---
_id: '1400'
abstract:
- lang: eng
  text: Cancer results from an uncontrolled growth of abnormal cells. Sequentially
    accumulated genetic and epigenetic alterations decrease cell death and increase
    cell replication. We used mathematical models to quantify the effect of driver
    gene mutations. The recently developed targeted therapies can lead to dramatic
    regressions. However, in solid cancers, clinical responses are often short-lived
    because resistant cancer cells evolve. We estimated that approximately 50 different
    mutations can confer resistance to a typical targeted therapeutic agent. We find
    that resistant cells are likely to be present in expanded subclones before the
    start of the treatment. The dominant strategy to prevent the evolution of resistance
    is combination therapy. Our analytical results suggest that in most patients,
    dual therapy, but not monotherapy, can result in long-term disease control. However,
    long-term control can only occur if there are no possible mutations in the genome
    that can cause cross-resistance to both drugs. Furthermore, we showed that simultaneous
    therapy with two drugs is much more likely to result in long-term disease control
    than sequential therapy with the same drugs. To improve our understanding of the
    underlying subclonal evolution we reconstruct the evolutionary history of a patient's
    cancer from next-generation sequencing data of spatially-distinct DNA samples.
    Using a quantitative measure of genetic relatedness, we found that pancreatic
    cancers and their metastases demonstrated a higher level of relatedness than that
    expected for any two cells randomly taken from a normal tissue. This minimal amount
    of genetic divergence among advanced lesions indicates that genetic heterogeneity,
    when quantitatively defined, is not a fundamental feature of the natural history
    of untreated pancreatic cancers. Our newly developed, phylogenomic tool Treeomics
    finds evidence for seeding patterns of metastases and can directly be used to
    discover rules governing the evolution of solid malignancies to transform cancer
    into a more predictable disease.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Johannes
  full_name: Reiter, Johannes
  id: 4A918E98-F248-11E8-B48F-1D18A9856A87
  last_name: Reiter
  orcid: 0000-0002-0170-7353
citation:
  ama: Reiter J. The subclonal evolution of cancer. 2015.
  apa: Reiter, J. (2015). <i>The subclonal evolution of cancer</i>. Institute of Science
    and Technology Austria.
  chicago: Reiter, Johannes. “The Subclonal Evolution of Cancer.” Institute of Science
    and Technology Austria, 2015.
  ieee: J. Reiter, “The subclonal evolution of cancer,” Institute of Science and Technology
    Austria, 2015.
  ista: Reiter J. 2015. The subclonal evolution of cancer. Institute of Science and
    Technology Austria.
  mla: Reiter, Johannes. <i>The Subclonal Evolution of Cancer</i>. Institute of Science
    and Technology Austria, 2015.
  short: J. Reiter, The Subclonal Evolution of Cancer, Institute of Science and Technology
    Austria, 2015.
date_created: 2018-12-11T11:51:48Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2023-09-07T11:40:44Z
day: '01'
degree_awarded: PhD
department:
- _id: KrCh
language:
- iso: eng
month: '04'
oa_version: None
page: '183'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '5807'
related_material:
  record:
  - id: '1709'
    relation: part_of_dissertation
    status: public
  - id: '2000'
    relation: part_of_dissertation
    status: public
  - id: '2247'
    relation: part_of_dissertation
    status: public
  - id: '2816'
    relation: part_of_dissertation
    status: public
  - id: '2858'
    relation: part_of_dissertation
    status: public
  - id: '3157'
    relation: part_of_dissertation
    status: public
  - id: '3260'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
title: The subclonal evolution of cancer
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2015'
...
---
_id: '1401'
abstract:
- lang: eng
  text: 'The human ability to recognize objects in complex scenes has driven research
    in the computer vision field over couple of decades. This thesis focuses on the
    object recognition task in images. That is, given the image, we want the computer
    system to be able to predict the class of the object that appears in the image.
    A recent successful attempt to bridge semantic understanding of the image perceived
    by humans and by computers uses attribute-based models. Attributes are semantic
    properties of the objects shared across different categories, which humans and
    computers can decide on. To explore the attribute-based models we take a statistical
    machine learning approach, and address two key learning challenges in view of
    object recognition task: learning augmented attributes as mid-level discriminative
    feature representation, and learning with attributes as privileged information.
    Our main contributions are parametric and non-parametric models and algorithms
    to solve these frameworks. In the parametric approach, we explore an autoencoder
    model combined with the large margin nearest neighbor principle for mid-level
    feature learning, and linear support vector machines for learning with privileged
    information. In the non-parametric approach, we propose a supervised Indian Buffet
    Process for automatic augmentation of semantic attributes, and explore the Gaussian
    Processes classification framework for learning with privileged information. A
    thorough experimental analysis shows the effectiveness of the proposed models
    in both parametric and non-parametric views.'
acknowledgement: "I would like to thank my supervisor, Christoph Lampert, for guidance
  throughout my studies and for patience in transforming me into a scientist, and
  my thesis committee, Chris Wojtan and Horst Bischof, for their help and advice.
  \r\n\r\nI would like to thank Elisabeth Hacker who perfectly assisted all my administrative
  needs and was always nice and friendly to me, and the campus team for making the
  IST Austria campus my second home. \r\nI was honored to collaborate with brilliant
  researchers and to learn from their experience. Undoubtedly, I learned most of all
  from Novi Quadrianto: brainstorming our projects and getting exciting results was
  the most enjoyable part of my work – thank you! I am also grateful to David Knowles,
  Zoubin Ghahramani, Daniel Hernández-Lobato, Kristian Kersting and Anastasia Pentina
  for the fantastic projects we worked on together, and to Kristen Grauman and Adriana
  Kovashka for the exceptional experience working with user studies. I would like
  to thank my colleagues at IST Austria and my office mates who shared their happy
  moods, scientific breakthroughs and thought-provoking conversations with me: Chao,
  Filip, Rustem, Asya, Sameh, Alex, Vlad, Mayu, Neel, Csaba, Thomas, Vladimir, Cristina,
  Alex Z., Avro, Amelie and Emilie, Andreas H. and Andreas E., Chris, Lena, Michael,
  Ali and Ipek, Vera, Igor, Katia. Special thanks to Morten for the countless games
  of table soccer we played together and the tournaments we teamed up for: we will
  definitely win next time:) A very warm hug to Asya for always being so inspiring
  and supportive to me, and for helping me to increase the proportion of female computer
  scientists in our group. "
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Viktoriia
  full_name: Sharmanska, Viktoriia
  id: 2EA6D09E-F248-11E8-B48F-1D18A9856A87
  last_name: Sharmanska
  orcid: 0000-0003-0192-9308
citation:
  ama: 'Sharmanska V. Learning with attributes for object recognition: Parametric
    and non-parametrics views. 2015. doi:<a href="https://doi.org/10.15479/at:ista:1401">10.15479/at:ista:1401</a>'
  apa: 'Sharmanska, V. (2015). <i>Learning with attributes for object recognition:
    Parametric and non-parametrics views</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/at:ista:1401">https://doi.org/10.15479/at:ista:1401</a>'
  chicago: 'Sharmanska, Viktoriia. “Learning with Attributes for Object Recognition:
    Parametric and Non-Parametrics Views.” Institute of Science and Technology Austria,
    2015. <a href="https://doi.org/10.15479/at:ista:1401">https://doi.org/10.15479/at:ista:1401</a>.'
  ieee: 'V. Sharmanska, “Learning with attributes for object recognition: Parametric
    and non-parametrics views,” Institute of Science and Technology Austria, 2015.'
  ista: 'Sharmanska V. 2015. Learning with attributes for object recognition: Parametric
    and non-parametrics views. Institute of Science and Technology Austria.'
  mla: 'Sharmanska, Viktoriia. <i>Learning with Attributes for Object Recognition:
    Parametric and Non-Parametrics Views</i>. Institute of Science and Technology
    Austria, 2015, doi:<a href="https://doi.org/10.15479/at:ista:1401">10.15479/at:ista:1401</a>.'
  short: 'V. Sharmanska, Learning with Attributes for Object Recognition: Parametric
    and Non-Parametrics Views, Institute of Science and Technology Austria, 2015.'
date_created: 2018-12-11T11:51:48Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2023-09-07T11:40:11Z
day: '01'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: ChLa
- _id: GradSch
doi: 10.15479/at:ista:1401
file:
- access_level: open_access
  checksum: 3605b402bb6934e09ae4cf672c84baf7
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-22T11:33:17Z
  date_updated: 2021-02-22T11:33:17Z
  file_id: '9177'
  file_name: 2015_Thesis_Sharmanska.pdf
  file_size: 7964342
  relation: main_file
  success: 1
- access_level: closed
  checksum: e37593b3ee75bf3180629df2d6ca8f4e
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-11-16T14:40:45Z
  date_updated: 2021-11-17T13:47:24Z
  file_id: '10297'
  file_name: 2015_Thesis_Sharmanska_pdfa.pdf
  file_size: 7372241
  relation: main_file
file_date_updated: 2021-11-17T13:47:24Z
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- url: http://users.sussex.ac.uk/~nq28/viktoriia/Thesis_Sharmanska.pdf
month: '04'
oa: 1
oa_version: Published Version
page: '144'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '5806'
status: public
supervisor:
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
title: 'Learning with attributes for object recognition: Parametric and non-parametrics
  views'
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2015'
...
---
_id: '14013'
abstract:
- lang: eng
  text: The ultrafast motion of electrons and holes after light-matter interaction
    is fundamental to a broad range of chemical and biophysical processes. We advanced
    high-harmonic spectroscopy to resolve spatially and temporally the migration of
    an electron hole immediately after ionization of iodoacetylene while simultaneously
    demonstrating extensive control over the process. A multidimensional approach,
    based on the measurement and accurate theoretical description of both even and
    odd harmonic orders, enabled us to reconstruct both quantum amplitudes and phases
    of the electronic states with a resolution of ~100 attoseconds. We separately
    reconstructed quasi-field-free and laser-controlled charge migration as a function
    of the spatial orientation of the molecule and determined the shape of the hole
    created by ionization. Our technique opens the prospect of laser control over
    electronic primary processes.
article_processing_charge: No
article_type: original
author:
- first_name: P. M.
  full_name: Kraus, P. M.
  last_name: Kraus
- first_name: B.
  full_name: Mignolet, B.
  last_name: Mignolet
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: A.
  full_name: Rupenyan, A.
  last_name: Rupenyan
- first_name: L.
  full_name: Horný, L.
  last_name: Horný
- first_name: E. F.
  full_name: Penka, E. F.
  last_name: Penka
- first_name: G.
  full_name: Grassi, G.
  last_name: Grassi
- first_name: O. I.
  full_name: Tolstikhin, O. I.
  last_name: Tolstikhin
- first_name: J.
  full_name: Schneider, J.
  last_name: Schneider
- first_name: F.
  full_name: Jensen, F.
  last_name: Jensen
- first_name: L. B.
  full_name: Madsen, L. B.
  last_name: Madsen
- first_name: A. D.
  full_name: Bandrauk, A. D.
  last_name: Bandrauk
- first_name: F.
  full_name: Remacle, F.
  last_name: Remacle
- first_name: H. J.
  full_name: Wörner, H. J.
  last_name: Wörner
citation:
  ama: Kraus PM, Mignolet B, Baykusheva DR, et al. Measurement and laser control of
    attosecond charge migration in ionized iodoacetylene. <i>Science</i>. 2015;350(6262):790-795.
    doi:<a href="https://doi.org/10.1126/science.aab2160">10.1126/science.aab2160</a>
  apa: Kraus, P. M., Mignolet, B., Baykusheva, D. R., Rupenyan, A., Horný, L., Penka,
    E. F., … Wörner, H. J. (2015). Measurement and laser control of attosecond charge
    migration in ionized iodoacetylene. <i>Science</i>. American Association for the
    Advancement of Science. <a href="https://doi.org/10.1126/science.aab2160">https://doi.org/10.1126/science.aab2160</a>
  chicago: Kraus, P. M., B. Mignolet, Denitsa Rangelova Baykusheva, A. Rupenyan, L.
    Horný, E. F. Penka, G. Grassi, et al. “Measurement and Laser Control of Attosecond
    Charge Migration in Ionized Iodoacetylene.” <i>Science</i>. American Association
    for the Advancement of Science, 2015. <a href="https://doi.org/10.1126/science.aab2160">https://doi.org/10.1126/science.aab2160</a>.
  ieee: P. M. Kraus <i>et al.</i>, “Measurement and laser control of attosecond charge
    migration in ionized iodoacetylene,” <i>Science</i>, vol. 350, no. 6262. American
    Association for the Advancement of Science, pp. 790–795, 2015.
  ista: Kraus PM, Mignolet B, Baykusheva DR, Rupenyan A, Horný L, Penka EF, Grassi
    G, Tolstikhin OI, Schneider J, Jensen F, Madsen LB, Bandrauk AD, Remacle F, Wörner
    HJ. 2015. Measurement and laser control of attosecond charge migration in ionized
    iodoacetylene. Science. 350(6262), 790–795.
  mla: Kraus, P. M., et al. “Measurement and Laser Control of Attosecond Charge Migration
    in Ionized Iodoacetylene.” <i>Science</i>, vol. 350, no. 6262, American Association
    for the Advancement of Science, 2015, pp. 790–95, doi:<a href="https://doi.org/10.1126/science.aab2160">10.1126/science.aab2160</a>.
  short: P.M. Kraus, B. Mignolet, D.R. Baykusheva, A. Rupenyan, L. Horný, E.F. Penka,
    G. Grassi, O.I. Tolstikhin, J. Schneider, F. Jensen, L.B. Madsen, A.D. Bandrauk,
    F. Remacle, H.J. Wörner, Science 350 (2015) 790–795.
date_created: 2023-08-10T06:37:35Z
date_published: 2015-10-22T00:00:00Z
date_updated: 2023-08-22T08:47:39Z
day: '22'
doi: 10.1126/science.aab2160
extern: '1'
external_id:
  pmid:
  - '26494175'
intvolume: '       350'
issue: '6262'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '10'
oa_version: None
page: 790-795
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Measurement and laser control of attosecond charge migration in ionized iodoacetylene
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 350
year: '2015'
...
---
_id: '14014'
abstract:
- lang: eng
  text: We have studied a coupled electronic-nuclear wave packet in nitric oxide using
    time-resolved strong-field photoelectron holography and rescattering. We show
    that the electronic dynamics mainly appears in the holographic structures whereas
    nuclear motion strongly modulates the angular distribution of the rescattered
    photoelectrons.
article_number: '112135'
article_processing_charge: No
article_type: original
author:
- first_name: Samuel G
  full_name: Walt, Samuel G
  last_name: Walt
- first_name: N Bhargava
  full_name: Ram, N Bhargava
  last_name: Ram
- first_name: Aaron
  full_name: von Conta, Aaron
  last_name: von Conta
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Marcos
  full_name: Atala, Marcos
  last_name: Atala
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
citation:
  ama: 'Walt SG, Ram NB, von Conta A, Baykusheva DR, Atala M, Wörner HJ. Resolving
    the dynamics of valence-shell electrons and nuclei through laser-induced diffraction
    and holography. <i>Journal of Physics: Conference Series</i>. 2015;635(11). doi:<a
    href="https://doi.org/10.1088/1742-6596/635/11/112135">10.1088/1742-6596/635/11/112135</a>'
  apa: 'Walt, S. G., Ram, N. B., von Conta, A., Baykusheva, D. R., Atala, M., &#38;
    Wörner, H. J. (2015). Resolving the dynamics of valence-shell electrons and nuclei
    through laser-induced diffraction and holography. <i>Journal of Physics: Conference
    Series</i>. IOP Publishing. <a href="https://doi.org/10.1088/1742-6596/635/11/112135">https://doi.org/10.1088/1742-6596/635/11/112135</a>'
  chicago: 'Walt, Samuel G, N Bhargava Ram, Aaron von Conta, Denitsa Rangelova Baykusheva,
    Marcos Atala, and Hans Jakob Wörner. “Resolving the Dynamics of Valence-Shell
    Electrons and Nuclei through Laser-Induced Diffraction and Holography.” <i>Journal
    of Physics: Conference Series</i>. IOP Publishing, 2015. <a href="https://doi.org/10.1088/1742-6596/635/11/112135">https://doi.org/10.1088/1742-6596/635/11/112135</a>.'
  ieee: 'S. G. Walt, N. B. Ram, A. von Conta, D. R. Baykusheva, M. Atala, and H. J.
    Wörner, “Resolving the dynamics of valence-shell electrons and nuclei through
    laser-induced diffraction and holography,” <i>Journal of Physics: Conference Series</i>,
    vol. 635, no. 11. IOP Publishing, 2015.'
  ista: 'Walt SG, Ram NB, von Conta A, Baykusheva DR, Atala M, Wörner HJ. 2015. Resolving
    the dynamics of valence-shell electrons and nuclei through laser-induced diffraction
    and holography. Journal of Physics: Conference Series. 635(11), 112135.'
  mla: 'Walt, Samuel G., et al. “Resolving the Dynamics of Valence-Shell Electrons
    and Nuclei through Laser-Induced Diffraction and Holography.” <i>Journal of Physics:
    Conference Series</i>, vol. 635, no. 11, 112135, IOP Publishing, 2015, doi:<a
    href="https://doi.org/10.1088/1742-6596/635/11/112135">10.1088/1742-6596/635/11/112135</a>.'
  short: 'S.G. Walt, N.B. Ram, A. von Conta, D.R. Baykusheva, M. Atala, H.J. Wörner,
    Journal of Physics: Conference Series 635 (2015).'
date_created: 2023-08-10T06:37:44Z
date_published: 2015-11-01T00:00:00Z
date_updated: 2023-08-22T08:51:33Z
day: '01'
doi: 10.1088/1742-6596/635/11/112135
extern: '1'
intvolume: '       635'
issue: '11'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1088/1742-6596/635/11/112135
month: '11'
oa: 1
oa_version: Published Version
publication: 'Journal of Physics: Conference Series'
publication_identifier:
  eissn:
  - 1742-6596
  issn:
  - 1742-6588
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Resolving the dynamics of valence-shell electrons and nuclei through laser-induced
  diffraction and holography
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 635
year: '2015'
...
---
_id: '14015'
abstract:
- lang: eng
  text: We advance high-harmonic spectroscopy to resolve molecular charge migration
    in time and space and simultaneously demonstrate extensive control over the process.
    A multidimensional approach enables us to reconstruct both quantum amplitudes
    and phases with a resolution of better than 100 attoseconds and to separately
    reconstruct field-free and laser- driven charge migration. Our techniques make
    charge migration in molecules measurable on the attosecond time scale and open
    new avenues for laser control of electronic primary processes.
article_number: '112136'
article_processing_charge: No
article_type: original
author:
- first_name: P M
  full_name: Kraus, P M
  last_name: Kraus
- first_name: B
  full_name: Mignolet, B
  last_name: Mignolet
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: A
  full_name: Rupenyan, A
  last_name: Rupenyan
- first_name: L
  full_name: Horný, L
  last_name: Horný
- first_name: E F
  full_name: Penka, E F
  last_name: Penka
- first_name: O I
  full_name: Tolstikhin, O I
  last_name: Tolstikhin
- first_name: J
  full_name: Schneider, J
  last_name: Schneider
- first_name: F
  full_name: Jensen, F
  last_name: Jensen
- first_name: L B
  full_name: Madsen, L B
  last_name: Madsen
- first_name: A D
  full_name: Bandrauk, A D
  last_name: Bandrauk
- first_name: F
  full_name: Remacle, F
  last_name: Remacle
- first_name: H J
  full_name: Wörner, H J
  last_name: Wörner
citation:
  ama: 'Kraus PM, Mignolet B, Baykusheva DR, et al. Attosecond charge migration and
    its laser control. <i>Journal of Physics: Conference Series</i>. 2015;635(11).
    doi:<a href="https://doi.org/10.1088/1742-6596/635/11/112136">10.1088/1742-6596/635/11/112136</a>'
  apa: 'Kraus, P. M., Mignolet, B., Baykusheva, D. R., Rupenyan, A., Horný, L., Penka,
    E. F., … Wörner, H. J. (2015). Attosecond charge migration and its laser control.
    <i>Journal of Physics: Conference Series</i>. IOP Publishing. <a href="https://doi.org/10.1088/1742-6596/635/11/112136">https://doi.org/10.1088/1742-6596/635/11/112136</a>'
  chicago: 'Kraus, P M, B Mignolet, Denitsa Rangelova Baykusheva, A Rupenyan, L Horný,
    E F Penka, O I Tolstikhin, et al. “Attosecond Charge Migration and Its Laser Control.”
    <i>Journal of Physics: Conference Series</i>. IOP Publishing, 2015. <a href="https://doi.org/10.1088/1742-6596/635/11/112136">https://doi.org/10.1088/1742-6596/635/11/112136</a>.'
  ieee: 'P. M. Kraus <i>et al.</i>, “Attosecond charge migration and its laser control,”
    <i>Journal of Physics: Conference Series</i>, vol. 635, no. 11. IOP Publishing,
    2015.'
  ista: 'Kraus PM, Mignolet B, Baykusheva DR, Rupenyan A, Horný L, Penka EF, Tolstikhin
    OI, Schneider J, Jensen F, Madsen LB, Bandrauk AD, Remacle F, Wörner HJ. 2015.
    Attosecond charge migration and its laser control. Journal of Physics: Conference
    Series. 635(11), 112136.'
  mla: 'Kraus, P. M., et al. “Attosecond Charge Migration and Its Laser Control.”
    <i>Journal of Physics: Conference Series</i>, vol. 635, no. 11, 112136, IOP Publishing,
    2015, doi:<a href="https://doi.org/10.1088/1742-6596/635/11/112136">10.1088/1742-6596/635/11/112136</a>.'
  short: 'P.M. Kraus, B. Mignolet, D.R. Baykusheva, A. Rupenyan, L. Horný, E.F. Penka,
    O.I. Tolstikhin, J. Schneider, F. Jensen, L.B. Madsen, A.D. Bandrauk, F. Remacle,
    H.J. Wörner, Journal of Physics: Conference Series 635 (2015).'
date_created: 2023-08-10T06:37:53Z
date_published: 2015-07-01T00:00:00Z
date_updated: 2023-08-22T08:49:14Z
day: '01'
doi: 10.1088/1742-6596/635/11/112136
extern: '1'
intvolume: '       635'
issue: '11'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1088/1742-6596/635/11/112136
month: '07'
oa: 1
oa_version: Published Version
publication: 'Journal of Physics: Conference Series'
publication_identifier:
  eissn:
  - 1742-6596
  issn:
  - 1742-6588
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Attosecond charge migration and its laser control
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 635
year: '2015'
...
---
_id: '14016'
abstract:
- lang: eng
  text: All attosecond time-resolved measurements have so far relied on the use of
    intense near-infrared laser pulses. In particular, attosecond streaking, laser-induced
    electron diffraction and high-harmonic generation all make use of non-perturbative
    light–matter interactions. Remarkably, the effect of the strong laser field on
    the studied sample has often been neglected in previous studies. Here we use high-harmonic
    spectroscopy to measure laser-induced modifications of the electronic structure
    of molecules. We study high-harmonic spectra of spatially oriented CH3F and CH3Br
    as generic examples of polar polyatomic molecules. We accurately measure intensity
    ratios of even and odd-harmonic orders, and of the emission from aligned and unaligned
    molecules. We show that these robust observables reveal a substantial modification
    of the molecular electronic structure by the external laser field. Our insights
    offer new challenges and opportunities for a range of emerging strong-field attosecond
    spectroscopies.
article_number: '7039'
article_processing_charge: No
article_type: original
author:
- first_name: P. M.
  full_name: Kraus, P. M.
  last_name: Kraus
- first_name: O. I.
  full_name: Tolstikhin, O. I.
  last_name: Tolstikhin
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: A.
  full_name: Rupenyan, A.
  last_name: Rupenyan
- first_name: J.
  full_name: Schneider, J.
  last_name: Schneider
- first_name: C. Z.
  full_name: Bisgaard, C. Z.
  last_name: Bisgaard
- first_name: T.
  full_name: Morishita, T.
  last_name: Morishita
- first_name: F.
  full_name: Jensen, F.
  last_name: Jensen
- first_name: L. B.
  full_name: Madsen, L. B.
  last_name: Madsen
- first_name: H. J.
  full_name: Wörner, H. J.
  last_name: Wörner
citation:
  ama: Kraus PM, Tolstikhin OI, Baykusheva DR, et al. Observation of laser-induced
    electronic structure in oriented polyatomic molecules. <i>Nature Communications</i>.
    2015;6. doi:<a href="https://doi.org/10.1038/ncomms8039">10.1038/ncomms8039</a>
  apa: Kraus, P. M., Tolstikhin, O. I., Baykusheva, D. R., Rupenyan, A., Schneider,
    J., Bisgaard, C. Z., … Wörner, H. J. (2015). Observation of laser-induced electronic
    structure in oriented polyatomic molecules. <i>Nature Communications</i>. Springer
    Nature. <a href="https://doi.org/10.1038/ncomms8039">https://doi.org/10.1038/ncomms8039</a>
  chicago: Kraus, P. M., O. I. Tolstikhin, Denitsa Rangelova Baykusheva, A. Rupenyan,
    J. Schneider, C. Z. Bisgaard, T. Morishita, F. Jensen, L. B. Madsen, and H. J.
    Wörner. “Observation of Laser-Induced Electronic Structure in Oriented Polyatomic
    Molecules.” <i>Nature Communications</i>. Springer Nature, 2015. <a href="https://doi.org/10.1038/ncomms8039">https://doi.org/10.1038/ncomms8039</a>.
  ieee: P. M. Kraus <i>et al.</i>, “Observation of laser-induced electronic structure
    in oriented polyatomic molecules,” <i>Nature Communications</i>, vol. 6. Springer
    Nature, 2015.
  ista: Kraus PM, Tolstikhin OI, Baykusheva DR, Rupenyan A, Schneider J, Bisgaard
    CZ, Morishita T, Jensen F, Madsen LB, Wörner HJ. 2015. Observation of laser-induced
    electronic structure in oriented polyatomic molecules. Nature Communications.
    6, 7039.
  mla: Kraus, P. M., et al. “Observation of Laser-Induced Electronic Structure in
    Oriented Polyatomic Molecules.” <i>Nature Communications</i>, vol. 6, 7039, Springer
    Nature, 2015, doi:<a href="https://doi.org/10.1038/ncomms8039">10.1038/ncomms8039</a>.
  short: P.M. Kraus, O.I. Tolstikhin, D.R. Baykusheva, A. Rupenyan, J. Schneider,
    C.Z. Bisgaard, T. Morishita, F. Jensen, L.B. Madsen, H.J. Wörner, Nature Communications
    6 (2015).
date_created: 2023-08-10T06:38:01Z
date_published: 2015-05-05T00:00:00Z
date_updated: 2023-08-22T08:52:56Z
day: '05'
doi: 10.1038/ncomms8039
extern: '1'
external_id:
  pmid:
  - '25940229'
intvolume: '         6'
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/ncomms8039
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Observation of laser-induced electronic structure in oriented polyatomic molecules
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2015'
...
---
_id: '14017'
abstract:
- lang: eng
  text: The detection of electron motion and electronic wave-packet dynamics is one
    of the core goals of attosecond science. Recently, choosing the nitric oxide molecule
    as an example, we have introduced and demonstrated an experimental approach to
    measure coupled valence electronic and rotational wave packets using high-order-harmonic-generation
    (HHG) spectroscopy [Kraus et al., Phys. Rev. Lett. 111, 243005 (2013)]. A short
    outline of the theory to describe the combination of the pump and HHG probe process
    was published together with an extensive discussion of experimental results [Baykusheva
    et al., Faraday Discuss. 171, 113 (2014)]. The comparison of theory and experiment
    showed good agreement on a quantitative level. Here, we present the theory in
    detail, which is based on a generalized density-matrix approach that describes
    the pump process and the subsequent probing of the wave packets by a semiclassical
    quantitative rescattering approach. An in-depth analysis of the different Raman
    scattering contributions to the creation of the coupled rotational and electronic
    spin-orbit wave packets is made. We present results for parallel and perpendicular
    linear polarizations of the pump and probe laser pulses. Furthermore, an analysis
    of the combined rotational-electronic density matrix in terms of irreducible components
    is presented that facilitates interpretation of the results.
article_number: '023421'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Song Bin
  full_name: Zhang, Song Bin
  last_name: Zhang
- first_name: Denitsa Rangelova
  full_name: Baykusheva, Denitsa Rangelova
  id: 71b4d059-2a03-11ee-914d-dfa3beed6530
  last_name: Baykusheva
- first_name: Peter M.
  full_name: Kraus, Peter M.
  last_name: Kraus
- first_name: Hans Jakob
  full_name: Wörner, Hans Jakob
  last_name: Wörner
- first_name: Nina
  full_name: Rohringer, Nina
  last_name: Rohringer
citation:
  ama: Zhang SB, Baykusheva DR, Kraus PM, Wörner HJ, Rohringer N. Theoretical study
    of molecular electronic and rotational coherences by high-order-harmonic generation.
    <i>Physical Review A</i>. 2015;91(2). doi:<a href="https://doi.org/10.1103/physreva.91.023421">10.1103/physreva.91.023421</a>
  apa: Zhang, S. B., Baykusheva, D. R., Kraus, P. M., Wörner, H. J., &#38; Rohringer,
    N. (2015). Theoretical study of molecular electronic and rotational coherences
    by high-order-harmonic generation. <i>Physical Review A</i>. American Physical
    Society. <a href="https://doi.org/10.1103/physreva.91.023421">https://doi.org/10.1103/physreva.91.023421</a>
  chicago: Zhang, Song Bin, Denitsa Rangelova Baykusheva, Peter M. Kraus, Hans Jakob
    Wörner, and Nina Rohringer. “Theoretical Study of Molecular Electronic and Rotational
    Coherences by High-Order-Harmonic Generation.” <i>Physical Review A</i>. American
    Physical Society, 2015. <a href="https://doi.org/10.1103/physreva.91.023421">https://doi.org/10.1103/physreva.91.023421</a>.
  ieee: S. B. Zhang, D. R. Baykusheva, P. M. Kraus, H. J. Wörner, and N. Rohringer,
    “Theoretical study of molecular electronic and rotational coherences by high-order-harmonic
    generation,” <i>Physical Review A</i>, vol. 91, no. 2. American Physical Society,
    2015.
  ista: Zhang SB, Baykusheva DR, Kraus PM, Wörner HJ, Rohringer N. 2015. Theoretical
    study of molecular electronic and rotational coherences by high-order-harmonic
    generation. Physical Review A. 91(2), 023421.
  mla: Zhang, Song Bin, et al. “Theoretical Study of Molecular Electronic and Rotational
    Coherences by High-Order-Harmonic Generation.” <i>Physical Review A</i>, vol.
    91, no. 2, 023421, American Physical Society, 2015, doi:<a href="https://doi.org/10.1103/physreva.91.023421">10.1103/physreva.91.023421</a>.
  short: S.B. Zhang, D.R. Baykusheva, P.M. Kraus, H.J. Wörner, N. Rohringer, Physical
    Review A 91 (2015).
date_created: 2023-08-10T06:38:10Z
date_published: 2015-02-19T00:00:00Z
date_updated: 2023-08-22T08:56:34Z
day: '19'
doi: 10.1103/physreva.91.023421
extern: '1'
external_id:
  arxiv:
  - '1504.03933'
intvolume: '        91'
issue: '2'
keyword:
- Atomic and Molecular Physics
- and Optics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1504.03933
month: '02'
oa: 1
oa_version: Preprint
publication: Physical Review A
publication_identifier:
  eissn:
  - 1094-1622
  issn:
  - 1050-2947
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Theoretical study of molecular electronic and rotational coherences by high-order-harmonic
  generation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 91
year: '2015'
...
---
_id: '1424'
abstract:
- lang: eng
  text: We consider the problem of statistical computations with persistence diagrams,
    a summary representation of topological features in data. These diagrams encode
    persistent homology, a widely used invariant in topological data analysis. While
    several avenues towards a statistical treatment of the diagrams have been explored
    recently, we follow an alternative route that is motivated by the success of methods
    based on the embedding of probability measures into reproducing kernel Hilbert
    spaces. In fact, a positive definite kernel on persistence diagrams has recently
    been proposed, connecting persistent homology to popular kernel-based learning
    techniques such as support vector machines. However, important properties of that
    kernel enabling a principled use in the context of probability measure embeddings
    remain to be explored. Our contribution is to close this gap by proving universality
    of a variant of the original kernel, and to demonstrate its effective use in twosample
    hypothesis testing on synthetic as well as real-world data.
acknowledgement: This work was partially supported by the Austrian Science FUnd, project
  no. KLI 00012.
alternative_title:
- Advances in Neural Information Processing Systems
author:
- first_name: Roland
  full_name: Kwitt, Roland
  last_name: Kwitt
- first_name: Stefan
  full_name: Huber, Stefan
  id: 4700A070-F248-11E8-B48F-1D18A9856A87
  last_name: Huber
  orcid: 0000-0002-8871-5814
- first_name: Marc
  full_name: Niethammer, Marc
  last_name: Niethammer
- first_name: Weili
  full_name: Lin, Weili
  last_name: Lin
- first_name: Ulrich
  full_name: Bauer, Ulrich
  id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
  orcid: 0000-0002-9683-0724
citation:
  ama: 'Kwitt R, Huber S, Niethammer M, Lin W, Bauer U. Statistical topological data
    analysis-A kernel perspective. In: Vol 28. Neural Information Processing Systems;
    2015:3070-3078.'
  apa: 'Kwitt, R., Huber, S., Niethammer, M., Lin, W., &#38; Bauer, U. (2015). Statistical
    topological data analysis-A kernel perspective (Vol. 28, pp. 3070–3078). Presented
    at the NIPS: Neural Information Processing Systems, Montreal, Canada: Neural Information
    Processing Systems.'
  chicago: Kwitt, Roland, Stefan Huber, Marc Niethammer, Weili Lin, and Ulrich Bauer.
    “Statistical Topological Data Analysis-A Kernel Perspective,” 28:3070–78. Neural
    Information Processing Systems, 2015.
  ieee: 'R. Kwitt, S. Huber, M. Niethammer, W. Lin, and U. Bauer, “Statistical topological
    data analysis-A kernel perspective,” presented at the NIPS: Neural Information
    Processing Systems, Montreal, Canada, 2015, vol. 28, pp. 3070–3078.'
  ista: 'Kwitt R, Huber S, Niethammer M, Lin W, Bauer U. 2015. Statistical topological
    data analysis-A kernel perspective. NIPS: Neural Information Processing Systems,
    Advances in Neural Information Processing Systems, vol. 28, 3070–3078.'
  mla: Kwitt, Roland, et al. <i>Statistical Topological Data Analysis-A Kernel Perspective</i>.
    Vol. 28, Neural Information Processing Systems, 2015, pp. 3070–78.
  short: R. Kwitt, S. Huber, M. Niethammer, W. Lin, U. Bauer, in:, Neural Information
    Processing Systems, 2015, pp. 3070–3078.
conference:
  end_date: 2015-12-12
  location: Montreal, Canada
  name: 'NIPS: Neural Information Processing Systems'
  start_date: 2015-12-07
date_created: 2018-12-11T11:51:56Z
date_published: 2015-12-01T00:00:00Z
date_updated: 2021-01-12T06:50:38Z
day: '01'
department:
- _id: HeEd
intvolume: '        28'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://papers.nips.cc/paper/5887-statistical-topological-data-analysis-a-kernel-perspective
month: '12'
oa: 1
oa_version: Submitted Version
page: 3070 - 3078
publication_status: published
publisher: Neural Information Processing Systems
publist_id: '5782'
quality_controlled: '1'
status: public
title: Statistical topological data analysis-A kernel perspective
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2015'
...
---
_id: '1425'
abstract:
- lang: eng
  text: 'In this work we aim at extending the theoretical foundations of lifelong
    learning. Previous work analyzing this scenario is based on the assumption that
    learning tasks are sampled i.i.d. from a task environment or limited to strongly
    constrained data distributions. Instead, we study two scenarios when lifelong
    learning is possible, even though the observed tasks do not form an i.i.d. sample:
    first, when they are sampled from the same environment, but possibly with dependencies,
    and second, when the task environment is allowed to change over time in a consistent
    way. In the first case we prove a PAC-Bayesian theorem that can be seen as a direct
    generalization of the analogous previous result for the i.i.d. case. For the second
    scenario we propose to learn an inductive bias in form of a transfer procedure.
    We present a generalization bound and show on a toy example how it can be used
    to identify a beneficial transfer algorithm.'
alternative_title:
- Advances in Neural Information Processing Systems
author:
- first_name: Anastasia
  full_name: Pentina, Anastasia
  id: 42E87FC6-F248-11E8-B48F-1D18A9856A87
  last_name: Pentina
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Pentina A, Lampert C. Lifelong learning with non-i.i.d. tasks. In: Vol 2015.
    Neural Information Processing Systems; 2015:1540-1548.'
  apa: 'Pentina, A., &#38; Lampert, C. (2015). Lifelong learning with non-i.i.d. tasks
    (Vol. 2015, pp. 1540–1548). Presented at the NIPS: Neural Information Processing
    Systems, Montreal, Canada: Neural Information Processing Systems.'
  chicago: Pentina, Anastasia, and Christoph Lampert. “Lifelong Learning with Non-i.i.d.
    Tasks,” 2015:1540–48. Neural Information Processing Systems, 2015.
  ieee: 'A. Pentina and C. Lampert, “Lifelong learning with non-i.i.d. tasks,” presented
    at the NIPS: Neural Information Processing Systems, Montreal, Canada, 2015, vol.
    2015, pp. 1540–1548.'
  ista: 'Pentina A, Lampert C. 2015. Lifelong learning with non-i.i.d. tasks. NIPS:
    Neural Information Processing Systems, Advances in Neural Information Processing
    Systems, vol. 2015, 1540–1548.'
  mla: Pentina, Anastasia, and Christoph Lampert. <i>Lifelong Learning with Non-i.i.d.
    Tasks</i>. Vol. 2015, Neural Information Processing Systems, 2015, pp. 1540–48.
  short: A. Pentina, C. Lampert, in:, Neural Information Processing Systems, 2015,
    pp. 1540–1548.
conference:
  end_date: 2015-12-12
  location: Montreal, Canada
  name: 'NIPS: Neural Information Processing Systems'
  start_date: 2015-12-07
date_created: 2018-12-11T11:51:57Z
date_published: 2015-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:39Z
day: '01'
department:
- _id: ChLa
ec_funded: 1
intvolume: '      2015'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://papers.nips.cc/paper/6007-lifelong-learning-with-non-iid-tasks
month: '01'
oa: 1
oa_version: None
page: 1540 - 1548
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication_status: published
publisher: Neural Information Processing Systems
publist_id: '5781'
quality_controlled: '1'
scopus_import: 1
status: public
title: Lifelong learning with non-i.i.d. tasks
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2015
year: '2015'
...
---
_id: '1430'
abstract:
- lang: eng
  text: Evolutionary algorithms (EAs) form a popular optimisation paradigm inspired
    by natural evolution. In recent years the field of evolutionary computation has
    developed a rigorous analytical theory to analyse their runtime on many illustrative
    problems. Here we apply this theory to a simple model of natural evolution. In
    the Strong Selection Weak Mutation (SSWM) evolutionary regime the time between
    occurrence of new mutations is much longer than the time it takes for a new beneficial
    mutation to take over the population. In this situation, the population only contains
    copies of one genotype and evolution can be modelled as a (1+1)-type process where
    the probability of accepting a new genotype (improvements or worsenings) depends
    on the change in fitness. We present an initial runtime analysis of SSWM, quantifying
    its performance for various parameters and investigating differences to the (1+1)
    EA. We show that SSWM can have a moderate advantage over the (1+1) EA at crossing
    fitness valleys and study an example where SSWM outperforms the (1+1) EA by taking
    advantage of information on the fitness gradient.
author:
- first_name: Tiago
  full_name: Paixao, Tiago
  id: 2C5658E6-F248-11E8-B48F-1D18A9856A87
  last_name: Paixao
  orcid: 0000-0003-2361-3953
- first_name: Dirk
  full_name: Sudholt, Dirk
  last_name: Sudholt
- first_name: Jorge
  full_name: Heredia, Jorge
  last_name: Heredia
- first_name: Barbora
  full_name: Trubenova, Barbora
  id: 42302D54-F248-11E8-B48F-1D18A9856A87
  last_name: Trubenova
  orcid: 0000-0002-6873-2967
citation:
  ama: 'Paixao T, Sudholt D, Heredia J, Trubenova B. First steps towards a runtime
    comparison of natural and artificial evolution. In: <i>Proceedings of the 2015
    Annual Conference on Genetic and Evolutionary Computation</i>. ACM; 2015:1455-1462.
    doi:<a href="https://doi.org/10.1145/2739480.2754758">10.1145/2739480.2754758</a>'
  apa: 'Paixao, T., Sudholt, D., Heredia, J., &#38; Trubenova, B. (2015). First steps
    towards a runtime comparison of natural and artificial evolution. In <i>Proceedings
    of the 2015 Annual Conference on Genetic and Evolutionary Computation</i> (pp.
    1455–1462). Madrid, Spain: ACM. <a href="https://doi.org/10.1145/2739480.2754758">https://doi.org/10.1145/2739480.2754758</a>'
  chicago: Paixao, Tiago, Dirk Sudholt, Jorge Heredia, and Barbora Trubenova. “First
    Steps towards a Runtime Comparison of Natural and Artificial Evolution.” In <i>Proceedings
    of the 2015 Annual Conference on Genetic and Evolutionary Computation</i>, 1455–62.
    ACM, 2015. <a href="https://doi.org/10.1145/2739480.2754758">https://doi.org/10.1145/2739480.2754758</a>.
  ieee: T. Paixao, D. Sudholt, J. Heredia, and B. Trubenova, “First steps towards
    a runtime comparison of natural and artificial evolution,” in <i>Proceedings of
    the 2015 Annual Conference on Genetic and Evolutionary Computation</i>, Madrid,
    Spain, 2015, pp. 1455–1462.
  ista: 'Paixao T, Sudholt D, Heredia J, Trubenova B. 2015. First steps towards a
    runtime comparison of natural and artificial evolution. Proceedings of the 2015
    Annual Conference on Genetic and Evolutionary Computation. GECCO: Genetic and
    evolutionary computation conference, 1455–1462.'
  mla: Paixao, Tiago, et al. “First Steps towards a Runtime Comparison of Natural
    and Artificial Evolution.” <i>Proceedings of the 2015 Annual Conference on Genetic
    and Evolutionary Computation</i>, ACM, 2015, pp. 1455–62, doi:<a href="https://doi.org/10.1145/2739480.2754758">10.1145/2739480.2754758</a>.
  short: T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the
    2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp.
    1455–1462.
conference:
  end_date: 2015-07-15
  location: Madrid, Spain
  name: 'GECCO: Genetic and evolutionary computation conference'
  start_date: 2015-07-11
date_created: 2018-12-11T11:51:58Z
date_published: 2015-07-11T00:00:00Z
date_updated: 2021-01-12T06:50:41Z
day: '11'
department:
- _id: NiBa
- _id: CaGu
doi: 10.1145/2739480.2754758
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1504.06260
month: '07'
oa: 1
oa_version: Preprint
page: 1455 - 1462
project:
- _id: 25B1EC9E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618091'
  name: Speed of Adaptation in Population Genetics and Evolutionary Computation
publication: Proceedings of the 2015 Annual Conference on Genetic and Evolutionary
  Computation
publication_status: published
publisher: ACM
publist_id: '5768'
quality_controlled: '1'
scopus_import: 1
status: public
title: First steps towards a runtime comparison of natural and artificial evolution
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '14303'
abstract:
- lang: eng
  text: Scaffolded DNA origami enables the fabrication of a variety of complex nanostructures
    that promise utility in diverse fields of application, ranging from biosensing
    over advanced therapeutics to metamaterials. The broad applicability of DNA origami
    as a material beyond the level of proof-of-concept studies critically depends,
    among other factors, on the availability of large amounts of pure single-stranded
    scaffold DNA. Here, we present a method for the efficient production of M13 bacteriophage-derived
    genomic DNA using high-cell-density fermentation of Escherichia coli in stirred-tank
    bioreactors. We achieve phage titers of up to 1.6 × 1014 plaque-forming units
    per mL. Downstream processing yields up to 410 mg of high-quality single-stranded
    DNA per one liter reaction volume, thus upgrading DNA origami-based nanotechnology
    from the milligram to the gram scale.
article_processing_charge: No
article_type: letter_note
author:
- first_name: B
  full_name: Kick, B
  last_name: Kick
- first_name: Florian M
  full_name: Praetorius, Florian M
  id: dfec9381-4341-11ee-8fd8-faa02bba7d62
  last_name: Praetorius
- first_name: H
  full_name: Dietz, H
  last_name: Dietz
- first_name: D
  full_name: Weuster-Botz, D
  last_name: Weuster-Botz
citation:
  ama: Kick B, Praetorius FM, Dietz H, Weuster-Botz D. Efficient production of single-stranded
    phage DNA as scaffolds for DNA origami. <i>Nano Letters</i>. 2015;15(7):4672-4676.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.5b01461">10.1021/acs.nanolett.5b01461</a>
  apa: Kick, B., Praetorius, F. M., Dietz, H., &#38; Weuster-Botz, D. (2015). Efficient
    production of single-stranded phage DNA as scaffolds for DNA origami. <i>Nano
    Letters</i>. ACS Publications. <a href="https://doi.org/10.1021/acs.nanolett.5b01461">https://doi.org/10.1021/acs.nanolett.5b01461</a>
  chicago: Kick, B, Florian M Praetorius, H Dietz, and D Weuster-Botz. “Efficient
    Production of Single-Stranded Phage DNA as Scaffolds for DNA Origami.” <i>Nano
    Letters</i>. ACS Publications, 2015. <a href="https://doi.org/10.1021/acs.nanolett.5b01461">https://doi.org/10.1021/acs.nanolett.5b01461</a>.
  ieee: B. Kick, F. M. Praetorius, H. Dietz, and D. Weuster-Botz, “Efficient production
    of single-stranded phage DNA as scaffolds for DNA origami,” <i>Nano Letters</i>,
    vol. 15, no. 7. ACS Publications, pp. 4672–4676, 2015.
  ista: Kick B, Praetorius FM, Dietz H, Weuster-Botz D. 2015. Efficient production
    of single-stranded phage DNA as scaffolds for DNA origami. Nano Letters. 15(7),
    4672–4676.
  mla: Kick, B., et al. “Efficient Production of Single-Stranded Phage DNA as Scaffolds
    for DNA Origami.” <i>Nano Letters</i>, vol. 15, no. 7, ACS Publications, 2015,
    pp. 4672–76, doi:<a href="https://doi.org/10.1021/acs.nanolett.5b01461">10.1021/acs.nanolett.5b01461</a>.
  short: B. Kick, F.M. Praetorius, H. Dietz, D. Weuster-Botz, Nano Letters 15 (2015)
    4672–4676.
date_created: 2023-09-06T12:52:47Z
date_published: 2015-06-01T00:00:00Z
date_updated: 2023-11-07T11:56:32Z
day: '01'
doi: 10.1021/acs.nanolett.5b01461
extern: '1'
external_id:
  pmid:
  - '26028443'
intvolume: '        15'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1021/acs.nanolett.5b01461
month: '06'
oa: 1
oa_version: Published Version
page: 4672-4676
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: ACS Publications
quality_controlled: '1'
status: public
title: Efficient production of single-stranded phage DNA as scaffolds for DNA origami
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2015'
...
---
_id: '1473'
abstract:
- lang: eng
  text: In this paper we survey geometric and arithmetic techniques to study the cohomology
    of semiprojective hyperkähler manifolds including toric hyperkähler varieties,
    Nakajima quiver varieties and moduli spaces of Higgs bundles on Riemann surfaces.
    The resulting formulae for their Poincaré polynomials are combinatorial and representation
    theoretical in nature. In particular we will look at their Betti numbers and will
    establish some results and state some expectations on their asymptotic shape.
author:
- first_name: Tamas
  full_name: Tamas Hausel
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Fernando
  full_name: Rodríguez Villegas, Fernando
  last_name: Rodríguez Villegas
citation:
  ama: Hausel T, Rodríguez Villegas F. Cohomology of large semiprojective hyperkähler
    varieties. <i>Asterisque</i>. 2015;2015(370):113-156.
  apa: Hausel, T., &#38; Rodríguez Villegas, F. (2015). Cohomology of large semiprojective
    hyperkähler varieties. <i>Asterisque</i>. Societe Mathematique de France.
  chicago: Hausel, Tamás, and Fernando Rodríguez Villegas. “Cohomology of Large Semiprojective
    Hyperkähler Varieties.” <i>Asterisque</i>. Societe Mathematique de France, 2015.
  ieee: T. Hausel and F. Rodríguez Villegas, “Cohomology of large semiprojective hyperkähler
    varieties,” <i>Asterisque</i>, vol. 2015, no. 370. Societe Mathematique de France,
    pp. 113–156, 2015.
  ista: Hausel T, Rodríguez Villegas F. 2015. Cohomology of large semiprojective hyperkähler
    varieties. Asterisque. 2015(370), 113–156.
  mla: Hausel, Tamás, and Fernando Rodríguez Villegas. “Cohomology of Large Semiprojective
    Hyperkähler Varieties.” <i>Asterisque</i>, vol. 2015, no. 370, Societe Mathematique
    de France, 2015, pp. 113–56.
  short: T. Hausel, F. Rodríguez Villegas, Asterisque 2015 (2015) 113–156.
date_created: 2018-12-11T11:52:13Z
date_published: 2015-01-01T00:00:00Z
date_updated: 2021-01-12T06:50:59Z
day: '01'
extern: 1
intvolume: '      2015'
issue: '370'
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1309.4914
month: '01'
oa: 1
page: 113 - 156
publication: Asterisque
publication_status: published
publisher: Societe Mathematique de France
publist_id: '5723'
quality_controlled: 0
status: public
title: Cohomology of large semiprojective hyperkähler varieties
type: review
volume: 2015
year: '2015'
...
---
_id: '1474'
abstract:
- lang: eng
  text: Cryptographic access control offers selective access to encrypted data via
    a combination of key management and functionality-rich cryptographic schemes,
    such as attribute-based encryption. Using this approach, publicly available meta-data
    may inadvertently leak information on the access policy that is enforced by cryptography,
    which renders cryptographic access control unusable in settings where this information
    is highly sensitive. We begin to address this problem by presenting rigorous definitions
    for policy privacy in cryptographic access control. For concreteness we set our
    results in the model of Role-Based Access Control (RBAC), where we identify and
    formalize several different flavors of privacy, however, our framework should
    serve as inspiration for other models of access control. Based on our insights
    we propose a new system which significantly improves on the privacy properties
    of state-of-the-art constructions. Our design is based on a novel type of privacy-preserving
    attribute-based encryption, which we introduce and show how to instantiate. We
    present our results in the context of a cryptographic RBAC system by Ferrara et
    al. (CSF'13), which uses cryptography to control read access to files, while write
    access is still delegated to trusted monitors. We give an extension of the construction
    that permits cryptographic control over write access. Our construction assumes
    that key management uses out-of-band channels between the policy enforcer and
    the users but eliminates completely the need for monitoring read/write access
    to the data.
article_processing_charge: No
author:
- first_name: Anna
  full_name: Ferrara, Anna
  last_name: Ferrara
- first_name: Georg
  full_name: Fuchsbauer, Georg
  id: 46B4C3EE-F248-11E8-B48F-1D18A9856A87
  last_name: Fuchsbauer
- first_name: Bin
  full_name: Liu, Bin
  last_name: Liu
- first_name: Bogdan
  full_name: Warinschi, Bogdan
  last_name: Warinschi
citation:
  ama: 'Ferrara A, Fuchsbauer G, Liu B, Warinschi B. Policy privacy in cryptographic
    access control. In: IEEE; 2015:46-60. doi:<a href="https://doi.org/10.1109/CSF.2015.11">10.1109/CSF.2015.11</a>'
  apa: 'Ferrara, A., Fuchsbauer, G., Liu, B., &#38; Warinschi, B. (2015). Policy privacy
    in cryptographic access control (pp. 46–60). Presented at the CSF: Computer Security
    Foundations, Verona, Italy: IEEE. <a href="https://doi.org/10.1109/CSF.2015.11">https://doi.org/10.1109/CSF.2015.11</a>'
  chicago: Ferrara, Anna, Georg Fuchsbauer, Bin Liu, and Bogdan Warinschi. “Policy
    Privacy in Cryptographic Access Control,” 46–60. IEEE, 2015. <a href="https://doi.org/10.1109/CSF.2015.11">https://doi.org/10.1109/CSF.2015.11</a>.
  ieee: 'A. Ferrara, G. Fuchsbauer, B. Liu, and B. Warinschi, “Policy privacy in cryptographic
    access control,” presented at the CSF: Computer Security Foundations, Verona,
    Italy, 2015, pp. 46–60.'
  ista: 'Ferrara A, Fuchsbauer G, Liu B, Warinschi B. 2015. Policy privacy in cryptographic
    access control. CSF: Computer Security Foundations, 46–60.'
  mla: Ferrara, Anna, et al. <i>Policy Privacy in Cryptographic Access Control</i>.
    IEEE, 2015, pp. 46–60, doi:<a href="https://doi.org/10.1109/CSF.2015.11">10.1109/CSF.2015.11</a>.
  short: A. Ferrara, G. Fuchsbauer, B. Liu, B. Warinschi, in:, IEEE, 2015, pp. 46–60.
conference:
  end_date: 2015-07-17
  location: Verona, Italy
  name: 'CSF: Computer Security Foundations'
  start_date: 2015-07-13
date_created: 2018-12-11T11:52:14Z
date_published: 2015-09-04T00:00:00Z
date_updated: 2021-01-12T06:50:59Z
day: '04'
department:
- _id: KrPi
doi: 10.1109/CSF.2015.11
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://epubs.surrey.ac.uk/808055/
month: '09'
oa: 1
oa_version: Submitted Version
page: 46-60
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '259668'
  name: Provable Security for Physical Cryptography
publication_status: published
publisher: IEEE
publist_id: '5722'
quality_controlled: '1'
status: public
title: Policy privacy in cryptographic access control
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5429'
abstract:
- lang: eng
  text: "We consider Markov decision processes (MDPs) with multiple limit-average
    (or mean-payoff) objectives. \r\nThere have been two different views: (i) the
    expectation semantics, where the goal is to optimize the expected mean-payoff
    objective, and (ii) the satisfaction semantics, where the goal is to maximize
    the probability of runs such that the mean-payoff value stays above a given vector.
    \ \r\nWe consider the problem where the goal is to optimize the expectation under
    the constraint that the satisfaction semantics is ensured, and thus consider a
    generalization that unifies the existing semantics.\r\nOur problem captures the
    notion of optimization with respect to strategies that are risk-averse (i.e.,
    ensures certain probabilistic guarantee).\r\nOur main results are algorithms for
    the decision problem which are always polynomial in the size of the MDP. We also
    show that an approximation of the Pareto-curve can be computed in time polynomial
    in the size of the MDP, and the approximation factor, but exponential in the number
    of dimensions.\r\nFinally, we present a complete characterization of the strategy
    complexity (in terms of memory bounds and randomization) required to solve our
    problem."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Zuzana
  full_name: Komarkova, Zuzana
  last_name: Komarkova
- first_name: Jan
  full_name: Kretinsky, Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
  orcid: 0000-0002-8122-2881
citation:
  ama: Chatterjee K, Komarkova Z, Kretinsky J. <i>Unifying Two Views on Multiple Mean-Payoff
    Objectives in Markov Decision Processes</i>. IST Austria; 2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-318-v1-1">10.15479/AT:IST-2015-318-v1-1</a>
  apa: Chatterjee, K., Komarkova, Z., &#38; Kretinsky, J. (2015). <i>Unifying two
    views on multiple mean-payoff objectives in Markov decision processes</i>. IST
    Austria. <a href="https://doi.org/10.15479/AT:IST-2015-318-v1-1">https://doi.org/10.15479/AT:IST-2015-318-v1-1</a>
  chicago: Chatterjee, Krishnendu, Zuzana Komarkova, and Jan Kretinsky. <i>Unifying
    Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes</i>.
    IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-318-v1-1">https://doi.org/10.15479/AT:IST-2015-318-v1-1</a>.
  ieee: K. Chatterjee, Z. Komarkova, and J. Kretinsky, <i>Unifying two views on multiple
    mean-payoff objectives in Markov decision processes</i>. IST Austria, 2015.
  ista: Chatterjee K, Komarkova Z, Kretinsky J. 2015. Unifying two views on multiple
    mean-payoff objectives in Markov decision processes, IST Austria, 41p.
  mla: Chatterjee, Krishnendu, et al. <i>Unifying Two Views on Multiple Mean-Payoff
    Objectives in Markov Decision Processes</i>. IST Austria, 2015, doi:<a href="https://doi.org/10.15479/AT:IST-2015-318-v1-1">10.15479/AT:IST-2015-318-v1-1</a>.
  short: K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple
    Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
date_created: 2018-12-12T11:39:17Z
date_published: 2015-01-12T00:00:00Z
date_updated: 2023-02-23T12:26:16Z
day: '12'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2015-318-v1-1
file:
- access_level: open_access
  checksum: e4869a584567c506349abda9c8ec7db3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:11Z
  date_updated: 2020-07-14T12:46:52Z
  file_id: '5533'
  file_name: IST-2015-318-v1+1_main.pdf
  file_size: 689863
  relation: main_file
file_date_updated: 2020-07-14T12:46:52Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: '41'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '318'
related_material:
  record:
  - id: '1657'
    relation: later_version
    status: public
  - id: '466'
    relation: later_version
    status: public
  - id: '5435'
    relation: later_version
    status: public
status: public
title: Unifying two views on multiple mean-payoff objectives in Markov decision processes
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5430'
abstract:
- lang: eng
  text: We consider the core algorithmic problems related to verification of systems
    with respect to three classical quantitative properties, namely, the mean- payoff
    property, the ratio property, and the minimum initial credit for energy property.
    The algorithmic problem given a graph and a quantitative property asks to compute
    the optimal value (the infimum value over all traces) from every node of the graph.
    We consider graphs with constant treewidth, and it is well-known that the control-flow
    graphs of most programs have constant treewidth. Let n denote the number of nodes
    of a graph, m the number of edges (for constant treewidth graphs m = O ( n ) )
    and W the largest absolute value of the weights. Our main theoretical results
    are as follows. First, for constant treewidth graphs we present an algorithm that
    approximates the mean-payoff value within a mul- tiplicative factor of ∊ in time
    O ( n · log( n/∊ )) and linear space, as compared to the classical algorithms
    that require quadratic time. Second, for the ratio property we present an algorithm
    that for constant treewidth graphs works in time O ( n · log( | a · b · n | ))
    = O ( n · log( n · W )) , when the output is a b , as compared to the previously
    best known algorithm with running time O ( n 2 · log( n · W )) . Third, for the
    minimum initial credit problem we show that (i) for general graphs the problem
    can be solved in O ( n 2 · m ) time and the associated decision problem can be
    solved in O ( n · m ) time, improving the previous known O ( n 3 · m · log( n
    · W )) and O ( n 2 · m ) bounds, respectively; and (ii) for constant treewidth
    graphs we present an algorithm that requires O ( n · log n ) time, improving the
    previous known O ( n 4 · log( n · W )) bound. We have implemented some of our
    algorithms and show that they present a significant speedup on standard benchmarks.
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
citation:
  ama: Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. <i>Faster Algorithms for Quantitative
    Verification in Constant Treewidth Graphs</i>. IST Austria; 2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-319-v1-1">10.15479/AT:IST-2015-319-v1-1</a>
  apa: Chatterjee, K., Ibsen-Jensen, R., &#38; Pavlogiannis, A. (2015). <i>Faster
    algorithms for quantitative verification in constant treewidth graphs</i>. IST
    Austria. <a href="https://doi.org/10.15479/AT:IST-2015-319-v1-1">https://doi.org/10.15479/AT:IST-2015-319-v1-1</a>
  chicago: Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Andreas Pavlogiannis.
    <i>Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs</i>.
    IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-319-v1-1">https://doi.org/10.15479/AT:IST-2015-319-v1-1</a>.
  ieee: K. Chatterjee, R. Ibsen-Jensen, and A. Pavlogiannis, <i>Faster algorithms
    for quantitative verification in constant treewidth graphs</i>. IST Austria, 2015.
  ista: Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. 2015. Faster algorithms for
    quantitative verification in constant treewidth graphs, IST Austria, 31p.
  mla: Chatterjee, Krishnendu, et al. <i>Faster Algorithms for Quantitative Verification
    in Constant Treewidth Graphs</i>. IST Austria, 2015, doi:<a href="https://doi.org/10.15479/AT:IST-2015-319-v1-1">10.15479/AT:IST-2015-319-v1-1</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Faster Algorithms for Quantitative
    Verification in Constant Treewidth Graphs, IST Austria, 2015.
date_created: 2018-12-12T11:39:17Z
date_published: 2015-02-10T00:00:00Z
date_updated: 2023-02-23T12:26:22Z
day: '10'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2015-319-v1-1
file:
- access_level: open_access
  checksum: 62c6ea01e342553dcafb88a070fb1ad5
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:21Z
  date_updated: 2020-07-14T12:46:52Z
  file_id: '5482'
  file_name: IST-2015-319-v1+1_long.pdf
  file_size: 1089651
  relation: main_file
file_date_updated: 2020-07-14T12:46:52Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '31'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '319'
related_material:
  record:
  - id: '1607'
    relation: later_version
    status: public
  - id: '5437'
    relation: later_version
    status: public
status: public
title: Faster algorithms for quantitative verification in constant treewidth graphs
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5431'
abstract:
- lang: eng
  text: "We consider finite-state concurrent stochastic games, played by k>=2 players
    for an infinite number of rounds, where in every round, each player simultaneously
    and independently of the other players chooses an action, whereafter the successor
    state is determined by a probability distribution given by the current state and
    the chosen actions. We consider reachability objectives that given a target set
    of states require that some state in the target set is visited, and the dual safety
    objectives that given a target set require that only states in the target set
    are visited. We are interested in the complexity of stationary strategies measured
    by their patience, which is defined as the inverse of the smallest non-zero probability
    employed.\r\n\r\n Our main results are as follows: We show that in two-player
    zero-sum concurrent stochastic games (with reachability objective for one player
    and the complementary safety objective for the other player): (i) the optimal
    bound on the patience of optimal and epsilon-optimal strategies, for both players
    is doubly exponential; and (ii) even in games with a single non-absorbing state
    exponential (in the number of actions) patience is necessary. In general we study
    the class of non-zero-sum games admitting epsilon-Nash equilibria. We show that
    if there is at least one player with reachability objective, then doubly-exponential
    patience is needed in general for epsilon-Nash equilibrium strategies, whereas
    in contrast if all players have safety objectives, then the optimal bound on patience
    for epsilon-Nash equilibrium strategies is only exponential."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
- first_name: Kristoffer
  full_name: Hansen, Kristoffer
  last_name: Hansen
citation:
  ama: Chatterjee K, Ibsen-Jensen R, Hansen K. <i>The Patience of Concurrent Stochastic
    Games with Safety and Reachability Objectives</i>. IST Austria; 2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-322-v1-1">10.15479/AT:IST-2015-322-v1-1</a>
  apa: Chatterjee, K., Ibsen-Jensen, R., &#38; Hansen, K. (2015). <i>The patience
    of concurrent stochastic games with safety and reachability objectives</i>. IST
    Austria. <a href="https://doi.org/10.15479/AT:IST-2015-322-v1-1">https://doi.org/10.15479/AT:IST-2015-322-v1-1</a>
  chicago: Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Kristoffer Hansen. <i>The
    Patience of Concurrent Stochastic Games with Safety and Reachability Objectives</i>.
    IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-322-v1-1">https://doi.org/10.15479/AT:IST-2015-322-v1-1</a>.
  ieee: K. Chatterjee, R. Ibsen-Jensen, and K. Hansen, <i>The patience of concurrent
    stochastic games with safety and reachability objectives</i>. IST Austria, 2015.
  ista: Chatterjee K, Ibsen-Jensen R, Hansen K. 2015. The patience of concurrent stochastic
    games with safety and reachability objectives, IST Austria, 25p.
  mla: Chatterjee, Krishnendu, et al. <i>The Patience of Concurrent Stochastic Games
    with Safety and Reachability Objectives</i>. IST Austria, 2015, doi:<a href="https://doi.org/10.15479/AT:IST-2015-322-v1-1">10.15479/AT:IST-2015-322-v1-1</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, K. Hansen, The Patience of Concurrent Stochastic
    Games with Safety and Reachability Objectives, IST Austria, 2015.
date_created: 2018-12-12T11:39:17Z
date_published: 2015-02-19T00:00:00Z
date_updated: 2021-01-12T08:02:13Z
day: '19'
ddc:
- '005'
- '519'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2015-322-v1-1
file:
- access_level: open_access
  checksum: bfb858262c30445b8e472c40069178a2
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:31Z
  date_updated: 2020-07-14T12:46:53Z
  file_id: '5491'
  file_name: IST-2015-322-v1+1_safetygames.pdf
  file_size: 661015
  relation: main_file
file_date_updated: 2020-07-14T12:46:53Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '25'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '322'
status: public
title: The patience of concurrent stochastic games with safety and reachability objectives
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5432'
abstract:
- lang: eng
  text: "Evolution occurs in populations of reproducing individuals. The structure
    of the population affects the outcome of the evolutionary process. Evolutionary
    graph theory is a powerful approach to study this phenomenon. There are two graphs.
    The interaction graph specifies who interacts with whom in the context of evolution.The
    replacement graph specifies who competes with whom for reproduction. \r\nThe vertices
    of the two graphs are the same, and each vertex corresponds to an individual of
    the population. A key quantity is the fixation probability of a new mutant. It
    is defined as the probability that a newly introduced mutant (on a single vertex)
    generates a lineage of offspring which eventually takes over the entire population
    of resident individuals. The basic computational questions are as follows: (i)
    the qualitative question asks whether the fixation probability is positive; and
    (ii) the quantitative approximation question asks for an approximation of the
    fixation probability. \r\nOur main results are:\r\n(1) We show that the qualitative
    question is NP-complete and the quantitative approximation question is #P-hard
    in the special case when the interaction and the replacement graphs coincide and
    even with the restriction that the resident individuals do not reproduce (which
    corresponds to an invading population taking over an empty structure).\r\n(2)
    We show that in general the qualitative question is PSPACE-complete and the quantitative
    approximation question is PSPACE-hard and can be solved in exponential time.\r\n"
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Chatterjee K, Ibsen-Jensen R, Nowak M. <i>The Complexity of Evolutionary Games
    on Graphs</i>. IST Austria; 2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-323-v1-1">10.15479/AT:IST-2015-323-v1-1</a>
  apa: Chatterjee, K., Ibsen-Jensen, R., &#38; Nowak, M. (2015). <i>The complexity
    of evolutionary games on graphs</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2015-323-v1-1">https://doi.org/10.15479/AT:IST-2015-323-v1-1</a>
  chicago: Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Martin Nowak. <i>The Complexity
    of Evolutionary Games on Graphs</i>. IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-323-v1-1">https://doi.org/10.15479/AT:IST-2015-323-v1-1</a>.
  ieee: K. Chatterjee, R. Ibsen-Jensen, and M. Nowak, <i>The complexity of evolutionary
    games on graphs</i>. IST Austria, 2015.
  ista: Chatterjee K, Ibsen-Jensen R, Nowak M. 2015. The complexity of evolutionary
    games on graphs, IST Austria, 29p.
  mla: Chatterjee, Krishnendu, et al. <i>The Complexity of Evolutionary Games on Graphs</i>.
    IST Austria, 2015, doi:<a href="https://doi.org/10.15479/AT:IST-2015-323-v1-1">10.15479/AT:IST-2015-323-v1-1</a>.
  short: K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary
    Games on Graphs, IST Austria, 2015.
date_created: 2018-12-12T11:39:18Z
date_published: 2015-02-19T00:00:00Z
date_updated: 2023-02-23T12:26:33Z
day: '19'
ddc:
- '005'
- '576'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2015-323-v1-1
file:
- access_level: open_access
  checksum: 546c1b291d545e7b24aaaf4199dac671
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:57Z
  date_updated: 2020-07-14T12:46:53Z
  file_id: '5519'
  file_name: IST-2015-323-v1+1_main.pdf
  file_size: 576347
  relation: main_file
file_date_updated: 2020-07-14T12:46:53Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '29'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '323'
related_material:
  record:
  - id: '5421'
    relation: earlier_version
    status: public
  - id: '5440'
    relation: later_version
    status: public
status: public
title: The complexity of evolutionary games on graphs
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5434'
abstract:
- lang: eng
  text: DEC-POMDPs extend POMDPs to a multi-agent setting, where several agents operate
    in an uncertain environment independently to achieve a joint objective. DEC-POMDPs
    have been studied with finite-horizon and infinite-horizon discounted-sum objectives,
    and there exist solvers both for exact and approximate solutions. In this work
    we consider Goal-DEC-POMDPs, where given a set of target states, the objective
    is to ensure that the target set is reached with minimal cost. We consider the
    indefinite-horizon (infinite-horizon with either discounted-sum, or undiscounted-sum,
    where absorbing goal states have zero-cost) problem. We present a new method to
    solve the problem that extends methods for finite-horizon DEC- POMDPs and the
    RTDP-Bel approach for POMDPs. We present experimental results on several examples,
    and show our approach presents promising results.
alternative_title:
- IST Austria Technical Report
author:
- first_name: '1'
  full_name: Anonymous, 1
  last_name: Anonymous
- first_name: '2'
  full_name: Anonymous, 2
  last_name: Anonymous
citation:
  ama: Anonymous 1, Anonymous 2. <i>Optimal Cost Indefinite-Horizon Reachability in
    Goal DEC-POMDPs</i>. IST Austria; 2015.
  apa: Anonymous, 1, &#38; Anonymous, 2. (2015). <i>Optimal cost indefinite-horizon
    reachability in goal DEC-POMDPs</i>. IST Austria.
  chicago: Anonymous, 1, and 2 Anonymous. <i>Optimal Cost Indefinite-Horizon Reachability
    in Goal DEC-POMDPs</i>. IST Austria, 2015.
  ieee: 1 Anonymous and 2 Anonymous, <i>Optimal cost indefinite-horizon reachability
    in goal DEC-POMDPs</i>. IST Austria, 2015.
  ista: Anonymous 1, Anonymous 2. 2015. Optimal cost indefinite-horizon reachability
    in goal DEC-POMDPs, IST Austria, 16p.
  mla: Anonymous, 1, and 2 Anonymous. <i>Optimal Cost Indefinite-Horizon Reachability
    in Goal DEC-POMDPs</i>. IST Austria, 2015.
  short: 1 Anonymous, 2 Anonymous, Optimal Cost Indefinite-Horizon Reachability in
    Goal DEC-POMDPs, IST Austria, 2015.
date_created: 2018-12-12T11:39:18Z
date_published: 2015-02-19T00:00:00Z
date_updated: 2020-07-14T23:04:59Z
day: '19'
ddc:
- '000'
file:
- access_level: open_access
  checksum: 8542fd0b10aed7811cd41077b8ccb632
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:14Z
  date_updated: 2020-07-14T12:46:53Z
  file_id: '5475'
  file_name: IST-2015-326-v1+1_main.pdf
  file_size: 378162
  relation: main_file
- access_level: closed
  checksum: 84c31c537bdaf7a91909f18d25d640ab
  content_type: text/plain
  creator: dernst
  date_created: 2019-04-16T13:00:33Z
  date_updated: 2020-07-14T12:46:53Z
  file_id: '6317'
  file_name: IST-2015-326-v1+2_authors.txt
  file_size: 64
  relation: main_file
file_date_updated: 2020-07-14T12:46:53Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '16'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '326'
status: public
title: Optimal cost indefinite-horizon reachability in goal DEC-POMDPs
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5435'
abstract:
- lang: eng
  text: "We consider Markov decision processes (MDPs) with multiple limit-average
    (or mean-payoff) objectives. \r\nThere have been two different views: (i) the
    expectation semantics, where the goal is to optimize the expected mean-payoff
    objective, and (ii) the satisfaction semantics, where the goal is to maximize
    the probability of runs such that the mean-payoff value stays above a given vector.
    \ \r\nWe consider the problem where the goal is to optimize the expectation under
    the constraint that the satisfaction semantics is ensured, and thus consider a
    generalization that unifies the existing semantics. Our problem captures the notion
    of optimization with respect to strategies that are risk-averse (i.e., ensures
    certain probabilistic guarantee).\r\nOur main results are algorithms for the decision
    problem which are always polynomial in the size of the MDP.\r\nWe also show that
    an approximation of the Pareto-curve can be computed in time polynomial in the
    size of the MDP, and the approximation factor, but exponential in the number of
    dimensions. Finally, we present a complete characterization of the strategy complexity
    (in terms of memory bounds and randomization) required to solve our problem."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Zuzana
  full_name: Komarkova, Zuzana
  last_name: Komarkova
- first_name: Jan
  full_name: Kretinsky, Jan
  id: 44CEF464-F248-11E8-B48F-1D18A9856A87
  last_name: Kretinsky
  orcid: 0000-0002-8122-2881
citation:
  ama: Chatterjee K, Komarkova Z, Kretinsky J. <i>Unifying Two Views on Multiple Mean-Payoff
    Objectives in Markov Decision Processes</i>. IST Austria; 2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-318-v2-1">10.15479/AT:IST-2015-318-v2-1</a>
  apa: Chatterjee, K., Komarkova, Z., &#38; Kretinsky, J. (2015). <i>Unifying two
    views on multiple mean-payoff objectives in Markov decision processes</i>. IST
    Austria. <a href="https://doi.org/10.15479/AT:IST-2015-318-v2-1">https://doi.org/10.15479/AT:IST-2015-318-v2-1</a>
  chicago: Chatterjee, Krishnendu, Zuzana Komarkova, and Jan Kretinsky. <i>Unifying
    Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes</i>.
    IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-318-v2-1">https://doi.org/10.15479/AT:IST-2015-318-v2-1</a>.
  ieee: K. Chatterjee, Z. Komarkova, and J. Kretinsky, <i>Unifying two views on multiple
    mean-payoff objectives in Markov decision processes</i>. IST Austria, 2015.
  ista: Chatterjee K, Komarkova Z, Kretinsky J. 2015. Unifying two views on multiple
    mean-payoff objectives in Markov decision processes, IST Austria, 51p.
  mla: Chatterjee, Krishnendu, et al. <i>Unifying Two Views on Multiple Mean-Payoff
    Objectives in Markov Decision Processes</i>. IST Austria, 2015, doi:<a href="https://doi.org/10.15479/AT:IST-2015-318-v2-1">10.15479/AT:IST-2015-318-v2-1</a>.
  short: K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple
    Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
date_created: 2018-12-12T11:39:19Z
date_published: 2015-02-23T00:00:00Z
date_updated: 2023-02-23T12:26:00Z
day: '23'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2015-318-v2-1
file:
- access_level: open_access
  checksum: 75284adec80baabdfe71ff9ebbc27445
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:03Z
  date_updated: 2020-07-14T12:46:53Z
  file_id: '5525'
  file_name: IST-2015-318-v2+1_main.pdf
  file_size: 717630
  relation: main_file
file_date_updated: 2020-07-14T12:46:53Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '51'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '327'
related_material:
  record:
  - id: '1657'
    relation: later_version
    status: public
  - id: '466'
    relation: later_version
    status: public
  - id: '5429'
    relation: earlier_version
    status: public
status: public
title: Unifying two views on multiple mean-payoff objectives in Markov decision processes
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '5436'
abstract:
- lang: eng
  text: "Recently there has been a significant effort to handle quantitative properties
    in formal verification and synthesis. While weighted automata over finite and
    infinite words provide a natural and flexible framework to express quantitative
    properties, perhaps surprisingly, some basic system properties such as average
    response time cannot be expressed using weighted automata, nor in any other know
    decidable formalism. In this work, we introduce nested weighted automata as a
    natural extension of weighted automata which makes it possible to express important
    quantitative properties such as average response time.\r\nIn nested weighted automata,
    a master automaton spins off and collects results from weighted slave automata,
    each of which computes a quantity along a finite portion of an infinite word.
    Nested weighted automata can be viewed as the quantitative analogue of monitor
    automata, which are used in run-time verification. We establish an almost complete
    decidability picture for the basic decision problems about nested weighted automata,
    and illustrate their applicability in several domains. In particular, nested weighted
    automata can be used to decide average response time properties."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Jan
  full_name: Otop, Jan
  id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
  last_name: Otop
citation:
  ama: Chatterjee K, Henzinger TA, Otop J. <i>Nested Weighted Automata</i>. IST Austria;
    2015. doi:<a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">10.15479/AT:IST-2015-170-v2-2</a>
  apa: Chatterjee, K., Henzinger, T. A., &#38; Otop, J. (2015). <i>Nested weighted
    automata</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">https://doi.org/10.15479/AT:IST-2015-170-v2-2</a>
  chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. <i>Nested Weighted
    Automata</i>. IST Austria, 2015. <a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">https://doi.org/10.15479/AT:IST-2015-170-v2-2</a>.
  ieee: K. Chatterjee, T. A. Henzinger, and J. Otop, <i>Nested weighted automata</i>.
    IST Austria, 2015.
  ista: Chatterjee K, Henzinger TA, Otop J. 2015. Nested weighted automata, IST Austria,
    29p.
  mla: Chatterjee, Krishnendu, et al. <i>Nested Weighted Automata</i>. IST Austria,
    2015, doi:<a href="https://doi.org/10.15479/AT:IST-2015-170-v2-2">10.15479/AT:IST-2015-170-v2-2</a>.
  short: K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria,
    2015.
date_created: 2018-12-12T11:39:19Z
date_published: 2015-04-24T00:00:00Z
date_updated: 2023-02-23T12:25:21Z
day: '24'
ddc:
- '000'
department:
- _id: KrCh
- _id: ToHe
doi: 10.15479/AT:IST-2015-170-v2-2
file:
- access_level: open_access
  checksum: 3c402f47d3669c28d04d1af405a08e3f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:19Z
  date_updated: 2020-07-14T12:46:54Z
  file_id: '5541'
  file_name: IST-2015-170-v2+2_report.pdf
  file_size: 569991
  relation: main_file
file_date_updated: 2020-07-14T12:46:54Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '29'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '331'
related_material:
  record:
  - id: '1656'
    relation: later_version
    status: public
  - id: '467'
    relation: later_version
    status: public
  - id: '5415'
    relation: earlier_version
    status: public
status: public
title: Nested weighted automata
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
