---
_id: '383'
abstract:
- lang: eng
text: In the quest for more efficient thermoelectric material able to convert thermal
to electrical energy and vice versa, composites that combine a semiconductor host
having a large Seebeck coefficient with metal nanodomains that provide phonon
scattering and free charge carriers are particularly appealing. Here, we present
our experimental results on the thermal and electrical transport properties of
PbS-metal composites produced by a versatile particle blending procedure, and
where the metal work function allows injecting electrons to the intrinsic PbS
host. We compare the thermoelectric performance of composites with microcrystalline
or nanocrystalline structures. The electrical conductivity of the microcrystalline
host can be increased several orders of magnitude with the metal inclusion, while
relatively high Seebeck coefficient can be simultaneously conserved. On the other
hand, in nanostructured materials, the host crystallites are not able to sustain
a band bending at its interface with the metal, becoming flooded with electrons.
This translates into even higher electrical conductivities than the microcrystalline
material, but at the expense of lower Seebeck coefficient values.
author:
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Doris
full_name: Cadavid, Doris
last_name: Cadavid
- first_name: Maria
full_name: Ibanez Sabate, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibanez Sabate
orcid: 0000-0001-5013-2843
- first_name: Silvia
full_name: Ortega, Silvia
last_name: Ortega
- first_name: Sara
full_name: Márti Sánchez, Sara
last_name: Márti Sánchez
- first_name: Oleksander
full_name: Dobrozhan, Oleksander
last_name: Dobrozhan
- first_name: Maksym
full_name: Kovalenko, Maksym
last_name: Kovalenko
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Liu Y, Cadavid D, Ibáñez M, et al. Thermoelectric properties of semiconductor-metal
composites produced by particle blending. Applied Physics Letters. 2016;4.
doi:https://doi.org/10.1063/1.4961679
apa: Liu, Y., Cadavid, D., Ibáñez, M., Ortega, S., Márti Sánchez, S., Dobrozhan,
O., … Cabot, A. (2016). Thermoelectric properties of semiconductor-metal composites
produced by particle blending. Applied Physics Letters. American Institute
of Physics. https://doi.org/10.1063/1.4961679
chicago: Liu, Yu, Doris Cadavid, Maria Ibáñez, Silvia Ortega, Sara Márti Sánchez,
Oleksander Dobrozhan, Maksym Kovalenko, Jordi Arbiol, and Andreu Cabot. “Thermoelectric
Properties of Semiconductor-Metal Composites Produced by Particle Blending.” Applied
Physics Letters. American Institute of Physics, 2016. https://doi.org/10.1063/1.4961679.
ieee: Y. Liu et al., “Thermoelectric properties of semiconductor-metal composites
produced by particle blending,” Applied Physics Letters, vol. 4. American
Institute of Physics, 2016.
ista: Liu Y, Cadavid D, Ibáñez M, Ortega S, Márti Sánchez S, Dobrozhan O, Kovalenko
M, Arbiol J, Cabot A. 2016. Thermoelectric properties of semiconductor-metal composites
produced by particle blending. Applied Physics Letters. 4.
mla: Liu, Yu, et al. “Thermoelectric Properties of Semiconductor-Metal Composites
Produced by Particle Blending.” Applied Physics Letters, vol. 4, American
Institute of Physics, 2016, doi:https://doi.org/10.1063/1.4961679.
short: Y. Liu, D. Cadavid, M. Ibáñez, S. Ortega, S. Márti Sánchez, O. Dobrozhan,
M. Kovalenko, J. Arbiol, A. Cabot, Applied Physics Letters 4 (2016).
date_created: 2018-12-11T11:46:09Z
date_published: 2016-08-29T00:00:00Z
date_updated: 2021-01-12T07:52:30Z
day: '29'
doi: https://doi.org/10.1063/1.4961679
extern: '1'
intvolume: ' 4'
language:
- iso: eng
month: '08'
oa_version: None
publication: Applied Physics Letters
publication_status: published
publisher: American Institute of Physics
publist_id: '7446'
status: public
title: Thermoelectric properties of semiconductor-metal composites produced by particle
blending
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2016'
...
---
_id: '389'
abstract:
- lang: eng
text: The coherent optical manipulation of solids is emerging as a promising way
to engineer novel quantum states of matter. The strong time-periodic potential
of intense laser light can be used to generate hybrid photon-electron states.
Interaction of light with Bloch states leads to Floquet-Bloch states, which are
essential in realizing new photo-induced quantum phases. Similarly, dressing of
free-electron states near the surface of a solid generates Volkov states, which
are used to study nonlinear optics in atoms and semiconductors. The interaction
of these two dynamic states with each other remains an open experimental problem.
Here we use time- and angle-resolved photoemission spectroscopy (Tr-ARPES) to
selectively study the transition between these two states on the surface of the
topological insulator Bi2Se3. We find that the coupling between the two strongly
depends on the electron momentum, providing a route to enhance or inhibit it.
Moreover, by controlling the light polarization we can negate Volkov states to
generate pure Floquet-Bloch states. This work establishes a systematic path for
the coherent manipulation of solids via light-matter interaction.
acknowledgement: The authors would like to thank C. Lee for useful discussions. This
work is supported by US Department of Energy (DOE), Basic Energy Sciences, Division
of Materials Sciences and Engineering (experimental set-up, data acquisition and
theory), Army Research Office (electron spectrometer) and by the Gordon and Betty
Moore Foundation’s EPiQS Initiative through Grant GBMF4540 (data analysis).
author:
- first_name: Fahad
full_name: Mahmood, Fahad
last_name: Mahmood
- first_name: Ching
full_name: Chan, Ching
last_name: Chan
- first_name: Zhanybek
full_name: Alpichshev, Zhanybek
id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
last_name: Alpichshev
orcid: 0000-0002-7183-5203
- first_name: Dillon
full_name: Gardner, Dillon
last_name: Gardner
- first_name: Young
full_name: Lee, Young
last_name: Lee
- first_name: Patrick
full_name: Lee, Patrick
last_name: Lee
- first_name: Nuh
full_name: Gedik, Nuh
last_name: Gedik
citation:
ama: Mahmood F, Chan C, Alpichshev Z, et al. Selective scattering between Floquet
Bloch and Volkov states in a topological insulator. Nature Physics. 2016;12(4):306-310.
doi:10.1038/nphys3609
apa: Mahmood, F., Chan, C., Alpichshev, Z., Gardner, D., Lee, Y., Lee, P., &
Gedik, N. (2016). Selective scattering between Floquet Bloch and Volkov states
in a topological insulator. Nature Physics. Nature Publishing Group. https://doi.org/10.1038/nphys3609
chicago: Mahmood, Fahad, Ching Chan, Zhanybek Alpichshev, Dillon Gardner, Young
Lee, Patrick Lee, and Nuh Gedik. “Selective Scattering between Floquet Bloch and
Volkov States in a Topological Insulator.” Nature Physics. Nature Publishing
Group, 2016. https://doi.org/10.1038/nphys3609.
ieee: F. Mahmood et al., “Selective scattering between Floquet Bloch and
Volkov states in a topological insulator,” Nature Physics, vol. 12, no.
4. Nature Publishing Group, pp. 306–310, 2016.
ista: Mahmood F, Chan C, Alpichshev Z, Gardner D, Lee Y, Lee P, Gedik N. 2016. Selective
scattering between Floquet Bloch and Volkov states in a topological insulator.
Nature Physics. 12(4), 306–310.
mla: Mahmood, Fahad, et al. “Selective Scattering between Floquet Bloch and Volkov
States in a Topological Insulator.” Nature Physics, vol. 12, no. 4, Nature
Publishing Group, 2016, pp. 306–10, doi:10.1038/nphys3609.
short: F. Mahmood, C. Chan, Z. Alpichshev, D. Gardner, Y. Lee, P. Lee, N. Gedik,
Nature Physics 12 (2016) 306–310.
date_created: 2018-12-11T11:46:11Z
date_published: 2016-04-01T00:00:00Z
date_updated: 2021-01-12T07:52:59Z
day: '01'
doi: 10.1038/nphys3609
extern: '1'
intvolume: ' 12'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1512.05714
month: '04'
oa: 1
oa_version: None
page: 306 - 310
publication: Nature Physics
publication_status: published
publisher: Nature Publishing Group
publist_id: '7440'
status: public
title: Selective scattering between Floquet Bloch and Volkov states in a topological
insulator
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2016'
...
---
_id: '390'
abstract:
- lang: eng
text: In the underdoped copper-oxides, high-temperature superconductivity condenses
from a nonconventional metallic "pseudogap" phase that exhibits a variety
of non-Fermi liquid properties. Recently, it has become clear that a charge density
wave (CDW) phase exists within the pseudogap regime. This CDW coexists and competes
with superconductivity (SC) below the transition temperature Tc, suggesting that
these two orders are intimately related. Here we show that the condensation of
the superfluid from this unconventional precursor is reflected in deviations from
the predictions of BSC theory regarding the recombination rate of quasiparticles.
We report a detailed investigation of the quasiparticle (QP) recombination lifetime,
τqp, as a function of temperature and magnetic field in underdoped HgBa2CuO4+δ
(Hg-1201) and YBa2Cu3O6+x (YBCO) single crystals by ultrafast time-resolved reflectivity.
We find that τqp (T) exhibits a local maximum in a small temperature window near
Tc that is prominent in underdoped samples with coexisting charge order and vanishes
with application of a small magnetic field. We explain this unusual, non-BCS behavior
by positing that Tc marks a transition from phase-fluctuating SC/CDW composite
order above to a SC/CDW condensate below. Our results suggest that the superfluid
in underdoped cuprates is a condensate of coherently-mixed particle-particle and
particle-hole pairs.
author:
- first_name: James
full_name: Hinton, James
last_name: Hinton
- first_name: E
full_name: Thewalt, E
last_name: Thewalt
- first_name: Zhanybek
full_name: Alpichshev, Zhanybek
id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
last_name: Alpichshev
orcid: 0000-0002-7183-5203
- first_name: Fahad
full_name: Mahmood, Fahad
last_name: Mahmood
- first_name: Jake
full_name: Koralek, Jake
last_name: Koralek
- first_name: Mun
full_name: Chan, Mun
last_name: Chan
- first_name: Michael
full_name: Veit, Michael
last_name: Veit
- first_name: Chelsey
full_name: Dorow, Chelsey
last_name: Dorow
- first_name: Neven
full_name: Barišić, Neven
last_name: Barišić
- first_name: Alexander
full_name: Kemper, Alexander
last_name: Kemper
- first_name: Doug
full_name: Bonn, Doug
last_name: Bonn
- first_name: Walter
full_name: Hardy, Walter
last_name: Hardy
- first_name: Ruixing
full_name: Liang, Ruixing
last_name: Liang
- first_name: Nuh
full_name: Gedik, Nuh
last_name: Gedik
- first_name: Martin
full_name: Greven, Martin
last_name: Greven
- first_name: Alessandra
full_name: Lanzara, Alessandra
last_name: Lanzara
- first_name: Joseph
full_name: Orenstein, Joseph
last_name: Orenstein
citation:
ama: Hinton J, Thewalt E, Alpichshev Z, et al. The rate of quasiparticle recombination
probes the onset of coherence in cuprate superconductors. Scientific Reports.
2016;6. doi:10.1038/srep23610
apa: Hinton, J., Thewalt, E., Alpichshev, Z., Mahmood, F., Koralek, J., Chan, M.,
… Orenstein, J. (2016). The rate of quasiparticle recombination probes the onset
of coherence in cuprate superconductors. Scientific Reports. Nature Publishing
Group. https://doi.org/10.1038/srep23610
chicago: Hinton, James, E Thewalt, Zhanybek Alpichshev, Fahad Mahmood, Jake Koralek,
Mun Chan, Michael Veit, et al. “The Rate of Quasiparticle Recombination Probes
the Onset of Coherence in Cuprate Superconductors.” Scientific Reports.
Nature Publishing Group, 2016. https://doi.org/10.1038/srep23610.
ieee: J. Hinton et al., “The rate of quasiparticle recombination probes the
onset of coherence in cuprate superconductors,” Scientific Reports, vol.
6. Nature Publishing Group, 2016.
ista: Hinton J, Thewalt E, Alpichshev Z, Mahmood F, Koralek J, Chan M, Veit M, Dorow
C, Barišić N, Kemper A, Bonn D, Hardy W, Liang R, Gedik N, Greven M, Lanzara A,
Orenstein J. 2016. The rate of quasiparticle recombination probes the onset of
coherence in cuprate superconductors. Scientific Reports. 6.
mla: Hinton, James, et al. “The Rate of Quasiparticle Recombination Probes the Onset
of Coherence in Cuprate Superconductors.” Scientific Reports, vol. 6, Nature
Publishing Group, 2016, doi:10.1038/srep23610.
short: J. Hinton, E. Thewalt, Z. Alpichshev, F. Mahmood, J. Koralek, M. Chan, M.
Veit, C. Dorow, N. Barišić, A. Kemper, D. Bonn, W. Hardy, R. Liang, N. Gedik,
M. Greven, A. Lanzara, J. Orenstein, Scientific Reports 6 (2016).
date_created: 2018-12-11T11:46:12Z
date_published: 2016-04-13T00:00:00Z
date_updated: 2021-01-12T07:53:03Z
day: '13'
doi: 10.1038/srep23610
extern: '1'
intvolume: ' 6'
language:
- iso: eng
month: '04'
oa_version: None
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '7439'
status: public
title: The rate of quasiparticle recombination probes the onset of coherence in cuprate
superconductors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2016'
...
---
_id: '460'
abstract:
- lang: eng
text: NF-κB signaling is a central pathway of immunity and integrates signal transduction
upon a wide array of inflammatory stimuli. Noncanonical NF-κB signaling is activated
by a small subset of TNF family receptors and characterized by NF-κB2/p52 transcriptional
activity. The medical relevance of this pathway has recently re-emerged from the
discovery of primary immunodeficiency patients that have loss-of-function mutations
in the MAP3K14 gene encoding NIK. Nevertheless, knowledge of protein interactions
that regulate noncanonical NF-κB signaling is sparse. Here we report a detailed
state-of-the-art mass spectrometry-based protein–protein interaction network including
the noncanonical NF-κB signaling nodes TRAF2, TRAF3, IKKα, NIK, and NF-κB2/p100.
The value of the data set was confirmed by the identification of interactions
already known to regulate this pathway. In addition, a remarkable number of novel
interactors were identified. We provide validation of the novel NIK and IKKα interactor
FKBP8, which may regulate processes downstream of noncanonical NF-κB signaling.
To understand perturbed noncanonical NF-κB signaling in the context of misregulated
NIK in disease, we also provide a differential interactome of NIK mutants that
cause immunodeficiency. Altogether, this data set not only provides critical insight
into how protein–protein interactions can regulate immune signaling but also offers
a novel resource on noncanonical NF-κB signaling.
acknowledgement: "Austrian Science Fund (FWF) Lise Meitner Program Fellowship (FWF
M-1809, to K.L.W.), FWF Infect-ERA framework (I-1620_B22, to S.K.), European Research
Council (ERC StG 310857, to K.B.)\nWe thank Jacques Colinge, André C. Müller, and
Peter Májek for fruitful discussions and Elisabeth Salzer and Kate G. Ackermann
for critically reading the manuscript. We thank Giulio Superti-Furga for providing
pTO-SII-HA-GW plasmids. \n\n"
author:
- first_name: Katharina
full_name: Willmann, Katharina L
last_name: Willmann
- first_name: Roberto
full_name: Roberto Sacco
id: 42C9F57E-F248-11E8-B48F-1D18A9856A87
last_name: Sacco
- first_name: Rui
full_name: Martins, Rui
last_name: Martins
- first_name: Wojciech
full_name: Garncarz, Wojciech
last_name: Garncarz
- first_name: Ana
full_name: Krolo, Ana
last_name: Krolo
- first_name: Sylvia
full_name: Knapp, Sylvia
last_name: Knapp
- first_name: Keiryn
full_name: Bennett, Keiryn L
last_name: Bennett
- first_name: Kaan
full_name: Boztug, Kaan
last_name: Boztug
citation:
ama: Willmann K, Sacco R, Martins R, et al. Expanding the interactome of the noncanonical
NF-κB signaling pathway. Journal of Proteome Research. 2016;15(9):2900-2909.
doi:10.1021/acs.jproteome.5b01004
apa: Willmann, K., Sacco, R., Martins, R., Garncarz, W., Krolo, A., Knapp, S., …
Boztug, K. (2016). Expanding the interactome of the noncanonical NF-κB signaling
pathway. Journal of Proteome Research. American Chemical Society. https://doi.org/10.1021/acs.jproteome.5b01004
chicago: Willmann, Katharina, Roberto Sacco, Rui Martins, Wojciech Garncarz, Ana
Krolo, Sylvia Knapp, Keiryn Bennett, and Kaan Boztug. “Expanding the Interactome
of the Noncanonical NF-ΚB Signaling Pathway.” Journal of Proteome Research.
American Chemical Society, 2016. https://doi.org/10.1021/acs.jproteome.5b01004.
ieee: K. Willmann et al., “Expanding the interactome of the noncanonical
NF-κB signaling pathway,” Journal of Proteome Research, vol. 15, no. 9.
American Chemical Society, pp. 2900–2909, 2016.
ista: Willmann K, Sacco R, Martins R, Garncarz W, Krolo A, Knapp S, Bennett K, Boztug
K. 2016. Expanding the interactome of the noncanonical NF-κB signaling pathway.
Journal of Proteome Research. 15(9), 2900–2909.
mla: Willmann, Katharina, et al. “Expanding the Interactome of the Noncanonical
NF-ΚB Signaling Pathway.” Journal of Proteome Research, vol. 15, no. 9,
American Chemical Society, 2016, pp. 2900–09, doi:10.1021/acs.jproteome.5b01004.
short: K. Willmann, R. Sacco, R. Martins, W. Garncarz, A. Krolo, S. Knapp, K. Bennett,
K. Boztug, Journal of Proteome Research 15 (2016) 2900–2909.
date_created: 2018-12-11T11:46:36Z
date_published: 2016-07-15T00:00:00Z
date_updated: 2021-01-12T08:00:24Z
day: '15'
doi: 10.1021/acs.jproteome.5b01004
extern: 1
intvolume: ' 15'
issue: '9'
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5295629/
month: '07'
oa: 1
page: 2900 - 2909
publication: Journal of Proteome Research
publication_status: published
publisher: American Chemical Society
publist_id: '7361'
quality_controlled: 0
status: public
title: Expanding the interactome of the noncanonical NF-κB signaling pathway
type: journal_article
volume: 15
year: '2016'
...
---
_id: '478'
abstract:
- lang: eng
text: 'Magic: the Gathering is a game about magical combat for any number of players.
Formally it is a zero-sum, imperfect information stochastic game that consists
of a potentially unbounded number of steps. We consider the problem of deciding
if a move is legal in a given single step of Magic. We show that the problem is
(a) coNP-complete in general; and (b) in P if either of two small sets of cards
are not used. Our lower bound holds even for single-player Magic games. The significant
aspects of our results are as follows: First, in most real-life game problems,
the task of deciding whether a given move is legal in a single step is trivial,
and the computationally hard task is to find the best sequence of legal moves
in the presence of multiple players. In contrast, quite uniquely our hardness
result holds for single step and with only one-player. Second, we establish efficient
algorithms for important special cases of Magic.'
alternative_title:
- Frontiers in Artificial Intelligence and Applications
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Rasmus
full_name: Ibsen-Jensen, Rasmus
id: 3B699956-F248-11E8-B48F-1D18A9856A87
last_name: Ibsen-Jensen
orcid: 0000-0003-4783-0389
citation:
ama: 'Chatterjee K, Ibsen-Jensen R. The complexity of deciding legality of a single
step of magic: The gathering. In: Vol 285. IOS Press; 2016:1432-1439. doi:10.3233/978-1-61499-672-9-1432'
apa: 'Chatterjee, K., & Ibsen-Jensen, R. (2016). The complexity of deciding
legality of a single step of magic: The gathering (Vol. 285, pp. 1432–1439). Presented
at the ECAI: European Conference on Artificial Intelligence, The Hague, Netherlands:
IOS Press. https://doi.org/10.3233/978-1-61499-672-9-1432'
chicago: 'Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. “The Complexity of Deciding
Legality of a Single Step of Magic: The Gathering,” 285:1432–39. IOS Press, 2016.
https://doi.org/10.3233/978-1-61499-672-9-1432.'
ieee: 'K. Chatterjee and R. Ibsen-Jensen, “The complexity of deciding legality of
a single step of magic: The gathering,” presented at the ECAI: European Conference
on Artificial Intelligence, The Hague, Netherlands, 2016, vol. 285, pp. 1432–1439.'
ista: 'Chatterjee K, Ibsen-Jensen R. 2016. The complexity of deciding legality of
a single step of magic: The gathering. ECAI: European Conference on Artificial
Intelligence, Frontiers in Artificial Intelligence and Applications, vol. 285,
1432–1439.'
mla: 'Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. The Complexity of Deciding
Legality of a Single Step of Magic: The Gathering. Vol. 285, IOS Press, 2016,
pp. 1432–39, doi:10.3233/978-1-61499-672-9-1432.'
short: K. Chatterjee, R. Ibsen-Jensen, in:, IOS Press, 2016, pp. 1432–1439.
conference:
end_date: 2016-09-02
location: The Hague, Netherlands
name: 'ECAI: European Conference on Artificial Intelligence'
start_date: 2016-08-29
date_created: 2018-12-11T11:46:41Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2021-01-12T08:00:54Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.3233/978-1-61499-672-9-1432
file:
- access_level: open_access
checksum: 848043c812ace05e459579c923f3d3cf
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:07:59Z
date_updated: 2020-07-14T12:46:35Z
file_id: '4658'
file_name: IST-2018-950-v1+1_2016_Chatterjee_The_complexity.pdf
file_size: 2116225
relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: ' 285'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 1432 - 1439
publication_status: published
publisher: IOS Press
publist_id: '7342'
pubrep_id: '950'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'The complexity of deciding legality of a single step of magic: The gathering'
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 285
year: '2016'
...
---
_id: '479'
abstract:
- lang: eng
text: Clinical guidelines and decision support systems (DSS) play an important role
in daily practices of medicine. Many text-based guidelines have been encoded for
work-flow simulation of DSS to automate health care. During the collaboration
with Carle hospital to develop a DSS, we identify that, for some complex and life-critical
diseases, it is highly desirable to automatically rigorously verify some complex
temporal properties in guidelines, which brings new challenges to current simulation
based DSS with limited support of automatical formal verification and real-time
data analysis. In this paper, we conduct the first study on applying runtime verification
to cooperate with current DSS based on real-time data. Within the proposed technique,
a user-friendly domain specific language, named DRTV, is designed to specify vital
real-time data sampled by medical devices and temporal properties originated from
clinical guidelines. Some interfaces are developed for data acquisition and communication.
Then, for medical practice scenarios described in DRTV model, we will automatically
generate event sequences and runtime property verifier automata. If a temporal
property violates, real-time warnings will be produced by the formal verifier
and passed to medical DSS. We have used DRTV to specify different kinds of medical
care scenarios, and applied the proposed technique to assist existing DSS. As
presented in experiment results, in terms of warning detection, it outperforms
the only use of DSS or human inspection, and improves the quality of clinical
health care of hospital
acknowledgement: "This work is supported by NSF CNS 13-30077, NSF CNS 13-29886, NSF
CNS 15-45002, and NSFC 61303014.\r\nThe authors thank Dr. Bobby and Dr. Hill at
Carle Hospital, Urbana, IL for their help with the discussion on medical knowledge.\r\n\r\n"
alternative_title:
- Proceedings International Conference on Software Engineering
author:
- first_name: Yu
full_name: Jiang, Yu
last_name: Jiang
- first_name: Han
full_name: Liu, Han
last_name: Liu
- first_name: Hui
full_name: Kong, Hui
id: 3BDE25AA-F248-11E8-B48F-1D18A9856A87
last_name: Kong
orcid: 0000-0002-3066-6941
- first_name: Rui
full_name: Wang, Rui
last_name: Wang
- first_name: Mohamad
full_name: Hosseini, Mohamad
last_name: Hosseini
- first_name: Jiaguang
full_name: Sun, Jiaguang
last_name: Sun
- first_name: Lui
full_name: Sha, Lui
last_name: Sha
citation:
ama: 'Jiang Y, Liu H, Kong H, et al. Use runtime verification to improve the quality
of medical care practice. In: Proceedings of the 38th International Conference
on Software Engineering Companion . IEEE; 2016:112-121. doi:10.1145/2889160.2889233'
apa: 'Jiang, Y., Liu, H., Kong, H., Wang, R., Hosseini, M., Sun, J., & Sha,
L. (2016). Use runtime verification to improve the quality of medical care practice.
In Proceedings of the 38th International Conference on Software Engineering
Companion (pp. 112–121). Austin, TX, USA: IEEE. https://doi.org/10.1145/2889160.2889233'
chicago: Jiang, Yu, Han Liu, Hui Kong, Rui Wang, Mohamad Hosseini, Jiaguang Sun,
and Lui Sha. “Use Runtime Verification to Improve the Quality of Medical Care
Practice.” In Proceedings of the 38th International Conference on Software
Engineering Companion , 112–21. IEEE, 2016. https://doi.org/10.1145/2889160.2889233.
ieee: Y. Jiang et al., “Use runtime verification to improve the quality of
medical care practice,” in Proceedings of the 38th International Conference
on Software Engineering Companion , Austin, TX, USA, 2016, pp. 112–121.
ista: 'Jiang Y, Liu H, Kong H, Wang R, Hosseini M, Sun J, Sha L. 2016. Use runtime
verification to improve the quality of medical care practice. Proceedings of the
38th International Conference on Software Engineering Companion . ICSE: International
Conference on Software Engineering, Proceedings International Conference on Software
Engineering, , 112–121.'
mla: Jiang, Yu, et al. “Use Runtime Verification to Improve the Quality of Medical
Care Practice.” Proceedings of the 38th International Conference on Software
Engineering Companion , IEEE, 2016, pp. 112–21, doi:10.1145/2889160.2889233.
short: Y. Jiang, H. Liu, H. Kong, R. Wang, M. Hosseini, J. Sun, L. Sha, in:, Proceedings
of the 38th International Conference on Software Engineering Companion , IEEE,
2016, pp. 112–121.
conference:
end_date: 2016-05-22
location: Austin, TX, USA
name: 'ICSE: International Conference on Software Engineering'
start_date: 2016-05-14
date_created: 2018-12-11T11:46:42Z
date_published: 2016-05-14T00:00:00Z
date_updated: 2021-01-12T08:00:55Z
day: '14'
department:
- _id: ToHe
doi: 10.1145/2889160.2889233
language:
- iso: eng
month: '05'
oa_version: None
page: 112 - 121
publication: 'Proceedings of the 38th International Conference on Software Engineering
Companion '
publication_status: published
publisher: IEEE
publist_id: '7341'
quality_controlled: '1'
scopus_import: 1
status: public
title: Use runtime verification to improve the quality of medical care practice
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '480'
abstract:
- lang: eng
text: Graph games provide the foundation for modeling and synthesizing reactive
processes. In the synthesis of stochastic reactive processes, the traditional
model is perfect-information stochastic games, where some transitions of the game
graph are controlled by two adversarial players, and the other transitions are
executed probabilistically. We consider such games where the objective is the
conjunction of several quantitative objectives (specified as mean-payoff conditions),
which we refer to as generalized mean-payoff objectives. The basic decision problem
asks for the existence of a finite-memory strategy for a player that ensures the
generalized mean-payoff objective be satisfied with a desired probability against
all strategies of the opponent. A special case of the decision problem is the
almost-sure problem where the desired probability is 1. Previous results presented
a semi-decision procedure for -approximations of the almost-sure problem. In this
work, we show that both the almost-sure problem as well as the general basic decision
problem are coNP-complete, significantly improving the previous results. Moreover,
we show that in the case of 1-player stochastic games, randomized memoryless strategies
are sufficient and the problem can be solved in polynomial time. In contrast,
in two-player stochastic games, we show that even with randomized strategies exponential
memory is required in general, and present a matching exponential upper bound.
We also study the basic decision problem with infinite-memory strategies and present
computational complexity results for the problem. Our results are relevant in
the synthesis of stochastic reactive systems with multiple quantitative requirements.
alternative_title:
- Proceedings Symposium on Logic in Computer Science
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Laurent
full_name: Doyen, Laurent
last_name: Doyen
citation:
ama: 'Chatterjee K, Doyen L. Perfect-information stochastic games with generalized
mean-payoff objectives. In: Vol 05-08-July-2016. IEEE; 2016:247-256. doi:10.1145/2933575.2934513'
apa: 'Chatterjee, K., & Doyen, L. (2016). Perfect-information stochastic games
with generalized mean-payoff objectives (Vol. 05-08-July-2016, pp. 247–256). Presented
at the LICS: Logic in Computer Science, New York, NY, USA: IEEE. https://doi.org/10.1145/2933575.2934513'
chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Perfect-Information Stochastic
Games with Generalized Mean-Payoff Objectives,” 05-08-July-2016:247–56. IEEE,
2016. https://doi.org/10.1145/2933575.2934513.
ieee: 'K. Chatterjee and L. Doyen, “Perfect-information stochastic games with generalized
mean-payoff objectives,” presented at the LICS: Logic in Computer Science, New
York, NY, USA, 2016, vol. 05-08-July-2016, pp. 247–256.'
ista: 'Chatterjee K, Doyen L. 2016. Perfect-information stochastic games with generalized
mean-payoff objectives. LICS: Logic in Computer Science, Proceedings Symposium
on Logic in Computer Science, vol. 05-08-July-2016, 247–256.'
mla: Chatterjee, Krishnendu, and Laurent Doyen. Perfect-Information Stochastic
Games with Generalized Mean-Payoff Objectives. Vol. 05-08-July-2016, IEEE,
2016, pp. 247–56, doi:10.1145/2933575.2934513.
short: K. Chatterjee, L. Doyen, in:, IEEE, 2016, pp. 247–256.
conference:
end_date: 2016-07-08
location: New York, NY, USA
name: 'LICS: Logic in Computer Science'
start_date: 2016-07-05
date_created: 2018-12-11T11:46:42Z
date_published: 2016-07-05T00:00:00Z
date_updated: 2021-01-12T08:00:56Z
day: '05'
department:
- _id: KrCh
doi: 10.1145/2933575.2934513
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1604.06376
month: '07'
oa: 1
oa_version: Preprint
page: 247 - 256
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
grant_number: ICT15-003
name: Efficient Algorithms for Computer Aided Verification
publication_status: published
publisher: IEEE
publist_id: '7340'
quality_controlled: '1'
scopus_import: 1
status: public
title: Perfect-information stochastic games with generalized mean-payoff objectives
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 05-08-July-2016
year: '2016'
...
---
_id: '482'
abstract:
- lang: eng
text: Nonlinear electro-optical conversion of microwave radiation into the optical
telecommunication band is achieved within a crystalline whispering gallery mode
resonator, reaching 0.1% photon number conversion efficiency with MHz bandwidth.
alternative_title:
- Optics InfoBase Conference Papers
article_processing_charge: No
author:
- first_name: Alfredo
full_name: Rueda, Alfredo
last_name: Rueda
- first_name: Florian
full_name: Sedlmeir, Florian
last_name: Sedlmeir
- first_name: Michele
full_name: Collodo, Michele
last_name: Collodo
- first_name: Ulrich
full_name: Vogl, Ulrich
last_name: Vogl
- first_name: Birgit
full_name: Stiller, Birgit
last_name: Stiller
- first_name: Gerhard
full_name: Schunk, Gerhard
last_name: Schunk
- first_name: Dmitry
full_name: Strekalov, Dmitry
last_name: Strekalov
- first_name: Christoph
full_name: Marquardt, Christoph
last_name: Marquardt
- first_name: Johannes M
full_name: Fink, Johannes M
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
- first_name: Oskar
full_name: Painter, Oskar
last_name: Painter
- first_name: Gerd
full_name: Leuchs, Gerd
last_name: Leuchs
- first_name: Harald
full_name: Schwefel, Harald
last_name: Schwefel
citation:
ama: 'Rueda A, Sedlmeir F, Collodo M, et al. Nonlinear single sideband microwave
to optical conversion using an electro-optic WGM-resonator. In: Optica Publishing
Group; 2016. doi:10.1364/NP.2016.NTh3A.6'
apa: 'Rueda, A., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk, G., …
Schwefel, H. (2016). Nonlinear single sideband microwave to optical conversion
using an electro-optic WGM-resonator. Presented at the NP: Nonlinear Photonics,
Sydney, Australia: Optica Publishing Group. https://doi.org/10.1364/NP.2016.NTh3A.6'
chicago: Rueda, Alfredo, Florian Sedlmeir, Michele Collodo, Ulrich Vogl, Birgit
Stiller, Gerhard Schunk, Dmitry Strekalov, et al. “Nonlinear Single Sideband Microwave
to Optical Conversion Using an Electro-Optic WGM-Resonator.” Optica Publishing
Group, 2016. https://doi.org/10.1364/NP.2016.NTh3A.6.
ieee: 'A. Rueda et al., “Nonlinear single sideband microwave to optical conversion
using an electro-optic WGM-resonator,” presented at the NP: Nonlinear Photonics,
Sydney, Australia, 2016.'
ista: 'Rueda A, Sedlmeir F, Collodo M, Vogl U, Stiller B, Schunk G, Strekalov D,
Marquardt C, Fink JM, Painter O, Leuchs G, Schwefel H. 2016. Nonlinear single
sideband microwave to optical conversion using an electro-optic WGM-resonator.
NP: Nonlinear Photonics, Optics InfoBase Conference Papers, .'
mla: Rueda, Alfredo, et al. Nonlinear Single Sideband Microwave to Optical Conversion
Using an Electro-Optic WGM-Resonator. Optica Publishing Group, 2016, doi:10.1364/NP.2016.NTh3A.6.
short: A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov,
C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, Optica Publishing
Group, 2016.
conference:
end_date: 2016-09-08
location: Sydney, Australia
name: 'NP: Nonlinear Photonics'
start_date: 2016-09-05
date_created: 2018-12-11T11:46:43Z
date_published: 2016-08-29T00:00:00Z
date_updated: 2023-10-17T12:16:43Z
day: '29'
department:
- _id: JoFi
doi: 10.1364/NP.2016.NTh3A.6
language:
- iso: eng
month: '08'
oa_version: None
publication_status: published
publisher: Optica Publishing Group
publist_id: '7339'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nonlinear single sideband microwave to optical conversion using an electro-optic
WGM-resonator
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '510'
abstract:
- lang: eng
text: 'The CLE (CLAVATA3/Embryo Surrounding Region-related) peptides are small secreted
signaling peptides that are primarily involved in the regulation of stem cell
homeostasis in different plant meristems. Particularly, the characterization of
the CLE41-PXY/TDR signaling pathway has greatly advanced our understanding on
the potential roles of CLE peptides in vascular development and wood formation.
Nevertheless, our knowledge on this gene family in a tree species is limited.
In a recent study, we reported on a systematically investigation of the CLE gene
family in Populus trichocarpa . The potential roles of PtCLE genes were studied
by comparative analysis and transcriptional pro fi ling. Among fi fty PtCLE members,
many PtCLE proteins share identical CLE motifs or contain the same CLE motif as
that of AtCLEs, while PtCLE genes exhibited either comparable or distinct expression
patterns comparing to their Arabidopsis counterparts. These fi ndings indicate
the existence of both functional conservation and functional divergence between
PtCLEs and their AtCLE orthologues. Our results provide valuable resources for
future functional investigations of these critical signaling molecules in woody
plants. '
acknowledgement: 'We are grateful to Dr. Long (Laboratoire de Reproduction et Developpement
des Plantes,CNRS,INRA,ENSLyon,UCBL,Universite de Lyon,France)for critical reading
of the article. Work in our group is supported by the National Natural Science Foundation
of China (31271575; 31200902), the Fundamental Research Funds for the Central Univ
ersities (GK201103005), the Specialized Research Fund for the Doctoral Program of
Higher Education from the Ministry of Education of China (20120202120009), the Scientific
Research Foundation for the Returned Overseas Chinese Scholars, State Education
Ministry, and the Natural Science Basic Research Plan in Shaanxi Province of China
(2014JM3064). '
article_number: e1191734
article_processing_charge: No
author:
- first_name: Zhijun
full_name: Liu, Zhijun
last_name: Liu
- first_name: 'Nan'
full_name: Yang, Nan
last_name: Yang
- first_name: Yanting
full_name: Lv, Yanting
last_name: Lv
- first_name: Lixia
full_name: Pan, Lixia
last_name: Pan
- first_name: Shuo
full_name: Lv, Shuo
last_name: Lv
- first_name: Huibin
full_name: Han, Huibin
id: 31435098-F248-11E8-B48F-1D18A9856A87
last_name: Han
- first_name: Guodong
full_name: Wang, Guodong
last_name: Wang
citation:
ama: Liu Z, Yang N, Lv Y, et al. The CLE gene family in Populus trichocarpa. Plant
Signaling & Behavior. 2016;11(6). doi:10.1080/15592324.2016.1191734
apa: Liu, Z., Yang, N., Lv, Y., Pan, L., Lv, S., Han, H., & Wang, G. (2016).
The CLE gene family in Populus trichocarpa. Plant Signaling & Behavior.
Taylor & Francis. https://doi.org/10.1080/15592324.2016.1191734
chicago: Liu, Zhijun, Nan Yang, Yanting Lv, Lixia Pan, Shuo Lv, Huibin Han, and
Guodong Wang. “The CLE Gene Family in Populus Trichocarpa.” Plant Signaling
& Behavior. Taylor & Francis, 2016. https://doi.org/10.1080/15592324.2016.1191734.
ieee: Z. Liu et al., “The CLE gene family in Populus trichocarpa,” Plant
Signaling & Behavior, vol. 11, no. 6. Taylor & Francis, 2016.
ista: Liu Z, Yang N, Lv Y, Pan L, Lv S, Han H, Wang G. 2016. The CLE gene family
in Populus trichocarpa. Plant Signaling & Behavior. 11(6), e1191734.
mla: Liu, Zhijun, et al. “The CLE Gene Family in Populus Trichocarpa.” Plant
Signaling & Behavior, vol. 11, no. 6, e1191734, Taylor & Francis,
2016, doi:10.1080/15592324.2016.1191734.
short: Z. Liu, N. Yang, Y. Lv, L. Pan, S. Lv, H. Han, G. Wang, Plant Signaling &
Behavior 11 (2016).
date_created: 2018-12-11T11:46:53Z
date_published: 2016-06-02T00:00:00Z
date_updated: 2023-10-17T11:13:40Z
day: '02'
department:
- _id: JiFr
doi: 10.1080/15592324.2016.1191734
intvolume: ' 11'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4973754/
month: '06'
oa: 1
oa_version: Submitted Version
publication: Plant Signaling & Behavior
publication_status: published
publisher: Taylor & Francis
publist_id: '7308'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The CLE gene family in Populus trichocarpa
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2016'
...
---
_id: '526'
abstract:
- lang: eng
text: Plants form new organs with patterned tissue organization throughout their
lifespan. It is unknown whether this robust post-embryonic organ formation results
from stereotypic dynamic processes, in which the arrangement of cells follows
rigid rules. Here, we combine modeling with empirical observations of whole-organ
development to identify the principles governing lateral root formation in Arabidopsis.
Lateral roots derive from a small pool of founder cells in which some take a dominant
role as seen by lineage tracing. The first division of the founders is asymmetric,
tightly regulated, and determines the formation of a layered structure. Whereas
the pattern of subsequent cell divisions is not stereotypic between different
samples, it is characterized by a regular switch in division plane orientation.
This switch is also necessary for the appearance of patterned layers as a result
of the apical growth of the primordium. Our data suggest that lateral root morphogenesis
is based on a limited set of rules. They determine cell growth and division orientation.
The organ-level coupling of the cell behavior ensures the emergence of the lateral
root's characteristic features. We propose that self-organizing, non-deterministic
modes of development account for the robustness of plant organ morphogenesis.
acknowledgement: |
We thank M.J. Bennett, L. Laplaze, and S. Lemke for their helpful comments.
This work was supported by the Land Baden-Württemberg, the Chica und Heinz Schaller Stiftung, the CellNetworks cluster of excellence, and the Boehringer Ingelheim Fond (to J.F. and A.M.) and the Cluster of Excellence “Macromolecular Complexes” at the Goethe University Frankfurt am Main (CEF-MC II; DFG Project EXC 115; to D.v.W., A.S., and E.H.K.S.).
author:
- first_name: Daniel
full_name: Daniel von Wangenheim
id: 49E91952-F248-11E8-B48F-1D18A9856A87
last_name: Von Wangenheim
orcid: 0000-0002-6862-1247
- first_name: Jens
full_name: Fangerau, Jens
last_name: Fangerau
- first_name: Alexander
full_name: Schmitz, Alexander
last_name: Schmitz
- first_name: Richard
full_name: Smith, Richard S
last_name: Smith
- first_name: Heike
full_name: Leitte, Heike
last_name: Leitte
- first_name: Ernst
full_name: Stelzer, Ernst H
last_name: Stelzer
- first_name: Alexis
full_name: Maizel, Alexis
last_name: Maizel
citation:
ama: von Wangenheim D, Fangerau J, Schmitz A, et al. Rules and self-organizing properties
of post-embryonic plant organ cell division patterns. Current Biology.
2016;26(4):439-449. doi:10.1016/j.cub.2015.12.047
apa: von Wangenheim, D., Fangerau, J., Schmitz, A., Smith, R., Leitte, H., Stelzer,
E., & Maizel, A. (2016). Rules and self-organizing properties of post-embryonic
plant organ cell division patterns. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2015.12.047
chicago: Wangenheim, Daniel von, Jens Fangerau, Alexander Schmitz, Richard Smith,
Heike Leitte, Ernst Stelzer, and Alexis Maizel. “Rules and Self-Organizing Properties
of Post-Embryonic Plant Organ Cell Division Patterns.” Current Biology.
Cell Press, 2016. https://doi.org/10.1016/j.cub.2015.12.047.
ieee: D. von Wangenheim et al., “Rules and self-organizing properties of
post-embryonic plant organ cell division patterns,” Current Biology, vol.
26, no. 4. Cell Press, pp. 439–449, 2016.
ista: von Wangenheim D, Fangerau J, Schmitz A, Smith R, Leitte H, Stelzer E, Maizel
A. 2016. Rules and self-organizing properties of post-embryonic plant organ cell
division patterns. Current Biology. 26(4), 439–449.
mla: von Wangenheim, Daniel, et al. “Rules and Self-Organizing Properties of Post-Embryonic
Plant Organ Cell Division Patterns.” Current Biology, vol. 26, no. 4, Cell
Press, 2016, pp. 439–49, doi:10.1016/j.cub.2015.12.047.
short: D. von Wangenheim, J. Fangerau, A. Schmitz, R. Smith, H. Leitte, E. Stelzer,
A. Maizel, Current Biology 26 (2016) 439–449.
date_created: 2018-12-11T11:46:58Z
date_published: 2016-02-22T00:00:00Z
date_updated: 2021-01-12T08:01:24Z
day: '22'
doi: 10.1016/j.cub.2015.12.047
extern: 1
intvolume: ' 26'
issue: '4'
month: '02'
page: 439 - 449
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '7293'
quality_controlled: 0
status: public
title: Rules and self-organizing properties of post-embryonic plant organ cell division
patterns
type: journal_article
volume: 26
year: '2016'
...
---
_id: '1241'
abstract:
- lang: eng
text: 'How likely is it that a population escapes extinction through adaptive evolution?
The answer to this question is of great relevance in conservation biology, where
we aim at species’ rescue and the maintenance of biodiversity, and in agriculture
and medicine, where we seek to hamper the emergence of pesticide or drug resistance.
By reshuffling the genome, recombination has two antagonistic effects on the probability
of evolutionary rescue: It generates and it breaks up favorable gene combinations.
Which of the two effects prevails depends on the fitness effects of mutations
and on the impact of stochasticity on the allele frequencies. In this article,
we analyze a mathematical model for rescue after a sudden environmental change
when adaptation is contingent on mutations at two loci. The analysis reveals a
complex nonlinear dependence of population survival on recombination. We moreover
find that, counterintuitively, a fast eradication of the wild type can promote
rescue in the presence of recombination. The model also shows that two-step rescue
is not unlikely to happen and can even be more likely than single-step rescue
(where adaptation relies on a single mutation), depending on the circumstances.'
acknowledgement: This work was made possible by a “For Women in Science” fellowship
(L’Oréal Österreich in cooperation with the Austrian Commission for the United Nations
Educational, Scientific, and Cultural Organization and the Austrian Academy of Sciences
with financial support from the Federal Ministry for Science and Research Austria)
and European Research Council grant 250152 (to Nick Barton).
article_processing_charge: No
author:
- first_name: Hildegard
full_name: Uecker, Hildegard
id: 2DB8F68A-F248-11E8-B48F-1D18A9856A87
last_name: Uecker
orcid: 0000-0001-9435-2813
- first_name: Joachim
full_name: Hermisson, Joachim
last_name: Hermisson
citation:
ama: Uecker H, Hermisson J. The role of recombination in evolutionary rescue. Genetics.
2016;202(2):721-732. doi:10.1534/genetics.115.180299
apa: Uecker, H., & Hermisson, J. (2016). The role of recombination in evolutionary
rescue. Genetics. Genetics Society of America. https://doi.org/10.1534/genetics.115.180299
chicago: Uecker, Hildegard, and Joachim Hermisson. “The Role of Recombination in
Evolutionary Rescue.” Genetics. Genetics Society of America, 2016. https://doi.org/10.1534/genetics.115.180299.
ieee: H. Uecker and J. Hermisson, “The role of recombination in evolutionary rescue,”
Genetics, vol. 202, no. 2. Genetics Society of America, pp. 721–732, 2016.
ista: Uecker H, Hermisson J. 2016. The role of recombination in evolutionary rescue.
Genetics. 202(2), 721–732.
mla: Uecker, Hildegard, and Joachim Hermisson. “The Role of Recombination in Evolutionary
Rescue.” Genetics, vol. 202, no. 2, Genetics Society of America, 2016,
pp. 721–32, doi:10.1534/genetics.115.180299.
short: H. Uecker, J. Hermisson, Genetics 202 (2016) 721–732.
das_tickbox: '1'
date_created: 2018-12-11T11:50:54Z
date_published: 2016-02-01T00:00:00Z
date_updated: 2026-06-18T07:59:00Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1534/genetics.115.180299
ec_funded: 1
intvolume: ' 202'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://biorxiv.org/content/early/2015/07/06/022020.abstract
month: '02'
oa: 1
oa_version: Preprint
page: 721 - 732
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '250152'
name: Limits to selection in biology and in evolutionary computation
- _id: 25B67606-B435-11E9-9278-68D0E5697425
name: L'OREAL Fellowship
publication: Genetics
publication_status: published
publisher: Genetics Society of America
publist_id: '6091'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of recombination in evolutionary rescue
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 202
year: '2016'
...
---
_id: '12196'
abstract:
- lang: eng
text: SNC1 (SUPPRESSOR OF NPR1, CONSTITUTIVE 1) is one of a suite of intracellular
Arabidopsis NOD-like receptor (NLR) proteins which, upon activation, result in
the induction of defense responses. However, the molecular mechanisms underlying
NLR activation and the subsequent provocation of immune responses are only partially
characterized. To identify negative regulators of NLR-mediated immunity, a forward
genetic screen was undertaken to search for enhancers of the dwarf, autoimmune
gain-of-function snc1 mutant. To avoid lethality resulting from severe dwarfism,
the screen was conducted using mos4 (modifier of snc1, 4) snc1 plants, which display
wild-type-like morphology and resistance. M2 progeny were screened for mutant,
snc1-enhancing (muse) mutants displaying a reversion to snc1-like phenotypes.
The muse9 mos4 snc1 triple mutant was found to exhibit dwarf morphology, elevated
expression of the pPR2-GUS defense marker reporter gene and enhanced resistance
to the oomycete pathogen Hyaloperonospora arabidopsidis Noco2. Via map-based cloning
and Illumina sequencing, it was determined that the muse9 mutation is in the gene
encoding the SWI/SNF chromatin remodeler SYD (SPLAYED), and was thus renamed syd-10.
The syd-10 single mutant has no observable alteration from wild-type-like resistance,
although the syd-4 T-DNA insertion allele displays enhanced resistance to the
bacterial pathogen Pseudomonas syringae pv. maculicola ES4326. Transcription of
SNC1 is increased in both syd-4 and syd-10. These data suggest that SYD plays
a subtle, specific role in the regulation of SNC1 expression and SNC1-mediated
immunity. SYD may work with other proteins at the chromatin level to repress SNC1
transcription; such regulation is important for fine-tuning the expression of
NLR-encoding genes to prevent unpropitious autoimmunity.
acknowledgement: "This work was supported by the National Sciences and Engineering
Research Council of Canada [Canada Graduate\r\nScholarship–Doctoral to K.J.; Discovery
Grant to X.L.]; the department of Botany at the University of f British Columbia\r\n[the
Dewar Cooper Memorial Fund to X.L.].The authors would like to thank Dr. Yuelin Zhang
and Ms. Yan Li for their assistance with next-generation sequencing, and Mr. Charles
Copeland for critical reading of the manuscript."
article_processing_charge: No
article_type: original
author:
- first_name: Kaeli C.M.
full_name: Johnson, Kaeli C.M.
last_name: Johnson
- first_name: Shitou
full_name: Xia, Shitou
last_name: Xia
- first_name: Xiaoqi
full_name: Feng, Xiaoqi
id: e0164712-22ee-11ed-b12a-d80fcdf35958
last_name: Feng
orcid: 0000-0002-4008-1234
- first_name: Xin
full_name: Li, Xin
last_name: Li
citation:
ama: Johnson KCM, Xia S, Feng X, Li X. The chromatin remodeler SPLAYED negatively
regulates SNC1-mediated immunity. Plant and Cell Physiology. 2015;56(8):1616-1623.
doi:10.1093/pcp/pcv087
apa: Johnson, K. C. M., Xia, S., Feng, X., & Li, X. (2015). The chromatin remodeler
SPLAYED negatively regulates SNC1-mediated immunity. Plant and Cell Physiology.
Oxford University Press. https://doi.org/10.1093/pcp/pcv087
chicago: Johnson, Kaeli C.M., Shitou Xia, Xiaoqi Feng, and Xin Li. “The Chromatin
Remodeler SPLAYED Negatively Regulates SNC1-Mediated Immunity.” Plant and Cell
Physiology. Oxford University Press, 2015. https://doi.org/10.1093/pcp/pcv087.
ieee: K. C. M. Johnson, S. Xia, X. Feng, and X. Li, “The chromatin remodeler SPLAYED
negatively regulates SNC1-mediated immunity,” Plant and Cell Physiology,
vol. 56, no. 8. Oxford University Press, pp. 1616–1623, 2015.
ista: Johnson KCM, Xia S, Feng X, Li X. 2015. The chromatin remodeler SPLAYED negatively
regulates SNC1-mediated immunity. Plant and Cell Physiology. 56(8), 1616–1623.
mla: Johnson, Kaeli C. M., et al. “The Chromatin Remodeler SPLAYED Negatively Regulates
SNC1-Mediated Immunity.” Plant and Cell Physiology, vol. 56, no. 8, Oxford
University Press, 2015, pp. 1616–23, doi:10.1093/pcp/pcv087.
short: K.C.M. Johnson, S. Xia, X. Feng, X. Li, Plant and Cell Physiology 56 (2015)
1616–1623.
date_created: 2023-01-16T09:20:22Z
date_published: 2015-08-01T00:00:00Z
date_updated: 2023-05-08T11:03:23Z
department:
- _id: XiFe
doi: 10.1093/pcp/pcv087
extern: '1'
external_id:
pmid:
- '26063389'
intvolume: ' 56'
issue: '8'
keyword:
- Cell Biology
- Plant Science
- Physiology
- General Medicine
language:
- iso: eng
month: '08'
oa_version: None
page: 1616-1623
pmid: 1
publication: Plant and Cell Physiology
publication_identifier:
issn:
- 0032-0781
- 1471-9053
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 56
year: '2015'
...
---
_id: '12626'
abstract:
- lang: eng
text: Ice cliffs have been identified as a reason for higher ablation rates on debris-covered
glaciers than are implied by the insulation effects of the debris. This study
aims to improve our understanding of cliff backwasting, and the role of radiative
fluxes in particular. An energy-balance model is forced with new data gathered
in May and October 2013 on Lirung Glacier, Nepalese Himalaya. Observations show
substantial variability in melt between cliffs, between locations on any cliff
and between seasons. Using a high-resolution digital elevation model we calculate
longwave fluxes incident to the cliff from surrounding terrain and include the
effect of local shading on shortwave radiation. This is an advance over previous
studies, that made simplified assumptions on cliff geometry and radiative fluxes.
Measured melt rates varied between 3.25 and 8.6 cm d−1 in May and 0.18 and 1.34
cm d−1 in October. Model results reproduce the strong variability in space and
time, suggesting considerable differences in radiative fluxes over one cliff.
In October the model fails to reproduce stake readings, probably due to the lack
of a refreezing component. Disregarding local topography can lead to overestimation
of melt at the point scale by up to ∼9%.
article_processing_charge: No
article_type: original
author:
- first_name: Jakob F.
full_name: Steiner, Jakob F.
last_name: Steiner
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
- first_name: Pascal
full_name: Buri, Pascal
last_name: Buri
- first_name: Evan S.
full_name: Miles, Evan S.
last_name: Miles
- first_name: Walter W.
full_name: Immerzeel, Walter W.
last_name: Immerzeel
- first_name: Tim D.
full_name: Reid, Tim D.
last_name: Reid
citation:
ama: Steiner JF, Pellicciotti F, Buri P, Miles ES, Immerzeel WW, Reid TD. Modelling
ice-cliff backwasting on a debris-covered glacier in the Nepalese Himalaya. Journal
of Glaciology. 2015;61(229):889-907. doi:10.3189/2015jog14j194
apa: Steiner, J. F., Pellicciotti, F., Buri, P., Miles, E. S., Immerzeel, W. W.,
& Reid, T. D. (2015). Modelling ice-cliff backwasting on a debris-covered
glacier in the Nepalese Himalaya. Journal of Glaciology. International
Glaciological Society. https://doi.org/10.3189/2015jog14j194
chicago: Steiner, Jakob F., Francesca Pellicciotti, Pascal Buri, Evan S. Miles,
Walter W. Immerzeel, and Tim D. Reid. “Modelling Ice-Cliff Backwasting on a Debris-Covered
Glacier in the Nepalese Himalaya.” Journal of Glaciology. International
Glaciological Society, 2015. https://doi.org/10.3189/2015jog14j194.
ieee: J. F. Steiner, F. Pellicciotti, P. Buri, E. S. Miles, W. W. Immerzeel, and
T. D. Reid, “Modelling ice-cliff backwasting on a debris-covered glacier in the
Nepalese Himalaya,” Journal of Glaciology, vol. 61, no. 229. International
Glaciological Society, pp. 889–907, 2015.
ista: Steiner JF, Pellicciotti F, Buri P, Miles ES, Immerzeel WW, Reid TD. 2015.
Modelling ice-cliff backwasting on a debris-covered glacier in the Nepalese Himalaya.
Journal of Glaciology. 61(229), 889–907.
mla: Steiner, Jakob F., et al. “Modelling Ice-Cliff Backwasting on a Debris-Covered
Glacier in the Nepalese Himalaya.” Journal of Glaciology, vol. 61, no.
229, International Glaciological Society, 2015, pp. 889–907, doi:10.3189/2015jog14j194.
short: J.F. Steiner, F. Pellicciotti, P. Buri, E.S. Miles, W.W. Immerzeel, T.D.
Reid, Journal of Glaciology 61 (2015) 889–907.
date_created: 2023-02-20T08:16:01Z
date_published: 2015-07-01T00:00:00Z
date_updated: 2023-02-24T09:43:14Z
day: '01'
doi: 10.3189/2015jog14j194
extern: '1'
intvolume: ' 61'
issue: '229'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.3189/2015JoG14J194
month: '07'
oa: 1
oa_version: Published Version
page: 889-907
publication: Journal of Glaciology
publication_identifier:
eissn:
- 1727-5652
issn:
- 0022-1430
publication_status: published
publisher: International Glaciological Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modelling ice-cliff backwasting on a debris-covered glacier in the Nepalese
Himalaya
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2015'
...
---
_id: '12627'
abstract:
- lang: eng
text: Spatial evolution of supraglacial debris cover on mountain glaciers is a largely
unmonitored and poorly understood phenomenon that directly affects glacier melt.
Supraglacial debris cover for 93 glaciers in the Karakoram, northern Pakistan,
was mapped from Landsat imagery acquired in 1977, 1998, 2009 and 2014. Surge-type
glaciers occupy 41% of the study area and were considered separately. The time
series of debris-covered surface area change shows a mean value of zero or near-zero
change for both surging and non-surging glaciers. An increase in debris-covered
area is often associated with negative regional mass balances. We extend this
logic to suggest that the stable regional mass balances in the Karakoram explain
the zero or near-zero change in debris-covered area. This coupling of trends combined
with our 37 year time series of data suggests the Karakoram anomaly extends further
back in time than previously known.
article_processing_charge: No
article_type: original
author:
- first_name: Sam
full_name: Herreid, Sam
last_name: Herreid
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
- first_name: Alvaro
full_name: Ayala, Alvaro
last_name: Ayala
- first_name: Anna
full_name: Chesnokova, Anna
last_name: Chesnokova
- first_name: Christian
full_name: Kienholz, Christian
last_name: Kienholz
- first_name: Joseph
full_name: Shea, Joseph
last_name: Shea
- first_name: Arun
full_name: Shrestha, Arun
last_name: Shrestha
citation:
ama: Herreid S, Pellicciotti F, Ayala A, et al. Satellite observations show no net
change in the percentage of supraglacial debris-covered area in northern Pakistan
from 1977 to 2014. Journal of Glaciology. 2015;61(227):524-536. doi:10.3189/2015jog14j227
apa: Herreid, S., Pellicciotti, F., Ayala, A., Chesnokova, A., Kienholz, C., Shea,
J., & Shrestha, A. (2015). Satellite observations show no net change in the
percentage of supraglacial debris-covered area in northern Pakistan from 1977
to 2014. Journal of Glaciology. International Glaciological Society. https://doi.org/10.3189/2015jog14j227
chicago: Herreid, Sam, Francesca Pellicciotti, Alvaro Ayala, Anna Chesnokova, Christian
Kienholz, Joseph Shea, and Arun Shrestha. “Satellite Observations Show No Net
Change in the Percentage of Supraglacial Debris-Covered Area in Northern Pakistan
from 1977 to 2014.” Journal of Glaciology. International Glaciological
Society, 2015. https://doi.org/10.3189/2015jog14j227.
ieee: S. Herreid et al., “Satellite observations show no net change in the
percentage of supraglacial debris-covered area in northern Pakistan from 1977
to 2014,” Journal of Glaciology, vol. 61, no. 227. International Glaciological
Society, pp. 524–536, 2015.
ista: Herreid S, Pellicciotti F, Ayala A, Chesnokova A, Kienholz C, Shea J, Shrestha
A. 2015. Satellite observations show no net change in the percentage of supraglacial
debris-covered area in northern Pakistan from 1977 to 2014. Journal of Glaciology.
61(227), 524–536.
mla: Herreid, Sam, et al. “Satellite Observations Show No Net Change in the Percentage
of Supraglacial Debris-Covered Area in Northern Pakistan from 1977 to 2014.” Journal
of Glaciology, vol. 61, no. 227, International Glaciological Society, 2015,
pp. 524–36, doi:10.3189/2015jog14j227.
short: S. Herreid, F. Pellicciotti, A. Ayala, A. Chesnokova, C. Kienholz, J. Shea,
A. Shrestha, Journal of Glaciology 61 (2015) 524–536.
date_created: 2023-02-20T08:16:06Z
date_published: 2015-05-01T00:00:00Z
date_updated: 2023-02-24T09:40:30Z
day: '01'
doi: 10.3189/2015jog14j227
extern: '1'
intvolume: ' 61'
issue: '227'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.3189/2015JoG14J227
month: '05'
oa: 1
oa_version: Published Version
page: 524-536
publication: Journal of Glaciology
publication_identifier:
eissn:
- 1727-5652
issn:
- 0022-1430
publication_status: published
publisher: International Glaciological Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Satellite observations show no net change in the percentage of supraglacial
debris-covered area in northern Pakistan from 1977 to 2014
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2015'
...
---
_id: '12628'
abstract:
- lang: eng
text: Thick debris cover on glaciers can significantly reduce ice melt. However,
several studies have suggested that debris-covered glaciers in the Himalaya might
have lost mass at a rate similar to debris-free glaciers. We reconstruct elevation
and mass changes for the debris-covered glaciers of the upper Langtang valley,
Nepalese Himalaya, using a digital elevation model (DEM) from 1974 stereo Hexagon
satellite data and the 2000 SRTM (Shuttle Radar Topography Mission) DEM. Uncertainties
are high in the accumulation areas, due to data gaps in the SRTM and difficulties
with delineation of the glacier borders. Even with these uncertainties, we obtain
thinning rates comparable to those of several other studies in the Himalaya. In
particular, we obtain a total mass balance for the investigated debris-covered
glaciers of the basin of –0.32 ± 0.18 m w.e. a−1. However,
there are major spatial differences both between glaciers and within any single
glacier, exhibiting a very distinct nonlinear mass-balance profile with elevation.
Through analysis of surface velocities derived from Landsat ETM+ imagery, we show
that thinning occurs in areas of low velocity and low slope. These areas are prone
to a general, dynamic decay of surface features and to the development of supraglacial
lakes and ice cliffs, which may be responsible for a considerable increase in
overall glacier ablation.
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
- first_name: Christa
full_name: Stephan, Christa
last_name: Stephan
- first_name: Evan
full_name: Miles, Evan
last_name: Miles
- first_name: Sam
full_name: Herreid, Sam
last_name: Herreid
- first_name: Walter W.
full_name: Immerzeel, Walter W.
last_name: Immerzeel
- first_name: Tobias
full_name: Bolch, Tobias
last_name: Bolch
citation:
ama: Pellicciotti F, Stephan C, Miles E, Herreid S, Immerzeel WW, Bolch T. Mass-balance
changes of the debris-covered glaciers in the Langtang Himal, Nepal, from 1974
to 1999. Journal of Glaciology. 2015;61(226):373-386. doi:10.3189/2015jog13j237
apa: Pellicciotti, F., Stephan, C., Miles, E., Herreid, S., Immerzeel, W. W., &
Bolch, T. (2015). Mass-balance changes of the debris-covered glaciers in the Langtang
Himal, Nepal, from 1974 to 1999. Journal of Glaciology. International Glaciological
Society. https://doi.org/10.3189/2015jog13j237
chicago: Pellicciotti, Francesca, Christa Stephan, Evan Miles, Sam Herreid, Walter
W. Immerzeel, and Tobias Bolch. “Mass-Balance Changes of the Debris-Covered Glaciers
in the Langtang Himal, Nepal, from 1974 to 1999.” Journal of Glaciology.
International Glaciological Society, 2015. https://doi.org/10.3189/2015jog13j237.
ieee: F. Pellicciotti, C. Stephan, E. Miles, S. Herreid, W. W. Immerzeel, and T.
Bolch, “Mass-balance changes of the debris-covered glaciers in the Langtang Himal,
Nepal, from 1974 to 1999,” Journal of Glaciology, vol. 61, no. 226. International
Glaciological Society, pp. 373–386, 2015.
ista: Pellicciotti F, Stephan C, Miles E, Herreid S, Immerzeel WW, Bolch T. 2015.
Mass-balance changes of the debris-covered glaciers in the Langtang Himal, Nepal,
from 1974 to 1999. Journal of Glaciology. 61(226), 373–386.
mla: Pellicciotti, Francesca, et al. “Mass-Balance Changes of the Debris-Covered
Glaciers in the Langtang Himal, Nepal, from 1974 to 1999.” Journal of Glaciology,
vol. 61, no. 226, International Glaciological Society, 2015, pp. 373–86, doi:10.3189/2015jog13j237.
short: F. Pellicciotti, C. Stephan, E. Miles, S. Herreid, W.W. Immerzeel, T. Bolch,
Journal of Glaciology 61 (2015) 373–386.
date_created: 2023-02-20T08:16:11Z
date_published: 2015-03-01T00:00:00Z
date_updated: 2023-02-24T09:35:21Z
day: '01'
doi: 10.3189/2015jog13j237
extern: '1'
intvolume: ' 61'
issue: '226'
keyword:
- Earth-Surface Processes
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.3189/2015JoG13J237
month: '03'
oa: 1
oa_version: Published Version
page: 373-386
publication: Journal of Glaciology
publication_identifier:
eissn:
- 1727-5652
issn:
- 0022-1430
publication_status: published
publisher: International Glaciological Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mass-balance changes of the debris-covered glaciers in the Langtang Himal,
Nepal, from 1974 to 1999
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2015'
...
---
_id: '12629'
abstract:
- lang: eng
text: Meteorological studies in high-mountain environments form the basis of our
understanding of catchment hydrology and glacier accumulation and melt processes,
yet high-altitude (>4000 m above sea level, asl) observatories are rare. This
research presents meteorological data recorded between December 2012 and November
2013 at seven stations in Nepal, ranging in elevation from 3860 to 5360 m asl.
Seasonal and diurnal cycles in air temperature, vapour pressure, incoming short-wave
and long-wave radiation, atmospheric transmissivity, wind speed, and precipitation
are compared between sites. Solar radiation strongly affects diurnal temperature
and vapour pressure cycles, but local topography and valley-scale circulations
alter wind speed and precipitation cycles. The observed diurnal variability in
vertical temperature gradients in all seasons highlights the importance of in
situ measurements for melt modelling. The monsoon signal (progressive onset and
sharp end) is visible in all data-sets, and the passage of the remnants of Typhoon
Phailin in mid-October 2013 provides an interesting case study on the possible
effects of such storms on glaciers in the region.
article_processing_charge: No
article_type: original
author:
- first_name: J.M.
full_name: Shea, J.M.
last_name: Shea
- first_name: P.
full_name: Wagnon, P.
last_name: Wagnon
- first_name: W.W.
full_name: Immerzeel, W.W.
last_name: Immerzeel
- first_name: R.
full_name: Biron, R.
last_name: Biron
- first_name: F.
full_name: Brun, F.
last_name: Brun
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
citation:
ama: Shea JM, Wagnon P, Immerzeel WW, Biron R, Brun F, Pellicciotti F. A comparative
high-altitude meteorological analysis from three catchments in the Nepalese Himalaya.
International Journal of Water Resources Development. 2015;31(2):174-200.
doi:10.1080/07900627.2015.1020417
apa: Shea, J. M., Wagnon, P., Immerzeel, W. W., Biron, R., Brun, F., & Pellicciotti,
F. (2015). A comparative high-altitude meteorological analysis from three catchments
in the Nepalese Himalaya. International Journal of Water Resources Development.
Taylor & Francis. https://doi.org/10.1080/07900627.2015.1020417
chicago: Shea, J.M., P. Wagnon, W.W. Immerzeel, R. Biron, F. Brun, and Francesca
Pellicciotti. “A Comparative High-Altitude Meteorological Analysis from Three
Catchments in the Nepalese Himalaya.” International Journal of Water Resources
Development. Taylor & Francis, 2015. https://doi.org/10.1080/07900627.2015.1020417.
ieee: J. M. Shea, P. Wagnon, W. W. Immerzeel, R. Biron, F. Brun, and F. Pellicciotti,
“A comparative high-altitude meteorological analysis from three catchments in
the Nepalese Himalaya,” International Journal of Water Resources Development,
vol. 31, no. 2. Taylor & Francis, pp. 174–200, 2015.
ista: Shea JM, Wagnon P, Immerzeel WW, Biron R, Brun F, Pellicciotti F. 2015. A
comparative high-altitude meteorological analysis from three catchments in the
Nepalese Himalaya. International Journal of Water Resources Development. 31(2),
174–200.
mla: Shea, J. M., et al. “A Comparative High-Altitude Meteorological Analysis from
Three Catchments in the Nepalese Himalaya.” International Journal of Water
Resources Development, vol. 31, no. 2, Taylor & Francis, 2015, pp. 174–200,
doi:10.1080/07900627.2015.1020417.
short: J.M. Shea, P. Wagnon, W.W. Immerzeel, R. Biron, F. Brun, F. Pellicciotti,
International Journal of Water Resources Development 31 (2015) 174–200.
date_created: 2023-02-20T08:16:17Z
date_published: 2015-04-18T00:00:00Z
date_updated: 2023-02-24T09:30:42Z
day: '18'
doi: 10.1080/07900627.2015.1020417
extern: '1'
intvolume: ' 31'
issue: '2'
keyword:
- Water Science and Technology
- Development
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1080/07900627.2015.1020417
month: '04'
oa: 1
oa_version: Published Version
page: 174-200
publication: International Journal of Water Resources Development
publication_identifier:
eissn:
- 1360-0648
issn:
- 0790-0627
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: A comparative high-altitude meteorological analysis from three catchments in
the Nepalese Himalaya
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2015'
...
---
_id: '12630'
abstract:
- lang: eng
text: "The hydrology of high-elevation watersheds of the Hindu Kush-Himalaya region
(HKH) is poorly known. The correct representation of internal states and process
dynamics in glacio-hydrological models can often not be verified due to missing
in situ measurements. We use a new set of detailed ground data from the upper
Langtang valley in Nepal to systematically guide a state-of-the art glacio-hydrological
model through a parameter assigning process with the aim to understand the hydrology
of the catchment and contribution of snow and ice processes to runoff. 14 parameters
are directly calculated on the basis of local data, and 13 parameters are calibrated
against 5 different datasets of in situ or remote sensing data. Spatial fields
of debris thickness are reconstructed through a novel approach that employs data
from an Unmanned Aerial Vehicle (UAV), energy balance modeling and statistical
techniques. The model is validated against measured catchment runoff (Nash–Sutcliffe
efficiency 0.87) and modeled snow cover is compared to Landsat snow cover. The
advanced representation of processes allowed assessing the role played by avalanching
for runoff for the first time for a Himalayan catchment (5% of annual water inputs
to the hydrological system are due to snow redistribution) and to quantify the
hydrological significance of sub-debris ice melt (9% of annual water inputs).
Snowmelt is the most important contributor to total runoff during the hydrological
year 2012/2013 (representing 40% of all sources), followed by rainfall (34%) and
ice melt (26%). A sensitivity analysis is used to assess the efficiency of the
monitoring network and identify the timing and location of field measurements
that constrain model uncertainty. The methodology to set up a glacio-hydrological
model in high-elevation regions presented in this study can be regarded as a benchmark
for modelers in the HKH seeking to evaluate their calibration approach, their
experimental setup and thus to reduce the predictive model uncertainty.\r\n\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: S.
full_name: Ragettli, S.
last_name: Ragettli
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
- first_name: W.W.
full_name: Immerzeel, W.W.
last_name: Immerzeel
- first_name: E.S.
full_name: Miles, E.S.
last_name: Miles
- first_name: L.
full_name: Petersen, L.
last_name: Petersen
- first_name: M.
full_name: Heynen, M.
last_name: Heynen
- first_name: J.M.
full_name: Shea, J.M.
last_name: Shea
- first_name: D.
full_name: Stumm, D.
last_name: Stumm
- first_name: S.
full_name: Joshi, S.
last_name: Joshi
- first_name: A.
full_name: Shrestha, A.
last_name: Shrestha
citation:
ama: Ragettli S, Pellicciotti F, Immerzeel WW, et al. Unraveling the hydrology of
a Himalayan catchment through integration of high resolution in situ data and
remote sensing with an advanced simulation model. Advances in Water Resources.
2015;78(4):94-111. doi:10.1016/j.advwatres.2015.01.013
apa: Ragettli, S., Pellicciotti, F., Immerzeel, W. W., Miles, E. S., Petersen, L.,
Heynen, M., … Shrestha, A. (2015). Unraveling the hydrology of a Himalayan catchment
through integration of high resolution in situ data and remote sensing with an
advanced simulation model. Advances in Water Resources. Elsevier. https://doi.org/10.1016/j.advwatres.2015.01.013
chicago: Ragettli, S., Francesca Pellicciotti, W.W. Immerzeel, E.S. Miles, L. Petersen,
M. Heynen, J.M. Shea, D. Stumm, S. Joshi, and A. Shrestha. “Unraveling the Hydrology
of a Himalayan Catchment through Integration of High Resolution in Situ Data and
Remote Sensing with an Advanced Simulation Model.” Advances in Water Resources.
Elsevier, 2015. https://doi.org/10.1016/j.advwatres.2015.01.013.
ieee: S. Ragettli et al., “Unraveling the hydrology of a Himalayan catchment
through integration of high resolution in situ data and remote sensing with an
advanced simulation model,” Advances in Water Resources, vol. 78, no. 4.
Elsevier, pp. 94–111, 2015.
ista: Ragettli S, Pellicciotti F, Immerzeel WW, Miles ES, Petersen L, Heynen M,
Shea JM, Stumm D, Joshi S, Shrestha A. 2015. Unraveling the hydrology of a Himalayan
catchment through integration of high resolution in situ data and remote sensing
with an advanced simulation model. Advances in Water Resources. 78(4), 94–111.
mla: Ragettli, S., et al. “Unraveling the Hydrology of a Himalayan Catchment through
Integration of High Resolution in Situ Data and Remote Sensing with an Advanced
Simulation Model.” Advances in Water Resources, vol. 78, no. 4, Elsevier,
2015, pp. 94–111, doi:10.1016/j.advwatres.2015.01.013.
short: S. Ragettli, F. Pellicciotti, W.W. Immerzeel, E.S. Miles, L. Petersen, M.
Heynen, J.M. Shea, D. Stumm, S. Joshi, A. Shrestha, Advances in Water Resources
78 (2015) 94–111.
date_created: 2023-02-20T08:16:21Z
date_published: 2015-04-01T00:00:00Z
date_updated: 2023-02-24T09:28:04Z
day: '01'
doi: 10.1016/j.advwatres.2015.01.013
extern: '1'
intvolume: ' 78'
issue: '4'
keyword:
- Water Science and Technology
language:
- iso: eng
month: '04'
oa_version: None
page: 94-111
publication: Advances in Water Resources
publication_identifier:
issn:
- 0309-1708
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unraveling the hydrology of a Himalayan catchment through integration of high
resolution in situ data and remote sensing with an advanced simulation model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 78
year: '2015'
...
---
_id: '12631'
abstract:
- lang: eng
text: Air temperature is one of the most relevant input variables for snow and ice
melt calculations. However, local meteorological conditions, complex topography,
and logistical concerns in glacierized regions make the measuring and modeling
of air temperature a difficult task. In this study, we investigate the spatial
distribution of 2 m air temperature over mountain glaciers and propose a modification
to an existing model to improve its representation. Spatially distributed meteorological
data from Haut Glacier d'Arolla (Switzerland), Place (Canada), and Juncal Norte
(Chile) Glaciers are used to examine approximate flow line temperatures during
their respective ablation seasons. During warm conditions (off-glacier temperatures
well above 0°C), observed air temperatures in the upper reaches of Place Glacier
and Haut Glacier d'Arolla decrease down glacier along the approximate flow line.
At Juncal Norte and Haut Glacier d'Arolla, an increase in air temperature is observed
over the glacier tongue. While the temperature behavior over the upper part can
be explained by the cooling effect of the glacier surface, the temperature increase
over the glacier tongue may be caused by several processes induced by the surrounding
warm atmosphere. In order to capture the latter effect, we add an additional term
to the Greuell and Böhm (GB) thermodynamic glacier wind model. For high off-glacier
temperatures, the modified GB model reduces root-mean-square error up to 32% and
provides a new approach for distributing air temperature over mountain glaciers
as a function of off-glacier temperatures and approximate glacier flow lines.
article_processing_charge: No
article_type: original
author:
- first_name: A.
full_name: Ayala, A.
last_name: Ayala
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
- first_name: J. M.
full_name: Shea, J. M.
last_name: Shea
citation:
ama: 'Ayala A, Pellicciotti F, Shea JM. Modeling 2 m air temperatures over mountain
glaciers: Exploring the influence of katabatic cooling and external warming. Journal
of Geophysical Research: Atmospheres. 2015;120(8):3139-3157. doi:10.1002/2015jd023137'
apa: 'Ayala, A., Pellicciotti, F., & Shea, J. M. (2015). Modeling 2 m air temperatures
over mountain glaciers: Exploring the influence of katabatic cooling and external
warming. Journal of Geophysical Research: Atmospheres. American Geophysical
Union. https://doi.org/10.1002/2015jd023137'
chicago: 'Ayala, A., Francesca Pellicciotti, and J. M. Shea. “Modeling 2 m Air Temperatures
over Mountain Glaciers: Exploring the Influence of Katabatic Cooling and External
Warming.” Journal of Geophysical Research: Atmospheres. American Geophysical
Union, 2015. https://doi.org/10.1002/2015jd023137.'
ieee: 'A. Ayala, F. Pellicciotti, and J. M. Shea, “Modeling 2 m air temperatures
over mountain glaciers: Exploring the influence of katabatic cooling and external
warming,” Journal of Geophysical Research: Atmospheres, vol. 120, no. 8.
American Geophysical Union, pp. 3139–3157, 2015.'
ista: 'Ayala A, Pellicciotti F, Shea JM. 2015. Modeling 2 m air temperatures over
mountain glaciers: Exploring the influence of katabatic cooling and external warming.
Journal of Geophysical Research: Atmospheres. 120(8), 3139–3157.'
mla: 'Ayala, A., et al. “Modeling 2 m Air Temperatures over Mountain Glaciers: Exploring
the Influence of Katabatic Cooling and External Warming.” Journal of Geophysical
Research: Atmospheres, vol. 120, no. 8, American Geophysical Union, 2015,
pp. 3139–57, doi:10.1002/2015jd023137.'
short: 'A. Ayala, F. Pellicciotti, J.M. Shea, Journal of Geophysical Research: Atmospheres
120 (2015) 3139–3157.'
date_created: 2023-02-20T08:16:28Z
date_published: 2015-04-18T00:00:00Z
date_updated: 2023-02-24T09:16:26Z
day: '18'
doi: 10.1002/2015jd023137
extern: '1'
intvolume: ' 120'
issue: '8'
keyword:
- Space and Planetary Science
- Earth and Planetary Sciences (miscellaneous)
- Atmospheric Science
- Geophysics
language:
- iso: eng
month: '04'
oa_version: Published Version
page: 3139-3157
publication: 'Journal of Geophysical Research: Atmospheres'
publication_identifier:
eissn:
- 2169-8996
issn:
- 2169-897X
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Modeling 2 m air temperatures over mountain glaciers: Exploring the influence
of katabatic cooling and external warming'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 120
year: '2015'
...
---
_id: '12881'
acknowledgement: This work was supported by the DFG (SPP 1527) and the EU (FP7, REA
grant no 291734).
article_processing_charge: No
author:
- first_name: Georg S
full_name: Martius, Georg S
id: 3A276B68-F248-11E8-B48F-1D18A9856A87
last_name: Martius
- first_name: Eckehard
full_name: Olbrich, Eckehard
last_name: Olbrich
citation:
ama: 'Martius GS, Olbrich E. Quantifying self-organizing behavior of autonomous
robots. In: Proceedings of the 13th European Conference on Artificial Life.
MIT Press; 2015:78. doi:10.7551/978-0-262-33027-5-ch018'
apa: 'Martius, G. S., & Olbrich, E. (2015). Quantifying self-organizing behavior
of autonomous robots. In Proceedings of the 13th European Conference on Artificial
Life (p. 78). York, United Kingdom: MIT Press. https://doi.org/10.7551/978-0-262-33027-5-ch018'
chicago: Martius, Georg S, and Eckehard Olbrich. “Quantifying Self-Organizing Behavior
of Autonomous Robots.” In Proceedings of the 13th European Conference on Artificial
Life, 78. MIT Press, 2015. https://doi.org/10.7551/978-0-262-33027-5-ch018.
ieee: G. S. Martius and E. Olbrich, “Quantifying self-organizing behavior of autonomous
robots,” in Proceedings of the 13th European Conference on Artificial Life,
York, United Kingdom, 2015, p. 78.
ista: 'Martius GS, Olbrich E. 2015. Quantifying self-organizing behavior of autonomous
robots. Proceedings of the 13th European Conference on Artificial Life. ECAL:
European Conference on Artificial Life, 78.'
mla: Martius, Georg S., and Eckehard Olbrich. “Quantifying Self-Organizing Behavior
of Autonomous Robots.” Proceedings of the 13th European Conference on Artificial
Life, MIT Press, 2015, p. 78, doi:10.7551/978-0-262-33027-5-ch018.
short: G.S. Martius, E. Olbrich, in:, Proceedings of the 13th European Conference
on Artificial Life, MIT Press, 2015, p. 78.
conference:
end_date: 2015-07-24
location: York, United Kingdom
name: 'ECAL: European Conference on Artificial Life'
start_date: 2015-07-20
date_created: 2023-04-30T22:01:07Z
date_published: 2015-07-01T00:00:00Z
date_updated: 2023-05-02T07:06:21Z
day: '01'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.7551/978-0-262-33027-5-ch018
ec_funded: 1
file:
- access_level: open_access
checksum: 880eabe59c9df12f06a882aa1bc4e600
content_type: application/pdf
creator: dernst
date_created: 2023-05-02T07:02:59Z
date_updated: 2023-05-02T07:02:59Z
file_id: '12882'
file_name: 2015_ECAL_Martius.pdf
file_size: 1674241
relation: main_file
success: 1
file_date_updated: 2023-05-02T07:02:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '78'
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Proceedings of the 13th European Conference on Artificial Life
publication_identifier:
isbn:
- '9780262330275'
publication_status: published
publisher: MIT Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantifying self-organizing behavior of autonomous robots
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2015'
...
---
_id: '1311'
abstract:
- lang: eng
text: In this paper, we develop an energy method to study finite speed of propagation
and waiting time phenomena for the stochastic porous media equation with linear
multiplicative noise in up to three spatial dimensions. Based on a novel iteration
technique and on stochastic counterparts of weighted integral estimates used in
the deterministic setting, we formulate a sufficient criterion on the growth of
initial data which locally guarantees a waiting time phenomenon to occur almost
surely. Up to a logarithmic factor, this criterion coincides with the optimal
criterion known from the deterministic setting. Our technique can be modified
to prove finite speed of propagation as well.
acknowledgement: The first author has been supported by the Lithuanian-Swiss co- operation
program under the project agreement No. CH-SMM-01/0.
author:
- first_name: Julian L
full_name: Julian Fischer
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
- first_name: Günther
full_name: Grün, Günther
last_name: Grün
citation:
ama: 'Fischer JL, Grün G. Finite speed of propagation and waiting times for the
stochastic porous medium equation: A unifying approach. SIAM Journal on Mathematical
Analysis. 2015;47(1):825-854. doi:10.1137/140960578'
apa: 'Fischer, J. L., & Grün, G. (2015). Finite speed of propagation and waiting
times for the stochastic porous medium equation: A unifying approach. SIAM
Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics
. https://doi.org/10.1137/140960578'
chicago: 'Fischer, Julian L, and Günther Grün. “Finite Speed of Propagation and
Waiting Times for the Stochastic Porous Medium Equation: A Unifying Approach.”
SIAM Journal on Mathematical Analysis. Society for Industrial and Applied
Mathematics , 2015. https://doi.org/10.1137/140960578.'
ieee: 'J. L. Fischer and G. Grün, “Finite speed of propagation and waiting times
for the stochastic porous medium equation: A unifying approach,” SIAM Journal
on Mathematical Analysis, vol. 47, no. 1. Society for Industrial and Applied
Mathematics , pp. 825–854, 2015.'
ista: 'Fischer JL, Grün G. 2015. Finite speed of propagation and waiting times for
the stochastic porous medium equation: A unifying approach. SIAM Journal on Mathematical
Analysis. 47(1), 825–854.'
mla: 'Fischer, Julian L., and Günther Grün. “Finite Speed of Propagation and Waiting
Times for the Stochastic Porous Medium Equation: A Unifying Approach.” SIAM
Journal on Mathematical Analysis, vol. 47, no. 1, Society for Industrial and
Applied Mathematics , 2015, pp. 825–54, doi:10.1137/140960578.'
short: J.L. Fischer, G. Grün, SIAM Journal on Mathematical Analysis 47 (2015) 825–854.
date_created: 2018-12-11T11:51:18Z
date_published: 2015-01-01T00:00:00Z
date_updated: 2021-01-12T06:49:48Z
day: '01'
doi: 10.1137/140960578
extern: 1
intvolume: ' 47'
issue: '1'
month: '01'
page: 825 - 854
publication: SIAM Journal on Mathematical Analysis
publication_status: published
publisher: 'Society for Industrial and Applied Mathematics '
publist_id: '5958'
quality_controlled: 0
status: public
title: 'Finite speed of propagation and waiting times for the stochastic porous medium
equation: A unifying approach'
type: journal_article
volume: 47
year: '2015'
...