---
_id: '1476'
abstract:
- lang: eng
  text: The dynamic assembly and disassembly of actin filaments is essential for the
    formation and transport of vesicles during endocytosis. In yeast, two types of
    actin structures, namely cortical patches and cytoplasmic cables, play a direct
    role in endocytosis, but how their interaction is regulated remains unclear. Here,
    we show that Srv2/CAP, an evolutionarily conserved actin regulator, is required
    for efficient endocytosis owing to its role in the formation of the actin patches
    that aid initial vesicle invagination and of the actin cables that these move
    along. Deletion of the SRV2 gene resulted in the appearance of aberrant fragmented
    actin cables that frequently moved past actin patches, the sites of endocytosis.
    We find that the C-terminal CARP domain of Srv2p is vitally important for the
    proper assembly of actin patches and cables; we also demonstrate that the N-terminal
    helical folded domain of Srv2 is required for its localization to actin patches,
    specifically to the ADP-actin rich region through an interaction with cofilin.
    These results demonstrate the in vivo roles of Srv2p in the regulation of the
    actin cytoskeleton during clathrin-mediated endocytosis
acknowledgement: We are grateful to Anthony Bretscher (Cornell University, NY) for
  providing the bni1-12 bnr1Δ (Y4135) strain. J.Y.T. was supported by a Japan Society
  for the Promotion of Science (JSPS) KAKENHI grant [grant number 26440067]; the Takeda
  Science Foundation; and the Novartis Foundation (Japan). J.T. was supported by a
  JSPS KAKENHI grant [grant number 25440054]; the Takeda Science Foundation; and the
  Kurata Memorial Hitachi Science and Technology Foundation. D.E.S. was supported
  by the European Union [grant number PCIG12-GA-2012-334077].
author:
- first_name: Junko
  full_name: Toshima, Junko
  last_name: Toshima
- first_name: Chika
  full_name: Horikomi, Chika
  last_name: Horikomi
- first_name: Asuka
  full_name: Okada, Asuka
  last_name: Okada
- first_name: Makiko
  full_name: Hatori, Makiko
  last_name: Hatori
- first_name: Makoto
  full_name: Nagano, Makoto
  last_name: Nagano
- first_name: Atsushi
  full_name: Masuda, Atsushi
  last_name: Masuda
- first_name: Wataru
  full_name: Yamamoto, Wataru
  last_name: Yamamoto
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Jiro
  full_name: Toshima, Jiro
  last_name: Toshima
citation:
  ama: Toshima J, Horikomi C, Okada A, et al. Srv2/CAP is required for polarized actin
    cable assembly and patch internalization during clathrin-mediated endocytosis.
    <i>Journal of Cell Science</i>. 2016;129(2):367-379. doi:<a href="https://doi.org/10.1242/jcs.176651">10.1242/jcs.176651</a>
  apa: Toshima, J., Horikomi, C., Okada, A., Hatori, M., Nagano, M., Masuda, A., …
    Toshima, J. (2016). Srv2/CAP is required for polarized actin cable assembly and
    patch internalization during clathrin-mediated endocytosis. <i>Journal of Cell
    Science</i>. Company of Biologists. <a href="https://doi.org/10.1242/jcs.176651">https://doi.org/10.1242/jcs.176651</a>
  chicago: Toshima, Junko, Chika Horikomi, Asuka Okada, Makiko Hatori, Makoto Nagano,
    Atsushi Masuda, Wataru Yamamoto, Daria E Siekhaus, and Jiro Toshima. “Srv2/CAP
    Is Required for Polarized Actin Cable Assembly and Patch Internalization during
    Clathrin-Mediated Endocytosis.” <i>Journal of Cell Science</i>. Company of Biologists,
    2016. <a href="https://doi.org/10.1242/jcs.176651">https://doi.org/10.1242/jcs.176651</a>.
  ieee: J. Toshima <i>et al.</i>, “Srv2/CAP is required for polarized actin cable
    assembly and patch internalization during clathrin-mediated endocytosis,” <i>Journal
    of Cell Science</i>, vol. 129, no. 2. Company of Biologists, pp. 367–379, 2016.
  ista: Toshima J, Horikomi C, Okada A, Hatori M, Nagano M, Masuda A, Yamamoto W,
    Siekhaus DE, Toshima J. 2016. Srv2/CAP is required for polarized actin cable assembly
    and patch internalization during clathrin-mediated endocytosis. Journal of Cell
    Science. 129(2), 367–379.
  mla: Toshima, Junko, et al. “Srv2/CAP Is Required for Polarized Actin Cable Assembly
    and Patch Internalization during Clathrin-Mediated Endocytosis.” <i>Journal of
    Cell Science</i>, vol. 129, no. 2, Company of Biologists, 2016, pp. 367–79, doi:<a
    href="https://doi.org/10.1242/jcs.176651">10.1242/jcs.176651</a>.
  short: J. Toshima, C. Horikomi, A. Okada, M. Hatori, M. Nagano, A. Masuda, W. Yamamoto,
    D.E. Siekhaus, J. Toshima, Journal of Cell Science 129 (2016) 367–379.
date_created: 2018-12-11T11:52:14Z
date_published: 2016-01-15T00:00:00Z
date_updated: 2021-01-12T06:51:00Z
day: '15'
ddc:
- '570'
- '576'
department:
- _id: DaSi
doi: 10.1242/jcs.176651
ec_funded: 1
file:
- access_level: open_access
  checksum: 2da0a09149a9ed956cdf79a95c17f08a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:08Z
  date_updated: 2020-07-14T12:44:56Z
  file_id: '4861'
  file_name: IST-2017-767-v1+1_367.full.pdf
  file_size: 7176912
  relation: main_file
file_date_updated: 2020-07-14T12:44:56Z
has_accepted_license: '1'
intvolume: '       129'
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 367 - 379
project:
- _id: 2536F660-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '334077'
  name: Investigating the role of transporters in invasive migration through junctions
publication: Journal of Cell Science
publication_status: published
publisher: Company of Biologists
publist_id: '5720'
pubrep_id: '767'
quality_controlled: '1'
scopus_import: 1
status: public
title: Srv2/CAP is required for polarized actin cable assembly and patch internalization
  during clathrin-mediated endocytosis
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 129
year: '2016'
...
---
_id: '1477'
abstract:
- lang: eng
  text: We consider partially observable Markov decision processes (POMDPs) with ω-regular
    conditions specified as parity objectives. The class of ω-regular languages provides
    a robust specification language to express properties in verification, and parity
    objectives are canonical forms to express them. The qualitative analysis problem
    given a POMDP and a parity objective asks whether there is a strategy to ensure
    that the objective is satisfied with probability 1 (resp. positive probability).
    While the qualitative analysis problems are undecidable even for special cases
    of parity objectives, we establish decidability (with optimal complexity) for
    POMDPs with all parity objectives under finite-memory strategies. We establish
    optimal (exponential) memory bounds and EXPTIME-completeness of the qualitative
    analysis problems under finite-memory strategies for POMDPs with parity objectives.
    We also present a practical approach, where we design heuristics to deal with
    the exponential complexity, and have applied our implementation on a number of
    POMDP examples.
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Mathieu
  full_name: Tracol, Mathieu
  id: 3F54FA38-F248-11E8-B48F-1D18A9856A87
  last_name: Tracol
citation:
  ama: Chatterjee K, Chmelik M, Tracol M. What is decidable about partially observable
    Markov decision processes with ω-regular objectives. <i>Journal of Computer and
    System Sciences</i>. 2016;82(5):878-911. doi:<a href="https://doi.org/10.1016/j.jcss.2016.02.009">10.1016/j.jcss.2016.02.009</a>
  apa: Chatterjee, K., Chmelik, M., &#38; Tracol, M. (2016). What is decidable about
    partially observable Markov decision processes with ω-regular objectives. <i>Journal
    of Computer and System Sciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcss.2016.02.009">https://doi.org/10.1016/j.jcss.2016.02.009</a>
  chicago: Chatterjee, Krishnendu, Martin Chmelik, and Mathieu Tracol. “What Is Decidable
    about Partially Observable Markov Decision Processes with ω-Regular Objectives.”
    <i>Journal of Computer and System Sciences</i>. Elsevier, 2016. <a href="https://doi.org/10.1016/j.jcss.2016.02.009">https://doi.org/10.1016/j.jcss.2016.02.009</a>.
  ieee: K. Chatterjee, M. Chmelik, and M. Tracol, “What is decidable about partially
    observable Markov decision processes with ω-regular objectives,” <i>Journal of
    Computer and System Sciences</i>, vol. 82, no. 5. Elsevier, pp. 878–911, 2016.
  ista: Chatterjee K, Chmelik M, Tracol M. 2016. What is decidable about partially
    observable Markov decision processes with ω-regular objectives. Journal of Computer
    and System Sciences. 82(5), 878–911.
  mla: Chatterjee, Krishnendu, et al. “What Is Decidable about Partially Observable
    Markov Decision Processes with ω-Regular Objectives.” <i>Journal of Computer and
    System Sciences</i>, vol. 82, no. 5, Elsevier, 2016, pp. 878–911, doi:<a href="https://doi.org/10.1016/j.jcss.2016.02.009">10.1016/j.jcss.2016.02.009</a>.
  short: K. Chatterjee, M. Chmelik, M. Tracol, Journal of Computer and System Sciences
    82 (2016) 878–911.
date_created: 2018-12-11T11:52:15Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2023-02-23T12:24:38Z
day: '01'
department:
- _id: KrCh
doi: 10.1016/j.jcss.2016.02.009
ec_funded: 1
external_id:
  arxiv:
  - '1309.2802'
intvolume: '        82'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1309.2802
month: '08'
oa: 1
oa_version: Preprint
page: 878 - 911
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
  name: Microsoft Research Faculty Fellowship
publication: Journal of Computer and System Sciences
publication_status: published
publisher: Elsevier
publist_id: '5718'
quality_controlled: '1'
related_material:
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  - id: '2295'
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    status: public
  - id: '5400'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: What is decidable about partially observable Markov decision processes with
  ω-regular objectives
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 82
year: '2016'
...
---
_id: '1478'
abstract:
- lang: eng
  text: We consider the Tonks-Girardeau gas subject to a random external potential.
    If the disorder is such that the underlying one-particle Hamiltonian displays
    localization (which is known to be generically the case), we show that there is
    exponential decay of correlations in the many-body eigenstates. Moreover, there
    is no Bose-Einstein condensation and no superfluidity, even at zero temperature.
article_number: '035002'
author:
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
- first_name: Simone
  full_name: Warzel, Simone
  last_name: Warzel
citation:
  ama: Seiringer R, Warzel S. Decay of correlations and absence of superfluidity in
    the disordered Tonks-Girardeau gas. <i>New Journal of Physics</i>. 2016;18(3).
    doi:<a href="https://doi.org/10.1088/1367-2630/18/3/035002">10.1088/1367-2630/18/3/035002</a>
  apa: Seiringer, R., &#38; Warzel, S. (2016). Decay of correlations and absence of
    superfluidity in the disordered Tonks-Girardeau gas. <i>New Journal of Physics</i>.
    IOP Publishing Ltd. <a href="https://doi.org/10.1088/1367-2630/18/3/035002">https://doi.org/10.1088/1367-2630/18/3/035002</a>
  chicago: Seiringer, Robert, and Simone Warzel. “Decay of Correlations and Absence
    of Superfluidity in the Disordered Tonks-Girardeau Gas.” <i>New Journal of Physics</i>.
    IOP Publishing Ltd., 2016. <a href="https://doi.org/10.1088/1367-2630/18/3/035002">https://doi.org/10.1088/1367-2630/18/3/035002</a>.
  ieee: R. Seiringer and S. Warzel, “Decay of correlations and absence of superfluidity
    in the disordered Tonks-Girardeau gas,” <i>New Journal of Physics</i>, vol. 18,
    no. 3. IOP Publishing Ltd., 2016.
  ista: Seiringer R, Warzel S. 2016. Decay of correlations and absence of superfluidity
    in the disordered Tonks-Girardeau gas. New Journal of Physics. 18(3), 035002.
  mla: Seiringer, Robert, and Simone Warzel. “Decay of Correlations and Absence of
    Superfluidity in the Disordered Tonks-Girardeau Gas.” <i>New Journal of Physics</i>,
    vol. 18, no. 3, 035002, IOP Publishing Ltd., 2016, doi:<a href="https://doi.org/10.1088/1367-2630/18/3/035002">10.1088/1367-2630/18/3/035002</a>.
  short: R. Seiringer, S. Warzel, New Journal of Physics 18 (2016).
date_created: 2018-12-11T11:52:15Z
date_published: 2016-02-29T00:00:00Z
date_updated: 2021-01-12T06:51:01Z
day: '29'
ddc:
- '510'
- '530'
department:
- _id: RoSe
doi: 10.1088/1367-2630/18/3/035002
file:
- access_level: open_access
  checksum: 4f959eabc19d2a2f518318a450a4d424
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  creator: system
  date_created: 2018-12-12T10:17:22Z
  date_updated: 2020-07-14T12:44:56Z
  file_id: '5276'
  file_name: IST-2016-579-v1+1_njp_18_3_035002.pdf
  file_size: 965607
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file_date_updated: 2020-07-14T12:44:56Z
has_accepted_license: '1'
intvolume: '        18'
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27533_N27
  name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: New Journal of Physics
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '5716'
pubrep_id: '579'
quality_controlled: '1'
scopus_import: 1
status: public
title: Decay of correlations and absence of superfluidity in the disordered Tonks-Girardeau
  gas
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2016'
...
---
_id: '5445'
abstract:
- lang: eng
  text: 'We consider the quantitative analysis problem for interprocedural control-flow
    graphs (ICFGs). The input consists of an ICFG, a positive weight function that
    assigns every transition a positive integer-valued number, and a labelling of
    the transitions (events) as good, bad, and neutral events. The weight function
    assigns to each transition a numerical value that represents ameasure of how good
    or bad an event is. The quantitative analysis problem asks whether there is a
    run of the ICFG where the ratio of the sum of the numerical weights of good events
    versus the sum of weights of bad events in the long-run is at least a given threshold
    (or equivalently, to compute the maximal ratio among all valid paths in the ICFG).
    The quantitative analysis problem for ICFGs can be solved in polynomial time,
    and we present an efficient and practical algorithm for the problem. We show that
    several problems relevant for static program analysis, such as estimating the
    worst-case execution time of a program or the average energy consumption of a
    mobile application, can be modeled in our framework. We have implemented our algorithm
    as a tool in the Java Soot framework. We demonstrate the effectiveness of our
    approach with two case studies. First, we show that our framework provides a sound
    approach (no false positives) for the analysis of inefficiently-used containers.
    Second, we show that our approach can also be used for static profiling of programs
    which reasons about methods that are frequently invoked. Our experimental results
    show that our tool scales to relatively large benchmarks, and discovers relevant
    and useful information that can be used to optimize performance of the programs. '
alternative_title:
- IST Austria Technical Report
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Yaron
  full_name: Velner, Yaron
  last_name: Velner
citation:
  ama: Chatterjee K, Pavlogiannis A, Velner Y. <i>Quantitative Interprocedural Analysis</i>.
    IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">10.15479/AT:IST-2016-523-v1-1</a>
  apa: Chatterjee, K., Pavlogiannis, A., &#38; Velner, Y. (2016). <i>Quantitative
    interprocedural analysis</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">https://doi.org/10.15479/AT:IST-2016-523-v1-1</a>
  chicago: Chatterjee, Krishnendu, Andreas Pavlogiannis, and Yaron Velner. <i>Quantitative
    Interprocedural Analysis</i>. IST Austria, 2016. <a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">https://doi.org/10.15479/AT:IST-2016-523-v1-1</a>.
  ieee: K. Chatterjee, A. Pavlogiannis, and Y. Velner, <i>Quantitative interprocedural
    analysis</i>. IST Austria, 2016.
  ista: Chatterjee K, Pavlogiannis A, Velner Y. 2016. Quantitative interprocedural
    analysis, IST Austria, 33p.
  mla: Chatterjee, Krishnendu, et al. <i>Quantitative Interprocedural Analysis</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2016-523-v1-1">10.15479/AT:IST-2016-523-v1-1</a>.
  short: K. Chatterjee, A. Pavlogiannis, Y. Velner, Quantitative Interprocedural Analysis,
    IST Austria, 2016.
date_created: 2018-12-12T11:39:22Z
date_published: 2016-03-31T00:00:00Z
date_updated: 2023-02-23T10:06:22Z
day: '31'
ddc:
- '005'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2016-523-v1-1
file:
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  checksum: cef516fa091925b5868813e355268fb4
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  date_created: 2018-12-12T11:53:52Z
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  file_id: '5513'
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file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '33'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '523'
related_material:
  record:
  - id: '1604'
    relation: later_version
    status: public
status: public
title: Quantitative interprocedural analysis
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5446'
abstract:
- lang: eng
  text: "We study the problem of developing efficient approaches for proving termination
    of recursive programs with one-dimensional arrays. Ranking functions serve as
    a sound and complete approach for proving termination of non-recursive programs
    without array operations. First, we generalize ranking functions to the notion
    of measure functions, and prove that measure functions (i) provide a sound method
    to prove termination of recursive programs (with one-dimensional arrays), and
    (ii) is both sound and complete over recursive programs without array operations.
    Our second contribution is the synthesis of measure functions of specific forms
    in polynomial time. More precisely, we prove that (i) polynomial measure functions
    over recursive programs can be synthesized in polynomial time through Farkas’
    Lemma and Handelman’s Theorem, and (ii) measure functions involving logarithm
    and exponentiation can be synthesized in polynomial time through abstraction of
    logarithmic or exponential terms and Handelman’s Theorem. A key application of
    our method is the worst-case analysis of recursive programs. While previous methods
    obtain worst-case polynomial bounds of the form O(n^k), where k is an integer,
    our polynomial time methods can synthesize bounds of the form O(n log n), as well
    as O(n^x), where x is not an integer. We show the applicability of our automated
    technique to obtain worst-case complexity of classical recursive algorithms such
    as (i) Merge-Sort, the divideand-\r\nconquer algorithm for the Closest-Pair problem,
    where we obtain O(n log n) worst-case bound, and (ii) Karatsuba’s algorithm for
    polynomial multiplication and Strassen’s algorithm for matrix multiplication,
    where we obtain O(n^x) bound, where x is not an integer and close to the best-known
    bounds for the respective algorithms. Finally, we present experimental results
    to demonstrate the\r\neffectiveness of our approach."
alternative_title:
- IST Austria Technical Report
author:
- first_name: '1'
  full_name: Anonymous, 1
  last_name: Anonymous
- first_name: '2'
  full_name: Anonymous, 2
  last_name: Anonymous
- first_name: '3'
  full_name: Anonymous, 3
  last_name: Anonymous
citation:
  ama: Anonymous 1, Anonymous 2, Anonymous 3. <i>Termination and Worst-Case Analysis
    of Recursive Programs</i>. IST Austria; 2016.
  apa: Anonymous, 1, Anonymous, 2, &#38; Anonymous, 3. (2016). <i>Termination and
    worst-case analysis of recursive programs</i>. IST Austria.
  chicago: Anonymous, 1, 2 Anonymous, and 3 Anonymous. <i>Termination and Worst-Case
    Analysis of Recursive Programs</i>. IST Austria, 2016.
  ieee: 1 Anonymous, 2 Anonymous, and 3 Anonymous, <i>Termination and worst-case analysis
    of recursive programs</i>. IST Austria, 2016.
  ista: Anonymous 1, Anonymous 2, Anonymous 3. 2016. Termination and worst-case analysis
    of recursive programs, IST Austria, 26p.
  mla: Anonymous, 1, et al. <i>Termination and Worst-Case Analysis of Recursive Programs</i>.
    IST Austria, 2016.
  short: 1 Anonymous, 2 Anonymous, 3 Anonymous, Termination and Worst-Case Analysis
    of Recursive Programs, IST Austria, 2016.
date_created: 2018-12-12T11:39:23Z
date_published: 2016-07-15T00:00:00Z
date_updated: 2020-07-14T23:05:05Z
day: '15'
ddc:
- '000'
file:
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  file_name: popl2017a.pdf
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  relation: main_file
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  checksum: fc08022bfbaac07bac047a9407c0bbb3
  content_type: text/plain
  creator: dernst
  date_created: 2019-05-10T13:27:31Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '6404'
  file_name: author_names.txt
  file_size: 258
  relation: main_file
file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '26'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '618'
status: public
title: Termination and worst-case analysis of recursive programs
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5447'
abstract:
- lang: eng
  text: "We consider the problem of developing automated techniques to aid the average-case
    complexity analysis of programs. Several classical textbook algorithms have quite
    efficient average-case complexity, whereas the corresponding worst-case bounds
    are either inefficient (e.g., QUICK-SORT), or completely ineffective (e.g., COUPONCOLLECTOR).
    Since the main focus of average-case analysis is to obtain efficient bounds, we
    consider bounds that are either logarithmic,\r\nlinear, or almost-linear (O(log
    n), O(n), O(n · log n),\r\nrespectively, where n represents the size of the input).
    Our main contribution is a sound approach for deriving such average-case bounds
    for randomized recursive programs. Our approach is efficient (a simple linear-time
    algorithm), and it is based on (a) the analysis of recurrence relations induced
    by randomized algorithms, and (b) a guess-and-check technique. Our approach can
    infer the asymptotically optimal average-case bounds for classical randomized
    algorithms, including RANDOMIZED-SEARCH, QUICKSORT, QUICK-SELECT, COUPON-COLLECTOR,
    where the worstcase\r\nbounds are either inefficient (such as linear as compared
    to logarithmic of average-case, or quadratic as compared to linear or almost-linear
    of average-case), or ineffective. We have implemented our approach, and the experimental
    results show that we obtain the bounds efficiently for various classical algorithms."
alternative_title:
- IST Austria Technical Report
author:
- first_name: '1'
  full_name: Anonymous, 1
  last_name: Anonymous
- first_name: '2'
  full_name: Anonymous, 2
  last_name: Anonymous
- first_name: '3'
  full_name: Anonymous, 3
  last_name: Anonymous
citation:
  ama: 'Anonymous 1, Anonymous 2, Anonymous 3. <i>Average-Case Analysis of Programs:
    Automated Recurrence Analysis for Almost-Linear Bounds</i>. IST Austria; 2016.'
  apa: 'Anonymous, 1, Anonymous, 2, &#38; Anonymous, 3. (2016). <i>Average-case analysis
    of programs: Automated recurrence analysis for almost-linear bounds</i>. IST Austria.'
  chicago: 'Anonymous, 1, 2 Anonymous, and 3 Anonymous. <i>Average-Case Analysis of
    Programs: Automated Recurrence Analysis for Almost-Linear Bounds</i>. IST Austria,
    2016.'
  ieee: '1 Anonymous, 2 Anonymous, and 3 Anonymous, <i>Average-case analysis of programs:
    Automated recurrence analysis for almost-linear bounds</i>. IST Austria, 2016.'
  ista: 'Anonymous 1, Anonymous 2, Anonymous 3. 2016. Average-case analysis of programs:
    Automated recurrence analysis for almost-linear bounds, IST Austria, 20p.'
  mla: 'Anonymous, 1, et al. <i>Average-Case Analysis of Programs: Automated Recurrence
    Analysis for Almost-Linear Bounds</i>. IST Austria, 2016.'
  short: '1 Anonymous, 2 Anonymous, 3 Anonymous, Average-Case Analysis of Programs:
    Automated Recurrence Analysis for Almost-Linear Bounds, IST Austria, 2016.'
date_created: 2018-12-12T11:39:23Z
date_published: 2016-07-15T00:00:00Z
date_updated: 2020-07-14T23:05:06Z
day: '15'
ddc:
- '000'
file:
- access_level: closed
  checksum: cf53cdb6d092e68db0b4a0a1506ef8fb
  content_type: text/plain
  creator: dernst
  date_created: 2019-05-10T13:32:16Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '6406'
  file_name: listofauthors.txt
  file_size: 281
  relation: main_file
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  checksum: 7bdd94ba13aa0dec9c46887fcf13870b
  content_type: application/pdf
  creator: dernst
  date_created: 2019-05-10T13:32:16Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '6407'
  file_name: popl2017b.pdf
  file_size: 563642
  relation: main_file
file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '619'
status: public
title: 'Average-case analysis of programs: Automated recurrence analysis for almost-linear
  bounds'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5448'
abstract:
- lang: eng
  text: "We present a new dynamic partial-order reduction method for stateless model
    checking of concurrent programs. A common approach for exploring program behaviors
    relies on enumerating the traces of the program, without storing the visited states
    (aka stateless exploration). As the number of distinct traces grows exponentially,
    dynamic partial-order reduction (DPOR) techniques have been successfully used
    to partition the space of traces into equivalence classes (Mazurkiewicz partitioning),
    with the goal of exploring only few representative traces from each class.\r\nWe
    introduce a new equivalence on traces under sequential consistency semantics,
    which we call the observation equivalence. Two traces are observationally equivalent
    if every read event observes the same write event in both traces. While the traditional
    Mazurkiewicz equivalence is control-centric, our new definition is data-centric.
    We show that our observation equivalence is coarser than the Mazurkiewicz equivalence,
    and in many cases even exponentially coarser. We devise a DPOR exploration of
    the trace space, called data-centric DPOR, based on the observation equivalence.\r\n1.
    For acyclic architectures, our algorithm is guaranteed to explore exactly one
    representative trace from each observation class, while spending polynomial time
    per class. Hence, our algorithm is optimal wrt the observation equivalence, and
    in several cases explores exponentially fewer traces than any enumerative method
    based on the Mazurkiewicz equivalence.\r\n2. For cyclic architectures, we consider
    an equivalence between traces which is finer than the observation equivalence;
    but coarser than the Mazurkiewicz equivalence, and in some cases is exponentially
    coarser. Our data-centric DPOR algorithm remains optimal under this trace equivalence.
    \r\nFinally, we perform a basic experimental comparison between the existing Mazurkiewicz-based
    DPOR and our data-centric DPOR on a set of academic benchmarks. Our results show
    a significant reduction in both running time and the number of explored equivalence
    classes."
alternative_title:
- IST Austria Technical Report
arxiv: 1
author:
- first_name: '1'
  full_name: Anonymous, 1
  last_name: Anonymous
- first_name: '2'
  full_name: Anonymous, 2
  last_name: Anonymous
- first_name: '3'
  full_name: Anonymous, 3
  last_name: Anonymous
- first_name: '4'
  full_name: Anonymous, 4
  last_name: Anonymous
citation:
  ama: Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4. <i>Data-Centric Dynamic
    Partial Order Reduction</i>. IST Austria; 2016.
  apa: Anonymous, 1, Anonymous, 2, Anonymous, 3, &#38; Anonymous, 4. (2016). <i>Data-centric
    dynamic partial order reduction</i>. IST Austria.
  chicago: Anonymous, 1, 2 Anonymous, 3 Anonymous, and 4 Anonymous. <i>Data-Centric
    Dynamic Partial Order Reduction</i>. IST Austria, 2016.
  ieee: 1 Anonymous, 2 Anonymous, 3 Anonymous, and 4 Anonymous, <i>Data-centric dynamic
    partial order reduction</i>. IST Austria, 2016.
  ista: Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4. 2016. Data-centric dynamic
    partial order reduction, IST Austria, 20p.
  mla: Anonymous, 1, et al. <i>Data-Centric Dynamic Partial Order Reduction</i>. IST
    Austria, 2016.
  short: 1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, Data-Centric Dynamic
    Partial Order Reduction, IST Austria, 2016.
date_created: 2018-12-12T11:39:23Z
date_published: 2016-07-15T00:00:00Z
date_updated: 2023-02-23T12:27:16Z
day: '15'
ddc:
- '000'
external_id:
  arxiv:
  - '1610.01188'
file:
- access_level: open_access
  checksum: 1d69252d66bcdf782615ddfb911d2957
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:45Z
  date_updated: 2020-07-14T12:46:58Z
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  file_name: IST-2016-620-v1+1_main.pdf
  file_size: 538881
  relation: main_file
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  checksum: deabb0eb8f237cae4f9542b28b0b6eb2
  content_type: text/plain
  creator: dernst
  date_created: 2019-05-10T13:30:40Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '6405'
  file_name: authornames.txt
  file_size: 121
  relation: main_file
file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '20'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '620'
related_material:
  record:
  - id: '10417'
    relation: later_version
    status: public
  - id: '5456'
    relation: later_version
    status: public
status: public
title: Data-centric dynamic partial order reduction
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5449'
abstract:
- lang: eng
  text: "The fixation probability is the probability that a new mutant introduced
    in a homogeneous population eventually takes over the entire population.\r\nThe
    fixation probability is a fundamental quantity of natural selection, and known
    to depend on the population structure.\r\nAmplifiers of natural selection are
    population structures which increase the fixation probability of advantageous
    mutants, as compared to the baseline case of well-mixed populations. In this work
    we focus on symmetric population structures represented as undirected graphs.
    In the regime of undirected graphs, the strongest amplifier known has been the
    Star graph, and the existence of undirected graphs with stronger amplification
    properties has remained open for over a decade.\r\nIn this work we present the
    Comet and Comet-swarm families of undirected graphs. We show that for a range
    of fitness values of the mutants, the Comet and Comet-swarm graphs have fixation
    probability strictly larger than the fixation probability of the Star graph, for
    fixed population size and at the limit of large populations, respectively."
alternative_title:
- IST Austria Technical Report
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: 'Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Amplification on Undirected
    Population Structures: Comets Beat Stars</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">10.15479/AT:IST-2016-648-v1-1</a>'
  apa: 'Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Amplification
    on undirected population structures: Comets beat stars</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">https://doi.org/10.15479/AT:IST-2016-648-v1-1</a>'
  chicago: 'Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Amplification on Undirected Population Structures: Comets Beat Stars</i>.
    IST Austria, 2016. <a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">https://doi.org/10.15479/AT:IST-2016-648-v1-1</a>.'
  ieee: 'A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Amplification
    on undirected population structures: Comets beat stars</i>. IST Austria, 2016.'
  ista: 'Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Amplification on
    undirected population structures: Comets beat stars, IST Austria, 22p.'
  mla: 'Pavlogiannis, Andreas, et al. <i>Amplification on Undirected Population Structures:
    Comets Beat Stars</i>. IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2016-648-v1-1">10.15479/AT:IST-2016-648-v1-1</a>.'
  short: 'A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Amplification on Undirected
    Population Structures: Comets Beat Stars, IST Austria, 2016.'
date_created: 2018-12-12T11:39:24Z
date_published: 2016-11-09T00:00:00Z
date_updated: 2023-02-23T12:22:21Z
day: '09'
ddc:
- '519'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2016-648-v1-1
file:
- access_level: open_access
  checksum: 8345a8c1e7d7f0cd92516d182b7fc59e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:54:07Z
  date_updated: 2020-07-14T12:46:58Z
  file_id: '5529'
  file_name: IST-2016-648-v1+1_tr.pdf
  file_size: 1264221
  relation: main_file
file_date_updated: 2020-07-14T12:46:58Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Updated Version
page: '22'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '648'
related_material:
  record:
  - id: '512'
    relation: later_version
    status: public
status: public
title: 'Amplification on undirected population structures: Comets beat stars'
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5451'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Strong Amplifiers of Natural
    Selection</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">10.15479/AT:IST-2016-728-v1-1</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Strong
    amplifiers of natural selection</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">https://doi.org/10.15479/AT:IST-2016-728-v1-1</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Strong Amplifiers of Natural Selection</i>. IST Austria, 2016. <a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">https://doi.org/10.15479/AT:IST-2016-728-v1-1</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Strong amplifiers
    of natural selection</i>. IST Austria, 2016.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Strong amplifiers
    of natural selection, IST Austria, 34p.
  mla: Pavlogiannis, Andreas, et al. <i>Strong Amplifiers of Natural Selection</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2016-728-v1-1">10.15479/AT:IST-2016-728-v1-1</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Strong Amplifiers of
    Natural Selection, IST Austria, 2016.
date_created: 2018-12-12T11:39:24Z
date_published: 2016-12-30T00:00:00Z
date_updated: 2023-02-23T12:27:05Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2016-728-v1-1
file:
- access_level: open_access
  checksum: 7b8bb17c322c0556acba6ac169fa71c1
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:04Z
  date_updated: 2020-07-14T12:46:59Z
  file_id: '5465'
  file_name: IST-2016-728-v1+1_main.pdf
  file_size: 1014732
  relation: main_file
file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '34'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '728'
status: public
title: Strong amplifiers of natural selection
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5452'
alternative_title:
- IST Austria Technical Report
article_processing_charge: No
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Arbitrarily Strong Amplifiers
    of Natural Selection</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">10.15479/AT:IST-2017-728-v2-1</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Arbitrarily
    strong amplifiers of natural selection</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">https://doi.org/10.15479/AT:IST-2017-728-v2-1</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria,
    2016. <a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">https://doi.org/10.15479/AT:IST-2017-728-v2-1</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Arbitrarily strong
    amplifiers of natural selection</i>. IST Austria, 2016.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Arbitrarily strong
    amplifiers of natural selection, IST Austria, 32p.
  mla: Pavlogiannis, Andreas, et al. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2017-728-v2-1">10.15479/AT:IST-2017-728-v2-1</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Arbitrarily Strong
    Amplifiers of Natural Selection, IST Austria, 2016.
date_created: 2018-12-12T11:39:25Z
date_published: 2016-12-30T00:00:00Z
date_updated: 2024-02-21T13:48:42Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2017-728-v2-1
ec_funded: 1
file:
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  checksum: 58e895f26c82f560c0f0989bf8b08599
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  creator: system
  date_created: 2018-12-12T11:52:59Z
  date_updated: 2020-07-14T12:46:59Z
  file_id: '5460'
  file_name: IST-2017-728-v2+1_main.pdf
  file_size: 811558
  relation: main_file
file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '32'
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '750'
related_material:
  record:
  - id: '5453'
    relation: later_version
    status: public
  - id: '5559'
    relation: popular_science
    status: public
status: public
title: Arbitrarily strong amplifiers of natural selection
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5453'
alternative_title:
- IST Austria Technical Report
author:
- first_name: Andreas
  full_name: Pavlogiannis, Andreas
  id: 49704004-F248-11E8-B48F-1D18A9856A87
  last_name: Pavlogiannis
  orcid: 0000-0002-8943-0722
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Arbitrarily Strong Amplifiers
    of Natural Selection</i>. IST Austria; 2016. doi:<a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">10.15479/AT:IST-2017-749-v3-1</a>
  apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Arbitrarily
    strong amplifiers of natural selection</i>. IST Austria. <a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">https://doi.org/10.15479/AT:IST-2017-749-v3-1</a>
  chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria,
    2016. <a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">https://doi.org/10.15479/AT:IST-2017-749-v3-1</a>.
  ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Arbitrarily strong
    amplifiers of natural selection</i>. IST Austria, 2016.
  ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Arbitrarily strong
    amplifiers of natural selection, IST Austria, 34p.
  mla: Pavlogiannis, Andreas, et al. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>.
    IST Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:IST-2017-749-v3-1">10.15479/AT:IST-2017-749-v3-1</a>.
  short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Arbitrarily Strong
    Amplifiers of Natural Selection, IST Austria, 2016.
date_created: 2018-12-12T11:39:25Z
date_published: 2016-12-30T00:00:00Z
date_updated: 2023-02-23T12:27:07Z
day: '30'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.15479/AT:IST-2017-749-v3-1
file:
- access_level: open_access
  checksum: 83b0313dab3bff4bdb6ac38695026fda
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T11:53:13Z
  date_updated: 2020-07-14T12:46:59Z
  file_id: '5474'
  file_name: IST-2017-749-v3+1_main.pdf
  file_size: 1015647
  relation: main_file
file_date_updated: 2020-07-14T12:46:59Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: '34'
publication_identifier:
  issn:
  - 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '755'
related_material:
  record:
  - id: '5452'
    relation: earlier_version
    status: public
status: public
title: Arbitrarily strong amplifiers of natural selection
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5550'
abstract:
- lang: eng
  text: "We collected flower colour information on species in the tribe Antirrhineae
    from taxonomic literature. We also retreived molecular data from GenBank for as
    many of these species as possible to estimate phylogenetic relationships among
    these taxa. We then used the R package 'diversitree' to examine patterns of evolutionary
    transitions between anthocyanin and yellow pigmentation across the phylogeny.\r\n\r\nFor
    full details of the methods see:\r\nEllis TJ and Field DL \"Repeated gains in
    yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae”,
    Annals of Botany (in press)"
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Ellis, Thomas
  id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
  last_name: Ellis
  orcid: 0000-0002-8511-0254
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
citation:
  ama: Ellis T, Field D. Flower colour data and phylogeny (NEXUS) files. 2016. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:34">10.15479/AT:ISTA:34</a>
  apa: Ellis, T., &#38; Field, D. (2016). Flower colour data and phylogeny (NEXUS)
    files. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:34">https://doi.org/10.15479/AT:ISTA:34</a>
  chicago: Ellis, Thomas, and David Field. “Flower Colour Data and Phylogeny (NEXUS)
    Files.” Institute of Science and Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:34">https://doi.org/10.15479/AT:ISTA:34</a>.
  ieee: T. Ellis and D. Field, “Flower colour data and phylogeny (NEXUS) files.” Institute
    of Science and Technology Austria, 2016.
  ista: Ellis T, Field D. 2016. Flower colour data and phylogeny (NEXUS) files, Institute
    of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:34">10.15479/AT:ISTA:34</a>.
  mla: Ellis, Thomas, and David Field. <i>Flower Colour Data and Phylogeny (NEXUS)
    Files</i>. Institute of Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:34">10.15479/AT:ISTA:34</a>.
  short: T. Ellis, D. Field, (2016).
datarep_id: '34'
date_created: 2018-12-12T12:31:29Z
date_published: 2016-02-19T00:00:00Z
date_updated: 2024-02-21T13:49:54Z
day: '19'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:34
file:
- access_level: open_access
  checksum: 950f85b80427d357bfeff09608ba02e9
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:02:27Z
  date_updated: 2020-07-14T12:47:00Z
  file_id: '5594'
  file_name: IST-2016-34-v1+1_tellis_flower_colour_data.zip
  file_size: 4468543
  relation: main_file
file_date_updated: 2020-07-14T12:47:00Z
has_accepted_license: '1'
license: https://creativecommons.org/publicdomain/zero/1.0/
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
publist_id: '5828'
related_material:
  record:
  - id: '1382'
    relation: research_paper
    status: public
status: public
title: Flower colour data and phylogeny (NEXUS) files
tmp:
  image: /images/cc_0.png
  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
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  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5551'
abstract:
- lang: eng
  text: "Data from array experiments investigating pollinator behaviour on snapdragons
    in controlled conditions, and their effect on plant mating. Data were collected
    as part of Tom Ellis' PhD thesis , submitted February 2016.\r\n\r\nWe placed a
    total of 36 plants in a grid inside a closed organza tent, with a single hive
    of commercially bred bumblebees (Bombus hortorum). We used only the yellow-flowered
    Antirrhinum majus striatum and the magenta-flowered Antirrhinum majus pseudomajus,
    at ratios of 6:36, 12:24, 18:18, 24:12 and 30:6.\r\n\r\nAfter 24 hours to learn
    how to deal with snapdragons, I observed pollinators foraging on plants, and recorded
    the transitions between plants. Thereafter seeds on plants were allowed to develops.
    A sample of these were grown to maturity when their flower colour could be determined,
    and they were scored as yellow, magenta, or hybrid."
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Ellis, Thomas
  id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
  last_name: Ellis
  orcid: 0000-0002-8511-0254
citation:
  ama: Ellis T. Data on pollinator observations and offpsring phenotypes. 2016. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:35">10.15479/AT:ISTA:35</a>
  apa: Ellis, T. (2016). Data on pollinator observations and offpsring phenotypes.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:35">https://doi.org/10.15479/AT:ISTA:35</a>
  chicago: Ellis, Thomas. “Data on Pollinator Observations and Offpsring Phenotypes.”
    Institute of Science and Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:35">https://doi.org/10.15479/AT:ISTA:35</a>.
  ieee: T. Ellis, “Data on pollinator observations and offpsring phenotypes.” Institute
    of Science and Technology Austria, 2016.
  ista: Ellis T. 2016. Data on pollinator observations and offpsring phenotypes, Institute
    of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:35">10.15479/AT:ISTA:35</a>.
  mla: Ellis, Thomas. <i>Data on Pollinator Observations and Offpsring Phenotypes</i>.
    Institute of Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:35">10.15479/AT:ISTA:35</a>.
  short: T. Ellis, (2016).
contributor:
- first_name: David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
- first_name: Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
datarep_id: '35'
date_created: 2018-12-12T12:31:29Z
date_published: 2016-02-19T00:00:00Z
date_updated: 2024-02-21T13:51:27Z
day: '19'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:35
file:
- access_level: open_access
  checksum: aa3eb85d52b110cd192aa23147c4d4f3
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:05:12Z
  date_updated: 2020-07-14T12:47:01Z
  file_id: '5640'
  file_name: IST-2016-35-v1+1_array_data.zip
  file_size: 32775
  relation: main_file
file_date_updated: 2020-07-14T12:47:01Z
has_accepted_license: '1'
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '1398'
    relation: research_paper
    status: public
status: public
title: Data on pollinator observations and offpsring phenotypes
tmp:
  image: /images/cc_0.png
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  short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5552'
abstract:
- lang: eng
  text: "Data on pollinator visitation to wild snapdragons in a natural hybrid zone,
    collected as part of Tom Ellis' PhD thesis (submitted February 2016).\r\n\r\nSnapdragon
    flowers have a mouth-like structure which pollinators must open to access nectar.
    We placed 5mm cellophane tags in these mouths, which are held in place by the
    pressure of the flower until a pollinator visits. When she opens the flower, the
    tag drops out, and one can infer a visit. We surveyed plants over multiple days
    in 2010, 2011 and 2012.\r\n\r\nAlso included are data on phenotypic and demographic
    variables which may be explanatory variables for pollinator visitation."
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Ellis, Thomas
  id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
  last_name: Ellis
  orcid: 0000-0002-8511-0254
citation:
  ama: Ellis T. Pollinator visitation data for wild Antirrhinum majus plants, with
    phenotypic and frequency data. 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:36">10.15479/AT:ISTA:36</a>
  apa: Ellis, T. (2016). Pollinator visitation data for wild Antirrhinum majus plants,
    with phenotypic and frequency data. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:36">https://doi.org/10.15479/AT:ISTA:36</a>
  chicago: Ellis, Thomas. “Pollinator Visitation Data for Wild Antirrhinum Majus Plants,
    with Phenotypic and Frequency Data.” Institute of Science and Technology Austria,
    2016. <a href="https://doi.org/10.15479/AT:ISTA:36">https://doi.org/10.15479/AT:ISTA:36</a>.
  ieee: T. Ellis, “Pollinator visitation data for wild Antirrhinum majus plants, with
    phenotypic and frequency data.” Institute of Science and Technology Austria, 2016.
  ista: Ellis T. 2016. Pollinator visitation data for wild Antirrhinum majus plants,
    with phenotypic and frequency data., Institute of Science and Technology Austria,
    <a href="https://doi.org/10.15479/AT:ISTA:36">10.15479/AT:ISTA:36</a>.
  mla: Ellis, Thomas. <i>Pollinator Visitation Data for Wild Antirrhinum Majus Plants,
    with Phenotypic and Frequency Data.</i> Institute of Science and Technology Austria,
    2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:36">10.15479/AT:ISTA:36</a>.
  short: T. Ellis, (2016).
contributor:
- first_name: David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
- first_name: Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
datarep_id: '36'
date_created: 2018-12-12T12:31:30Z
date_published: 2016-02-19T00:00:00Z
date_updated: 2024-02-21T13:51:40Z
day: '19'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:36
file:
- access_level: open_access
  checksum: cbc61b523d4d475a04a737d50dc470ef
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:03:07Z
  date_updated: 2020-07-14T12:47:01Z
  file_id: '5625'
  file_name: IST-2016-36-v1+1_tag_assay_archive.zip
  file_size: 44905
  relation: main_file
file_date_updated: 2020-07-14T12:47:01Z
has_accepted_license: '1'
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '1398'
    relation: research_paper
    status: public
status: public
title: Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic
  and frequency data.
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5553'
abstract:
- lang: eng
  text: "Genotypic, phenotypic and demographic data for 2128 wild snapdragons and
    1127 open-pollinated progeny from a natural hybrid zone, collected as part of
    Tom Ellis' PhD thesis (submitted) February 2016).\r\n\r\nTissue samples were sent
    to LGC Genomics in Berlin for DNA extraction, and genotyping at 70 SNP markers
    by KASPR genotyping. 29 of these SNPs failed to amplify reliably, and have been
    removed from this dataset.\r\n\r\nOther data were retreived from an online database
    of this population at www.antspec.org."
article_processing_charge: No
author:
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Thomas
  full_name: Ellis, Thomas
  id: 3153D6D4-F248-11E8-B48F-1D18A9856A87
  last_name: Ellis
  orcid: 0000-0002-8511-0254
citation:
  ama: Field D, Ellis T. Inference of mating patterns among wild snapdragons in a
    natural hybrid zone in 2012. 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:37">10.15479/AT:ISTA:37</a>
  apa: Field, D., &#38; Ellis, T. (2016). Inference of mating patterns among wild
    snapdragons in a natural hybrid zone in 2012. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/AT:ISTA:37">https://doi.org/10.15479/AT:ISTA:37</a>
  chicago: Field, David, and Thomas Ellis. “Inference of Mating Patterns among Wild
    Snapdragons in a Natural Hybrid Zone in 2012.” Institute of Science and Technology
    Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:37">https://doi.org/10.15479/AT:ISTA:37</a>.
  ieee: D. Field and T. Ellis, “Inference of mating patterns among wild snapdragons
    in a natural hybrid zone in 2012.” Institute of Science and Technology Austria,
    2016.
  ista: Field D, Ellis T. 2016. Inference of mating patterns among wild snapdragons
    in a natural hybrid zone in 2012, Institute of Science and Technology Austria,
    <a href="https://doi.org/10.15479/AT:ISTA:37">10.15479/AT:ISTA:37</a>.
  mla: Field, David, and Thomas Ellis. <i>Inference of Mating Patterns among Wild
    Snapdragons in a Natural Hybrid Zone in 2012</i>. Institute of Science and Technology
    Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:37">10.15479/AT:ISTA:37</a>.
  short: D. Field, T. Ellis, (2016).
contributor:
- contributor_type: project_manager
  first_name: Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
datarep_id: '37'
date_created: 2018-12-12T12:31:30Z
date_published: 2016-02-19T00:00:00Z
date_updated: 2024-02-21T13:51:14Z
day: '19'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:37
file:
- access_level: open_access
  checksum: 4ae751b1fa4897fa216241f975a57313
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:03:02Z
  date_updated: 2020-07-14T12:47:01Z
  file_id: '5620'
  file_name: IST-2016-37-v1+1_paternity_archive.zip
  file_size: 132808
  relation: main_file
file_date_updated: 2020-07-14T12:47:01Z
has_accepted_license: '1'
keyword:
- paternity assignment
- pedigree
- matting patterns
- assortative mating
- Antirrhinum majus
- frequency-dependent selection
- plant-pollinator interaction
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '1398'
    relation: research_paper
    status: public
status: public
title: Inference of mating patterns among wild snapdragons in a natural hybrid zone
  in 2012
tmp:
  image: /images/cc_0.png
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type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5554'
abstract:
- lang: eng
  text: "The data stored here is used in Murat Tugrul's PhD thesis (Chapter 3), which
    is related to the evolution of bacterial RNA polymerase binding.\r\nMagdalena
    Steinrueck (PhD Student in Calin Guet's group at IST Austria) performed the experiments
    and created the data on de novo promoter evolution. Fabienne Jesse (PhD Student
    in Jon Bollback's group at IST Austria) performed the experiments and created
    the data on lac promoter evolution."
article_processing_charge: No
author:
- first_name: Murat
  full_name: Tugrul, Murat
  id: 37C323C6-F248-11E8-B48F-1D18A9856A87
  last_name: Tugrul
  orcid: 0000-0002-8523-0758
citation:
  ama: Tugrul M. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.
    2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:43">10.15479/AT:ISTA:43</a>
  apa: Tugrul, M. (2016). Experimental Data for Binding Site Evolution of Bacterial
    RNA Polymerase. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:43">https://doi.org/10.15479/AT:ISTA:43</a>
  chicago: Tugrul, Murat. “Experimental Data for Binding Site Evolution of Bacterial
    RNA Polymerase.” Institute of Science and Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:43">https://doi.org/10.15479/AT:ISTA:43</a>.
  ieee: M. Tugrul, “Experimental Data for Binding Site Evolution of Bacterial RNA
    Polymerase.” Institute of Science and Technology Austria, 2016.
  ista: Tugrul M. 2016. Experimental Data for Binding Site Evolution of Bacterial
    RNA Polymerase, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:43">10.15479/AT:ISTA:43</a>.
  mla: Tugrul, Murat. <i>Experimental Data for Binding Site Evolution of Bacterial
    RNA Polymerase</i>. Institute of Science and Technology Austria, 2016, doi:<a
    href="https://doi.org/10.15479/AT:ISTA:43">10.15479/AT:ISTA:43</a>.
  short: M. Tugrul, (2016).
contributor:
- contributor_type: researcher
  first_name: Magdalena
  id: 2C023F40-F248-11E8-B48F-1D18A9856A87
  last_name: Steinrück
- contributor_type: researcher
  first_name: Fabienne
  id: 4C8C26A4-F248-11E8-B48F-1D18A9856A87
  last_name: Jesse
datarep_id: '43'
date_created: 2018-12-12T12:31:30Z
date_published: 2016-05-12T00:00:00Z
date_updated: 2024-02-21T13:50:34Z
day: '12'
department:
- _id: NiBa
- _id: JoBo
doi: 10.15479/AT:ISTA:43
file:
- access_level: open_access
  checksum: 1fc0a10bb7ce110fcb5e1fbe3cf0c4e2
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:03:08Z
  date_updated: 2020-07-14T12:47:01Z
  file_id: '5626'
  file_name: IST-2016-43-v1+1_DATA_MTugrul_PhDThesis_Chapter3.zip
  file_size: 1123495
  relation: main_file
file_date_updated: 2020-07-14T12:47:01Z
has_accepted_license: '1'
keyword:
- RNAP binding
- de novo promoter evolution
- lac promoter
month: '05'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '1131'
    relation: used_in_publication
    status: public
status: public
title: Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase
tmp:
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  legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
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type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5555'
abstract:
- lang: eng
  text: This FIJI script calculates the population average of the migration speed
    as a function of time of all cells from wide field microscopy movies.
article_processing_charge: No
author:
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
citation:
  ama: Hauschild R. Fiji script to determine average speed and direction of migration
    of cells. 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>
  apa: Hauschild, R. (2016). Fiji script to determine average speed and direction
    of migration of cells. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:44">https://doi.org/10.15479/AT:ISTA:44</a>
  chicago: Hauschild, Robert. “Fiji Script to Determine Average Speed and Direction
    of Migration of Cells.” Institute of Science and Technology Austria, 2016. <a
    href="https://doi.org/10.15479/AT:ISTA:44">https://doi.org/10.15479/AT:ISTA:44</a>.
  ieee: R. Hauschild, “Fiji script to determine average speed and direction of migration
    of cells.” Institute of Science and Technology Austria, 2016.
  ista: Hauschild R. 2016. Fiji script to determine average speed and direction of
    migration of cells, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>.
  mla: Hauschild, Robert. <i>Fiji Script to Determine Average Speed and Direction
    of Migration of Cells</i>. Institute of Science and Technology Austria, 2016,
    doi:<a href="https://doi.org/10.15479/AT:ISTA:44">10.15479/AT:ISTA:44</a>.
  short: R. Hauschild, (2016).
datarep_id: '44'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-07-08T00:00:00Z
date_updated: 2024-02-21T13:50:06Z
day: '08'
ddc:
- '570'
department:
- _id: Bio
doi: 10.15479/AT:ISTA:44
file:
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  file_id: '5621'
  file_name: IST-2016-44-v1+1_migrationAnalyzer.zip
  file_size: 20692
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
has_accepted_license: '1'
keyword:
- cell migration
- wide field microscopy
- FIJI
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Fiji script to determine average speed and direction of migration of cells
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...
---
_id: '5556'
abstract:
- lang: eng
  text: "MATLAB code and processed datasets available for reproducing the results
    in: \r\nLukačišin, M.*, Landon, M.*, Jajoo, R*. (2016) Sequence-Specific Thermodynamic
    Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking
    in Yeast.\r\n*equal contributions"
article_processing_charge: No
author:
- first_name: Martin
  full_name: Lukacisin, Martin
  id: 298FFE8C-F248-11E8-B48F-1D18A9856A87
  last_name: Lukacisin
  orcid: 0000-0001-6549-4177
- first_name: Matthieu
  full_name: Landon, Matthieu
  last_name: Landon
- first_name: Rishi
  full_name: Jajoo, Rishi
  last_name: Jajoo
citation:
  ama: Lukacisin M, Landon M, Jajoo R. MATLAB analysis code for “Sequence-Specific
    Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing
    and Backtracking in Yeast.” 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:45">10.15479/AT:ISTA:45</a>
  apa: Lukacisin, M., Landon, M., &#38; Jajoo, R. (2016). MATLAB analysis code for
    “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional
    Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:45">https://doi.org/10.15479/AT:ISTA:45</a>
  chicago: Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “MATLAB Analysis Code
    for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both
    Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and
    Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:45">https://doi.org/10.15479/AT:ISTA:45</a>.
  ieee: M. Lukacisin, M. Landon, and R. Jajoo, “MATLAB analysis code for ‘Sequence-Specific
    Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing
    and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016.
  ista: Lukacisin M, Landon M, Jajoo R. 2016. MATLAB analysis code for ‘Sequence-Specific
    Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing
    and Backtracking in Yeast’, Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:45">10.15479/AT:ISTA:45</a>.
  mla: Lukacisin, Martin, et al. <i>MATLAB Analysis Code for “Sequence-Specific Thermodynamic
    Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking
    in Yeast.”</i> Institute of Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:45">10.15479/AT:ISTA:45</a>.
  short: M. Lukacisin, M. Landon, R. Jajoo, (2016).
datarep_id: '45'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-08-25T00:00:00Z
date_updated: 2024-02-21T13:51:53Z
day: '25'
ddc:
- '571'
department:
- _id: ToBo
doi: 10.15479/AT:ISTA:45
file:
- access_level: open_access
  checksum: ee697f2b1ade4dc14d6ac0334dd832ab
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:02:58Z
  date_updated: 2020-07-14T12:47:02Z
  file_id: '5616'
  file_name: IST-2016-45-v1+1_PaperCode.zip
  file_size: 296722548
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
has_accepted_license: '1'
keyword:
- transcription
- pausing
- backtracking
- polymerase
- RNA
- NET-seq
- nucleosome
- basepairing
license: https://creativecommons.org/licenses/by-sa/4.0/
month: '08'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
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    status: public
status: public
title: MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic
  Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'
tmp:
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type: research_data
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year: '2016'
...
---
_id: '5557'
abstract:
- lang: eng
  text: "Small synthetic discrete tomography problems.\r\nSizes are 32x32, 64z64 and
    256x256.\r\nProjection angles are 2, 4, and 6.\r\nNumber of labels are 3 and 5."
article_processing_charge: No
author:
- first_name: Paul
  full_name: Swoboda, Paul
  id: 446560C6-F248-11E8-B48F-1D18A9856A87
  last_name: Swoboda
citation:
  ama: Swoboda P. Synthetic discrete tomography problems. 2016. doi:<a href="https://doi.org/10.15479/AT:ISTA:46">10.15479/AT:ISTA:46</a>
  apa: Swoboda, P. (2016). Synthetic discrete tomography problems. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:46">https://doi.org/10.15479/AT:ISTA:46</a>
  chicago: Swoboda, Paul. “Synthetic Discrete Tomography Problems.” Institute of Science
    and Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:46">https://doi.org/10.15479/AT:ISTA:46</a>.
  ieee: P. Swoboda, “Synthetic discrete tomography problems.” Institute of Science
    and Technology Austria, 2016.
  ista: Swoboda P. 2016. Synthetic discrete tomography problems, Institute of Science
    and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:46">10.15479/AT:ISTA:46</a>.
  mla: Swoboda, Paul. <i>Synthetic Discrete Tomography Problems</i>. Institute of
    Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:46">10.15479/AT:ISTA:46</a>.
  short: P. Swoboda, (2016).
contributor:
- contributor_type: data_collector
  first_name: Jan
  last_name: Kuske
datarep_id: '46'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-09-20T00:00:00Z
date_updated: 2024-02-21T13:50:21Z
day: '20'
ddc:
- '006'
department:
- _id: VlKo
doi: 10.15479/AT:ISTA:46
file:
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  checksum: aa5a16a0dc888da7186fb8fc45e88439
  content_type: application/zip
  creator: system
  date_created: 2018-12-12T13:05:19Z
  date_updated: 2020-07-14T12:47:02Z
  file_id: '5645'
  file_name: IST-2016-46-v1+1_discrete_tomography_synthetic.zip
  file_size: 36058401
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
has_accepted_license: '1'
keyword:
- discrete tomography
month: '09'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Synthetic discrete tomography problems
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type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '5558'
abstract:
- lang: eng
  text: PhD thesis LaTeX source code
article_processing_charge: No
author:
- first_name: Morten
  full_name: Bojsen-Hansen, Morten
  id: 439F0C8C-F248-11E8-B48F-1D18A9856A87
  last_name: Bojsen-Hansen
  orcid: 0000-0002-4417-3224
citation:
  ama: Bojsen-Hansen M. Tracking, Correcting and Absorbing Water Surface Waves. 2016.
    doi:<a href="https://doi.org/10.15479/AT:ISTA:48">10.15479/AT:ISTA:48</a>
  apa: Bojsen-Hansen, M. (2016). Tracking, Correcting and Absorbing Water Surface
    Waves. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:48">https://doi.org/10.15479/AT:ISTA:48</a>
  chicago: Bojsen-Hansen, Morten. “Tracking, Correcting and Absorbing Water Surface
    Waves.” Institute of Science and Technology Austria, 2016. <a href="https://doi.org/10.15479/AT:ISTA:48">https://doi.org/10.15479/AT:ISTA:48</a>.
  ieee: M. Bojsen-Hansen, “Tracking, Correcting and Absorbing Water Surface Waves.”
    Institute of Science and Technology Austria, 2016.
  ista: Bojsen-Hansen M. 2016. Tracking, Correcting and Absorbing Water Surface Waves,
    Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:48">10.15479/AT:ISTA:48</a>.
  mla: Bojsen-Hansen, Morten. <i>Tracking, Correcting and Absorbing Water Surface
    Waves</i>. Institute of Science and Technology Austria, 2016, doi:<a href="https://doi.org/10.15479/AT:ISTA:48">10.15479/AT:ISTA:48</a>.
  short: M. Bojsen-Hansen, (2016).
datarep_id: '48'
date_created: 2018-12-12T12:31:31Z
date_published: 2016-09-23T00:00:00Z
date_updated: 2024-02-21T13:50:48Z
day: '23'
ddc:
- '004'
department:
- _id: ChWo
doi: 10.15479/AT:ISTA:48
file:
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  date_created: 2018-12-12T13:02:18Z
  date_updated: 2020-07-14T12:47:02Z
  file_id: '5589'
  file_name: IST-2016-48-v1+1_2016_Bojsen-Hansen_TCaAWSW.tar.bz2
  file_size: 55237885
  relation: main_file
file_date_updated: 2020-07-14T12:47:02Z
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month: '09'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
publist_id: '6238'
pubrep_id: '640'
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status: public
title: Tracking, Correcting and Absorbing Water Surface Waves
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...
