---
_id: '1729'
abstract:
- lang: eng
text: We present a computer-aided programming approach to concurrency. The approach
allows programmers to program assuming a friendly, non-preemptive scheduler, and
our synthesis procedure inserts synchronization to ensure that the final program
works even with a preemptive scheduler. The correctness specification is implicit,
inferred from the non-preemptive behavior. Let us consider sequences of calls
that the program makes to an external interface. The specification requires that
any such sequence produced under a preemptive scheduler should be included in
the set of such sequences produced under a non-preemptive scheduler. The solution
is based on a finitary abstraction, an algorithm for bounded language inclusion
modulo an independence relation, and rules for inserting synchronization. We apply
the approach to device-driver programming, where the driver threads call the software
interface of the device and the API provided by the operating system. Our experiments
demonstrate that our synthesis method is precise and efficient, and, since it
does not require explicit specifications, is more practical than the conventional
approach based on user-provided assertions.
alternative_title:
- LNCS
author:
- first_name: Pavol
full_name: Cerny, Pavol
id: 4DCBEFFE-F248-11E8-B48F-1D18A9856A87
last_name: Cerny
- first_name: Edmund
full_name: Clarke, Edmund
last_name: Clarke
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Arjun
full_name: Radhakrishna, Arjun
id: 3B51CAC4-F248-11E8-B48F-1D18A9856A87
last_name: Radhakrishna
- first_name: Leonid
full_name: Ryzhyk, Leonid
last_name: Ryzhyk
- first_name: Roopsha
full_name: Samanta, Roopsha
id: 3D2AAC08-F248-11E8-B48F-1D18A9856A87
last_name: Samanta
- first_name: Thorsten
full_name: Tarrach, Thorsten
id: 3D6E8F2C-F248-11E8-B48F-1D18A9856A87
last_name: Tarrach
orcid: 0000-0003-4409-8487
citation:
ama: Cerny P, Clarke E, Henzinger TA, et al. From non-preemptive to preemptive scheduling
using synchronization synthesis. 2015;9207:180-197. doi:10.1007/978-3-319-21668-3_11
apa: 'Cerny, P., Clarke, E., Henzinger, T. A., Radhakrishna, A., Ryzhyk, L., Samanta,
R., & Tarrach, T. (2015). From non-preemptive to preemptive scheduling using
synchronization synthesis. Presented at the CAV: Computer Aided Verification,
San Francisco, CA, United States: Springer. https://doi.org/10.1007/978-3-319-21668-3_11'
chicago: Cerny, Pavol, Edmund Clarke, Thomas A Henzinger, Arjun Radhakrishna, Leonid
Ryzhyk, Roopsha Samanta, and Thorsten Tarrach. “From Non-Preemptive to Preemptive
Scheduling Using Synchronization Synthesis.” Lecture Notes in Computer Science.
Springer, 2015. https://doi.org/10.1007/978-3-319-21668-3_11.
ieee: P. Cerny et al., “From non-preemptive to preemptive scheduling using
synchronization synthesis,” vol. 9207. Springer, pp. 180–197, 2015.
ista: Cerny P, Clarke E, Henzinger TA, Radhakrishna A, Ryzhyk L, Samanta R, Tarrach
T. 2015. From non-preemptive to preemptive scheduling using synchronization synthesis.
9207, 180–197.
mla: Cerny, Pavol, et al. From Non-Preemptive to Preemptive Scheduling Using
Synchronization Synthesis. Vol. 9207, Springer, 2015, pp. 180–97, doi:10.1007/978-3-319-21668-3_11.
short: P. Cerny, E. Clarke, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, R. Samanta,
T. Tarrach, 9207 (2015) 180–197.
conference:
end_date: 2015-07-24
location: San Francisco, CA, United States
name: 'CAV: Computer Aided Verification'
start_date: 2015-07-18
date_created: 2018-12-11T11:53:42Z
date_published: 2015-07-01T00:00:00Z
date_updated: 2023-09-20T11:13:50Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-319-21668-3_11
ec_funded: 1
file:
- access_level: local
checksum: 6ff58ac220e2f20cb001ba35d4924495
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:53Z
date_updated: 2020-07-14T12:45:13Z
file_id: '4715'
file_name: IST-2015-336-v1+1_long_version.pdf
file_size: 481922
relation: main_file
file_date_updated: 2020-07-14T12:45:13Z
has_accepted_license: '1'
intvolume: ' 9207'
language:
- iso: eng
month: '07'
oa_version: Submitted Version
page: 180 - 197
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication_status: published
publisher: Springer
publist_id: '5398'
pubrep_id: '336'
quality_controlled: '1'
related_material:
record:
- id: '1130'
relation: dissertation_contains
status: public
- id: '1338'
relation: later_version
status: public
scopus_import: 1
series_title: Lecture Notes in Computer Science
status: public
title: From non-preemptive to preemptive scheduling using synchronization synthesis
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9207
year: '2015'
...
---
_id: '1730'
abstract:
- lang: eng
text: How much cutting is needed to simplify the topology of a surface? We provide
bounds for several instances of this question, for the minimum length of topologically
non-trivial closed curves, pants decompositions, and cut graphs with a given combinatorial
map in triangulated combinatorial surfaces (or their dual cross-metric counterpart).
Our work builds upon Riemannian systolic inequalities, which bound the minimum
length of non-trivial closed curves in terms of the genus and the area of the
surface. We first describe a systematic way to translate Riemannian systolic inequalities
to a discrete setting, and vice-versa. This implies a conjecture by Przytycka
and Przytycki (Graph structure theory. Contemporary Mathematics, vol. 147, 1993),
a number of new systolic inequalities in the discrete setting, and the fact that
a theorem of Hutchinson on the edge-width of triangulated surfaces and Gromov’s
systolic inequality for surfaces are essentially equivalent. We also discuss how
these proofs generalize to higher dimensions. Then we focus on topological decompositions
of surfaces. Relying on ideas of Buser, we prove the existence of pants decompositions
of length O(g^(3/2)n^(1/2)) for any triangulated combinatorial surface of genus
g with n triangles, and describe an O(gn)-time algorithm to compute such a decomposition.
Finally, we consider the problem of embedding a cut graph (or more generally a
cellular graph) with a given combinatorial map on a given surface. Using random
triangulations, we prove (essentially) that, for any choice of a combinatorial
map, there are some surfaces on which any cellular embedding with that combinatorial
map has length superlinear in the number of triangles of the triangulated combinatorial
surface. There is also a similar result for graphs embedded on polyhedral triangulations.
author:
- first_name: Éric
full_name: Colin De Verdière, Éric
last_name: Colin De Verdière
- first_name: Alfredo
full_name: Hubard, Alfredo
last_name: Hubard
- first_name: Arnaud N
full_name: De Mesmay, Arnaud N
id: 3DB2F25C-F248-11E8-B48F-1D18A9856A87
last_name: De Mesmay
citation:
ama: Colin De Verdière É, Hubard A, de Mesmay AN. Discrete systolic inequalities
and decompositions of triangulated surfaces. Discrete & Computational Geometry.
2015;53(3):587-620. doi:10.1007/s00454-015-9679-9
apa: Colin De Verdière, É., Hubard, A., & de Mesmay, A. N. (2015). Discrete
systolic inequalities and decompositions of triangulated surfaces. Discrete
& Computational Geometry. Springer. https://doi.org/10.1007/s00454-015-9679-9
chicago: Colin De Verdière, Éric, Alfredo Hubard, and Arnaud N de Mesmay. “Discrete
Systolic Inequalities and Decompositions of Triangulated Surfaces.” Discrete
& Computational Geometry. Springer, 2015. https://doi.org/10.1007/s00454-015-9679-9.
ieee: É. Colin De Verdière, A. Hubard, and A. N. de Mesmay, “Discrete systolic inequalities
and decompositions of triangulated surfaces,” Discrete & Computational
Geometry, vol. 53, no. 3. Springer, pp. 587–620, 2015.
ista: Colin De Verdière É, Hubard A, de Mesmay AN. 2015. Discrete systolic inequalities
and decompositions of triangulated surfaces. Discrete & Computational Geometry.
53(3), 587–620.
mla: Colin De Verdière, Éric, et al. “Discrete Systolic Inequalities and Decompositions
of Triangulated Surfaces.” Discrete & Computational Geometry, vol.
53, no. 3, Springer, 2015, pp. 587–620, doi:10.1007/s00454-015-9679-9.
short: É. Colin De Verdière, A. Hubard, A.N. de Mesmay, Discrete & Computational
Geometry 53 (2015) 587–620.
date_created: 2018-12-11T11:53:42Z
date_published: 2015-04-02T00:00:00Z
date_updated: 2021-01-12T06:52:49Z
day: '02'
department:
- _id: UlWa
doi: 10.1007/s00454-015-9679-9
intvolume: ' 53'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1408.4036
month: '04'
oa: 1
oa_version: Preprint
page: 587 - 620
publication: Discrete & Computational Geometry
publication_status: published
publisher: Springer
publist_id: '5397'
quality_controlled: '1'
scopus_import: 1
status: public
title: Discrete systolic inequalities and decompositions of triangulated surfaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 53
year: '2015'
...
---
_id: '1731'
abstract:
- lang: eng
text: 'We consider two-player zero-sum games on graphs. These games can be classified
on the basis of the information of the players and on the mode of interaction
between them. On the basis of information the classification is as follows: (a)
partial-observation (both players have partial view of the game); (b) one-sided
complete-observation (one player has complete observation); and (c) complete-observation
(both players have complete view of the game). On the basis of mode of interaction
we have the following classification: (a) concurrent (both players interact simultaneously);
and (b) turn-based (both players interact in turn). The two sources of randomness
in these games are randomness in transition function and randomness in strategies.
In general, randomized strategies are more powerful than deterministic strategies,
and randomness in transitions gives more general classes of games. In this work
we present a complete characterization for the classes of games where randomness
is not helpful in: (a) the transition function probabilistic transition can be
simulated by deterministic transition); and (b) strategies (pure strategies are
as powerful as randomized strategies). As consequence of our characterization
we obtain new undecidability results for these games. '
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Laurent
full_name: Doyen, Laurent
last_name: Doyen
- first_name: Hugo
full_name: Gimbert, Hugo
last_name: Gimbert
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: Chatterjee K, Doyen L, Gimbert H, Henzinger TA. Randomness for free. Information
and Computation. 2015;245(12):3-16. doi:10.1016/j.ic.2015.06.003
apa: Chatterjee, K., Doyen, L., Gimbert, H., & Henzinger, T. A. (2015). Randomness
for free. Information and Computation. Elsevier. https://doi.org/10.1016/j.ic.2015.06.003
chicago: Chatterjee, Krishnendu, Laurent Doyen, Hugo Gimbert, and Thomas A Henzinger.
“Randomness for Free.” Information and Computation. Elsevier, 2015. https://doi.org/10.1016/j.ic.2015.06.003.
ieee: K. Chatterjee, L. Doyen, H. Gimbert, and T. A. Henzinger, “Randomness for
free,” Information and Computation, vol. 245, no. 12. Elsevier, pp. 3–16,
2015.
ista: Chatterjee K, Doyen L, Gimbert H, Henzinger TA. 2015. Randomness for free.
Information and Computation. 245(12), 3–16.
mla: Chatterjee, Krishnendu, et al. “Randomness for Free.” Information and Computation,
vol. 245, no. 12, Elsevier, 2015, pp. 3–16, doi:10.1016/j.ic.2015.06.003.
short: K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, Information and Computation
245 (2015) 3–16.
date_created: 2018-12-11T11:53:42Z
date_published: 2015-12-01T00:00:00Z
date_updated: 2023-02-23T11:45:42Z
day: '01'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1016/j.ic.2015.06.003
ec_funded: 1
intvolume: ' 245'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1006.0673
month: '12'
oa: 1
oa_version: Preprint
page: 3 - 16
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '267989'
name: Quantitative Reactive Modeling
- _id: 25EFB36C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '215543'
name: COMponent-Based Embedded Systems design Techniques
- _id: 25F1337C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '214373'
name: Design for Embedded Systems
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication: Information and Computation
publication_status: published
publisher: Elsevier
publist_id: '5395'
quality_controlled: '1'
related_material:
record:
- id: '3856'
relation: earlier_version
status: public
scopus_import: 1
status: public
title: Randomness for free
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 245
year: '2015'
...
---
_id: '1732'
abstract:
- lang: eng
text: We consider partially observable Markov decision processes (POMDPs), that
are a standard framework for robotics applications to model uncertainties present
in the real world, with temporal logic specifications. All temporal logic specifications
in linear-time temporal logic (LTL) can be expressed as parity objectives. We
study the qualitative analysis problem for POMDPs with parity objectives that
asks whether there is a controller (policy) to ensure that the objective holds
with probability 1 (almost-surely). While the qualitative analysis of POMDPs with
parity objectives is undecidable, recent results show that when restricted to
finite-memory policies the problem is EXPTIME-complete. While the problem is intractable
in theory, we present a practical approach to solve the qualitative analysis problem.
We designed several heuristics to deal with the exponential complexity, and have
used our implementation on a number of well-known POMDP examples for robotics
applications. Our results provide the first practical approach to solve the qualitative
analysis of robot motion planning with LTL properties in the presence of uncertainty.
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Chmelik, Martin
id: 3624234E-F248-11E8-B48F-1D18A9856A87
last_name: Chmelik
- first_name: Raghav
full_name: Gupta, Raghav
last_name: Gupta
- first_name: Ayush
full_name: Kanodia, Ayush
last_name: Kanodia
citation:
ama: 'Chatterjee K, Chmelik M, Gupta R, Kanodia A. Qualitative analysis of POMDPs
with temporal logic specifications for robotics applications. In: IEEE; 2015:325-330.
doi:10.1109/ICRA.2015.7139019'
apa: 'Chatterjee, K., Chmelik, M., Gupta, R., & Kanodia, A. (2015). Qualitative
analysis of POMDPs with temporal logic specifications for robotics applications
(pp. 325–330). Presented at the ICRA: International Conference on Robotics and
Automation, Seattle, WA, United States: IEEE. https://doi.org/10.1109/ICRA.2015.7139019'
chicago: Chatterjee, Krishnendu, Martin Chmelik, Raghav Gupta, and Ayush Kanodia.
“Qualitative Analysis of POMDPs with Temporal Logic Specifications for Robotics
Applications,” 325–30. IEEE, 2015. https://doi.org/10.1109/ICRA.2015.7139019.
ieee: 'K. Chatterjee, M. Chmelik, R. Gupta, and A. Kanodia, “Qualitative analysis
of POMDPs with temporal logic specifications for robotics applications,” presented
at the ICRA: International Conference on Robotics and Automation, Seattle, WA,
United States, 2015, pp. 325–330.'
ista: 'Chatterjee K, Chmelik M, Gupta R, Kanodia A. 2015. Qualitative analysis of
POMDPs with temporal logic specifications for robotics applications. ICRA: International
Conference on Robotics and Automation, 325–330.'
mla: Chatterjee, Krishnendu, et al. Qualitative Analysis of POMDPs with Temporal
Logic Specifications for Robotics Applications. IEEE, 2015, pp. 325–30, doi:10.1109/ICRA.2015.7139019.
short: K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, IEEE, 2015, pp. 325–330.
conference:
end_date: 2015-05-30
location: Seattle, WA, United States
name: 'ICRA: International Conference on Robotics and Automation'
start_date: 2015-05-26
date_created: 2018-12-11T11:53:43Z
date_published: 2015-01-01T00:00:00Z
date_updated: 2023-02-23T12:25:52Z
day: '01'
department:
- _id: KrCh
doi: 10.1109/ICRA.2015.7139019
ec_funded: 1
external_id:
arxiv:
- '1409.3360'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1409.3360
month: '01'
oa: 1
oa_version: Preprint
page: 325 - 330
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
publication_status: published
publisher: IEEE
publist_id: '5394'
quality_controlled: '1'
related_material:
record:
- id: '5424'
relation: earlier_version
status: public
- id: '5426'
relation: earlier_version
status: public
scopus_import: 1
status: public
title: Qualitative analysis of POMDPs with temporal logic specifications for robotics
applications
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '1734'
abstract:
- lang: eng
text: Facial appearance capture is now firmly established within academic research
and used extensively across various application domains, perhaps most prominently
in the entertainment industry through the design of virtual characters in video
games and films. While significant progress has occurred over the last two decades,
no single survey currently exists that discusses the similarities, differences,
and practical considerations of the available appearance capture techniques as
applied to human faces. A central difficulty of facial appearance capture is the
way light interacts with skin-which has a complex multi-layered structure-and
the interactions that occur below the skin surface can, by definition, only be
observed indirectly. In this report, we distinguish between two broad strategies
for dealing with this complexity. "Image-based methods" try to exhaustively
capture the exact face appearance under different lighting and viewing conditions,
and then render the face through weighted image combinations. "Parametric
methods" instead fit the captured reflectance data to some parametric appearance
model used during rendering, allowing for a more lightweight and flexible representation
but at the cost of potentially increased rendering complexity or inexact reproduction.
The goal of this report is to provide an overview that can guide practitioners
and researchers in assessing the tradeoffs between current approaches and identifying
directions for future advances in facial appearance capture.
author:
- first_name: Oliver
full_name: Klehm, Oliver
last_name: Klehm
- first_name: Fabrice
full_name: Rousselle, Fabrice
last_name: Rousselle
- first_name: Marios
full_name: Papas, Marios
last_name: Papas
- first_name: Derek
full_name: Bradley, Derek
last_name: Bradley
- first_name: Christophe
full_name: Hery, Christophe
last_name: Hery
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
- first_name: Wojciech
full_name: Jarosz, Wojciech
last_name: Jarosz
- first_name: Thabo
full_name: Beeler, Thabo
last_name: Beeler
citation:
ama: Klehm O, Rousselle F, Papas M, et al. Recent advances in facial appearance
capture. Computer Graphics Forum. 2015;34(2):709-733. doi:10.1111/cgf.12594
apa: Klehm, O., Rousselle, F., Papas, M., Bradley, D., Hery, C., Bickel, B., … Beeler,
T. (2015). Recent advances in facial appearance capture. Computer Graphics
Forum. Wiley-Blackwell. https://doi.org/10.1111/cgf.12594
chicago: Klehm, Oliver, Fabrice Rousselle, Marios Papas, Derek Bradley, Christophe
Hery, Bernd Bickel, Wojciech Jarosz, and Thabo Beeler. “Recent Advances in Facial
Appearance Capture.” Computer Graphics Forum. Wiley-Blackwell, 2015. https://doi.org/10.1111/cgf.12594.
ieee: O. Klehm et al., “Recent advances in facial appearance capture,” Computer
Graphics Forum, vol. 34, no. 2. Wiley-Blackwell, pp. 709–733, 2015.
ista: Klehm O, Rousselle F, Papas M, Bradley D, Hery C, Bickel B, Jarosz W, Beeler
T. 2015. Recent advances in facial appearance capture. Computer Graphics Forum.
34(2), 709–733.
mla: Klehm, Oliver, et al. “Recent Advances in Facial Appearance Capture.” Computer
Graphics Forum, vol. 34, no. 2, Wiley-Blackwell, 2015, pp. 709–33, doi:10.1111/cgf.12594.
short: O. Klehm, F. Rousselle, M. Papas, D. Bradley, C. Hery, B. Bickel, W. Jarosz,
T. Beeler, Computer Graphics Forum 34 (2015) 709–733.
date_created: 2018-12-11T11:53:43Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2021-01-12T06:52:52Z
day: '01'
department:
- _id: BeBi
doi: 10.1111/cgf.12594
intvolume: ' 34'
issue: '2'
language:
- iso: eng
main_file_link:
- url: https://graphics.ethz.ch/~mpapas/publications/fac_star.pdf
month: '05'
oa_version: None
page: 709 - 733
publication: Computer Graphics Forum
publication_status: published
publisher: Wiley-Blackwell
publist_id: '5391'
quality_controlled: '1'
scopus_import: 1
status: public
title: Recent advances in facial appearance capture
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2015'
...
---
_id: '1735'
abstract:
- lang: eng
text: This work presents a method for efficiently simplifying the pressure projection
step in a liquid simulation. We first devise a straightforward dimension reduction
technique that dramatically reduces the cost of solving the pressure projection.
Next, we introduce a novel change of basis that satisfies free-surface boundary
conditions exactly, regardless of the accuracy of the pressure solve. When combined,
these ideas greatly reduce the computational complexity of the pressure solve
without compromising free surface boundary conditions at the highest level of
detail. Our techniques are easy to parallelize, and they effectively eliminate
the computational bottleneck for large liquid simulations.
acknowledgement: The first author was supported by a JSPS Postdoctoral Fellowship
for Research Abroad
author:
- first_name: Ryoichi
full_name: Ando, Ryoichi
last_name: Ando
- first_name: Nils
full_name: Thürey, Nils
last_name: Thürey
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Ando R, Thürey N, Wojtan C. A dimension-reduced pressure solver for liquid
simulations. Computer Graphics Forum. 2015;34(2):473-480. doi:10.1111/cgf.12576
apa: Ando, R., Thürey, N., & Wojtan, C. (2015). A dimension-reduced pressure
solver for liquid simulations. Computer Graphics Forum. Wiley. https://doi.org/10.1111/cgf.12576
chicago: Ando, Ryoichi, Nils Thürey, and Chris Wojtan. “A Dimension-Reduced Pressure
Solver for Liquid Simulations.” Computer Graphics Forum. Wiley, 2015. https://doi.org/10.1111/cgf.12576.
ieee: R. Ando, N. Thürey, and C. Wojtan, “A dimension-reduced pressure solver for
liquid simulations,” Computer Graphics Forum, vol. 34, no. 2. Wiley, pp.
473–480, 2015.
ista: Ando R, Thürey N, Wojtan C. 2015. A dimension-reduced pressure solver for
liquid simulations. Computer Graphics Forum. 34(2), 473–480.
mla: Ando, Ryoichi, et al. “A Dimension-Reduced Pressure Solver for Liquid Simulations.”
Computer Graphics Forum, vol. 34, no. 2, Wiley, 2015, pp. 473–80, doi:10.1111/cgf.12576.
short: R. Ando, N. Thürey, C. Wojtan, Computer Graphics Forum 34 (2015) 473–480.
date_created: 2018-12-11T11:53:44Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2023-02-23T10:12:11Z
day: '01'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1111/cgf.12576
file:
- access_level: open_access
checksum: 590752bf977855b337a80f78a9bc2404
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:30Z
date_updated: 2020-07-14T12:45:15Z
file_id: '5218'
file_name: IST-2016-607-v1+1_coarsegrid.pdf
file_size: 6312352
relation: main_file
file_date_updated: 2020-07-14T12:45:15Z
has_accepted_license: '1'
intvolume: ' 34'
issue: '2'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
page: 473 - 480
publication: Computer Graphics Forum
publication_status: published
publisher: Wiley
publist_id: '5389'
pubrep_id: '607'
quality_controlled: '1'
scopus_import: 1
status: public
title: A dimension-reduced pressure solver for liquid simulations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2015'
...
---
_id: '1788'
abstract:
- lang: eng
text: We fabricate and characterize a microscale silicon opto-electromechanical
system whose mechanical motion is coupled capacitively to an electrical circuit
and optically via radiation pressure to a photonic crystal cavity. To achieve
large electromechanical interaction strength, we implement an inverse shadow mask
fabrication scheme which obtains capacitor gaps as small as 30 nm while maintaining
a silicon surface quality necessary for minimizing optical loss. Using the sensitive
optical read-out of the photonic crystal cavity, we characterize the linear and
nonlinear capacitive coupling to the fundamental ωm=2π = 63 MHz in-plane flexural
motion of the structure, showing that the large electromechanical coupling in
such devices may be suitable for realizing efficient microwave-to-optical signal
conversion.
acknowledgement: This work was supported by the DARPA MESO program, the AFOSR Hybrid
Nanophotonics MURI, the Institute for Quantum Information and Matter, an NSF Physics
Frontiers Center with support of the Gordon and Betty Moore Foundation, and the
Kavli Nanoscience Institute at Caltech. AP gratefully acknowledge funding from EU
through Marie Curie Actions, project NEMO (GA 298861). AT acknowledges partial financial
support from the ERC through the advanced grant SoulMan
author:
- first_name: Alessandro
full_name: Pitanti, Alessandro
last_name: Pitanti
- first_name: Johannes M
full_name: Johannes Fink
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
- first_name: Amir
full_name: Safavi-Naeini, Amir H
last_name: Safavi Naeini
- first_name: Jeff
full_name: Hill, Jeff T
last_name: Hill
- first_name: Chan
full_name: Lei, Chan U
last_name: Lei
- first_name: Alessandro
full_name: Tredicucci, Alessandro
last_name: Tredicucci
- first_name: Oskar
full_name: Painter, Oskar J
last_name: Painter
citation:
ama: Pitanti A, Fink JM, Safavi Naeini A, et al. Strong opto-electro-mechanical
coupling in a silicon photonic crystal cavity. Optics Express. 2015;23(3):3196-3208.
doi:10.1364/OE.23.003196
apa: Pitanti, A., Fink, J. M., Safavi Naeini, A., Hill, J., Lei, C., Tredicucci,
A., & Painter, O. (2015). Strong opto-electro-mechanical coupling in a silicon
photonic crystal cavity. Optics Express. Optical Society of America. https://doi.org/10.1364/OE.23.003196
chicago: Pitanti, Alessandro, Johannes M Fink, Amir Safavi Naeini, Jeff Hill, Chan
Lei, Alessandro Tredicucci, and Oskar Painter. “Strong Opto-Electro-Mechanical
Coupling in a Silicon Photonic Crystal Cavity.” Optics Express. Optical
Society of America, 2015. https://doi.org/10.1364/OE.23.003196.
ieee: A. Pitanti et al., “Strong opto-electro-mechanical coupling in a silicon
photonic crystal cavity,” Optics Express, vol. 23, no. 3. Optical Society
of America, pp. 3196–3208, 2015.
ista: Pitanti A, Fink JM, Safavi Naeini A, Hill J, Lei C, Tredicucci A, Painter
O. 2015. Strong opto-electro-mechanical coupling in a silicon photonic crystal
cavity. Optics Express. 23(3), 3196–3208.
mla: Pitanti, Alessandro, et al. “Strong Opto-Electro-Mechanical Coupling in a Silicon
Photonic Crystal Cavity.” Optics Express, vol. 23, no. 3, Optical Society
of America, 2015, pp. 3196–208, doi:10.1364/OE.23.003196.
short: A. Pitanti, J.M. Fink, A. Safavi Naeini, J. Hill, C. Lei, A. Tredicucci,
O. Painter, Optics Express 23 (2015) 3196–3208.
date_created: 2018-12-11T11:54:01Z
date_published: 2015-02-09T00:00:00Z
date_updated: 2021-01-12T06:53:12Z
day: '09'
doi: 10.1364/OE.23.003196
extern: 1
intvolume: ' 23'
issue: '3'
month: '02'
page: 3196 - 3208
publication: Optics Express
publication_status: published
publisher: Optical Society of America
publist_id: '5325'
quality_controlled: 0
status: public
title: Strong opto-electro-mechanical coupling in a silicon photonic crystal cavity
type: journal_article
volume: 23
year: '2015'
...
---
_id: '1789'
abstract:
- lang: eng
text: Intellectual disability (ID) has an estimated prevalence of 2-3%. Due to its
extreme heterogeneity, the genetic basis of ID remains elusive in many cases.
Recently, whole exome sequencing (WES) studies revealed that a large proportion
of sporadic cases are caused by de novo gene variants. To identify further genes
involved in ID, we performed WES in 250 patients with unexplained ID and their
unaffected parents and included exomes of 51 previously sequenced child-parents
trios in the analysis. Exome analysis revealed de novo intragenic variants in
SET domain-containing 5 (SETD5) in two patients. One patient carried a nonsense
variant, and the other an 81 bp deletion located across a splice-donor site. Chromosomal
microarray diagnostics further identified four de novo non-recurrent microdeletions
encompassing SETD5. CRISPR/Cas9 mutation modelling of the two intragenic variants
demonstrated nonsense-mediated decay of the resulting transcripts, pointing to
a loss-of-function (LoF) and haploinsufficiency as the common disease-causing
mechanism of intragenic SETD5 sequence variants and SETD5-containing microdeletions.
In silico domain prediction of SETD5, a predicted SET domain-containing histone
methyltransferase (HMT), substantiated the presence of a SET domain and identified
a novel putative PHD domain, strengthening a functional link to well-known histone-modifying
ID genes. All six patients presented with ID and certain facial dysmorphisms,
suggesting that SETD5 sequence variants contribute substantially to the microdeletion
3p25.3 phenotype. The present report of two SETD5 LoF variants in 301 patients
demonstrates a prevalence of 0.7% and thus SETD5 variants as a relatively frequent
cause of ID.
author:
- first_name: Alma
full_name: Kuechler, Alma
last_name: Kuechler
- first_name: Alexander
full_name: Zink, Alexander
last_name: Zink
- first_name: Thomas
full_name: Wieland, Thomas
last_name: Wieland
- first_name: Hermann
full_name: Lüdecke, Hermann
last_name: Lüdecke
- first_name: Kirsten
full_name: Cremer, Kirsten
last_name: Cremer
- first_name: Leonardo
full_name: Salviati, Leonardo
last_name: Salviati
- first_name: Pamela
full_name: Magini, Pamela
last_name: Magini
- first_name: Kimia
full_name: Najafi, Kimia
last_name: Najafi
- first_name: Christiane
full_name: Zweier, Christiane
last_name: Zweier
- first_name: Johanna
full_name: Czeschik, Johanna
last_name: Czeschik
- first_name: Stefan
full_name: Aretz, Stefan
last_name: Aretz
- first_name: Sabine
full_name: Endele, Sabine
last_name: Endele
- first_name: Federica
full_name: Tamburrino, Federica
last_name: Tamburrino
- first_name: Claudia
full_name: Pinato, Claudia
last_name: Pinato
- first_name: Maurizio
full_name: Clementi, Maurizio
last_name: Clementi
- first_name: Jasmin
full_name: Gundlach, Jasmin
last_name: Gundlach
- first_name: Carina
full_name: Maylahn, Carina
last_name: Maylahn
- first_name: Laura
full_name: Mazzanti, Laura
last_name: Mazzanti
- first_name: Eva
full_name: Wohlleber, Eva
last_name: Wohlleber
- first_name: Thomas
full_name: Schwarzmayr, Thomas
last_name: Schwarzmayr
- first_name: Roxana
full_name: Kariminejad, Roxana
last_name: Kariminejad
- first_name: Avner
full_name: Schlessinger, Avner
last_name: Schlessinger
- first_name: Dagmar
full_name: Wieczorek, Dagmar
last_name: Wieczorek
- first_name: Tim
full_name: Strom, Tim
last_name: Strom
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Hartmut
full_name: Engels, Hartmut
last_name: Engels
citation:
ama: Kuechler A, Zink A, Wieland T, et al. Loss-of-function variants of SETD5 cause
intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome.
European Journal of Human Genetics. 2015;23(6):753-760. doi:10.1038/ejhg.2014.165
apa: Kuechler, A., Zink, A., Wieland, T., Lüdecke, H., Cremer, K., Salviati, L.,
… Engels, H. (2015). Loss-of-function variants of SETD5 cause intellectual disability
and the core phenotype of microdeletion 3p25.3 syndrome. European Journal of
Human Genetics. Nature Publishing Group. https://doi.org/10.1038/ejhg.2014.165
chicago: Kuechler, Alma, Alexander Zink, Thomas Wieland, Hermann Lüdecke, Kirsten
Cremer, Leonardo Salviati, Pamela Magini, et al. “Loss-of-Function Variants of
SETD5 Cause Intellectual Disability and the Core Phenotype of Microdeletion 3p25.3
Syndrome.” European Journal of Human Genetics. Nature Publishing Group,
2015. https://doi.org/10.1038/ejhg.2014.165.
ieee: A. Kuechler et al., “Loss-of-function variants of SETD5 cause intellectual
disability and the core phenotype of microdeletion 3p25.3 syndrome,” European
Journal of Human Genetics, vol. 23, no. 6. Nature Publishing Group, pp. 753–760,
2015.
ista: Kuechler A, Zink A, Wieland T, Lüdecke H, Cremer K, Salviati L, Magini P,
Najafi K, Zweier C, Czeschik J, Aretz S, Endele S, Tamburrino F, Pinato C, Clementi
M, Gundlach J, Maylahn C, Mazzanti L, Wohlleber E, Schwarzmayr T, Kariminejad
R, Schlessinger A, Wieczorek D, Strom T, Novarino G, Engels H. 2015. Loss-of-function
variants of SETD5 cause intellectual disability and the core phenotype of microdeletion
3p25.3 syndrome. European Journal of Human Genetics. 23(6), 753–760.
mla: Kuechler, Alma, et al. “Loss-of-Function Variants of SETD5 Cause Intellectual
Disability and the Core Phenotype of Microdeletion 3p25.3 Syndrome.” European
Journal of Human Genetics, vol. 23, no. 6, Nature Publishing Group, 2015,
pp. 753–60, doi:10.1038/ejhg.2014.165.
short: A. Kuechler, A. Zink, T. Wieland, H. Lüdecke, K. Cremer, L. Salviati, P.
Magini, K. Najafi, C. Zweier, J. Czeschik, S. Aretz, S. Endele, F. Tamburrino,
C. Pinato, M. Clementi, J. Gundlach, C. Maylahn, L. Mazzanti, E. Wohlleber, T.
Schwarzmayr, R. Kariminejad, A. Schlessinger, D. Wieczorek, T. Strom, G. Novarino,
H. Engels, European Journal of Human Genetics 23 (2015) 753–760.
date_created: 2018-12-11T11:54:01Z
date_published: 2015-06-15T00:00:00Z
date_updated: 2021-01-12T06:53:12Z
day: '15'
department:
- _id: GaNo
doi: 10.1038/ejhg.2014.165
external_id:
pmid:
- '25138099'
intvolume: ' 23'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4795044/
month: '06'
oa: 1
oa_version: Submitted Version
page: 753 - 760
pmid: 1
publication: European Journal of Human Genetics
publication_status: published
publisher: Nature Publishing Group
publist_id: '5324'
quality_controlled: '1'
status: public
title: Loss-of-function variants of SETD5 cause intellectual disability and the core
phenotype of microdeletion 3p25.3 syndrome
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2015'
...
---
_id: '1792'
abstract:
- lang: eng
text: Motivated by recent ideas of Harman (Unif. Distrib. Theory, 2010) we develop
a new concept of variation of multivariate functions on a compact Hausdorff space
with respect to a collection D of subsets. We prove a general version of the Koksma-Hlawka
theorem that holds for this notion of variation and discrepancy with respect to
D. As special cases, we obtain Koksma-Hlawka inequalities for classical notions,
such as extreme or isotropic discrepancy. For extreme discrepancy, our result
coincides with the usual Koksma-Hlawka theorem. We show that the space of functions
of bounded D-variation contains important discontinuous functions and is closed
under natural algebraic operations. Finally, we illustrate the results on concrete
integration problems from integral geometry and stereology.
acknowledgement: F.P. is supported by the Graduate School of IST Austria, A.M.S is
supported by the Centre for Stochastic Geometry and Advanced Bioimaging funded by
a grant from the Villum Foundation.
author:
- first_name: Florian
full_name: Pausinger, Florian
id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
last_name: Pausinger
orcid: 0000-0002-8379-3768
- first_name: Anne
full_name: Svane, Anne
last_name: Svane
citation:
ama: Pausinger F, Svane A. A Koksma-Hlawka inequality for general discrepancy systems.
Journal of Complexity. 2015;31(6):773-797. doi:10.1016/j.jco.2015.06.002
apa: Pausinger, F., & Svane, A. (2015). A Koksma-Hlawka inequality for general
discrepancy systems. Journal of Complexity. Academic Press. https://doi.org/10.1016/j.jco.2015.06.002
chicago: Pausinger, Florian, and Anne Svane. “A Koksma-Hlawka Inequality for General
Discrepancy Systems.” Journal of Complexity. Academic Press, 2015. https://doi.org/10.1016/j.jco.2015.06.002.
ieee: F. Pausinger and A. Svane, “A Koksma-Hlawka inequality for general discrepancy
systems,” Journal of Complexity, vol. 31, no. 6. Academic Press, pp. 773–797,
2015.
ista: Pausinger F, Svane A. 2015. A Koksma-Hlawka inequality for general discrepancy
systems. Journal of Complexity. 31(6), 773–797.
mla: Pausinger, Florian, and Anne Svane. “A Koksma-Hlawka Inequality for General
Discrepancy Systems.” Journal of Complexity, vol. 31, no. 6, Academic Press,
2015, pp. 773–97, doi:10.1016/j.jco.2015.06.002.
short: F. Pausinger, A. Svane, Journal of Complexity 31 (2015) 773–797.
date_created: 2018-12-11T11:54:02Z
date_published: 2015-12-01T00:00:00Z
date_updated: 2023-09-07T11:41:25Z
day: '01'
department:
- _id: HeEd
doi: 10.1016/j.jco.2015.06.002
intvolume: ' 31'
issue: '6'
language:
- iso: eng
month: '12'
oa_version: None
page: 773 - 797
publication: Journal of Complexity
publication_status: published
publisher: Academic Press
publist_id: '5320'
quality_controlled: '1'
related_material:
record:
- id: '1399'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: A Koksma-Hlawka inequality for general discrepancy systems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2015'
...
---
_id: '1793'
abstract:
- lang: eng
text: We present a software platform for reconstructing and analyzing the growth
of a plant root system from a time-series of 3D voxelized shapes. It aligns the
shapes with each other, constructs a geometric graph representation together with
the function that records the time of growth, and organizes the branches into
a hierarchy that reflects the order of creation. The software includes the automatic
computation of structural and dynamic traits for each root in the system enabling
the quantification of growth on fine-scale. These are important advances in plant
phenotyping with applications to the study of genetic and environmental influences
on growth.
article_number: e0127657
author:
- first_name: Olga
full_name: Symonova, Olga
id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
last_name: Symonova
- first_name: Christopher
full_name: Topp, Christopher
last_name: Topp
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Symonova O, Topp C, Edelsbrunner H. DynamicRoots: A software platform for
the reconstruction and analysis of growing plant roots. PLoS One. 2015;10(6).
doi:10.1371/journal.pone.0127657'
apa: 'Symonova, O., Topp, C., & Edelsbrunner, H. (2015). DynamicRoots: A software
platform for the reconstruction and analysis of growing plant roots. PLoS One.
Public Library of Science. https://doi.org/10.1371/journal.pone.0127657'
chicago: 'Symonova, Olga, Christopher Topp, and Herbert Edelsbrunner. “DynamicRoots:
A Software Platform for the Reconstruction and Analysis of Growing Plant Roots.”
PLoS One. Public Library of Science, 2015. https://doi.org/10.1371/journal.pone.0127657.'
ieee: 'O. Symonova, C. Topp, and H. Edelsbrunner, “DynamicRoots: A software platform
for the reconstruction and analysis of growing plant roots,” PLoS One,
vol. 10, no. 6. Public Library of Science, 2015.'
ista: 'Symonova O, Topp C, Edelsbrunner H. 2015. DynamicRoots: A software platform
for the reconstruction and analysis of growing plant roots. PLoS One. 10(6), e0127657.'
mla: 'Symonova, Olga, et al. “DynamicRoots: A Software Platform for the Reconstruction
and Analysis of Growing Plant Roots.” PLoS One, vol. 10, no. 6, e0127657,
Public Library of Science, 2015, doi:10.1371/journal.pone.0127657.'
short: O. Symonova, C. Topp, H. Edelsbrunner, PLoS One 10 (2015).
date_created: 2018-12-11T11:54:02Z
date_published: 2015-06-01T00:00:00Z
date_updated: 2023-02-23T14:06:33Z
day: '01'
ddc:
- '000'
department:
- _id: MaJö
- _id: HeEd
doi: 10.1371/journal.pone.0127657
file:
- access_level: open_access
checksum: d20f26461ca575276ad3ed9ce4bfc787
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:30Z
date_updated: 2020-07-14T12:45:16Z
file_id: '5150'
file_name: IST-2016-454-v1+1_journal.pone.0127657.pdf
file_size: 1850825
relation: main_file
file_date_updated: 2020-07-14T12:45:16Z
has_accepted_license: '1'
intvolume: ' 10'
issue: '6'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '06'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '5318'
pubrep_id: '454'
quality_controlled: '1'
related_material:
record:
- id: '9737'
relation: research_data
status: public
scopus_import: 1
status: public
title: 'DynamicRoots: A software platform for the reconstruction and analysis of growing
plant roots'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2015'
...
---
_id: '1802'
abstract:
- lang: eng
text: Noncoding variants in the human MIR137 gene locus increase schizophrenia risk
with genome-wide significance. However, the functional consequence of these risk
alleles is unknown. Here we examined induced human neurons harboring the minor
alleles of four disease-associated single nucleotide polymorphisms in MIR137.
We observed increased MIR137 levels compared to those in major allele–carrying
cells. microRNA-137 gain of function caused downregulation of the presynaptic
target genes complexin-1 (Cplx1), Nsf and synaptotagmin-1 (Syt1), leading to impaired
vesicle release. In vivo, miR-137 gain of function resulted in changes in synaptic
vesicle pool distribution, impaired induction of mossy fiber long-term potentiation
and deficits in hippocampus-dependent learning and memory. By sequestering endogenous
miR-137, we were able to ameliorate the synaptic phenotypes. Moreover, reinstatement
of Syt1 expression partially restored synaptic plasticity, demonstrating the importance
of Syt1 as a miR-137 target. Our data provide new insight into the mechanism by
which miR-137 dysregulation can impair synaptic plasticity in the hippocampus.
acknowledgement: S.S. was supported by a Human Frontier Science Program (HFSP) long-term
postdoctoral fellowship and a Swiss National Science Foundation fellowship for prospective
researchers. E.J.K. was supported by a Simons Foundation Postdoctoral Fellowship.
A.R. was supported by a NARSAD Young Investigator Award. This work was supported
by a Seed Grant from the Simons Center for the Social Brain and US National Institutes
of Health grant RO1 MH 091115 to L.-H.T.
author:
- first_name: Sandra
full_name: Sandra Siegert
id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
last_name: Siegert
orcid: 0000-0001-8635-0877
- first_name: Jinsoo
full_name: Seo, Jinsoo
last_name: Seo
- first_name: Ester
full_name: Kwon, Ester J
last_name: Kwon
- first_name: Andrii
full_name: Rudenko, Andrii
last_name: Rudenko
- first_name: Sukhee
full_name: Cho, Sukhee
last_name: Cho
- first_name: Wenyuan
full_name: Wang, Wenyuan
last_name: Wang
- first_name: Zachary
full_name: Flood, Zachary C
last_name: Flood
- first_name: Anthony
full_name: Martorell, Anthony J
last_name: Martorell
- first_name: Maria
full_name: Ericsson, Maria
last_name: Ericsson
- first_name: Alison
full_name: Mungenast, Alison E
last_name: Mungenast
- first_name: Lihuei
full_name: Tsai, Lihuei
last_name: Tsai
citation:
ama: Siegert S, Seo J, Kwon E, et al. The schizophrenia risk gene product miR-137
alters presynaptic plasticity. Nature Neuroscience. 2015;18:1008-1016.
doi:10.1038/nn.4023
apa: Siegert, S., Seo, J., Kwon, E., Rudenko, A., Cho, S., Wang, W., … Tsai, L.
(2015). The schizophrenia risk gene product miR-137 alters presynaptic plasticity.
Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.4023
chicago: Siegert, Sandra, Jinsoo Seo, Ester Kwon, Andrii Rudenko, Sukhee Cho, Wenyuan
Wang, Zachary Flood, et al. “The Schizophrenia Risk Gene Product MiR-137 Alters
Presynaptic Plasticity.” Nature Neuroscience. Nature Publishing Group,
2015. https://doi.org/10.1038/nn.4023.
ieee: S. Siegert et al., “The schizophrenia risk gene product miR-137 alters
presynaptic plasticity,” Nature Neuroscience, vol. 18. Nature Publishing
Group, pp. 1008–1016, 2015.
ista: Siegert S, Seo J, Kwon E, Rudenko A, Cho S, Wang W, Flood Z, Martorell A,
Ericsson M, Mungenast A, Tsai L. 2015. The schizophrenia risk gene product miR-137
alters presynaptic plasticity. Nature Neuroscience. 18, 1008–1016.
mla: Siegert, Sandra, et al. “The Schizophrenia Risk Gene Product MiR-137 Alters
Presynaptic Plasticity.” Nature Neuroscience, vol. 18, Nature Publishing
Group, 2015, pp. 1008–16, doi:10.1038/nn.4023.
short: S. Siegert, J. Seo, E. Kwon, A. Rudenko, S. Cho, W. Wang, Z. Flood, A. Martorell,
M. Ericsson, A. Mungenast, L. Tsai, Nature Neuroscience 18 (2015) 1008–1016.
date_created: 2018-12-11T11:54:05Z
date_published: 2015-07-01T00:00:00Z
date_updated: 2021-01-12T06:53:18Z
day: '01'
doi: 10.1038/nn.4023
extern: 1
intvolume: ' 18'
month: '07'
page: 1008 - 1016
publication: Nature Neuroscience
publication_status: published
publisher: Nature Publishing Group
publist_id: '5308'
quality_controlled: 0
status: public
title: The schizophrenia risk gene product miR-137 alters presynaptic plasticity
type: journal_article
volume: 18
year: '2015'
...
---
_id: '1803'
abstract:
- lang: eng
text: Repeated stress has been suggested to underlie learning and memory deficits
via the basolateral amygdala (BLA) and the hippocampus; however, the functional
contribution of BLA inputs to the hippocampus and their molecular repercussions
are not well understood. Here we show that repeated stress is accompanied by generation
of the Cdk5 (cyclin-dependent kinase 5)-activator p25, up-regulation and phosphorylation
of glucocorticoid receptors, increased HDAC2 expression, and reduced expression
of memoryrelated genes in the hippocampus. A combination of optogenetic and pharmacosynthetic
approaches shows that BLA activation is both necessary and sufficient for stress-associated
molecular changes and memory impairments. Furthermore, we show that this effect
relies on direct glutamatergic projections from the BLA to the dorsal hippocampus.
Finally, we show that p25 generation is necessary for the stress-induced memory
dysfunction. Taken together, our data provide a neural circuit model for stress-induced
hippocampal memory deficits through BLA activity-dependent p25 generation.
acknowledgement: |-
AG047661; NIH; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung
NS051874; NIH; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung
SNSF; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung
author:
- first_name: Damien
full_name: Rei, Damien
last_name: Rei
- first_name: Xenos
full_name: Mason, Xenos
last_name: Mason
- first_name: Jinsoo
full_name: Seo, Jinsoo
last_name: Seo
- first_name: Johannes
full_name: Gräff, Johannes
last_name: Gräff
- first_name: Andrii
full_name: Rudenko, Andrii
last_name: Rudenko
- first_name: Jùn
full_name: Wang, Jùn
last_name: Wang
- first_name: Richard
full_name: Rueda, Richard
last_name: Rueda
- first_name: Sandra
full_name: Sandra Siegert
id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
last_name: Siegert
orcid: 0000-0001-8635-0877
- first_name: Sukhee
full_name: Cho, Sukhee
last_name: Cho
- first_name: Rebecca
full_name: Canter, Rebecca G
last_name: Canter
- first_name: Alison
full_name: Mungenast, Alison E
last_name: Mungenast
- first_name: Karl
full_name: Deisseroth, Karl A
last_name: Deisseroth
- first_name: Lihuei
full_name: Tsai, Lihuei
last_name: Tsai
citation:
ama: Rei D, Mason X, Seo J, et al. Basolateral amygdala bidirectionally modulates
stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent
pathway. PNAS. 2015;112(23):7291-7296. doi:10.1073/pnas.1415845112
apa: Rei, D., Mason, X., Seo, J., Gräff, J., Rudenko, A., Wang, J., … Tsai, L. (2015).
Basolateral amygdala bidirectionally modulates stress induced hippocampal learning
and memory deficits through a p25/Cdk5-dependent pathway. PNAS. National
Academy of Sciences. https://doi.org/10.1073/pnas.1415845112
chicago: Rei, Damien, Xenos Mason, Jinsoo Seo, Johannes Gräff, Andrii Rudenko, Jùn
Wang, Richard Rueda, et al. “Basolateral Amygdala Bidirectionally Modulates Stress
Induced Hippocampal Learning and Memory Deficits through a P25/Cdk5-Dependent
Pathway.” PNAS. National Academy of Sciences, 2015. https://doi.org/10.1073/pnas.1415845112.
ieee: D. Rei et al., “Basolateral amygdala bidirectionally modulates stress
induced hippocampal learning and memory deficits through a p25/Cdk5-dependent
pathway,” PNAS, vol. 112, no. 23. National Academy of Sciences, pp. 7291–7296,
2015.
ista: Rei D, Mason X, Seo J, Gräff J, Rudenko A, Wang J, Rueda R, Siegert S, Cho
S, Canter R, Mungenast A, Deisseroth K, Tsai L. 2015. Basolateral amygdala bidirectionally
modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent
pathway. PNAS. 112(23), 7291–7296.
mla: Rei, Damien, et al. “Basolateral Amygdala Bidirectionally Modulates Stress
Induced Hippocampal Learning and Memory Deficits through a P25/Cdk5-Dependent
Pathway.” PNAS, vol. 112, no. 23, National Academy of Sciences, 2015, pp.
7291–96, doi:10.1073/pnas.1415845112.
short: D. Rei, X. Mason, J. Seo, J. Gräff, A. Rudenko, J. Wang, R. Rueda, S. Siegert,
S. Cho, R. Canter, A. Mungenast, K. Deisseroth, L. Tsai, PNAS 112 (2015) 7291–7296.
date_created: 2018-12-11T11:54:06Z
date_published: 2015-06-09T00:00:00Z
date_updated: 2021-01-12T06:53:18Z
day: '09'
doi: 10.1073/pnas.1415845112
extern: 1
intvolume: ' 112'
issue: '23'
month: '06'
page: 7291 - 7296
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '5307'
quality_controlled: 0
status: public
title: Basolateral amygdala bidirectionally modulates stress induced hippocampal learning
and memory deficits through a p25/Cdk5-dependent pathway
type: journal_article
volume: 112
year: '2015'
...
---
_id: '1804'
abstract:
- lang: eng
text: It is known that in classical fluids turbulence typically occurs at high Reynolds
numbers. But can turbulence occur at low Reynolds numbers? Here we investigate
the transition to turbulence in the classic Taylor-Couette system in which the
rotating fluids are manufactured ferrofluids with magnetized nanoparticles embedded
in liquid carriers. We find that, in the presence of a magnetic field transverse
to the symmetry axis of the system, turbulence can occur at Reynolds numbers that
are at least one order of magnitude smaller than those in conventional fluids.
This is established by extensive computational ferrohydrodynamics through a detailed
investigation of transitions in the flow structure, and characterization of behaviors
of physical quantities such as the energy, the wave number, and the angular momentum
through the bifurcations. A finding is that, as the magnetic field is increased,
onset of turbulence can be determined accurately and reliably. Our results imply
that experimental investigation of turbulence may be feasible by using ferrofluids.
Our study of transition to and evolution of turbulence in the Taylor-Couette ferrofluidic
flow system provides insights into the challenging problem of turbulence control.
article_number: '10781'
author:
- first_name: Sebastian
full_name: Altmeyer, Sebastian
id: 2EE67FDC-F248-11E8-B48F-1D18A9856A87
last_name: Altmeyer
orcid: 0000-0001-5964-0203
- first_name: Younghae
full_name: Do, Younghae
last_name: Do
- first_name: Ying
full_name: Lai, Ying
last_name: Lai
citation:
ama: Altmeyer S, Do Y, Lai Y. Transition to turbulence in Taylor-Couette ferrofluidic
flow. Scientific Reports. 2015;5. doi:10.1038/srep10781
apa: Altmeyer, S., Do, Y., & Lai, Y. (2015). Transition to turbulence in Taylor-Couette
ferrofluidic flow. Scientific Reports. Nature Publishing Group. https://doi.org/10.1038/srep10781
chicago: Altmeyer, Sebastian, Younghae Do, and Ying Lai. “Transition to Turbulence
in Taylor-Couette Ferrofluidic Flow.” Scientific Reports. Nature Publishing
Group, 2015. https://doi.org/10.1038/srep10781.
ieee: S. Altmeyer, Y. Do, and Y. Lai, “Transition to turbulence in Taylor-Couette
ferrofluidic flow,” Scientific Reports, vol. 5. Nature Publishing Group,
2015.
ista: Altmeyer S, Do Y, Lai Y. 2015. Transition to turbulence in Taylor-Couette
ferrofluidic flow. Scientific Reports. 5, 10781.
mla: Altmeyer, Sebastian, et al. “Transition to Turbulence in Taylor-Couette Ferrofluidic
Flow.” Scientific Reports, vol. 5, 10781, Nature Publishing Group, 2015,
doi:10.1038/srep10781.
short: S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
date_created: 2018-12-11T11:54:06Z
date_published: 2015-06-12T00:00:00Z
date_updated: 2021-01-12T06:53:18Z
day: '12'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1038/srep10781
file:
- access_level: open_access
checksum: 7716f582f8c9d82d8f2bf80bf896b440
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:26Z
date_updated: 2020-07-14T12:45:16Z
file_id: '5280'
file_name: IST-2016-450-v1+1_srep10781.pdf
file_size: 2449723
relation: main_file
file_date_updated: 2020-07-14T12:45:16Z
has_accepted_license: '1'
intvolume: ' 5'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '5306'
pubrep_id: '450'
quality_controlled: '1'
scopus_import: 1
status: public
title: Transition to turbulence in Taylor-Couette ferrofluidic flow
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2015'
...
---
_id: '1805'
abstract:
- lang: eng
text: 'We consider the problem of deciding whether the persistent homology group
of a simplicial pair (K,L) can be realized as the homology H∗(X) of some complex
X with L ⊂ X ⊂ K. We show that this problem is NP-complete even if K is embedded
in double-struck R3. As a consequence, we show that it is NP-hard to simplify
level and sublevel sets of scalar functions on double-struck S3 within a given
tolerance constraint. This problem has relevance to the visualization of medical
images by isosurfaces. We also show an implication to the theory of well groups
of scalar functions: not every well group can be realized by some level set, and
deciding whether a well group can be realized is NP-hard.'
author:
- first_name: Dominique
full_name: Attali, Dominique
last_name: Attali
- first_name: Ulrich
full_name: Bauer, Ulrich
id: 2ADD483A-F248-11E8-B48F-1D18A9856A87
last_name: Bauer
orcid: 0000-0002-9683-0724
- first_name: Olivier
full_name: Devillers, Olivier
last_name: Devillers
- first_name: Marc
full_name: Glisse, Marc
last_name: Glisse
- first_name: André
full_name: Lieutier, André
last_name: Lieutier
citation:
ama: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. Homological reconstruction
and simplification in R3. Computational Geometry: Theory and Applications.
2015;48(8):606-621. doi:10.1016/j.comgeo.2014.08.010'
apa: 'Attali, D., Bauer, U., Devillers, O., Glisse, M., & Lieutier, A. (2015).
Homological reconstruction and simplification in R3. Computational Geometry:
Theory and Applications. Elsevier. https://doi.org/10.1016/j.comgeo.2014.08.010'
chicago: 'Attali, Dominique, Ulrich Bauer, Olivier Devillers, Marc Glisse, and André
Lieutier. “Homological Reconstruction and Simplification in R3.” Computational
Geometry: Theory and Applications. Elsevier, 2015. https://doi.org/10.1016/j.comgeo.2014.08.010.'
ieee: 'D. Attali, U. Bauer, O. Devillers, M. Glisse, and A. Lieutier, “Homological
reconstruction and simplification in R3,” Computational Geometry: Theory and
Applications, vol. 48, no. 8. Elsevier, pp. 606–621, 2015.'
ista: 'Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. 2015. Homological reconstruction
and simplification in R3. Computational Geometry: Theory and Applications. 48(8),
606–621.'
mla: 'Attali, Dominique, et al. “Homological Reconstruction and Simplification in
R3.” Computational Geometry: Theory and Applications, vol. 48, no. 8, Elsevier,
2015, pp. 606–21, doi:10.1016/j.comgeo.2014.08.010.'
short: 'D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, Computational
Geometry: Theory and Applications 48 (2015) 606–621.'
date_created: 2018-12-11T11:54:06Z
date_published: 2015-06-03T00:00:00Z
date_updated: 2023-02-23T10:59:19Z
day: '03'
department:
- _id: HeEd
doi: 10.1016/j.comgeo.2014.08.010
ec_funded: 1
intvolume: ' 48'
issue: '8'
language:
- iso: eng
month: '06'
oa_version: None
page: 606 - 621
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: 'Computational Geometry: Theory and Applications'
publication_status: published
publisher: Elsevier
publist_id: '5305'
quality_controlled: '1'
related_material:
record:
- id: '2812'
relation: earlier_version
status: public
scopus_import: 1
status: public
title: Homological reconstruction and simplification in R3
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2015'
...
---
_id: '1807'
abstract:
- lang: eng
text: We study a double Cahn-Hilliard type functional related to the Gross-Pitaevskii
energy of two-components Bose-Einstein condensates. In the case of large but same
order intercomponent and intracomponent coupling strengths, we prove Γ-convergence
to a perimeter minimisation functional with an inhomogeneous surface tension.
We study the asymptotic behavior of the surface tension as the ratio between the
intercomponent and intracomponent coupling strengths becomes very small or very
large and obtain good agreement with the physical literature. We obtain as a consequence,
symmetry breaking of the minimisers for the harmonic potential.
author:
- first_name: Michael
full_name: Goldman, Michael
last_name: Goldman
- first_name: Jimena
full_name: Royo-Letelier, Jimena
id: 4D3BED28-F248-11E8-B48F-1D18A9856A87
last_name: Royo-Letelier
citation:
ama: Goldman M, Royo-Letelier J. Sharp interface limit for two components Bose-Einstein
condensates. ESAIM - Control, Optimisation and Calculus of Variations.
2015;21(3):603-624. doi:10.1051/cocv/2014040
apa: Goldman, M., & Royo-Letelier, J. (2015). Sharp interface limit for two
components Bose-Einstein condensates. ESAIM - Control, Optimisation and Calculus
of Variations. EDP Sciences. https://doi.org/10.1051/cocv/2014040
chicago: Goldman, Michael, and Jimena Royo-Letelier. “Sharp Interface Limit for
Two Components Bose-Einstein Condensates.” ESAIM - Control, Optimisation and
Calculus of Variations. EDP Sciences, 2015. https://doi.org/10.1051/cocv/2014040.
ieee: M. Goldman and J. Royo-Letelier, “Sharp interface limit for two components
Bose-Einstein condensates,” ESAIM - Control, Optimisation and Calculus of Variations,
vol. 21, no. 3. EDP Sciences, pp. 603–624, 2015.
ista: Goldman M, Royo-Letelier J. 2015. Sharp interface limit for two components
Bose-Einstein condensates. ESAIM - Control, Optimisation and Calculus of Variations.
21(3), 603–624.
mla: Goldman, Michael, and Jimena Royo-Letelier. “Sharp Interface Limit for Two
Components Bose-Einstein Condensates.” ESAIM - Control, Optimisation and Calculus
of Variations, vol. 21, no. 3, EDP Sciences, 2015, pp. 603–24, doi:10.1051/cocv/2014040.
short: M. Goldman, J. Royo-Letelier, ESAIM - Control, Optimisation and Calculus
of Variations 21 (2015) 603–624.
date_created: 2018-12-11T11:54:07Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2021-01-12T06:53:20Z
day: '01'
department:
- _id: RoSe
doi: 10.1051/cocv/2014040
intvolume: ' 21'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1401.1727
month: '05'
oa: 1
oa_version: Preprint
page: 603 - 624
publication: ESAIM - Control, Optimisation and Calculus of Variations
publication_status: published
publisher: EDP Sciences
publist_id: '5303'
quality_controlled: '1'
scopus_import: 1
status: public
title: Sharp interface limit for two components Bose-Einstein condensates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2015'
...
---
_id: '1808'
article_number: '7'
author:
- first_name: Ashutosh
full_name: Gupta, Ashutosh
id: 335E5684-F248-11E8-B48F-1D18A9856A87
last_name: Gupta
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: Gupta A, Henzinger TA. Guest editors’ introduction to special issue on computational
methods in systems biology. ACM Transactions on Modeling and Computer Simulation.
2015;25(2). doi:10.1145/2745799
apa: Gupta, A., & Henzinger, T. A. (2015). Guest editors’ introduction to special
issue on computational methods in systems biology. ACM Transactions on Modeling
and Computer Simulation. ACM. https://doi.org/10.1145/2745799
chicago: Gupta, Ashutosh, and Thomas A Henzinger. “Guest Editors’ Introduction to
Special Issue on Computational Methods in Systems Biology.” ACM Transactions
on Modeling and Computer Simulation. ACM, 2015. https://doi.org/10.1145/2745799.
ieee: A. Gupta and T. A. Henzinger, “Guest editors’ introduction to special issue
on computational methods in systems biology,” ACM Transactions on Modeling
and Computer Simulation, vol. 25, no. 2. ACM, 2015.
ista: Gupta A, Henzinger TA. 2015. Guest editors’ introduction to special issue
on computational methods in systems biology. ACM Transactions on Modeling and
Computer Simulation. 25(2), 7.
mla: Gupta, Ashutosh, and Thomas A. Henzinger. “Guest Editors’ Introduction to Special
Issue on Computational Methods in Systems Biology.” ACM Transactions on Modeling
and Computer Simulation, vol. 25, no. 2, 7, ACM, 2015, doi:10.1145/2745799.
short: A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation
25 (2015).
date_created: 2018-12-11T11:54:07Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2021-01-12T06:53:20Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/2745799
intvolume: ' 25'
issue: '2'
language:
- iso: eng
month: '05'
oa_version: None
publication: ACM Transactions on Modeling and Computer Simulation
publication_status: published
publisher: ACM
publist_id: '5302'
quality_controlled: '1'
status: public
title: Guest editors' introduction to special issue on computational methods in systems
biology
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2015'
...
---
_id: '1809'
abstract:
- lang: eng
text: 'Background: Indirect genetic effects (IGEs) occur when genes expressed in
one individual alter the expression of traits in social partners. Previous studies
focused on the evolutionary consequences and evolutionary dynamics of IGEs, using
equilibrium solutions to predict phenotypes in subsequent generations. However,
whether or not such steady states may be reached may depend on the dynamics of
interactions themselves. Results: In our study, we focus on the dynamics of social
interactions and indirect genetic effects and investigate how they modify phenotypes
over time. Unlike previous IGE studies, we do not analyse evolutionary dynamics;
rather we consider within-individual phenotypic changes, also referred to as phenotypic
plasticity. We analyse iterative interactions, when individuals interact in a
series of discontinuous events, and investigate the stability of steady state
solutions and the dependence on model parameters, such as population size, strength,
and the nature of interactions. We show that for interactions where a feedback
loop occurs, the possible parameter space of interaction strength is fairly limited,
affecting the evolutionary consequences of IGEs. We discuss the implications of
our results for current IGE model predictions and their limitations.'
author:
- first_name: Barbora
full_name: Trubenova, Barbora
id: 42302D54-F248-11E8-B48F-1D18A9856A87
last_name: Trubenova
orcid: 0000-0002-6873-2967
- first_name: Sebastian
full_name: Novak, Sebastian
id: 461468AE-F248-11E8-B48F-1D18A9856A87
last_name: Novak
- first_name: Reinmar
full_name: Hager, Reinmar
last_name: Hager
citation:
ama: Trubenova B, Novak S, Hager R. Indirect genetic effects and the dynamics of
social interactions. PLoS One. 2015;10(5). doi:10.1371/journal.pone.0126907
apa: Trubenova, B., Novak, S., & Hager, R. (2015). Indirect genetic effects
and the dynamics of social interactions. PLoS One. Public Library of Science.
https://doi.org/10.1371/journal.pone.0126907
chicago: Trubenova, Barbora, Sebastian Novak, and Reinmar Hager. “Indirect Genetic
Effects and the Dynamics of Social Interactions.” PLoS One. Public Library
of Science, 2015. https://doi.org/10.1371/journal.pone.0126907.
ieee: B. Trubenova, S. Novak, and R. Hager, “Indirect genetic effects and the dynamics
of social interactions,” PLoS One, vol. 10, no. 5. Public Library of Science,
2015.
ista: Trubenova B, Novak S, Hager R. 2015. Indirect genetic effects and the dynamics
of social interactions. PLoS One. 10(5).
mla: Trubenova, Barbora, et al. “Indirect Genetic Effects and the Dynamics of Social
Interactions.” PLoS One, vol. 10, no. 5, Public Library of Science, 2015,
doi:10.1371/journal.pone.0126907.
short: B. Trubenova, S. Novak, R. Hager, PLoS One 10 (2015).
date_created: 2018-12-11T11:54:07Z
date_published: 2015-05-18T00:00:00Z
date_updated: 2023-02-23T14:07:48Z
day: '18'
ddc:
- '570'
- '576'
department:
- _id: NiBa
doi: 10.1371/journal.pone.0126907
file:
- access_level: open_access
checksum: d3a4a58ef4bd3b3e2f32b7fd7af4a743
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:07Z
date_updated: 2020-07-14T12:45:17Z
file_id: '4730'
file_name: IST-2016-453-v1+1_journal.pone.0126907.pdf
file_size: 2748982
relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
intvolume: ' 10'
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '5299'
pubrep_id: '453'
quality_controlled: '1'
related_material:
record:
- id: '9715'
relation: research_data
status: public
- id: '9772'
relation: research_data
status: public
scopus_import: 1
status: public
title: Indirect genetic effects and the dynamics of social interactions
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2015'
...
---
_id: '1810'
abstract:
- lang: eng
text: Combining antibiotics is a promising strategy for increasing treatment efficacy
and for controlling resistance evolution. When drugs are combined, their effects
on cells may be amplified or weakened, that is the drugs may show synergistic
or antagonistic interactions. Recent work revealed the underlying mechanisms of
such drug interactions by elucidating the drugs'; joint effects on cell physiology.
Moreover, new treatment strategies that use drug combinations to exploit evolutionary
tradeoffs were shown to affect the rate of resistance evolution in predictable
ways. High throughput studies have further identified drug candidates based on
their interactions with established antibiotics and general principles that enable
the prediction of drug interactions were suggested. Overall, the conceptual and
technical foundation for the rational design of potent drug combinations is rapidly
developing.
author:
- first_name: Mark Tobias
full_name: Bollenbach, Mark Tobias
id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
last_name: Bollenbach
orcid: 0000-0003-4398-476X
citation:
ama: 'Bollenbach MT. Antimicrobial interactions: Mechanisms and implications for
drug discovery and resistance evolution. Current Opinion in Microbiology.
2015;27:1-9. doi:10.1016/j.mib.2015.05.008'
apa: 'Bollenbach, M. T. (2015). Antimicrobial interactions: Mechanisms and implications
for drug discovery and resistance evolution. Current Opinion in Microbiology.
Elsevier. https://doi.org/10.1016/j.mib.2015.05.008'
chicago: 'Bollenbach, Mark Tobias. “Antimicrobial Interactions: Mechanisms and Implications
for Drug Discovery and Resistance Evolution.” Current Opinion in Microbiology.
Elsevier, 2015. https://doi.org/10.1016/j.mib.2015.05.008.'
ieee: 'M. T. Bollenbach, “Antimicrobial interactions: Mechanisms and implications
for drug discovery and resistance evolution,” Current Opinion in Microbiology,
vol. 27. Elsevier, pp. 1–9, 2015.'
ista: 'Bollenbach MT. 2015. Antimicrobial interactions: Mechanisms and implications
for drug discovery and resistance evolution. Current Opinion in Microbiology.
27, 1–9.'
mla: 'Bollenbach, Mark Tobias. “Antimicrobial Interactions: Mechanisms and Implications
for Drug Discovery and Resistance Evolution.” Current Opinion in Microbiology,
vol. 27, Elsevier, 2015, pp. 1–9, doi:10.1016/j.mib.2015.05.008.'
short: M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
date_created: 2018-12-11T11:54:08Z
date_published: 2015-06-01T00:00:00Z
date_updated: 2021-01-12T06:53:21Z
day: '01'
ddc:
- '570'
department:
- _id: ToBo
doi: 10.1016/j.mib.2015.05.008
ec_funded: 1
file:
- access_level: open_access
checksum: 1683bb0f42ef892a5b3b71a050d65d25
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:23Z
date_updated: 2020-07-14T12:45:17Z
file_id: '5277'
file_name: IST-2016-493-v1+1_1-s2.0-S1369527415000594-main.pdf
file_size: 1047255
relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
intvolume: ' 27'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1 - 9
project:
- _id: 25E9AF9E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27201-B22
name: Revealing the mechanisms underlying drug interactions
- _id: 25E83C2C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '303507'
name: Optimality principles in responses to antibiotics
- _id: 25EB3A80-B435-11E9-9278-68D0E5697425
grant_number: RGP0042/2013
name: Revealing the fundamental limits of cell growth
publication: Current Opinion in Microbiology
publication_status: published
publisher: Elsevier
publist_id: '5298'
pubrep_id: '493'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Antimicrobial interactions: Mechanisms and implications for drug discovery
and resistance evolution'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2015'
...
---
_id: '1811'
abstract:
- lang: eng
text: Atomic form factors are widely used for the characterization of targets and
specimens, from crystallography to biology. By using recent mathematical results,
here we derive an analytical expression for the atomic form factor within the
independent particle model constructed from nonrelativistic screened hydrogenic
wave functions. The range of validity of this analytical expression is checked
by comparing the analytically obtained form factors with the ones obtained within
the Hartee-Fock method. As an example, we apply our analytical expression for
the atomic form factor to evaluate the differential cross section for Rayleigh
scattering off neutral atoms.
acknowledgement: The research leading to these results has received funding from the
People Programme (Marie Curie Actions) of the European Union’s Seventh Framework
Programme (FP7/2007-2013) under REA grant agreement n◦ [291734]. F.F. acknowledges
support by Fundação de Amparo à Pesquisa do estado de Minas Gerais (FAPEMIG), by
Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), and by the
Austrian Science Fund (FWF) through the START Grant No. Y 591-N16.
article_number: '052105'
author:
- first_name: Laleh
full_name: Safari, Laleh
id: 3C325E5E-F248-11E8-B48F-1D18A9856A87
last_name: Safari
- first_name: José
full_name: Santos, José
last_name: Santos
- first_name: Pedro
full_name: Amaro, Pedro
last_name: Amaro
- first_name: Kari
full_name: Jänkälä, Kari
last_name: Jänkälä
- first_name: Filippo
full_name: Fratini, Filippo
last_name: Fratini
citation:
ama: 'Safari L, Santos J, Amaro P, Jänkälä K, Fratini F. Analytical evaluation of
atomic form factors: Application to Rayleigh scattering. Journal of Mathematical
Physics. 2015;56(5). doi:10.1063/1.4921227'
apa: 'Safari, L., Santos, J., Amaro, P., Jänkälä, K., & Fratini, F. (2015).
Analytical evaluation of atomic form factors: Application to Rayleigh scattering.
Journal of Mathematical Physics. American Institute of Physics. https://doi.org/10.1063/1.4921227'
chicago: 'Safari, Laleh, José Santos, Pedro Amaro, Kari Jänkälä, and Filippo Fratini.
“Analytical Evaluation of Atomic Form Factors: Application to Rayleigh Scattering.”
Journal of Mathematical Physics. American Institute of Physics, 2015. https://doi.org/10.1063/1.4921227.'
ieee: 'L. Safari, J. Santos, P. Amaro, K. Jänkälä, and F. Fratini, “Analytical evaluation
of atomic form factors: Application to Rayleigh scattering,” Journal of Mathematical
Physics, vol. 56, no. 5. American Institute of Physics, 2015.'
ista: 'Safari L, Santos J, Amaro P, Jänkälä K, Fratini F. 2015. Analytical evaluation
of atomic form factors: Application to Rayleigh scattering. Journal of Mathematical
Physics. 56(5), 052105.'
mla: 'Safari, Laleh, et al. “Analytical Evaluation of Atomic Form Factors: Application
to Rayleigh Scattering.” Journal of Mathematical Physics, vol. 56, no.
5, 052105, American Institute of Physics, 2015, doi:10.1063/1.4921227.'
short: L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical
Physics 56 (2015).
date_created: 2018-12-11T11:54:08Z
date_published: 2015-05-20T00:00:00Z
date_updated: 2021-01-12T06:53:21Z
day: '20'
department:
- _id: MiLe
doi: 10.1063/1.4921227
ec_funded: 1
intvolume: ' 56'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/1409.0110
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Journal of Mathematical Physics
publication_status: published
publisher: American Institute of Physics
publist_id: '5295'
scopus_import: 1
status: public
title: 'Analytical evaluation of atomic form factors: Application to Rayleigh scattering'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 56
year: '2015'
...
---
_id: '1812'
abstract:
- lang: eng
text: "We investigate the occurrence of rotons in a quadrupolar Bose–Einstein condensate
confined to two dimensions. Depending on the particle density, the ratio of the
contact and quadrupole–quadrupole interactions, and the alignment of the quadrupole
moments with respect to the confinement plane, the dispersion relation features
two or four point-like roton minima or one ring-shaped minimum. We map out the
entire parameter space of the roton behavior and identify the instability regions.
We propose to observe the exotic rotons by monitoring the characteristic density
wave dynamics resulting from a short local perturbation, and discuss the possibilities
to detect the predicted effects in state-of-the-art experiments with ultracold
homonuclear molecules.\r\n"
article_number: '045005'
article_processing_charge: No
author:
- first_name: Martin
full_name: Lahrz, Martin
last_name: Lahrz
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Ludwig
full_name: Mathey, Ludwig
last_name: Mathey
citation:
ama: Lahrz M, Lemeshko M, Mathey L. Exotic roton excitations in quadrupolar Bose–Einstein
condensates . New Journal of Physics. 2015;17(4). doi:10.1088/1367-2630/17/4/045005
apa: Lahrz, M., Lemeshko, M., & Mathey, L. (2015). Exotic roton excitations
in quadrupolar Bose–Einstein condensates . New Journal of Physics. IOP
Publishing Ltd. https://doi.org/10.1088/1367-2630/17/4/045005
chicago: Lahrz, Martin, Mikhail Lemeshko, and Ludwig Mathey. “Exotic Roton Excitations
in Quadrupolar Bose–Einstein Condensates .” New Journal of Physics. IOP
Publishing Ltd., 2015. https://doi.org/10.1088/1367-2630/17/4/045005.
ieee: M. Lahrz, M. Lemeshko, and L. Mathey, “Exotic roton excitations in quadrupolar
Bose–Einstein condensates ,” New Journal of Physics, vol. 17, no. 4. IOP
Publishing Ltd., 2015.
ista: Lahrz M, Lemeshko M, Mathey L. 2015. Exotic roton excitations in quadrupolar
Bose–Einstein condensates . New Journal of Physics. 17(4), 045005.
mla: Lahrz, Martin, et al. “Exotic Roton Excitations in Quadrupolar Bose–Einstein
Condensates .” New Journal of Physics, vol. 17, no. 4, 045005, IOP Publishing
Ltd., 2015, doi:10.1088/1367-2630/17/4/045005.
short: M. Lahrz, M. Lemeshko, L. Mathey, New Journal of Physics 17 (2015).
date_created: 2018-12-11T11:54:09Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2021-01-12T06:53:22Z
day: '01'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1088/1367-2630/17/4/045005
file:
- access_level: open_access
checksum: 551f751a75b39b89a1db2f7f498f9a49
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:59Z
date_updated: 2020-07-14T12:45:17Z
file_id: '5184'
file_name: IST-2016-446-v1+1_document.pdf
file_size: 1900925
relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
intvolume: ' 17'
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: New Journal of Physics
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '5294'
pubrep_id: '446'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Exotic roton excitations in quadrupolar Bose–Einstein condensates '
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2015'
...