousu, and John Shawe
Taylor. “Multilabel Structured Output Learning with Random Spanning Trees of Max-Margin
Markov Networks.” Neural Information Processing Systems, 2014.
ieee: 'M. Marchand, S. Hongyu, E. Morvant, J. Rousu, and J. Shawe Taylor, “Multilabel
structured output learning with random spanning trees of max-margin Markov networks,”
presented at the NIPS: Neural Information Processing Systems, 2014.'
ista: 'Marchand M, Hongyu S, Morvant E, Rousu J, Shawe Taylor J. 2014. Multilabel
structured output learning with random spanning trees of max-margin Markov networks.
NIPS: Neural Information Processing Systems.'
mla: Marchand, Mario, et al. Multilabel Structured Output Learning with Random
Spanning Trees of Max-Margin Markov Networks. Neural Information Processing
Systems, 2014.
short: M. Marchand, S. Hongyu, E. Morvant, J. Rousu, J. Shawe Taylor, in:, Neural
Information Processing Systems, 2014.
conference:
name: 'NIPS: Neural Information Processing Systems'
date_created: 2018-12-11T11:55:26Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:54:59Z
day: '01'
extern: 1
main_file_link:
- open_access: '1'
url: https://hal.archives-ouvertes.fr/hal-01065586
month: '01'
oa: 1
publication_status: published
publisher: Neural Information Processing Systems
publist_id: '4996'
quality_controlled: 0
status: public
title: Multilabel structured output learning with random spanning trees of max-margin
Markov networks
type: conference
year: '2014'
...
---
_id: '2052'
abstract:
- lang: eng
text: A standard technique for solving the parameterized model checking problem
is to reduce it to the classic model checking problem of finitely many finite-state
systems. This work considers some of the theoretical power and limitations of
this technique. We focus on concurrent systems in which processes communicate
via pairwise rendezvous, as well as the special cases of disjunctive guards and
token passing; specifications are expressed in indexed temporal logic without
the next operator; and the underlying network topologies are generated by suitable
Monadic Second Order Logic formulas and graph operations. First, we settle the
exact computational complexity of the parameterized model checking problem for
some of our concurrent systems, and establish new decidability results for others.
Second, we consider the cases that model checking the parameterized system can
be reduced to model checking some fixed number of processes, the number is known
as a cutoff. We provide many cases for when such cutoffs can be computed, establish
lower bounds on the size of such cutoffs, and identify cases where no cutoff exists.
Third, we consider cases for which the parameterized system is equivalent to a
single finite-state system (more precisely a Büchi word automaton), and establish
tight bounds on the sizes of such automata.
acknowledgement: The second, third, fourth and fifth authors were supported by the
Austrian National Research Network S11403-N23 (RiSE) of the Austrian Science Fund
(FWF) and by the Vienna Science and Technology Fund (WWTF) through grants PROSEED,
ICT12-059, and VRG11-005.
alternative_title:
- LNCS
author:
- first_name: Benjamin
full_name: Aminof, Benjamin
id: 4A55BD00-F248-11E8-B48F-1D18A9856A87
last_name: Aminof
- first_name: Tomer
full_name: Kotek, Tomer
last_name: Kotek
- first_name: Sacha
full_name: Rubin, Sacha
last_name: Rubin
- first_name: Francesco
full_name: Spegni, Francesco
last_name: Spegni
- first_name: Helmut
full_name: Veith, Helmut
last_name: Veith
citation:
ama: 'Aminof B, Kotek T, Rubin S, Spegni F, Veith H. Parameterized model checking
of rendezvous systems. In: Baldan P, Gorla D, eds. Lecture Notes in Computer
Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture
Notes in Bioinformatics). Vol 8704. Schloss Dagstuhl - Leibniz-Zentrum für
Informatik; 2014:109-124. doi:10.1007/978-3-662-44584-6_9'
apa: 'Aminof, B., Kotek, T., Rubin, S., Spegni, F., & Veith, H. (2014). Parameterized
model checking of rendezvous systems. In P. Baldan & D. Gorla (Eds.), Lecture
Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics) (Vol. 8704, pp. 109–124). Rome, Italy:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/978-3-662-44584-6_9'
chicago: Aminof, Benjamin, Tomer Kotek, Sacha Rubin, Francesco Spegni, and Helmut
Veith. “Parameterized Model Checking of Rendezvous Systems.” In Lecture Notes
in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), edited by Paolo Baldan and Daniele Gorla,
8704:109–24. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014. https://doi.org/10.1007/978-3-662-44584-6_9.
ieee: B. Aminof, T. Kotek, S. Rubin, F. Spegni, and H. Veith, “Parameterized model
checking of rendezvous systems,” in Lecture Notes in Computer Science (including
subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
Rome, Italy, 2014, vol. 8704, pp. 109–124.
ista: 'Aminof B, Kotek T, Rubin S, Spegni F, Veith H. 2014. Parameterized model
checking of rendezvous systems. Lecture Notes in Computer Science (including subseries
Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
CONCUR: Concurrency Theory, LNCS, vol. 8704, 109–124.'
mla: Aminof, Benjamin, et al. “Parameterized Model Checking of Rendezvous Systems.”
Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
Intelligence and Lecture Notes in Bioinformatics), edited by Paolo Baldan
and Daniele Gorla, vol. 8704, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2014, pp. 109–24, doi:10.1007/978-3-662-44584-6_9.
short: B. Aminof, T. Kotek, S. Rubin, F. Spegni, H. Veith, in:, P. Baldan, D. Gorla
(Eds.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in
Artificial Intelligence and Lecture Notes in Bioinformatics), Schloss Dagstuhl
- Leibniz-Zentrum für Informatik, 2014, pp. 109–124.
conference:
end_date: 2014-09-05
location: Rome, Italy
name: 'CONCUR: Concurrency Theory'
start_date: 2014-09-02
date_created: 2018-12-11T11:55:26Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T06:54:59Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-662-44584-6_9
editor:
- first_name: Paolo
full_name: Baldan, Paolo
last_name: Baldan
- first_name: Daniele
full_name: Gorla, Daniele
last_name: Gorla
intvolume: ' 8704'
language:
- iso: eng
month: '09'
oa_version: None
page: 109 - 124
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4994'
quality_controlled: '1'
status: public
title: Parameterized model checking of rendezvous systems
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8704
year: '2014'
...
---
_id: '2053'
abstract:
- lang: eng
text: In contrast to the usual understanding of probabilistic systems as stochastic
processes, recently these systems have also been regarded as transformers of probabilities.
In this paper, we give a natural definition of strong bisimulation for probabilistic
systems corresponding to this view that treats probability distributions as first-class
citizens. Our definition applies in the same way to discrete systems as well as
to systems with uncountable state and action spaces. Several examples demonstrate
that our definition refines the understanding of behavioural equivalences of probabilistic
systems. In particular, it solves a longstanding open problem concerning the representation
of memoryless continuous time by memoryfull continuous time. Finally, we give
algorithms for computing this bisimulation not only for finite but also for classes
of uncountably infinite systems.
acknowledgement: This work is supported by the EU 7th Framework Programme under grant
agreements 295261 (MEALS) and 318490 (SENSATION), Czech Science Foundation under
grant agreement P202/12/G061, the DFG Transregional Collaborative Research Centre
SFB/TR 14 AVACS, and by the CAS/SAFEA International Partnership Program for Creative
Research Teams.
alternative_title:
- LNCS
author:
- first_name: Holger
full_name: Hermanns, Holger
last_name: Hermanns
- first_name: Jan
full_name: Krčál, Jan
last_name: Krčál
- first_name: Jan
full_name: Kretinsky, Jan
id: 44CEF464-F248-11E8-B48F-1D18A9856A87
last_name: Kretinsky
orcid: 0000-0002-8122-2881
citation:
ama: 'Hermanns H, Krčál J, Kretinsky J. Probabilistic bisimulation: Naturally on
distributions. In: Baldan P, Gorla D, eds. Lecture Notes in Computer Science
(Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes
in Bioinformatics). Vol 8704. Schloss Dagstuhl - Leibniz-Zentrum für Informatik;
2014:249-265. doi:10.1007/978-3-662-44584-6_18'
apa: 'Hermanns, H., Krčál, J., & Kretinsky, J. (2014). Probabilistic bisimulation:
Naturally on distributions. In P. Baldan & D. Gorla (Eds.), Lecture Notes
in Computer Science (including subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics) (Vol. 8704, pp. 249–265). Rome, Italy:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.1007/978-3-662-44584-6_18'
chicago: 'Hermanns, Holger, Jan Krčál, and Jan Kretinsky. “Probabilistic Bisimulation:
Naturally on Distributions.” In Lecture Notes in Computer Science (Including
Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
edited by Paolo Baldan and Daniele Gorla, 8704:249–65. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2014. https://doi.org/10.1007/978-3-662-44584-6_18.'
ieee: 'H. Hermanns, J. Krčál, and J. Kretinsky, “Probabilistic bisimulation: Naturally
on distributions,” in Lecture Notes in Computer Science (including subseries
Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
Rome, Italy, 2014, vol. 8704, pp. 249–265.'
ista: 'Hermanns H, Krčál J, Kretinsky J. 2014. Probabilistic bisimulation: Naturally
on distributions. Lecture Notes in Computer Science (including subseries Lecture
Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). CONCUR:
Concurrency Theory, LNCS, vol. 8704, 249–265.'
mla: 'Hermanns, Holger, et al. “Probabilistic Bisimulation: Naturally on Distributions.”
Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
Intelligence and Lecture Notes in Bioinformatics), edited by Paolo Baldan
and Daniele Gorla, vol. 8704, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2014, pp. 249–65, doi:10.1007/978-3-662-44584-6_18.'
short: H. Hermanns, J. Krčál, J. Kretinsky, in:, P. Baldan, D. Gorla (Eds.), Lecture
Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence
and Lecture Notes in Bioinformatics), Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2014, pp. 249–265.
conference:
end_date: 2014-09-05
location: Rome, Italy
name: 'CONCUR: Concurrency Theory'
start_date: 2014-09-02
date_created: 2018-12-11T11:55:27Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2021-01-12T06:55:00Z
day: '01'
department:
- _id: ToHe
- _id: KrCh
doi: 10.1007/978-3-662-44584-6_18
ec_funded: 1
editor:
- first_name: Paolo
full_name: Baldan, Paolo
last_name: Baldan
- first_name: Daniele
full_name: Gorla, Daniele
last_name: Gorla
intvolume: ' 8704'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1404.5084
month: '09'
oa: 1
oa_version: Submitted Version
page: 249 - 265
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11402-N23
name: Moderne Concurrency Paradigms
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4993'
status: public
title: 'Probabilistic bisimulation: Naturally on distributions'
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8704
year: '2014'
...
---
_id: '2054'
abstract:
- lang: eng
text: 'We study two-player concurrent games on finite-state graphs played for an
infinite number of rounds, where in each round, the two players (player 1 and
player 2) choose their moves independently and simultaneously; the current state
and the two moves determine the successor state. The objectives are ω-regular
winning conditions specified as parity objectives. We consider the qualitative
analysis problems: the computation of the almost-sure and limit-sure winning set
of states, where player 1 can ensure to win with probability 1 and with probability
arbitrarily close to 1, respectively. In general the almost-sure and limit-sure
winning strategies require both infinite-memory as well as infinite-precision
(to describe probabilities). While the qualitative analysis problem for concurrent
parity games with infinite-memory, infinite-precision randomized strategies was
studied before, we study the bounded-rationality problem for qualitative analysis
of concurrent parity games, where the strategy set for player 1 is restricted
to bounded-resource strategies. In terms of precision, strategies can be deterministic,
uniform, finite-precision, or infinite-precision; and in terms of memory, strategies
can be memoryless, finite-memory, or infinite-memory. We present a precise and
complete characterization of the qualitative winning sets for all combinations
of classes of strategies. In particular, we show that uniform memoryless strategies
are as powerful as finite-precision infinite-memory strategies, and infinite-precision
memoryless strategies are as powerful as infinite-precision finite-memory strategies.
We show that the winning sets can be computed in (n2d+3) time, where n is the
size of the game structure and 2d is the number of priorities (or colors), and
our algorithms are symbolic. The membership problem of whether a state belongs
to a winning set can be decided in NP ∩ coNP. Our symbolic algorithms are based
on a characterization of the winning sets as μ-calculus formulas, however, our
μ-calculus formulas are crucially different from the ones for concurrent parity
games (without bounded rationality); and our memoryless witness strategy constructions
are significantly different from the infinite-memory witness strategy constructions
for concurrent parity games.'
alternative_title:
- LNCS
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
citation:
ama: 'Chatterjee K. Qualitative concurrent parity games: Bounded rationality. In:
Baldan P, Gorla D, eds. Lecture Notes in Computer Science (Including Subseries
Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
Vol 8704. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2014:544-559. doi:10.1007/978-3-662-44584-6_37'
apa: 'Chatterjee, K. (2014). Qualitative concurrent parity games: Bounded rationality.
In P. Baldan & D. Gorla (Eds.), Lecture Notes in Computer Science (including
subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
(Vol. 8704, pp. 544–559). Rome, Italy: Schloss Dagstuhl - Leibniz-Zentrum für
Informatik. https://doi.org/10.1007/978-3-662-44584-6_37'
chicago: 'Chatterjee, Krishnendu. “Qualitative Concurrent Parity Games: Bounded
Rationality.” In Lecture Notes in Computer Science (Including Subseries Lecture
Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), edited
by Paolo Baldan and Daniele Gorla, 8704:544–59. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2014. https://doi.org/10.1007/978-3-662-44584-6_37.'
ieee: 'K. Chatterjee, “Qualitative concurrent parity games: Bounded rationality,”
in Lecture Notes in Computer Science (including subseries Lecture Notes in
Artificial Intelligence and Lecture Notes in Bioinformatics), Rome, Italy,
2014, vol. 8704, pp. 544–559.'
ista: 'Chatterjee K. 2014. Qualitative concurrent parity games: Bounded rationality.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial
Intelligence and Lecture Notes in Bioinformatics). CONCUR: Concurrency Theory,
LNCS, vol. 8704, 544–559.'
mla: 'Chatterjee, Krishnendu. “Qualitative Concurrent Parity Games: Bounded Rationality.”
Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
Intelligence and Lecture Notes in Bioinformatics), edited by Paolo Baldan
and Daniele Gorla, vol. 8704, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2014, pp. 544–59, doi:10.1007/978-3-662-44584-6_37.'
short: K. Chatterjee, in:, P. Baldan, D. Gorla (Eds.), Lecture Notes in Computer
Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture
Notes in Bioinformatics), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014,
pp. 544–559.
conference:
end_date: 2014-09-05
location: Rome, Italy
name: 'CONCUR: Concurrency Theory'
start_date: 2014-09-02
date_created: 2018-12-11T11:55:27Z
date_published: 2014-09-01T00:00:00Z
date_updated: 2023-02-23T11:23:36Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/978-3-662-44584-6_37
ec_funded: 1
editor:
- first_name: Paolo
full_name: Baldan, Paolo
last_name: Baldan
- first_name: Daniele
full_name: Gorla, Daniele
last_name: Gorla
intvolume: ' 8704'
language:
- iso: eng
month: '09'
oa_version: None
page: 544 - 559
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '4992'
quality_controlled: '1'
related_material:
record:
- id: '3354'
relation: earlier_version
status: public
status: public
title: 'Qualitative concurrent parity games: Bounded rationality'
type: conference
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 8704
year: '2014'
...
---
_id: '2056'
abstract:
- lang: eng
text: 'We consider a continuous-time Markov chain (CTMC) whose state space is partitioned
into aggregates, and each aggregate is assigned a probability measure. A sufficient
condition for defining a CTMC over the aggregates is presented as a variant of
weak lumpability, which also characterizes that the measure over the original
process can be recovered from that of the aggregated one. We show how the applicability
of de-aggregation depends on the initial distribution. The application section
is devoted to illustrate how the developed theory aids in reducing CTMC models
of biochemical systems particularly in connection to protein-protein interactions.
We assume that the model is written by a biologist in form of site-graph-rewrite
rules. Site-graph-rewrite rules compactly express that, often, only a local context
of a protein (instead of a full molecular species) needs to be in a certain configuration
in order to trigger a reaction event. This observation leads to suitable aggregate
Markov chains with smaller state spaces, thereby providing sufficient reduction
in computational complexity. This is further exemplified in two case studies:
simple unbounded polymerization and early EGFR/insulin crosstalk.'
acknowledgement: T. Petrov is supported by SystemsX.ch—the Swiss Inititative for Systems
Biology.
author:
- first_name: Arnab
full_name: Ganguly, Arnab
last_name: Ganguly
- first_name: Tatjana
full_name: Petrov, Tatjana
id: 3D5811FC-F248-11E8-B48F-1D18A9856A87
last_name: Petrov
orcid: 0000-0002-9041-0905
- first_name: Heinz
full_name: Koeppl, Heinz
last_name: Koeppl
citation:
ama: Ganguly A, Petrov T, Koeppl H. Markov chain aggregation and its applications
to combinatorial reaction networks. Journal of Mathematical Biology. 2014;69(3):767-797.
doi:10.1007/s00285-013-0738-7
apa: Ganguly, A., Petrov, T., & Koeppl, H. (2014). Markov chain aggregation
and its applications to combinatorial reaction networks. Journal of Mathematical
Biology. Springer. https://doi.org/10.1007/s00285-013-0738-7
chicago: Ganguly, Arnab, Tatjana Petrov, and Heinz Koeppl. “Markov Chain Aggregation
and Its Applications to Combinatorial Reaction Networks.” Journal of Mathematical
Biology. Springer, 2014. https://doi.org/10.1007/s00285-013-0738-7.
ieee: A. Ganguly, T. Petrov, and H. Koeppl, “Markov chain aggregation and its applications
to combinatorial reaction networks,” Journal of Mathematical Biology, vol.
69, no. 3. Springer, pp. 767–797, 2014.
ista: Ganguly A, Petrov T, Koeppl H. 2014. Markov chain aggregation and its applications
to combinatorial reaction networks. Journal of Mathematical Biology. 69(3), 767–797.
mla: Ganguly, Arnab, et al. “Markov Chain Aggregation and Its Applications to Combinatorial
Reaction Networks.” Journal of Mathematical Biology, vol. 69, no. 3, Springer,
2014, pp. 767–97, doi:10.1007/s00285-013-0738-7.
short: A. Ganguly, T. Petrov, H. Koeppl, Journal of Mathematical Biology 69 (2014)
767–797.
date_created: 2018-12-11T11:55:28Z
date_published: 2014-11-20T00:00:00Z
date_updated: 2021-01-12T06:55:01Z
day: '20'
department:
- _id: CaGu
- _id: ToHe
doi: 10.1007/s00285-013-0738-7
intvolume: ' 69'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1303.4532
month: '11'
oa: 1
oa_version: Submitted Version
page: 767 - 797
publication: Journal of Mathematical Biology
publication_status: published
publisher: Springer
publist_id: '4990'
quality_controlled: '1'
scopus_import: 1
status: public
title: Markov chain aggregation and its applications to combinatorial reaction networks
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 69
year: '2014'
...
---
_id: '2057'
abstract:
- lang: eng
text: 'In the past few years, a lot of attention has been devoted to multimedia
indexing by fusing multimodal informations. Two kinds of fusion schemes are generally
considered: The early fusion and the late fusion. We focus on late classifier
fusion, where one combines the scores of each modality at the decision level.
To tackle this problem, we investigate a recent and elegant well-founded quadratic
program named MinCq coming from the machine learning PAC-Bayesian theory. MinCq
looks for the weighted combination, over a set of real-valued functions seen as
voters, leading to the lowest misclassification rate, while maximizing the voters’
diversity. We propose an extension of MinCq tailored to multimedia indexing. Our
method is based on an order-preserving pairwise loss adapted to ranking that allows
us to improve Mean Averaged Precision measure while taking into account the diversity
of the voters that we want to fuse. We provide evidence that this method is naturally
adapted to late fusion procedures and confirm the good behavior of our approach
on the challenging PASCAL VOC’07 benchmark.'
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Emilie
full_name: Morvant, Emilie
id: 4BAC2A72-F248-11E8-B48F-1D18A9856A87
last_name: Morvant
orcid: 0000-0002-8301-7240
- first_name: Amaury
full_name: Habrard, Amaury
last_name: Habrard
- first_name: Stéphane
full_name: Ayache, Stéphane
last_name: Ayache
citation:
ama: 'Morvant E, Habrard A, Ayache S. Majority vote of diverse classifiers for late
fusion. In: Lecture Notes in Computer Science (Including Subseries Lecture
Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol
8621. Springer; 2014:153-162. doi:10.1007/978-3-662-44415-3_16'
apa: 'Morvant, E., Habrard, A., & Ayache, S. (2014). Majority vote of diverse
classifiers for late fusion. In Lecture Notes in Computer Science (including
subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
(Vol. 8621, pp. 153–162). Joensuu, Finland: Springer. https://doi.org/10.1007/978-3-662-44415-3_16'
chicago: Morvant, Emilie, Amaury Habrard, and Stéphane Ayache. “Majority Vote of
Diverse Classifiers for Late Fusion.” In Lecture Notes in Computer Science
(Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes
in Bioinformatics), 8621:153–62. Springer, 2014. https://doi.org/10.1007/978-3-662-44415-3_16.
ieee: E. Morvant, A. Habrard, and S. Ayache, “Majority vote of diverse classifiers
for late fusion,” in Lecture Notes in Computer Science (including subseries
Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
Joensuu, Finland, 2014, vol. 8621, pp. 153–162.
ista: 'Morvant E, Habrard A, Ayache S. 2014. Majority vote of diverse classifiers
for late fusion. Lecture Notes in Computer Science (including subseries Lecture
Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). IAPR: International
Workshop on Structural, Syntactic, and Statistical Pattern Recognition, LNCS,
vol. 8621, 153–162.'
mla: Morvant, Emilie, et al. “Majority Vote of Diverse Classifiers for Late Fusion.”
Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial
Intelligence and Lecture Notes in Bioinformatics), vol. 8621, Springer, 2014,
pp. 153–62, doi:10.1007/978-3-662-44415-3_16.
short: E. Morvant, A. Habrard, S. Ayache, in:, Lecture Notes in Computer Science
(Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes
in Bioinformatics), Springer, 2014, pp. 153–162.
conference:
end_date: 2014-08-22
location: Joensuu, Finland
name: 'IAPR: International Workshop on Structural, Syntactic, and Statistical Pattern
Recognition'
start_date: 2014-08-20
date_created: 2018-12-11T11:55:28Z
date_published: 2014-01-01T00:00:00Z
date_updated: 2021-01-12T06:55:01Z
day: '01'
department:
- _id: ChLa
doi: 10.1007/978-3-662-44415-3_16
ec_funded: 1
external_id:
arxiv:
- '1404.7796'
intvolume: ' 8621'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1404.7796
month: '01'
oa: 1
oa_version: Preprint
page: 153 - 162
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '308036'
name: Lifelong Learning of Visual Scene Understanding
publication: Lecture Notes in Computer Science (including subseries Lecture Notes
in Artificial Intelligence and Lecture Notes in Bioinformatics)
publication_status: published
publisher: Springer
publist_id: '4989'
quality_controlled: '1'
scopus_import: 1
status: public
title: Majority vote of diverse classifiers for late fusion
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8621
year: '2014'
...
---
_id: '2058'
abstract:
- lang: eng
text: We present a method for smoothly blending between existing liquid animations.
We introduce a semi-automatic method for matching two existing liquid animations,
which we use to create new fluid motion that plausibly interpolates the input.
Our contributions include a new space-time non-rigid iterative closest point algorithm
that incorporates user guidance, a subsampling technique for efficient registration
of meshes with millions of vertices, and a fast surface extraction algorithm that
produces 3D triangle meshes from a 4D space-time surface. Our technique can be
used to instantly create hundreds of new simulations, or to interactively explore
complex parameter spaces. Our method is guaranteed to produce output that does
not deviate from the input animations, and it generalizes to multiple dimensions.
Because our method runs at interactive rates after the initial precomputation
step, it has potential applications in games and training simulations.
article_number: '137'
article_processing_charge: No
author:
- first_name: Karthik
full_name: Raveendran, Karthik
last_name: Raveendran
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
- first_name: Nils
full_name: Thuerey, Nils
last_name: Thuerey
- first_name: Greg
full_name: Türk, Greg
last_name: Türk
citation:
ama: 'Raveendran K, Wojtan C, Thuerey N, Türk G. Blending liquids. In: ACM Transactions
on Graphics. Vol 33. ACM; 2014. doi:10.1145/2601097.2601126'
apa: 'Raveendran, K., Wojtan, C., Thuerey, N., & Türk, G. (2014). Blending liquids.
In ACM Transactions on Graphics (Vol. 33). Vancouver, Canada: ACM. https://doi.org/10.1145/2601097.2601126'
chicago: Raveendran, Karthik, Chris Wojtan, Nils Thuerey, and Greg Türk. “Blending
Liquids.” In ACM Transactions on Graphics, Vol. 33. ACM, 2014. https://doi.org/10.1145/2601097.2601126.
ieee: K. Raveendran, C. Wojtan, N. Thuerey, and G. Türk, “Blending liquids,” in
ACM Transactions on Graphics, Vancouver, Canada, 2014, vol. 33, no. 4.
ista: 'Raveendran K, Wojtan C, Thuerey N, Türk G. 2014. Blending liquids. ACM Transactions
on Graphics. SIGGRAPH: International Conference and Exhibition on Computer Graphics
and Interactive Techniques vol. 33, 137.'
mla: Raveendran, Karthik, et al. “Blending Liquids.” ACM Transactions on Graphics,
vol. 33, no. 4, 137, ACM, 2014, doi:10.1145/2601097.2601126.
short: K. Raveendran, C. Wojtan, N. Thuerey, G. Türk, in:, ACM Transactions on Graphics,
ACM, 2014.
conference:
end_date: 2014-08-14
location: Vancouver, Canada
name: 'SIGGRAPH: International Conference and Exhibition on Computer Graphics and
Interactive Techniques'
start_date: 2014-08-10
date_created: 2018-12-11T11:55:28Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2022-08-25T14:02:46Z
day: '01'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1145/2601097.2601126
file:
- access_level: open_access
checksum: 1752760a2e71e254537f31c0d10d9c6c
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:27Z
date_updated: 2020-07-14T12:45:27Z
file_id: '4688'
file_name: IST-2016-606-v1+1_BlendingLiquids-Preprint.pdf
file_size: 8387384
relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: ' 33'
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 25636330-B435-11E9-9278-68D0E5697425
grant_number: 11-NSF-1070
name: ROOTS Genome-wide Analysis of Root Traits
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
publist_id: '4988'
pubrep_id: '606'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Blending liquids
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2014'
...
---
_id: '2059'
abstract:
- lang: eng
text: Plant embryogenesis is regulated by differential distribution of the plant
hormone auxin. However, the cells establishing these gradients during microspore
embryogenesis remain to be identified. For the first time, we describe, using
the DR5 or DR5rev reporter gene systems, the GFP- and GUS-based auxin biosensors
to monitor auxin during Brassica napus androgenesis at cellular resolution in
the initial stages. Our study provides evidence that the distribution of auxin
changes during embryo development and depends on the temperature-inducible in
vitro culture conditions. For this, microspores (mcs) were induced to embryogenesis
by heat treatment and then subjected to genetic modification via Agrobacterium
tumefaciens. The duration of high temperature treatment had a significant influence
on auxin distribution in isolated and in vitro-cultured microspores and on microspore-derived
embryo development. In the “mild” heat-treated (1 day at 32 °C) mcs, auxin localized
in a polar way already at the uni-nucleate microspore, which was critical for
the initiation of embryos with suspensor-like structure. Assuming a mean mcs radius
of 20 μm, endogenous auxin content in a single cell corresponded to concentration
of 1.01 μM. In mcs subjected to a prolonged heat (5 days at 32 °C), although auxin
concentration increased dozen times, auxin polarization was set up at a few-celled
pro-embryos without suspensor. Those embryos were enclosed in the outer wall called
the exine. The exine rupture was accompanied by the auxin gradient polarization.
Relative quantitative estimation of auxin, using time-lapse imaging, revealed
that primordia possess up to 1.3-fold higher amounts than those found in the root
apices of transgenic MDEs in the presence of exogenous auxin. Our results show,
for the first time, which concentration of endogenous auxin coincides with the
first cell division and how the high temperature interplays with auxin, by what
affects delay early establishing microspore polarity. Moreover, we present how
the local auxin accumulation demonstrates the apical–basal axis formation of the
androgenic embryo and directs the axiality of the adult haploid plant.
acknowledgement: The research was supported by the IPP PAS-IPGB SAS bilateral project
(“Molecular analysis of auxin distribution in oilseed androgenic embryos”), IPP
PAS-FWO VIB bilateral project (“Auxin as signaling molecule in doubled haploid production
of rape (B. napus var. oleifera)”), individual national research project 2011/01/D/NZ9/02547,
and VEGA 2-0090-14.
author:
- first_name: Ewa
full_name: Dubas, Ewa
last_name: Dubas
- first_name: Jana
full_name: Moravčíková, Jana
last_name: Moravčíková
- first_name: Jana
full_name: Libantová, Jana
last_name: Libantová
- first_name: Ildikó
full_name: Matušíková, Ildikó
last_name: Matušíková
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Iwona
full_name: Zur, Iwona
last_name: Zur
- first_name: Monika
full_name: Krzewska, Monika
last_name: Krzewska
citation:
ama: Dubas E, Moravčíková J, Libantová J, et al. The influence of heat stress on
auxin distribution in transgenic B napus microspores and microspore derived embryos.
Protoplasma. 2014;251(5):1077-1087. doi:10.1007/s00709-014-0616-1
apa: Dubas, E., Moravčíková, J., Libantová, J., Matušíková, I., Benková, E., Zur,
I., & Krzewska, M. (2014). The influence of heat stress on auxin distribution
in transgenic B napus microspores and microspore derived embryos. Protoplasma.
Springer. https://doi.org/10.1007/s00709-014-0616-1
chicago: Dubas, Ewa, Jana Moravčíková, Jana Libantová, Ildikó Matušíková, Eva Benková,
Iwona Zur, and Monika Krzewska. “The Influence of Heat Stress on Auxin Distribution
in Transgenic B Napus Microspores and Microspore Derived Embryos.” Protoplasma.
Springer, 2014. https://doi.org/10.1007/s00709-014-0616-1.
ieee: E. Dubas et al., “The influence of heat stress on auxin distribution
in transgenic B napus microspores and microspore derived embryos,” Protoplasma,
vol. 251, no. 5. Springer, pp. 1077–1087, 2014.
ista: Dubas E, Moravčíková J, Libantová J, Matušíková I, Benková E, Zur I, Krzewska
M. 2014. The influence of heat stress on auxin distribution in transgenic B napus
microspores and microspore derived embryos. Protoplasma. 251(5), 1077–1087.
mla: Dubas, Ewa, et al. “The Influence of Heat Stress on Auxin Distribution in Transgenic
B Napus Microspores and Microspore Derived Embryos.” Protoplasma, vol.
251, no. 5, Springer, 2014, pp. 1077–87, doi:10.1007/s00709-014-0616-1.
short: E. Dubas, J. Moravčíková, J. Libantová, I. Matušíková, E. Benková, I. Zur,
M. Krzewska, Protoplasma 251 (2014) 1077–1087.
date_created: 2018-12-11T11:55:29Z
date_published: 2014-02-20T00:00:00Z
date_updated: 2021-01-12T06:55:02Z
day: '20'
ddc:
- '580'
department:
- _id: EvBe
doi: 10.1007/s00709-014-0616-1
file:
- access_level: open_access
checksum: d570a6073765118fc0bb83c31d96fa53
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:18:31Z
date_updated: 2020-07-14T12:45:27Z
file_id: '5353'
file_name: IST-2015-394-v1+1_s00709-014-0616-1.pdf
file_size: 6377990
relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: ' 251'
issue: '5'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1077 - 1087
publication: Protoplasma
publication_status: published
publisher: Springer
publist_id: '4987'
pubrep_id: '394'
quality_controlled: '1'
scopus_import: 1
status: public
title: The influence of heat stress on auxin distribution in transgenic B napus microspores
and microspore derived embryos
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 251
year: '2014'
...
---
_id: '2061'
abstract:
- lang: eng
text: 'Development of cambium and its activity is important for our knowledge of
the mechanism of secondary growth. Arabidopsis thaliana emerges as a good model
plant for such a kind of study. Thus, this paper reports on cellular events taking
place in the interfascicular regions of inflorescence stems of A. thaliana, leading
to the development of interfascicular cambium from differentiated interfascicular
parenchyma cells (IPC). These events are as follows: appearance of auxin accumulation,
PIN1 gene expression, polar PIN1 protein localization in the basal plasma membrane
and periclinal divisions. Distribution of auxin was observed to be higher in differentiating
into cambium parenchyma cells compared to cells within the pith and cortex. Expression
of PIN1 in IPC was always preceded by auxin accumulation. Basal localization of
PIN1 was already established in the cells prior to their periclinal division.
These cellular events initiated within parenchyma cells adjacent to the vascular
bundles and successively extended from that point towards the middle region of
the interfascicular area, located between neighboring vascular bundles. The final
consequence of which was the closure of the cambial ring within the stem. Changes
in the chemical composition of IPC walls were also detected and included changes
of pectic epitopes, xyloglucans (XG) and extensins rich in hydroxyproline (HRGPs).
In summary, results presented in this paper describe interfascicular cambium ontogenesis
in terms of successive cellular events in the interfascicular regions of inflorescence
stems of Arabidopsis.'
author:
- first_name: Ewa
full_name: Mazur, Ewa
last_name: Mazur
- first_name: Ewa
full_name: Kurczyñska, Ewa
last_name: Kurczyñska
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Mazur E, Kurczyñska E, Friml J. Cellular events during interfascicular cambium
ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. 2014;251(5):1125-1139.
doi:10.1007/s00709-014-0620-5
apa: Mazur, E., Kurczyñska, E., & Friml, J. (2014). Cellular events during interfascicular
cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma.
Springer. https://doi.org/10.1007/s00709-014-0620-5
chicago: Mazur, Ewa, Ewa Kurczyñska, and Jiří Friml. “Cellular Events during Interfascicular
Cambium Ontogenesis in Inflorescence Stems of Arabidopsis.” Protoplasma.
Springer, 2014. https://doi.org/10.1007/s00709-014-0620-5.
ieee: E. Mazur, E. Kurczyñska, and J. Friml, “Cellular events during interfascicular
cambium ontogenesis in inflorescence stems of Arabidopsis,” Protoplasma,
vol. 251, no. 5. Springer, pp. 1125–1139, 2014.
ista: Mazur E, Kurczyñska E, Friml J. 2014. Cellular events during interfascicular
cambium ontogenesis in inflorescence stems of Arabidopsis. Protoplasma. 251(5),
1125–1139.
mla: Mazur, Ewa, et al. “Cellular Events during Interfascicular Cambium Ontogenesis
in Inflorescence Stems of Arabidopsis.” Protoplasma, vol. 251, no. 5, Springer,
2014, pp. 1125–39, doi:10.1007/s00709-014-0620-5.
short: E. Mazur, E. Kurczyñska, J. Friml, Protoplasma 251 (2014) 1125–1139.
date_created: 2018-12-11T11:55:29Z
date_published: 2014-02-14T00:00:00Z
date_updated: 2021-01-12T06:55:03Z
day: '14'
department:
- _id: JiFr
doi: 10.1007/s00709-014-0620-5
intvolume: ' 251'
issue: '5'
language:
- iso: eng
month: '02'
oa_version: None
page: 1125 - 1139
publication: Protoplasma
publication_status: published
publisher: Springer
publist_id: '4985'
quality_controlled: '1'
scopus_import: 1
status: public
title: Cellular events during interfascicular cambium ontogenesis in inflorescence
stems of Arabidopsis
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 251
year: '2014'
...
---
_id: '2062'
abstract:
- lang: eng
text: The success story of fast-spiking, parvalbumin-positive (PV+) GABAergic interneurons
(GABA, γ-aminobutyric acid) in the mammalian central nervous system is noteworthy.
In 1995, the properties of these interneurons were completely unknown. Twenty
years later, thanks to the massive use of subcellular patch-clamp techniques,
simultaneous multiple-cell recording, optogenetics, in vivo measurements, and
computational approaches, our knowledge about PV+ interneurons became more extensive
than for several types of pyramidal neurons. These findings have implications
beyond the “small world” of basic research on GABAergic cells. For example, the
results provide a first proof of principle that neuroscientists might be able
to close the gaps between the molecular, cellular, network, and behavioral levels,
representing one of the main challenges at the present time. Furthermore, the
results may form the basis for PV+ interneurons as therapeutic targets for brain
disease in the future. However, much needs to be learned about the basic function
of these interneurons before clinical neuroscientists will be able to use PV+
interneurons for therapeutic purposes.
article_number: '1255263'
author:
- first_name: Hua
full_name: Hu, Hua
id: 4AC0145C-F248-11E8-B48F-1D18A9856A87
last_name: Hu
- first_name: Jian
full_name: Gan, Jian
id: 3614E438-F248-11E8-B48F-1D18A9856A87
last_name: Gan
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: 'Hu H, Gan J, Jonas PM. Fast-spiking parvalbumin^+ GABAergic interneurons:
From cellular design to microcircuit function. Science. 2014;345(6196).
doi:10.1126/science.1255263'
apa: 'Hu, H., Gan, J., & Jonas, P. M. (2014). Fast-spiking parvalbumin^+ GABAergic
interneurons: From cellular design to microcircuit function. Science. American
Association for the Advancement of Science. https://doi.org/10.1126/science.1255263'
chicago: 'Hu, Hua, Jian Gan, and Peter M Jonas. “Fast-Spiking Parvalbumin^+ GABAergic
Interneurons: From Cellular Design to Microcircuit Function.” Science.
American Association for the Advancement of Science, 2014. https://doi.org/10.1126/science.1255263.'
ieee: 'H. Hu, J. Gan, and P. M. Jonas, “Fast-spiking parvalbumin^+ GABAergic interneurons:
From cellular design to microcircuit function,” Science, vol. 345, no.
6196. American Association for the Advancement of Science, 2014.'
ista: 'Hu H, Gan J, Jonas PM. 2014. Fast-spiking parvalbumin^+ GABAergic interneurons:
From cellular design to microcircuit function. Science. 345(6196), 1255263.'
mla: 'Hu, Hua, et al. “Fast-Spiking Parvalbumin^+ GABAergic Interneurons: From Cellular
Design to Microcircuit Function.” Science, vol. 345, no. 6196, 1255263,
American Association for the Advancement of Science, 2014, doi:10.1126/science.1255263.'
short: H. Hu, J. Gan, P.M. Jonas, Science 345 (2014).
date_created: 2018-12-11T11:55:29Z
date_published: 2014-08-01T00:00:00Z
date_updated: 2021-01-12T06:55:03Z
day: '01'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1126/science.1255263
ec_funded: 1
file:
- access_level: open_access
checksum: a0036a589037d37e86364fa25cc0a82f
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:00Z
date_updated: 2020-07-14T12:45:27Z
file_id: '5185'
file_name: IST-2017-821-v1+1_1255263JonasPVReviewTextR_Final.pdf
file_size: 215514
relation: main_file
- access_level: open_access
checksum: e1f57d2713725449cb898fdcb8ef47b8
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:01Z
date_updated: 2020-07-14T12:45:27Z
file_id: '5186'
file_name: IST-2017-821-v1+2_1255263JonasPVReviewFigures_Final.pdf
file_size: 1732723
relation: main_file
file_date_updated: 2020-07-14T12:45:27Z
has_accepted_license: '1'
intvolume: ' 345'
issue: '6196'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P24909-B24
name: Mechanisms of transmitter release at GABAergic synapses
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '268548'
name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '4984'
pubrep_id: '821'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Fast-spiking parvalbumin^+ GABAergic interneurons: From cellular design to
microcircuit function'
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 345
year: '2014'
...
---
_id: '2063'
abstract:
- lang: eng
text: We consider Markov decision processes (MDPs) which are a standard model for
probabilistic systems.We focus on qualitative properties forMDPs that can express
that desired behaviors of the system arise almost-surely (with probability 1)
or with positive probability. We introduce a new simulation relation to capture
the refinement relation ofMDPs with respect to qualitative properties, and present
discrete graph theoretic algorithms with quadratic complexity to compute the simulation
relation.We present an automated technique for assume-guarantee style reasoning
for compositional analysis ofMDPs with qualitative properties by giving a counterexample
guided abstraction-refinement approach to compute our new simulation relation.
We have implemented our algorithms and show that the compositional analysis leads
to significant improvements.
alternative_title:
- LNCS
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Chmelik, Martin
id: 3624234E-F248-11E8-B48F-1D18A9856A87
last_name: Chmelik
- first_name: Przemyslaw
full_name: Daca, Przemyslaw
id: 49351290-F248-11E8-B48F-1D18A9856A87
last_name: Daca
citation:
ama: 'Chatterjee K, Chmelik M, Daca P. CEGAR for qualitative analysis of probabilistic
systems. In: Vol 8559. Springer; 2014:473-490. doi:10.1007/978-3-319-08867-9_31'
apa: 'Chatterjee, K., Chmelik, M., & Daca, P. (2014). CEGAR for qualitative
analysis of probabilistic systems (Vol. 8559, pp. 473–490). Presented at the CAV:
Computer Aided Verification, Vienna, Austria: Springer. https://doi.org/10.1007/978-3-319-08867-9_31'
chicago: Chatterjee, Krishnendu, Martin Chmelik, and Przemyslaw Daca. “CEGAR for
Qualitative Analysis of Probabilistic Systems,” 8559:473–90. Springer, 2014. https://doi.org/10.1007/978-3-319-08867-9_31.
ieee: 'K. Chatterjee, M. Chmelik, and P. Daca, “CEGAR for qualitative analysis of
probabilistic systems,” presented at the CAV: Computer Aided Verification, Vienna,
Austria, 2014, vol. 8559, pp. 473–490.'
ista: 'Chatterjee K, Chmelik M, Daca P. 2014. CEGAR for qualitative analysis of
probabilistic systems. CAV: Computer Aided Verification, LNCS, vol. 8559, 473–490.'
mla: Chatterjee, Krishnendu, et al. CEGAR for Qualitative Analysis of Probabilistic
Systems. Vol. 8559, Springer, 2014, pp. 473–90, doi:10.1007/978-3-319-08867-9_31.
short: K. Chatterjee, M. Chmelik, P. Daca, in:, Springer, 2014, pp. 473–490.
conference:
end_date: 2014-07-22
location: Vienna, Austria
name: 'CAV: Computer Aided Verification'
start_date: 2014-07-18
date_created: 2018-12-11T11:55:30Z
date_published: 2014-07-01T00:00:00Z
date_updated: 2023-09-07T11:58:33Z
day: '01'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/978-3-319-08867-9_31
ec_funded: 1
intvolume: ' 8559'
language:
- iso: eng
month: '07'
oa_version: None
page: 473 - 490
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11402-N23
name: Moderne Concurrency Paradigms
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
publication_status: published
publisher: Springer
publist_id: '4978'
quality_controlled: '1'
related_material:
record:
- id: '5412'
relation: earlier_version
status: public
- id: '5413'
relation: earlier_version
status: public
- id: '5414'
relation: earlier_version
status: public
- id: '1155'
relation: dissertation_contains
status: public
status: public
title: CEGAR for qualitative analysis of probabilistic systems
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8559
year: '2014'
...
---
_id: '2064'
abstract:
- lang: eng
text: We examined the synaptic structure, quantity, and distribution of α-amino-3-hydroxy-5-methylisoxazole-4-propionic
acid (AMPA)- and N-methyl-D-aspartate (NMDA)-type glutamate receptors (AMPARs
and NMDARs, respectively) in rat cochlear nuclei by a highly sensitive freeze-fracture
replica labeling technique. Four excitatory synapses formed by two distinct inputs,
auditory nerve (AN) and parallel fibers (PF), on different cell types were analyzed.
These excitatory synapse types included AN synapses on bushy cells (AN-BC synapses)
and fusiform cells (AN-FC synapses) and PF synapses on FC (PF-FC synapses) and
cartwheel cell spines (PF-CwC synapses). Immunogold labeling revealed differences
in synaptic structure as well as AMPAR and NMDAR number and/or density in both
AN and PF synapses, indicating a target-dependent organization. The immunogold
receptor labeling also identified differences in the synaptic organization of
FCs based on AN or PF connections, indicating an input-dependent organization
in FCs. Among the four excitatory synapse types, the AN-BC synapses were the smallest
and had the most densely packed intramembrane particles (IMPs), whereas the PF-CwC
synapses were the largest and had sparsely packed IMPs. All four synapse types
showed positive correlations between the IMP-cluster area and the AMPAR number,
indicating a common intrasynapse-type relationship for glutamatergic synapses.
Immunogold particles for AMPARs were distributed over the entire area of individual
AN synapses; PF synapses often showed synaptic areas devoid of labeling. The gold-labeling
for NMDARs occurred in a mosaic fashion, with less positive correlations between
the IMP-cluster area and the NMDAR number. Our observations reveal target- and
input-dependent features in the structure, number, and organization of AMPARs
and NMDARs in AN and PF synapses.
acknowledgement: "National Institutes of Health (NIH) Grant Number: 1R01DC013048‐0;
Biotechnology and Biological Sciences Research Council, UK Grant Number: BB/J015938/1\r\n"
author:
- first_name: Maía
full_name: Rubio, Maía
last_name: Rubio
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Naomi
full_name: Kamasawa, Naomi
last_name: Kamasawa
- first_name: Cheryl
full_name: Clarkson, Cheryl
last_name: Clarkson
- first_name: Elek
full_name: Molnár, Elek
last_name: Molnár
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
citation:
ama: Rubio M, Fukazawa Y, Kamasawa N, Clarkson C, Molnár E, Shigemoto R. Target-
and input-dependent organization of AMPA and NMDA receptors in synaptic connections
of the cochlear nucleus. Journal of Comparative Neurology. 2014;522(18):4023-4042.
doi:10.1002/cne.23654
apa: Rubio, M., Fukazawa, Y., Kamasawa, N., Clarkson, C., Molnár, E., & Shigemoto,
R. (2014). Target- and input-dependent organization of AMPA and NMDA receptors
in synaptic connections of the cochlear nucleus. Journal of Comparative Neurology.
Wiley-Blackwell. https://doi.org/10.1002/cne.23654
chicago: Rubio, Maía, Yugo Fukazawa, Naomi Kamasawa, Cheryl Clarkson, Elek Molnár,
and Ryuichi Shigemoto. “Target- and Input-Dependent Organization of AMPA and NMDA
Receptors in Synaptic Connections of the Cochlear Nucleus.” Journal of Comparative
Neurology. Wiley-Blackwell, 2014. https://doi.org/10.1002/cne.23654.
ieee: M. Rubio, Y. Fukazawa, N. Kamasawa, C. Clarkson, E. Molnár, and R. Shigemoto,
“Target- and input-dependent organization of AMPA and NMDA receptors in synaptic
connections of the cochlear nucleus,” Journal of Comparative Neurology,
vol. 522, no. 18. Wiley-Blackwell, pp. 4023–4042, 2014.
ista: Rubio M, Fukazawa Y, Kamasawa N, Clarkson C, Molnár E, Shigemoto R. 2014.
Target- and input-dependent organization of AMPA and NMDA receptors in synaptic
connections of the cochlear nucleus. Journal of Comparative Neurology. 522(18),
4023–4042.
mla: Rubio, Maía, et al. “Target- and Input-Dependent Organization of AMPA and NMDA
Receptors in Synaptic Connections of the Cochlear Nucleus.” Journal of Comparative
Neurology, vol. 522, no. 18, Wiley-Blackwell, 2014, pp. 4023–42, doi:10.1002/cne.23654.
short: M. Rubio, Y. Fukazawa, N. Kamasawa, C. Clarkson, E. Molnár, R. Shigemoto,
Journal of Comparative Neurology 522 (2014) 4023–4042.
date_created: 2018-12-11T11:55:30Z
date_published: 2014-07-29T00:00:00Z
date_updated: 2021-01-12T06:55:05Z
day: '29'
department:
- _id: RySh
doi: 10.1002/cne.23654
intvolume: ' 522'
issue: '18'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4198489/
month: '07'
oa: 1
oa_version: Submitted Version
page: 4023 - 4042
publication: Journal of Comparative Neurology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '4974'
quality_controlled: '1'
scopus_import: 1
status: public
title: Target- and input-dependent organization of AMPA and NMDA receptors in synaptic
connections of the cochlear nucleus
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 522
year: '2014'
...
---
_id: '13399'
abstract:
- lang: eng
text: Nature has long inspired scientists with its seemingly unlimited ability to
harness solar energy and to utilize it to drive various physiological processes.
With the help of man-made molecular photoswitches, we now have the potential to
outperform natural systems in many ways, with the ultimate goal of fabricating
multifunctional materials that operate at different light wavelengths. An important
challenge in developing light-controlled artificial molecular machines lies in
attaining a detailed understanding of the photoisomerization-coupled conformational
changes that occur in macromolecules and molecular assemblies. In this issue of
ACS Nano, Bléger, Rabe, and co-workers use force microscopy to provide interesting
insights into the behavior of individual photoresponsive molecules and to identify
contraction, extension, and crawling events accompanying light-induced isomerization.
article_processing_charge: No
article_type: original
author:
- first_name: Pintu K.
full_name: Kundu, Pintu K.
last_name: Kundu
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Kundu PK, Klajn R. Watching single molecules move in response to light. ACS
Nano. 2014;8(12):11913-11916. doi:10.1021/nn506656r
apa: Kundu, P. K., & Klajn, R. (2014). Watching single molecules move in response
to light. ACS Nano. American Chemical Society. https://doi.org/10.1021/nn506656r
chicago: Kundu, Pintu K., and Rafal Klajn. “Watching Single Molecules Move in Response
to Light.” ACS Nano. American Chemical Society, 2014. https://doi.org/10.1021/nn506656r.
ieee: P. K. Kundu and R. Klajn, “Watching single molecules move in response to light,”
ACS Nano, vol. 8, no. 12. American Chemical Society, pp. 11913–11916, 2014.
ista: Kundu PK, Klajn R. 2014. Watching single molecules move in response to light.
ACS Nano. 8(12), 11913–11916.
mla: Kundu, Pintu K., and Rafal Klajn. “Watching Single Molecules Move in Response
to Light.” ACS Nano, vol. 8, no. 12, American Chemical Society, 2014, pp.
11913–16, doi:10.1021/nn506656r.
short: P.K. Kundu, R. Klajn, ACS Nano 8 (2014) 11913–11916.
date_created: 2023-08-01T09:45:42Z
date_published: 2014-12-23T00:00:00Z
date_updated: 2023-08-08T07:18:58Z
day: '23'
doi: 10.1021/nn506656r
extern: '1'
external_id:
pmid:
- '25474733'
intvolume: ' 8'
issue: '12'
keyword:
- General Physics and Astronomy
- General Engineering
- General Materials Science
language:
- iso: eng
month: '12'
oa_version: None
page: 11913-11916
pmid: 1
publication: ACS Nano
publication_identifier:
eissn:
- 1936-086X
issn:
- 1936-0851
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Watching single molecules move in response to light
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2014'
...
---
_id: '13400'
abstract:
- lang: eng
text: Organizing inorganic nanocrystals into complex architectures is challenging
and typically relies on preexisting templates, such as properly folded DNA or
polypeptide chains. We found that under carefully controlled conditions, cubic
nanocrystals of magnetite self-assemble into arrays of helical superstructures
in a template-free manner with >99% yield. Computer simulations revealed that
the formation of helices is determined by the interplay of van der Waals and magnetic
dipole-dipole interactions, Zeeman coupling, and entropic forces and can be attributed
to spontaneous formation of chiral nanocube clusters. Neighboring helices within
their densely packed ensembles tended to adopt the same handedness in order to
maximize packing, thus revealing a novel mechanism of symmetry breaking and chirality
amplification.
article_processing_charge: No
article_type: original
author:
- first_name: Gurvinder
full_name: Singh, Gurvinder
last_name: Singh
- first_name: Henry
full_name: Chan, Henry
last_name: Chan
- first_name: Artem
full_name: Baskin, Artem
last_name: Baskin
- first_name: Elijah
full_name: Gelman, Elijah
last_name: Gelman
- first_name: Nikita
full_name: Repnin, Nikita
last_name: Repnin
- first_name: Petr
full_name: Král, Petr
last_name: Král
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Singh G, Chan H, Baskin A, et al. Self-assembly of magnetite nanocubes into
helical superstructures. Science. 2014;345(6201):1149-1153. doi:10.1126/science.1254132
apa: Singh, G., Chan, H., Baskin, A., Gelman, E., Repnin, N., Král, P., & Klajn,
R. (2014). Self-assembly of magnetite nanocubes into helical superstructures.
Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1254132
chicago: Singh, Gurvinder, Henry Chan, Artem Baskin, Elijah Gelman, Nikita Repnin,
Petr Král, and Rafal Klajn. “Self-Assembly of Magnetite Nanocubes into Helical
Superstructures.” Science. American Association for the Advancement of
Science, 2014. https://doi.org/10.1126/science.1254132.
ieee: G. Singh et al., “Self-assembly of magnetite nanocubes into helical
superstructures,” Science, vol. 345, no. 6201. American Association for
the Advancement of Science, pp. 1149–1153, 2014.
ista: Singh G, Chan H, Baskin A, Gelman E, Repnin N, Král P, Klajn R. 2014. Self-assembly
of magnetite nanocubes into helical superstructures. Science. 345(6201), 1149–1153.
mla: Singh, Gurvinder, et al. “Self-Assembly of Magnetite Nanocubes into Helical
Superstructures.” Science, vol. 345, no. 6201, American Association for
the Advancement of Science, 2014, pp. 1149–53, doi:10.1126/science.1254132.
short: G. Singh, H. Chan, A. Baskin, E. Gelman, N. Repnin, P. Král, R. Klajn, Science
345 (2014) 1149–1153.
date_created: 2023-08-01T09:45:56Z
date_published: 2014-07-24T00:00:00Z
date_updated: 2023-08-08T07:23:05Z
day: '24'
doi: 10.1126/science.1254132
extern: '1'
external_id:
pmid:
- '25061133'
intvolume: ' 345'
issue: '6201'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa_version: None
page: 1149-1153
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-assembly of magnetite nanocubes into helical superstructures
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 345
year: '2014'
...
---
_id: '13401'
abstract:
- lang: eng
text: A compound combining the features of a molecular rotor and a photoswitch was
synthesized and was shown to exist as three diastereomers, which interconvert
via a reversible cyclic reaction scheme. Each of the three diastereomers was isolated,
and by following the equilibration kinetics, activation barriers for all reactions
were calculated. The results indicate that the properties of molecular switches
depend heavily on their immediate chemical environment. The conclusions are important
in the context of designing new switchable molecules and materials.
article_processing_charge: No
article_type: original
author:
- first_name: Pintu K.
full_name: Kundu, Pintu K.
last_name: Kundu
- first_name: Avishai
full_name: Lerner, Avishai
last_name: Lerner
- first_name: Kristina
full_name: Kučanda, Kristina
last_name: Kučanda
- first_name: Gregory
full_name: Leitus, Gregory
last_name: Leitus
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Kundu PK, Lerner A, Kučanda K, Leitus G, Klajn R. Cyclic kinetics during thermal
equilibration of an axially chiral bis-spiropyran. Journal of the American
Chemical Society. 2014;136(32):11276-11279. doi:10.1021/ja505948q
apa: Kundu, P. K., Lerner, A., Kučanda, K., Leitus, G., & Klajn, R. (2014).
Cyclic kinetics during thermal equilibration of an axially chiral bis-spiropyran.
Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/ja505948q
chicago: Kundu, Pintu K., Avishai Lerner, Kristina Kučanda, Gregory Leitus, and
Rafal Klajn. “Cyclic Kinetics during Thermal Equilibration of an Axially Chiral
Bis-Spiropyran.” Journal of the American Chemical Society. American Chemical
Society, 2014. https://doi.org/10.1021/ja505948q.
ieee: P. K. Kundu, A. Lerner, K. Kučanda, G. Leitus, and R. Klajn, “Cyclic kinetics
during thermal equilibration of an axially chiral bis-spiropyran,” Journal
of the American Chemical Society, vol. 136, no. 32. American Chemical Society,
pp. 11276–11279, 2014.
ista: Kundu PK, Lerner A, Kučanda K, Leitus G, Klajn R. 2014. Cyclic kinetics during
thermal equilibration of an axially chiral bis-spiropyran. Journal of the American
Chemical Society. 136(32), 11276–11279.
mla: Kundu, Pintu K., et al. “Cyclic Kinetics during Thermal Equilibration of an
Axially Chiral Bis-Spiropyran.” Journal of the American Chemical Society,
vol. 136, no. 32, American Chemical Society, 2014, pp. 11276–79, doi:10.1021/ja505948q.
short: P.K. Kundu, A. Lerner, K. Kučanda, G. Leitus, R. Klajn, Journal of the American
Chemical Society 136 (2014) 11276–11279.
date_created: 2023-08-01T09:46:12Z
date_published: 2014-08-13T00:00:00Z
date_updated: 2023-08-08T07:25:37Z
day: '13'
doi: 10.1021/ja505948q
extern: '1'
external_id:
pmid:
- '25072292'
intvolume: ' 136'
issue: '32'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
month: '08'
oa_version: None
page: 11276-11279
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
eissn:
- 1520-5126
issn:
- 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cyclic kinetics during thermal equilibration of an axially chiral bis-spiropyran
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2014'
...
---
_id: '13402'
abstract:
- lang: eng
text: Nanoporous frameworks are polymeric materials built from rigid molecules,
which give rise to their nanoporous structures with applications in gas sorption
and storage, catalysis and others. Conceptually new applications could emerge,
should these beneficial properties be manipulated by external stimuli in a reversible
manner. One approach to render nanoporous frameworks responsive to external signals
would be to immobilize molecular switches within their nanopores. Although the
majority of molecular switches require conformational freedom to isomerize, and
switching in the solid state is prohibited, the nanopores may provide enough room
for the switches to efficiently isomerize. Here we describe two families of nanoporous
materials incorporating the spiropyran molecular switch. These materials exhibit
a variety of interesting properties, including reversible photochromism and acidochromism
under solvent-free conditions, light-controlled capture and release of metal ions,
as well reversible chromism induced by solvation/desolvation.
article_number: '3588'
article_processing_charge: No
article_type: original
author:
- first_name: Pintu K.
full_name: Kundu, Pintu K.
last_name: Kundu
- first_name: Gregory L.
full_name: Olsen, Gregory L.
last_name: Olsen
- first_name: Vladimir
full_name: Kiss, Vladimir
last_name: Kiss
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Kundu PK, Olsen GL, Kiss V, Klajn R. Nanoporous frameworks exhibiting multiple
stimuli responsiveness. Nature Communications. 2014;5. doi:10.1038/ncomms4588
apa: Kundu, P. K., Olsen, G. L., Kiss, V., & Klajn, R. (2014). Nanoporous frameworks
exhibiting multiple stimuli responsiveness. Nature Communications. Springer
Nature. https://doi.org/10.1038/ncomms4588
chicago: Kundu, Pintu K., Gregory L. Olsen, Vladimir Kiss, and Rafal Klajn. “Nanoporous
Frameworks Exhibiting Multiple Stimuli Responsiveness.” Nature Communications.
Springer Nature, 2014. https://doi.org/10.1038/ncomms4588.
ieee: P. K. Kundu, G. L. Olsen, V. Kiss, and R. Klajn, “Nanoporous frameworks exhibiting
multiple stimuli responsiveness,” Nature Communications, vol. 5. Springer
Nature, 2014.
ista: Kundu PK, Olsen GL, Kiss V, Klajn R. 2014. Nanoporous frameworks exhibiting
multiple stimuli responsiveness. Nature Communications. 5, 3588.
mla: Kundu, Pintu K., et al. “Nanoporous Frameworks Exhibiting Multiple Stimuli
Responsiveness.” Nature Communications, vol. 5, 3588, Springer Nature,
2014, doi:10.1038/ncomms4588.
short: P.K. Kundu, G.L. Olsen, V. Kiss, R. Klajn, Nature Communications 5 (2014).
date_created: 2023-08-01T09:46:27Z
date_published: 2014-04-07T00:00:00Z
date_updated: 2023-08-08T07:28:10Z
day: '07'
doi: 10.1038/ncomms4588
extern: '1'
external_id:
pmid:
- '24709950'
intvolume: ' 5'
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/ncomms4588
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nanoporous frameworks exhibiting multiple stimuli responsiveness
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2014'
...