---
_id: '1613'
abstract:
- lang: eng
  text: "In the last decade, induced pluripotent stem (iPS) cells have revolutionized
    the utility of human in vitro models of neurological disease. The iPS-derived
    and differentiated cells allow researchers to study the impact of a distinct cell
    type in health and disease as well as performing therapeutic drug screens on a
    human genetic background. In particular, clinical trials for Alzheimer's disease
    (AD) have been often failing. Two of the potential reasons are first, the species
    gap involved in proceeding from initial discoveries in rodent models to human
    studies, and second, an unsatisfying patient stratification, meaning subgrouping
    patients based on the disease severity due to the lack of phenotypic and genetic
    markers. iPS cells overcome this obstacles and will improve our understanding
    of disease subtypes in AD. They allow researchers conducting in depth characterization
    of neural cells from both familial and sporadic AD patients as well as preclinical
    screens on human cells.\r\n\r\nIn this review, we briefly outline the status quo
    of iPS cell research in neurological diseases along with the general advantages
    and pitfalls of these models. We summarize how genome-editing techniques such
    as CRISPR/Cas will allow researchers to reduce the problem of genomic variability
    inherent to human studies, followed by recent iPS cell studies relevant to AD.
    We then focus on current techniques for the differentiation of iPS cells into
    neural cell types that are relevant to AD research. Finally, we discuss how the
    generation of three-dimensional cell culture systems will be important for understanding
    AD phenotypes in a complex cellular milieu, and how both two- and three-dimensional
    iPS cell models can provide platforms for drug discovery and translational studies
    into the treatment of AD."
acknowledgement: This work was supported by NIH grant R01-AG047661 to LHT. The art
  in Fig. 1 was created by Julian Wong.
author:
- first_name: Alison
  full_name: Mungenast, Alison
  last_name: Mungenast
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Li
  full_name: Tsai, Li
  last_name: Tsai
citation:
  ama: Mungenast A, Siegert S, Tsai L. Modeling Alzheimer’s disease with human induced
    pluripotent stem (iPS) cells. <i>Molecular and Cellular Neuroscience</i>. 2016;73:13-31.
    doi:<a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">doi:10.1016/j.mcn.2015.11.010</a>
  apa: Mungenast, A., Siegert, S., &#38; Tsai, L. (2016). Modeling Alzheimer’s disease
    with human induced pluripotent stem (iPS) cells. <i>Molecular and Cellular Neuroscience</i>.
    Academic Press. <a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">https://doi.org/doi:10.1016/j.mcn.2015.11.010</a>
  chicago: Mungenast, Alison, Sandra Siegert, and Li Tsai. “Modeling Alzheimer’s Disease
    with Human Induced Pluripotent Stem (IPS) Cells.” <i>Molecular and Cellular Neuroscience</i>.
    Academic Press, 2016. <a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">https://doi.org/doi:10.1016/j.mcn.2015.11.010</a>.
  ieee: A. Mungenast, S. Siegert, and L. Tsai, “Modeling Alzheimer’s disease with
    human induced pluripotent stem (iPS) cells,” <i>Molecular and Cellular Neuroscience</i>,
    vol. 73. Academic Press, pp. 13–31, 2016.
  ista: Mungenast A, Siegert S, Tsai L. 2016. Modeling Alzheimer’s disease with human
    induced pluripotent stem (iPS) cells. Molecular and Cellular Neuroscience. 73,
    13–31.
  mla: Mungenast, Alison, et al. “Modeling Alzheimer’s Disease with Human Induced
    Pluripotent Stem (IPS) Cells.” <i>Molecular and Cellular Neuroscience</i>, vol.
    73, Academic Press, 2016, pp. 13–31, doi:<a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">doi:10.1016/j.mcn.2015.11.010</a>.
  short: A. Mungenast, S. Siegert, L. Tsai, Molecular and Cellular Neuroscience 73
    (2016) 13–31.
date_created: 2018-12-11T11:53:02Z
date_published: 2016-06-01T00:00:00Z
date_updated: 2021-01-12T06:52:00Z
day: '01'
ddc:
- '616'
doi: doi:10.1016/j.mcn.2015.11.010
extern: '1'
file:
- access_level: open_access
  checksum: 620254114e04d5d6e7f37d15e4b8ace4
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:50Z
  date_updated: 2020-07-14T12:45:07Z
  file_id: '4970'
  file_name: IST-2018-979-v1+1_Mungenast_2015_acceptedManuscript.pdf
  file_size: 632915
  relation: main_file
file_date_updated: 2020-07-14T12:45:07Z
has_accepted_license: '1'
intvolume: '        73'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '06'
oa: 1
oa_version: Submitted Version
page: 13 - 31
publication: Molecular and Cellular Neuroscience
publication_status: published
publisher: Academic Press
publist_id: '5553'
pubrep_id: '979'
quality_controlled: '1'
status: public
title: Modeling Alzheimer's disease with human induced pluripotent stem (iPS) cells
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 73
year: '2016'
...
---
_id: '1306'
abstract:
- lang: eng
  text: 'Resolving patterns of synaptic connectivity in neural circuits currently
    requires serial section electron microscopy. However, complete circuit reconstruction
    is prohibitively slow and may not be necessary for many purposes such as comparing
    neuronal structure and connectivity among multiple animals. Here, we present an
    alternative strategy, targeted reconstruction of specific neuronal types. We used
    viral vectors to deliver peroxidase derivatives, which catalyze production of
    an electron-dense tracer, to genetically identify neurons, and developed a protocol
    that enhances the electron-density of the labeled cells while retaining the quality
    of the ultrastructure. The high contrast of the marked neurons enabled two innovations
    that speed data acquisition: targeted high-resolution reimaging of regions selected
    from rapidly-acquired lower resolution reconstruction, and an unsupervised segmentation
    algorithm. This pipeline reduces imaging and reconstruction times by two orders
    of magnitude, facilitating directed inquiry of circuit motifs.'
acknowledgement: 'This work was supported by NIH grant NS76467 to MM, JL and JRS,
  an HHMI Collaborative Innovation Award to JRS, an IARPA contract #D16PC00002 to
  WJS and by The International Human Frontier Science Program Organization fellowship
  to MJ.'
author:
- first_name: Maximilian A
  full_name: Maximilian Jösch
  id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
  last_name: Jösch
  orcid: 0000-0002-3937-1330
- first_name: David
  full_name: Mankus, David
  last_name: Mankus
- first_name: Masahito
  full_name: Yamagata, Masahito
  last_name: Yamagata
- first_name: Ali
  full_name: Shahbazi, Ali
  last_name: Shahbazi
- first_name: Richard
  full_name: Schalek, Richard L
  last_name: Schalek
- first_name: Adi
  full_name: Suissa-Peleg, Adi
  last_name: Suissa Peleg
- first_name: Markus
  full_name: Meister, Markus
  last_name: Meister
- first_name: Jeff
  full_name: Lichtman, Jeff W
  last_name: Lichtman
- first_name: Walter
  full_name: Scheirer, Walter J
  last_name: Scheirer
- first_name: Joshua
  full_name: Sanes, Joshua R
  last_name: Sanes
citation:
  ama: Jösch MA, Mankus D, Yamagata M, et al. Reconstruction of genetically identified
    neurons imaged by serial-section electron microscopy. <i>eLife</i>. 2016;5(2016JULY).
    doi:<a href="https://doi.org/10.7554/eLife.15015">10.7554/eLife.15015</a>
  apa: Jösch, M. A., Mankus, D., Yamagata, M., Shahbazi, A., Schalek, R., Suissa Peleg,
    A., … Sanes, J. (2016). Reconstruction of genetically identified neurons imaged
    by serial-section electron microscopy. <i>ELife</i>. eLife Sciences Publications.
    <a href="https://doi.org/10.7554/eLife.15015">https://doi.org/10.7554/eLife.15015</a>
  chicago: Jösch, Maximilian A, David Mankus, Masahito Yamagata, Ali Shahbazi, Richard
    Schalek, Adi Suissa Peleg, Markus Meister, Jeff Lichtman, Walter Scheirer, and
    Joshua Sanes. “Reconstruction of Genetically Identified Neurons Imaged by Serial-Section
    Electron Microscopy.” <i>ELife</i>. eLife Sciences Publications, 2016. <a href="https://doi.org/10.7554/eLife.15015">https://doi.org/10.7554/eLife.15015</a>.
  ieee: M. A. Jösch <i>et al.</i>, “Reconstruction of genetically identified neurons
    imaged by serial-section electron microscopy,” <i>eLife</i>, vol. 5, no. 2016JULY.
    eLife Sciences Publications, 2016.
  ista: Jösch MA, Mankus D, Yamagata M, Shahbazi A, Schalek R, Suissa Peleg A, Meister
    M, Lichtman J, Scheirer W, Sanes J. 2016. Reconstruction of genetically identified
    neurons imaged by serial-section electron microscopy. eLife. 5(2016JULY).
  mla: Jösch, Maximilian A., et al. “Reconstruction of Genetically Identified Neurons
    Imaged by Serial-Section Electron Microscopy.” <i>ELife</i>, vol. 5, no. 2016JULY,
    eLife Sciences Publications, 2016, doi:<a href="https://doi.org/10.7554/eLife.15015">10.7554/eLife.15015</a>.
  short: M.A. Jösch, D. Mankus, M. Yamagata, A. Shahbazi, R. Schalek, A. Suissa Peleg,
    M. Meister, J. Lichtman, W. Scheirer, J. Sanes, ELife 5 (2016).
date_created: 2018-12-11T11:51:16Z
date_published: 2016-07-07T00:00:00Z
date_updated: 2021-01-12T06:49:46Z
day: '07'
doi: 10.7554/eLife.15015
extern: 1
intvolume: '         5'
issue: 2016JULY
license: https://creativecommons.org/licenses/by/4.0/
month: '07'
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '5965'
quality_controlled: 0
status: public
title: Reconstruction of genetically identified neurons imaged by serial-section electron
  microscopy
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 5
year: '2016'
...
---
_id: '1315'
abstract:
- lang: eng
  text: We prove optimal second order convergence of a modified lowest-order Brezzi-Douglas-Marini
    (BDM1) mixed finite element scheme for advection-diffusion problems in divergence
    form. If advection is present, it is known that the total flux is approximated
    only with first-order accuracy by the classical BDM1 mixed method, which is suboptimal
    since the same order of convergence is obtained if the computationally less expensive
    Raviart-Thomas (RT0) element is used. The modification that was first proposed
    by Brunner et al. [Adv. Water Res., 35 (2012),pp. 163-171] is based on the hybrid
    problem formulation and consists in using the Lagrange multipliers for the discretization
    of the advective term instead of the cellwise constant approximation of the scalar
    unknown.
author:
- first_name: Fabian
  full_name: Brunner, Fabian
  last_name: Brunner
- first_name: Julian L
  full_name: Julian Fischer
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Peter
  full_name: Knabner, Peter
  last_name: Knabner
citation:
  ama: Brunner F, Fischer JL, Knabner P. Analysis of a modified second-order mixed
    hybrid BDM1 finite element method for transport problems in divergence form. <i>SIAM
    Journal on Numerical Analysis</i>. 2016;54(4):2359-2378. doi:<a href="https://doi.org/10.1137/15M1035379">10.1137/15M1035379</a>
  apa: Brunner, F., Fischer, J. L., &#38; Knabner, P. (2016). Analysis of a modified
    second-order mixed hybrid BDM1 finite element method for transport problems in
    divergence form. <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial
    and Applied Mathematics . <a href="https://doi.org/10.1137/15M1035379">https://doi.org/10.1137/15M1035379</a>
  chicago: Brunner, Fabian, Julian L Fischer, and Peter Knabner. “Analysis of a Modified
    Second-Order Mixed Hybrid BDM1 Finite Element Method for Transport Problems in
    Divergence Form.” <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial
    and Applied Mathematics , 2016. <a href="https://doi.org/10.1137/15M1035379">https://doi.org/10.1137/15M1035379</a>.
  ieee: F. Brunner, J. L. Fischer, and P. Knabner, “Analysis of a modified second-order
    mixed hybrid BDM1 finite element method for transport problems in divergence form,”
    <i>SIAM Journal on Numerical Analysis</i>, vol. 54, no. 4. Society for Industrial
    and Applied Mathematics , pp. 2359–2378, 2016.
  ista: Brunner F, Fischer JL, Knabner P. 2016. Analysis of a modified second-order
    mixed hybrid BDM1 finite element method for transport problems in divergence form.
    SIAM Journal on Numerical Analysis. 54(4), 2359–2378.
  mla: Brunner, Fabian, et al. “Analysis of a Modified Second-Order Mixed Hybrid BDM1
    Finite Element Method for Transport Problems in Divergence Form.” <i>SIAM Journal
    on Numerical Analysis</i>, vol. 54, no. 4, Society for Industrial and Applied
    Mathematics , 2016, pp. 2359–78, doi:<a href="https://doi.org/10.1137/15M1035379">10.1137/15M1035379</a>.
  short: F. Brunner, J.L. Fischer, P. Knabner, SIAM Journal on Numerical Analysis
    54 (2016) 2359–2378.
date_created: 2018-12-11T11:51:19Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2021-01-12T06:49:49Z
day: '01'
doi: 10.1137/15M1035379
extern: 1
intvolume: '        54'
issue: '4'
month: '01'
page: 2359 - 2378
publication: SIAM Journal on Numerical Analysis
publication_status: published
publisher: 'Society for Industrial and Applied Mathematics '
publist_id: '5954'
quality_controlled: 0
status: public
title: Analysis of a modified second-order mixed hybrid BDM1 finite element method
  for transport problems in divergence form
type: journal_article
volume: 54
year: '2016'
...
---
_id: '1317'
abstract:
- lang: eng
  text: We analyze the behaviour of free boundaries in thin-film flow in the regime
    of strong slippage n∈[1,2) and in the regime of very weak slippage n∈,3) qualitatively
    and quantitatively. In the regime of strong slippage, we construct initial data
    which are bounded from above by the steady state but for which nevertheless instantaneous
    forward motion of the free boundary occurs. This shows that the initial behaviour
    of the free boundary is not determined just by the growth of the initial data
    at the free boundary. Note that this is a new phenomenon for degenerate parabolic
    equations which is specific for higher-order equations. Furthermore, this result
    resolves a controversy in the literature over optimality of sufficient conditions
    for the occurrence of a waiting time phenomenon. In contrast, in the regime of
    very weak slippage we derive lower bounds on free boundary propagation which are
    optimal in the sense that they coincide up to a constant factor with the known
    upper bounds. In particular, in this regime the growth of the initial data at
    the free boundary fully determines the initial behaviour of the interface.
acknowledgement: This research was partly supported by the Lithuanian–Swiss cooperation
  program under the project agreement No. CH-SMM-01/0.
author:
- first_name: Julian L
  full_name: Julian Fischer
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
citation:
  ama: 'Fischer JL. Behaviour of free boundaries in thin-film flow: The regime of
    strong slippage and the regime of very weak slippage. <i>Annales de l’Institut
    Henri Poincare (C) Non Linear Analysis</i>. 2016;33(5):1301-1327. doi:<a href="https://doi.org/10.1016/j.anihpc.2015.05.001">10.1016/j.anihpc.2015.05.001</a>'
  apa: 'Fischer, J. L. (2016). Behaviour of free boundaries in thin-film flow: The
    regime of strong slippage and the regime of very weak slippage. <i>Annales de
    l’Institut Henri Poincare (C) Non Linear Analysis</i>. Elsevier. <a href="https://doi.org/10.1016/j.anihpc.2015.05.001">https://doi.org/10.1016/j.anihpc.2015.05.001</a>'
  chicago: 'Fischer, Julian L. “Behaviour of Free Boundaries in Thin-Film Flow: The
    Regime of Strong Slippage and the Regime of Very Weak Slippage.” <i>Annales de
    l’Institut Henri Poincare (C) Non Linear Analysis</i>. Elsevier, 2016. <a href="https://doi.org/10.1016/j.anihpc.2015.05.001">https://doi.org/10.1016/j.anihpc.2015.05.001</a>.'
  ieee: 'J. L. Fischer, “Behaviour of free boundaries in thin-film flow: The regime
    of strong slippage and the regime of very weak slippage,” <i>Annales de l’Institut
    Henri Poincare (C) Non Linear Analysis</i>, vol. 33, no. 5. Elsevier, pp. 1301–1327,
    2016.'
  ista: 'Fischer JL. 2016. Behaviour of free boundaries in thin-film flow: The regime
    of strong slippage and the regime of very weak slippage. Annales de l’Institut
    Henri Poincare (C) Non Linear Analysis. 33(5), 1301–1327.'
  mla: 'Fischer, Julian L. “Behaviour of Free Boundaries in Thin-Film Flow: The Regime
    of Strong Slippage and the Regime of Very Weak Slippage.” <i>Annales de l’Institut
    Henri Poincare (C) Non Linear Analysis</i>, vol. 33, no. 5, Elsevier, 2016, pp.
    1301–27, doi:<a href="https://doi.org/10.1016/j.anihpc.2015.05.001">10.1016/j.anihpc.2015.05.001</a>.'
  short: J.L. Fischer, Annales de l’Institut Henri Poincare (C) Non Linear Analysis
    33 (2016) 1301–1327.
date_created: 2018-12-11T11:51:20Z
date_published: 2016-09-01T00:00:00Z
date_updated: 2021-01-12T06:49:50Z
day: '01'
doi: 10.1016/j.anihpc.2015.05.001
extern: 1
intvolume: '        33'
issue: '5'
month: '09'
page: 1301 - 1327
publication: Annales de l'Institut Henri Poincare (C) Non Linear Analysis
publication_status: published
publisher: Elsevier
publist_id: '5952'
quality_controlled: 0
status: public
title: 'Behaviour of free boundaries in thin-film flow: The regime of strong slippage
  and the regime of very weak slippage'
type: journal_article
volume: 33
year: '2016'
...
---
_id: '1318'
abstract:
- lang: eng
  text: 'We develop a large-scale regularity theory of higher order for divergence-form
    elliptic equations with heterogeneous coefficient fields a in the context of stochastic
    homogenization. The large-scale regularity of a-harmonic functions is encoded
    by Liouville principles: The space of a-harmonic functions that grow at most like
    a polynomial of degree k has the same dimension as in the constant-coefficient
    case. This result can be seen as the qualitative side of a large-scale Ck,α-regularity
    theory, which in the present work is developed in the form of a corresponding
    Ck,α-“excess decay” estimate: For a given a-harmonic function u on a ball BR,
    its energy distance on some ball Br to the above space of a-harmonic functions
    that grow at most like a polynomial of degree k has the natural decay in the radius
    r above some minimal radius r0. Though motivated by stochastic homogenization,
    the contribution of this paper is of purely deterministic nature: We work under
    the assumption that for the given realization a of the coefficient field, the
    couple (φ, σ) of scalar and vector potentials of the harmonic coordinates, where
    φ is the usual corrector, grows sublinearly in a mildly quantified way. We then
    construct “kth-order correctors” and thereby the space of a-harmonic functions
    that grow at most like a polynomial of degree k, establish the above excess decay,
    and then the corresponding Liouville principle.'
author:
- first_name: Julian L
  full_name: Julian Fischer
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Felix
  full_name: Otto, Felix
  last_name: Otto
citation:
  ama: Fischer JL, Otto F. A higher-order large scale regularity theory for random
    elliptic operators. <i>Communications in Partial Differential Equations</i>. 2016;41(7):1108-1148.
    doi:<a href="https://doi.org/10.1080/03605302.2016.1179318">10.1080/03605302.2016.1179318</a>
  apa: Fischer, J. L., &#38; Otto, F. (2016). A higher-order large scale regularity
    theory for random elliptic operators. <i>Communications in Partial Differential
    Equations</i>. Taylor &#38; Francis. <a href="https://doi.org/10.1080/03605302.2016.1179318">https://doi.org/10.1080/03605302.2016.1179318</a>
  chicago: Fischer, Julian L, and Felix Otto. “A Higher-Order Large Scale Regularity
    Theory for Random Elliptic Operators.” <i>Communications in Partial Differential
    Equations</i>. Taylor &#38; Francis, 2016. <a href="https://doi.org/10.1080/03605302.2016.1179318">https://doi.org/10.1080/03605302.2016.1179318</a>.
  ieee: J. L. Fischer and F. Otto, “A higher-order large scale regularity theory for
    random elliptic operators,” <i>Communications in Partial Differential Equations</i>,
    vol. 41, no. 7. Taylor &#38; Francis, pp. 1108–1148, 2016.
  ista: Fischer JL, Otto F. 2016. A higher-order large scale regularity theory for
    random elliptic operators. Communications in Partial Differential Equations. 41(7),
    1108–1148.
  mla: Fischer, Julian L., and Felix Otto. “A Higher-Order Large Scale Regularity
    Theory for Random Elliptic Operators.” <i>Communications in Partial Differential
    Equations</i>, vol. 41, no. 7, Taylor &#38; Francis, 2016, pp. 1108–48, doi:<a
    href="https://doi.org/10.1080/03605302.2016.1179318">10.1080/03605302.2016.1179318</a>.
  short: J.L. Fischer, F. Otto, Communications in Partial Differential Equations 41
    (2016) 1108–1148.
date_created: 2018-12-11T11:51:20Z
date_published: 2016-07-02T00:00:00Z
date_updated: 2021-01-12T06:49:50Z
day: '02'
doi: 10.1080/03605302.2016.1179318
extern: 1
intvolume: '        41'
issue: '7'
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1503.07578
month: '07'
oa: 1
page: 1108 - 1148
publication: Communications in Partial Differential Equations
publication_status: published
publisher: Taylor & Francis
publist_id: '5953'
quality_controlled: 0
status: public
title: A higher-order large scale regularity theory for random elliptic operators
type: journal_article
volume: 41
year: '2016'
...
---
_id: '1319'
abstract:
- lang: eng
  text: We present a novel optimization-based algorithm for the design and fabrication
    of customized, deformable input devices, capable of continuously sensing their
    deformation. We propose to embed piezoresistive sensing elements into flexible
    3D printed objects. These sensing elements are then utilized to recover rich and
    natural user interactions at runtime. Designing such objects is a challenging
    and hard problem if attempted manually for all but the simplest geometries and
    deformations. Our method simultaneously optimizes the internal routing of the
    sensing elements and computes a mapping from low-level sensor readings to user-specified
    outputs in order to minimize reconstruction error. We demonstrate the power and
    flexibility of the approach by designing and fabricating a set of flexible input
    devices. Our results indicate that the optimization-based design greatly outperforms
    manual routings in terms of reconstruction accuracy and thus interaction fidelity.
acknowledgement: "We  thank  Damian  Karrer,   Rocco  Ghielmini  and  Jemin\r\nHwangbo
  for their help in our initial explorations. We would\r\nlike to thank Christian
  Schumacher for creating the video and\r\nC\r\n ́\r\necile Edwards-Rietmann for providing
  the voiceover. Mau-\r\nrizio Nitti helped us in designing our 3D characters. We
  thank\r\nChiara Daraio for insightful discussions on material proper-\r\nties and
  3D printing.   We also thank the CHI reviewers for\r\ntheir feedback and guidance.
  Fabrizio Pece was supported by\r\nan ETH/Marie Curie fellowship (FEL-3314-1)."
author:
- first_name: Moritz
  full_name: Bächer, Moritz
  last_name: Bächer
- first_name: Benjamin
  full_name: Hepp, Benjamin
  last_name: Hepp
- first_name: Fabrizio
  full_name: Pece, Fabrizio
  last_name: Pece
- first_name: Paul
  full_name: Kry, Paul
  last_name: Kry
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Bernhard
  full_name: Thomaszewski, Bernhard
  last_name: Thomaszewski
- first_name: Otmar
  full_name: Hilliges, Otmar
  last_name: Hilliges
citation:
  ama: 'Bächer M, Hepp B, Pece F, et al. DefSense: computational design of customized
    deformable input devices. In: ACM; 2016:3806-3816. doi:<a href="https://doi.org/10.1145/2858036.2858354">10.1145/2858036.2858354</a>'
  apa: 'Bächer, M., Hepp, B., Pece, F., Kry, P., Bickel, B., Thomaszewski, B., &#38;
    Hilliges, O. (2016). DefSense: computational design of customized deformable input
    devices (pp. 3806–3816). Presented at the CHI: Conference on Human Factors in
    Computing Systems, San Jose, California, USA: ACM. <a href="https://doi.org/10.1145/2858036.2858354">https://doi.org/10.1145/2858036.2858354</a>'
  chicago: 'Bächer, Moritz, Benjamin Hepp, Fabrizio Pece, Paul Kry, Bernd Bickel,
    Bernhard Thomaszewski, and Otmar Hilliges. “DefSense: Computational Design of
    Customized Deformable Input Devices,” 3806–16. ACM, 2016. <a href="https://doi.org/10.1145/2858036.2858354">https://doi.org/10.1145/2858036.2858354</a>.'
  ieee: 'M. Bächer <i>et al.</i>, “DefSense: computational design of customized deformable
    input devices,” presented at the CHI: Conference on Human Factors in Computing
    Systems, San Jose, California, USA, 2016, pp. 3806–3816.'
  ista: 'Bächer M, Hepp B, Pece F, Kry P, Bickel B, Thomaszewski B, Hilliges O. 2016.
    DefSense: computational design of customized deformable input devices. CHI: Conference
    on Human Factors in Computing Systems, 3806–3816.'
  mla: 'Bächer, Moritz, et al. <i>DefSense: Computational Design of Customized Deformable
    Input Devices</i>. ACM, 2016, pp. 3806–16, doi:<a href="https://doi.org/10.1145/2858036.2858354">10.1145/2858036.2858354</a>.'
  short: M. Bächer, B. Hepp, F. Pece, P. Kry, B. Bickel, B. Thomaszewski, O. Hilliges,
    in:, ACM, 2016, pp. 3806–3816.
conference:
  end_date: 2016-05-12
  location: San Jose, California, USA
  name: 'CHI: Conference on Human Factors in Computing Systems'
  start_date: 2016-05-07
date_created: 2018-12-11T11:51:21Z
date_published: 2016-05-07T00:00:00Z
date_updated: 2021-01-12T06:49:51Z
day: '07'
department:
- _id: BeBi
doi: 10.1145/2858036.2858354
language:
- iso: eng
month: '05'
oa_version: None
page: 3806 - 3816
publication_status: published
publisher: ACM
publist_id: '5951'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'DefSense: computational design of customized deformable input devices'
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '1320'
abstract:
- lang: eng
  text: 'In recent years, several biomolecular systems have been shown to be scale-invariant
    (SI), i.e. to show the same output dynamics when exposed to geometrically scaled
    input signals (u → pu, p &gt; 0) after pre-adaptation to accordingly scaled constant
    inputs. In this article, we show that SI systems-as well as systems invariant
    with respect to other input transformations-can realize nonlinear differential
    operators: when excited by inputs obeying functional forms characteristic for
    a given class of invariant systems, the systems'' outputs converge to constant
    values directly quantifying the speed of the input.'
acknowledgement: The research leading to these results has received funding from the
  People Programme (Marie Curie Actions) of the European Union's Seventh Framework
  Programme (FP7/2007-2013) under REA grant agreement n° [291734]. Work supported
  in part by grants AFOSR FA9550-14-1-0060 and NIH 1R01GM100473.
article_number: '7526722'
author:
- first_name: Moritz
  full_name: Lang, Moritz
  id: 29E0800A-F248-11E8-B48F-1D18A9856A87
  last_name: Lang
- first_name: Eduardo
  full_name: Sontag, Eduardo
  last_name: Sontag
citation:
  ama: 'Lang M, Sontag E. Scale-invariant systems realize nonlinear differential operators.
    In: Vol 2016-July. IEEE; 2016. doi:<a href="https://doi.org/10.1109/ACC.2016.7526722">10.1109/ACC.2016.7526722</a>'
  apa: 'Lang, M., &#38; Sontag, E. (2016). Scale-invariant systems realize nonlinear
    differential operators (Vol. 2016–July). Presented at the ACC: American Control
    Conference, Boston, MA, USA: IEEE. <a href="https://doi.org/10.1109/ACC.2016.7526722">https://doi.org/10.1109/ACC.2016.7526722</a>'
  chicago: Lang, Moritz, and Eduardo Sontag. “Scale-Invariant Systems Realize Nonlinear
    Differential Operators,” Vol. 2016–July. IEEE, 2016. <a href="https://doi.org/10.1109/ACC.2016.7526722">https://doi.org/10.1109/ACC.2016.7526722</a>.
  ieee: 'M. Lang and E. Sontag, “Scale-invariant systems realize nonlinear differential
    operators,” presented at the ACC: American Control Conference, Boston, MA, USA,
    2016, vol. 2016–July.'
  ista: 'Lang M, Sontag E. 2016. Scale-invariant systems realize nonlinear differential
    operators. ACC: American Control Conference vol. 2016–July, 7526722.'
  mla: Lang, Moritz, and Eduardo Sontag. <i>Scale-Invariant Systems Realize Nonlinear
    Differential Operators</i>. Vol. 2016–July, 7526722, IEEE, 2016, doi:<a href="https://doi.org/10.1109/ACC.2016.7526722">10.1109/ACC.2016.7526722</a>.
  short: M. Lang, E. Sontag, in:, IEEE, 2016.
conference:
  end_date: 2016-07-08
  location: Boston, MA, USA
  name: 'ACC: American Control Conference'
  start_date: 2016-07-06
date_created: 2018-12-11T11:51:21Z
date_published: 2016-07-28T00:00:00Z
date_updated: 2021-01-12T06:49:51Z
day: '28'
ddc:
- '003'
- '621'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1109/ACC.2016.7526722
ec_funded: 1
file:
- access_level: local
  checksum: 7219432b43defc62a0d45f48d4ce6a19
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:17Z
  date_updated: 2020-07-14T12:44:43Z
  file_id: '5203'
  file_name: IST-2017-810-v1+1_root.pdf
  file_size: 539166
  relation: main_file
file_date_updated: 2020-07-14T12:44:43Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: IEEE
publist_id: '5950'
pubrep_id: '810'
quality_controlled: '1'
scopus_import: 1
status: public
title: Scale-invariant systems realize nonlinear differential operators
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2016-July
year: '2016'
...
---
_id: '1321'
abstract:
- lang: eng
  text: Most migrating cells extrude their front by the force of actin polymerization.
    Polymerization requires an initial nucleation step, which is mediated by factors
    establishing either parallel filaments in the case of filopodia or branched filaments
    that form the branched lamellipodial network. Branches are considered essential
    for regular cell motility and are initiated by the Arp2/3 complex, which in turn
    is activated by nucleation-promoting factors of the WASP and WAVE families. Here
    we employed rapid amoeboid crawling leukocytes and found that deletion of the
    WAVE complex eliminated actin branching and thus lamellipodia formation. The cells
    were left with parallel filaments at the leading edge, which translated, depending
    on the differentiation status of the cell, into a unipolar pointed cell shape
    or cells with multiple filopodia. Remarkably, unipolar cells migrated with increased
    speed and enormous directional persistence, while they were unable to turn towards
    chemotactic gradients. Cells with multiple filopodia retained chemotactic activity
    but their migration was progressively impaired with increasing geometrical complexity
    of the extracellular environment. These findings establish that diversified leading
    edge protrusions serve as explorative structures while they slow down actual locomotion.
acknowledged_ssus:
- _id: SSU
acknowledgement: "This work was supported by the German Research Foundation (DFG)
  Priority Program SP 1464 to T.E.B.S. and M.S., and European Research Council (ERC
  GA 281556) and Human Frontiers Program grants to M.S.\r\nService Units of IST Austria
  for excellent technical support."
article_processing_charge: No
article_type: original
author:
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: Alexander
  full_name: Eichner, Alexander
  id: 4DFA52AE-F248-11E8-B48F-1D18A9856A87
  last_name: Eichner
- first_name: Jan
  full_name: Müller, Jan
  id: AD07FDB4-0F61-11EA-8158-C4CC64CEAA8D
  last_name: Müller
- first_name: Anne
  full_name: Reversat, Anne
  id: 35B76592-F248-11E8-B48F-1D18A9856A87
  last_name: Reversat
  orcid: 0000-0003-0666-8928
- first_name: Markus
  full_name: Brown, Markus
  id: 3DAB9AFC-F248-11E8-B48F-1D18A9856A87
  last_name: Brown
- first_name: Jan
  full_name: Schwarz, Jan
  id: 346C1EC6-F248-11E8-B48F-1D18A9856A87
  last_name: Schwarz
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: David
  full_name: De Gorter, David
  last_name: De Gorter
- first_name: Florian
  full_name: Schur, Florian
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
- first_name: Jonathan
  full_name: Bayerl, Jonathan
  last_name: Bayerl
- first_name: Ingrid
  full_name: De Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: De Vries
- first_name: Stefan
  full_name: Wieser, Stefan
  id: 355AA5A0-F248-11E8-B48F-1D18A9856A87
  last_name: Wieser
  orcid: 0000-0002-2670-2217
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Frank
  full_name: Lai, Frank
  last_name: Lai
- first_name: Markus
  full_name: Moser, Markus
  last_name: Moser
- first_name: Dontscho
  full_name: Kerjaschki, Dontscho
  last_name: Kerjaschki
- first_name: Klemens
  full_name: Rottner, Klemens
  last_name: Rottner
- first_name: Victor
  full_name: Small, Victor
  last_name: Small
- first_name: Theresia
  full_name: Stradal, Theresia
  last_name: Stradal
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Leithner AF, Eichner A, Müller J, et al. Diversified actin protrusions promote
    environmental exploration but are dispensable for locomotion of leukocytes. <i>Nature
    Cell Biology</i>. 2016;18:1253-1259. doi:<a href="https://doi.org/10.1038/ncb3426">10.1038/ncb3426</a>
  apa: Leithner, A. F., Eichner, A., Müller, J., Reversat, A., Brown, M., Schwarz,
    J., … Sixt, M. K. (2016). Diversified actin protrusions promote environmental
    exploration but are dispensable for locomotion of leukocytes. <i>Nature Cell Biology</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/ncb3426">https://doi.org/10.1038/ncb3426</a>
  chicago: Leithner, Alexander F, Alexander Eichner, Jan Müller, Anne Reversat, Markus
    Brown, Jan Schwarz, Jack Merrin, et al. “Diversified Actin Protrusions Promote
    Environmental Exploration but Are Dispensable for Locomotion of Leukocytes.” <i>Nature
    Cell Biology</i>. Nature Publishing Group, 2016. <a href="https://doi.org/10.1038/ncb3426">https://doi.org/10.1038/ncb3426</a>.
  ieee: A. F. Leithner <i>et al.</i>, “Diversified actin protrusions promote environmental
    exploration but are dispensable for locomotion of leukocytes,” <i>Nature Cell
    Biology</i>, vol. 18. Nature Publishing Group, pp. 1253–1259, 2016.
  ista: Leithner AF, Eichner A, Müller J, Reversat A, Brown M, Schwarz J, Merrin J,
    De Gorter D, Schur FK, Bayerl J, de Vries I, Wieser S, Hauschild R, Lai F, Moser
    M, Kerjaschki D, Rottner K, Small V, Stradal T, Sixt MK. 2016. Diversified actin
    protrusions promote environmental exploration but are dispensable for locomotion
    of leukocytes. Nature Cell Biology. 18, 1253–1259.
  mla: Leithner, Alexander F., et al. “Diversified Actin Protrusions Promote Environmental
    Exploration but Are Dispensable for Locomotion of Leukocytes.” <i>Nature Cell
    Biology</i>, vol. 18, Nature Publishing Group, 2016, pp. 1253–59, doi:<a href="https://doi.org/10.1038/ncb3426">10.1038/ncb3426</a>.
  short: A.F. Leithner, A. Eichner, J. Müller, A. Reversat, M. Brown, J. Schwarz,
    J. Merrin, D. De Gorter, F.K. Schur, J. Bayerl, I. de Vries, S. Wieser, R. Hauschild,
    F. Lai, M. Moser, D. Kerjaschki, K. Rottner, V. Small, T. Stradal, M.K. Sixt,
    Nature Cell Biology 18 (2016) 1253–1259.
date_created: 2018-12-11T11:51:21Z
date_published: 2016-10-24T00:00:00Z
date_updated: 2024-03-25T23:30:09Z
day: '24'
ddc:
- '570'
department:
- _id: MiSi
- _id: NanoFab
- _id: Bio
doi: 10.1038/ncb3426
ec_funded: 1
file:
- access_level: open_access
  checksum: e1411cb7c99a2d9089c178a6abef25e7
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-14T16:33:46Z
  date_updated: 2020-07-14T12:44:43Z
  file_id: '7844'
  file_name: 2018_NatureCell_Leithner.pdf
  file_size: 4433280
  relation: main_file
file_date_updated: 2020-07-14T12:44:43Z
has_accepted_license: '1'
intvolume: '        18'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '10'
oa: 1
oa_version: Submitted Version
page: 1253 - 1259
project:
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281556'
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
    (EU)
publication: Nature Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '5949'
quality_controlled: '1'
related_material:
  record:
  - id: '323'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Diversified actin protrusions promote environmental exploration but are dispensable
  for locomotion of leukocytes
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2016'
...
---
_id: '1322'
abstract:
- lang: eng
  text: Direct reciprocity is a major mechanism for the evolution of cooperation.
    Several classical studies have suggested that humans should quickly learn to adopt
    reciprocal strategies to establish mutual cooperation in repeated interactions.
    On the other hand, the recently discovered theory of ZD strategies has found that
    subjects who use extortionate strategies are able to exploit and subdue cooperators.
    Although such extortioners have been predicted to succeed in any population of
    adaptive opponents, theoretical follow-up studies questioned whether extortion
    can evolve in reality. However, most of these studies presumed that individuals
    have similar strategic possibilities and comparable outside options, whereas asymmetries
    are ubiquitous in real world applications. Here we show with a model and an economic
    experiment that extortionate strategies readily emerge once subjects differ in
    their strategic power. Our experiment combines a repeated social dilemma with
    asymmetric partner choice. In our main treatment there is one randomly chosen
    group member who is unilaterally allowed to exchange one of the other group members
    after every ten rounds of the social dilemma. We find that this asymmetric replacement
    opportunity generally promotes cooperation, but often the resulting payoff distribution
    reflects the underlying power structure. Almost half of the subjects in a better
    strategic position turn into extortioners, who quickly proceed to exploit their
    peers. By adapting their cooperation probabilities consistent with ZD theory,
    extortioners force their co-players to cooperate without being similarly cooperative
    themselves. Comparison to non-extortionate players under the same conditions indicates
    a substantial net gain to extortion. Our results thus highlight how power asymmetries
    can endanger mutually beneficial interactions, and transform them into exploitative
    relationships. In particular, our results indicate that the extortionate strategies
    predicted from ZD theory could play a more prominent role in our daily interactions
    than previously thought.
acknowledgement: 'CH was funded by the Schrödinger program of the Austrian Science
  Fund (FWF) J3475. '
article_number: e0163867
author:
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Kristin
  full_name: Hagel, Kristin
  last_name: Hagel
- first_name: Manfred
  full_name: Milinski, Manfred
  last_name: Milinski
citation:
  ama: Hilbe C, Hagel K, Milinski M. Asymmetric power boosts extortion in an economic
    experiment. <i>PLoS One</i>. 2016;11(10). doi:<a href="https://doi.org/10.1371/journal.pone.0163867">10.1371/journal.pone.0163867</a>
  apa: Hilbe, C., Hagel, K., &#38; Milinski, M. (2016). Asymmetric power boosts extortion
    in an economic experiment. <i>PLoS One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0163867">https://doi.org/10.1371/journal.pone.0163867</a>
  chicago: Hilbe, Christian, Kristin Hagel, and Manfred Milinski. “Asymmetric Power
    Boosts Extortion in an Economic Experiment.” <i>PLoS One</i>. Public Library of
    Science, 2016. <a href="https://doi.org/10.1371/journal.pone.0163867">https://doi.org/10.1371/journal.pone.0163867</a>.
  ieee: C. Hilbe, K. Hagel, and M. Milinski, “Asymmetric power boosts extortion in
    an economic experiment,” <i>PLoS One</i>, vol. 11, no. 10. Public Library of Science,
    2016.
  ista: Hilbe C, Hagel K, Milinski M. 2016. Asymmetric power boosts extortion in an
    economic experiment. PLoS One. 11(10), e0163867.
  mla: Hilbe, Christian, et al. “Asymmetric Power Boosts Extortion in an Economic
    Experiment.” <i>PLoS One</i>, vol. 11, no. 10, e0163867, Public Library of Science,
    2016, doi:<a href="https://doi.org/10.1371/journal.pone.0163867">10.1371/journal.pone.0163867</a>.
  short: C. Hilbe, K. Hagel, M. Milinski, PLoS One 11 (2016).
date_created: 2018-12-11T11:51:22Z
date_published: 2016-10-04T00:00:00Z
date_updated: 2023-02-23T14:11:27Z
day: '04'
ddc:
- '004'
- '006'
department:
- _id: KrCh
doi: 10.1371/journal.pone.0163867
file:
- access_level: open_access
  checksum: 6b33e394003dfe8b4ca6be1858aaa8e3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:08Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '4668'
  file_name: IST-2016-716-v1+1_journal.pone.0163867.PDF
  file_size: 2077905
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '        11'
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '5948'
pubrep_id: '716'
quality_controlled: '1'
related_material:
  record:
  - id: '9867'
    relation: research_data
    status: public
  - id: '9868'
    relation: research_data
    status: public
scopus_import: 1
status: public
title: Asymmetric power boosts extortion in an economic experiment
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2016'
...
---
_id: '1323'
abstract:
- lang: eng
  text: Mossy fiber synapses on CA3 pyramidal cells are 'conditional detonators' that
    reliably discharge postsynaptic targets. The 'conditional' nature implies that
    burst activity in dentate gyrus granule cells is required for detonation. Whether
    single unitary excitatory postsynaptic potentials (EPSPs) trigger spikes in CA3
    neurons remains unknown. Mossy fiber synapses exhibit both pronounced short-term
    facilitation and uniquely large post-tetanic potentiation (PTP). We tested whether
    PTP could convert mossy fiber synapses from subdetonator into detonator mode,
    using a recently developed method to selectively and noninvasively stimulate individual
    presynaptic terminals in rat brain slices. Unitary EPSPs failed to initiate a
    spike in CA3 neurons under control conditions, but reliably discharged them after
    induction of presynaptic short-term plasticity. Remarkably, PTP switched mossy
    fiber synapses into full detonators for tens of seconds. Plasticity-dependent
    detonation may be critical for efficient coding, storage, and recall of information
    in the granule cell–CA3 cell network.
acknowledged_ssus:
- _id: M-Shop
- _id: PreCl
article_number: e17977
author:
- first_name: Nicholas
  full_name: Vyleta, Nicholas
  id: 36C4978E-F248-11E8-B48F-1D18A9856A87
  last_name: Vyleta
- first_name: Carolina
  full_name: Borges Merjane, Carolina
  id: 4305C450-F248-11E8-B48F-1D18A9856A87
  last_name: Borges Merjane
  orcid: 0000-0003-0005-401X
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Vyleta N, Borges Merjane C, Jonas PM. Plasticity-dependent, full detonation
    at hippocampal mossy fiber–CA3 pyramidal neuron synapses. <i>eLife</i>. 2016;5.
    doi:<a href="https://doi.org/10.7554/eLife.17977">10.7554/eLife.17977</a>
  apa: Vyleta, N., Borges Merjane, C., &#38; Jonas, P. M. (2016). Plasticity-dependent,
    full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.17977">https://doi.org/10.7554/eLife.17977</a>
  chicago: Vyleta, Nicholas, Carolina Borges Merjane, and Peter M Jonas. “Plasticity-Dependent,
    Full Detonation at Hippocampal Mossy Fiber–CA3 Pyramidal Neuron Synapses.” <i>ELife</i>.
    eLife Sciences Publications, 2016. <a href="https://doi.org/10.7554/eLife.17977">https://doi.org/10.7554/eLife.17977</a>.
  ieee: N. Vyleta, C. Borges Merjane, and P. M. Jonas, “Plasticity-dependent, full
    detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses,” <i>eLife</i>,
    vol. 5. eLife Sciences Publications, 2016.
  ista: Vyleta N, Borges Merjane C, Jonas PM. 2016. Plasticity-dependent, full detonation
    at hippocampal mossy fiber–CA3 pyramidal neuron synapses. eLife. 5, e17977.
  mla: Vyleta, Nicholas, et al. “Plasticity-Dependent, Full Detonation at Hippocampal
    Mossy Fiber–CA3 Pyramidal Neuron Synapses.” <i>ELife</i>, vol. 5, e17977, eLife
    Sciences Publications, 2016, doi:<a href="https://doi.org/10.7554/eLife.17977">10.7554/eLife.17977</a>.
  short: N. Vyleta, C. Borges Merjane, P.M. Jonas, ELife 5 (2016).
date_created: 2018-12-11T11:51:22Z
date_published: 2016-10-25T00:00:00Z
date_updated: 2023-02-21T10:34:24Z
day: '25'
ddc:
- '571'
- '572'
department:
- _id: PeJo
doi: 10.7554/eLife.17977
ec_funded: 1
file:
- access_level: open_access
  checksum: a7201280c571bed88ebd459ce5ce6a47
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:05Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5257'
  file_name: IST-2016-715-v1+1_e17977-download.pdf
  file_size: 1477891
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         5'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '268548'
  name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glumatergic synapse
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '5947'
pubrep_id: '715'
quality_controlled: '1'
scopus_import: 1
status: public
title: Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal
  neuron synapses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2016'
...
---
_id: '1324'
abstract:
- lang: eng
  text: 'DEC-POMDPs extend POMDPs to a multi-agent setting, where several agents operate
    in an uncertain environment independently to achieve a joint objective. DEC-POMDPs
    have been studied with finite-horizon and infinite-horizon discounted-sum objectives,
    and there exist solvers both for exact and approximate solutions. In this work
    we consider Goal-DEC-POMDPs, where given a set of target states, the objective
    is to ensure that the target set is reached with minimal cost. We consider the
    indefinite-horizon (infinite-horizon with either discounted-sum, or undiscounted-sum,
    where absorbing goal states have zero-cost) problem. We present a new and novel
    method to solve the problem that extends methods for finite-horizon DEC-POMDPs
    and the RTDP-Bel approach for POMDPs. We present experimental results on several
    examples, and show that our approach presents promising results. Copyright '
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
citation:
  ama: 'Chatterjee K, Chmelik M. Indefinite-horizon reachability in Goal-DEC-POMDPs.
    In: <i>Proceedings of the Twenty-Sixth International Conference on International
    Conference on Automated Planning and Scheduling</i>. Vol 2016-January. AAAI Press;
    2016:88-96.'
  apa: 'Chatterjee, K., &#38; Chmelik, M. (2016). Indefinite-horizon reachability
    in Goal-DEC-POMDPs. In <i>Proceedings of the Twenty-Sixth International Conference
    on International Conference on Automated Planning and Scheduling</i> (Vol. 2016–January,
    pp. 88–96). London, United Kingdom: AAAI Press.'
  chicago: Chatterjee, Krishnendu, and Martin Chmelik. “Indefinite-Horizon Reachability
    in Goal-DEC-POMDPs.” In <i>Proceedings of the Twenty-Sixth International Conference
    on International Conference on Automated Planning and Scheduling</i>, 2016–January:88–96.
    AAAI Press, 2016.
  ieee: K. Chatterjee and M. Chmelik, “Indefinite-horizon reachability in Goal-DEC-POMDPs,”
    in <i>Proceedings of the Twenty-Sixth International Conference on International
    Conference on Automated Planning and Scheduling</i>, London, United Kingdom, 2016,
    vol. 2016–January, pp. 88–96.
  ista: 'Chatterjee K, Chmelik M. 2016. Indefinite-horizon reachability in Goal-DEC-POMDPs.
    Proceedings of the Twenty-Sixth International Conference on International Conference
    on Automated Planning and Scheduling. ICAPS: International Conference on Automated
    Planning and Scheduling vol. 2016–January, 88–96.'
  mla: Chatterjee, Krishnendu, and Martin Chmelik. “Indefinite-Horizon Reachability
    in Goal-DEC-POMDPs.” <i>Proceedings of the Twenty-Sixth International Conference
    on International Conference on Automated Planning and Scheduling</i>, vol. 2016–January,
    AAAI Press, 2016, pp. 88–96.
  short: K. Chatterjee, M. Chmelik, in:, Proceedings of the Twenty-Sixth International
    Conference on International Conference on Automated Planning and Scheduling, AAAI
    Press, 2016, pp. 88–96.
conference:
  end_date: 2016-06-17
  location: London, United Kingdom
  name: 'ICAPS: International Conference on Automated Planning and Scheduling'
  start_date: 2016-06-12
date_created: 2018-12-11T11:51:22Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2021-01-12T06:49:53Z
day: '01'
department:
- _id: KrCh
ec_funded: 1
language:
- iso: eng
main_file_link:
- url: http://www.aaai.org/ocs/index.php/ICAPS/ICAPS16/paper/view/12999
month: '01'
oa_version: None
page: 88 - 96
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: Proceedings of the Twenty-Sixth International Conference on International
  Conference on Automated Planning and Scheduling
publication_status: published
publisher: AAAI Press
publist_id: '5946'
quality_controlled: '1'
scopus_import: 1
status: public
title: Indefinite-horizon reachability in Goal-DEC-POMDPs
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 2016-January
year: '2016'
...
---
_id: '1325'
abstract:
- lang: eng
  text: We study graphs and two-player games in which rewards are assigned to states,
    and the goal of the players is to satisfy or dissatisfy certain property of the
    generated outcome, given as a mean payoff property. Since the notion of mean-payoff
    does not reflect possible fluctuations from the mean-payoff along a run, we propose
    definitions and algorithms for capturing the stability of the system, and give
    algorithms for deciding if a given mean payoff and stability objective can be
    ensured in the system.
acknowledgement: "The work has been supported by the Czech Science Foundation, grant
  No. 15-17564S, by EPSRC grant\r\nEP/M023656/1, and by the People Programme (Marie
  Curie Actions) of the European Union’s Seventh\r\nFramework Programme (FP7/2007-2013)
  under REA grant agreement no [291734]"
alternative_title:
- LIPIcs
article_number: '10'
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Vojtěch
  full_name: Forejt, Vojtěch
  last_name: Forejt
- first_name: Antonín
  full_name: Kučera, Antonín
  last_name: Kučera
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
citation:
  ama: 'Brázdil T, Forejt V, Kučera A, Novotný P. Stability in graphs and games. In:
    Vol 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2016. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">10.4230/LIPIcs.CONCUR.2016.10</a>'
  apa: 'Brázdil, T., Forejt, V., Kučera, A., &#38; Novotný, P. (2016). Stability in
    graphs and games (Vol. 59). Presented at the CONCUR: Concurrency Theory, Quebec
    City, Canada: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">https://doi.org/10.4230/LIPIcs.CONCUR.2016.10</a>'
  chicago: Brázdil, Tomáš, Vojtěch Forejt, Antonín Kučera, and Petr Novotný. “Stability
    in Graphs and Games,” Vol. 59. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2016. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">https://doi.org/10.4230/LIPIcs.CONCUR.2016.10</a>.
  ieee: 'T. Brázdil, V. Forejt, A. Kučera, and P. Novotný, “Stability in graphs and
    games,” presented at the CONCUR: Concurrency Theory, Quebec City, Canada, 2016,
    vol. 59.'
  ista: 'Brázdil T, Forejt V, Kučera A, Novotný P. 2016. Stability in graphs and games.
    CONCUR: Concurrency Theory, LIPIcs, vol. 59, 10.'
  mla: Brázdil, Tomáš, et al. <i>Stability in Graphs and Games</i>. Vol. 59, 10, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2016, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2016.10">10.4230/LIPIcs.CONCUR.2016.10</a>.
  short: T. Brázdil, V. Forejt, A. Kučera, P. Novotný, in:, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2016.
conference:
  end_date: 2016-08-26
  location: Quebec City, Canada
  name: 'CONCUR: Concurrency Theory'
  start_date: 2016-08-23
date_created: 2018-12-11T11:51:23Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2021-01-12T06:49:53Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CONCUR.2016.10
ec_funded: 1
file:
- access_level: open_access
  checksum: 3c2dc6ab0358f8aa8f7aa7d6c1293159
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:40Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5229'
  file_name: IST-2016-665-v1+1_Forejt_et_al__Stability_in_graphs_and_games.pdf
  file_size: 553648
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '        59'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '5944'
pubrep_id: '665'
quality_controlled: '1'
scopus_import: 1
status: public
title: Stability in graphs and games
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 59
year: '2016'
...
---
_id: '1326'
abstract:
- lang: eng
  text: 'Energy Markov Decision Processes (EMDPs) are finite-state Markov decision
    processes where each transition is assigned an integer counter update and a rational
    payoff. An EMDP configuration is a pair s(n), where s is a control state and n
    is the current counter value. The configurations are changed by performing transitions
    in the standard way. We consider the problem of computing a safe strategy (i.e.,
    a strategy that keeps the counter non-negative) which maximizes the expected mean
    payoff. '
acknowledgement: The research was funded by the Czech Science Foundation Grant No.
  P202/12/G061 and by the People Programme (Marie Curie Actions) of the European Union’s
  Seventh Framework Programme (FP7/2007-2013) under REA grant agreement no [291734].
alternative_title:
- LNCS
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Antonín
  full_name: Kučera, Antonín
  last_name: Kučera
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
citation:
  ama: 'Brázdil T, Kučera A, Novotný P. Optimizing the expected mean payoff in Energy
    Markov Decision Processes. In: Vol 9938. Springer; 2016:32-49. doi:<a href="https://doi.org/10.1007/978-3-319-46520-3_3">10.1007/978-3-319-46520-3_3</a>'
  apa: 'Brázdil, T., Kučera, A., &#38; Novotný, P. (2016). Optimizing the expected
    mean payoff in Energy Markov Decision Processes (Vol. 9938, pp. 32–49). Presented
    at the ATVA: Automated Technology for Verification and Analysis, Chiba, Japan:
    Springer. <a href="https://doi.org/10.1007/978-3-319-46520-3_3">https://doi.org/10.1007/978-3-319-46520-3_3</a>'
  chicago: Brázdil, Tomáš, Antonín Kučera, and Petr Novotný. “Optimizing the Expected
    Mean Payoff in Energy Markov Decision Processes,” 9938:32–49. Springer, 2016.
    <a href="https://doi.org/10.1007/978-3-319-46520-3_3">https://doi.org/10.1007/978-3-319-46520-3_3</a>.
  ieee: 'T. Brázdil, A. Kučera, and P. Novotný, “Optimizing the expected mean payoff
    in Energy Markov Decision Processes,” presented at the ATVA: Automated Technology
    for Verification and Analysis, Chiba, Japan, 2016, vol. 9938, pp. 32–49.'
  ista: 'Brázdil T, Kučera A, Novotný P. 2016. Optimizing the expected mean payoff
    in Energy Markov Decision Processes. ATVA: Automated Technology for Verification
    and Analysis, LNCS, vol. 9938, 32–49.'
  mla: Brázdil, Tomáš, et al. <i>Optimizing the Expected Mean Payoff in Energy Markov
    Decision Processes</i>. Vol. 9938, Springer, 2016, pp. 32–49, doi:<a href="https://doi.org/10.1007/978-3-319-46520-3_3">10.1007/978-3-319-46520-3_3</a>.
  short: T. Brázdil, A. Kučera, P. Novotný, in:, Springer, 2016, pp. 32–49.
conference:
  end_date: 2016-10-20
  location: Chiba, Japan
  name: 'ATVA: Automated Technology for Verification and Analysis'
  start_date: 2016-10-17
date_created: 2018-12-11T11:51:23Z
date_published: 2016-09-22T00:00:00Z
date_updated: 2021-01-12T06:49:53Z
day: '22'
department:
- _id: KrCh
doi: 10.1007/978-3-319-46520-3_3
ec_funded: 1
intvolume: '      9938'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1607.00678
month: '09'
oa: 1
oa_version: Preprint
page: 32 - 49
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication_status: published
publisher: Springer
publist_id: '5943'
quality_controlled: '1'
scopus_import: 1
status: public
title: Optimizing the expected mean payoff in Energy Markov Decision Processes
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 9938
year: '2016'
...
---
_id: '1327'
abstract:
- lang: eng
  text: 'We consider partially observable Markov decision processes (POMDPs) with
    a set of target states and positive integer costs associated with every transition.
    The traditional optimization objective (stochastic shortest path) asks to minimize
    the expected total cost until the target set is reached. We extend the traditional
    framework of POMDPs to model energy consumption, which represents a hard constraint.
    The energy levels may increase and decrease with transitions, and the hard constraint
    requires that the energy level must remain positive in all steps till the target
    is reached. First, we present a novel algorithm for solving POMDPs with energy
    levels, developing on existing POMDP solvers and using RTDP as its main method.
    Our second contribution is related to policy representation. For larger POMDP
    instances the policies computed by existing solvers are too large to be understandable.
    We present an automated procedure based on machine learning techniques that automatically
    extracts important decisions of the policy allowing us to compute succinct human
    readable policies. Finally, we show experimentally that our algorithm performs
    well and computes succinct policies on a number of POMDP instances from the literature
    that were naturally enhanced with energy levels. '
author:
- first_name: Tomáš
  full_name: Brázdil, Tomáš
  last_name: Brázdil
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Chmelik, Martin
  id: 3624234E-F248-11E8-B48F-1D18A9856A87
  last_name: Chmelik
- first_name: Anchit
  full_name: Gupta, Anchit
  last_name: Gupta
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
citation:
  ama: 'Brázdil T, Chatterjee K, Chmelik M, Gupta A, Novotný P. Stochastic shortest
    path with energy constraints in POMDPs. In: <i>Proceedings of the 15th International
    Conference on Autonomous Agents and Multiagent Systems</i>. ACM; 2016:1465-1466.'
  apa: 'Brázdil, T., Chatterjee, K., Chmelik, M., Gupta, A., &#38; Novotný, P. (2016).
    Stochastic shortest path with energy constraints in POMDPs. In <i>Proceedings
    of the 15th International Conference on Autonomous Agents and Multiagent Systems</i>
    (pp. 1465–1466). Singapore: ACM.'
  chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Martin Chmelik, Anchit Gupta, and
    Petr Novotný. “Stochastic Shortest Path with Energy Constraints in POMDPs.” In
    <i>Proceedings of the 15th International Conference on Autonomous Agents and Multiagent
    Systems</i>, 1465–66. ACM, 2016.
  ieee: T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, and P. Novotný, “Stochastic
    shortest path with energy constraints in POMDPs,” in <i>Proceedings of the 15th
    International Conference on Autonomous Agents and Multiagent Systems</i>, Singapore,
    2016, pp. 1465–1466.
  ista: 'Brázdil T, Chatterjee K, Chmelik M, Gupta A, Novotný P. 2016. Stochastic
    shortest path with energy constraints in POMDPs. Proceedings of the 15th International
    Conference on Autonomous Agents and Multiagent Systems. AAMAS: Autonomous Agents
    &#38; Multiagent Systems, 1465–1466.'
  mla: Brázdil, Tomáš, et al. “Stochastic Shortest Path with Energy Constraints in
    POMDPs.” <i>Proceedings of the 15th International Conference on Autonomous Agents
    and Multiagent Systems</i>, ACM, 2016, pp. 1465–66.
  short: T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, P. Novotný, in:, Proceedings
    of the 15th International Conference on Autonomous Agents and Multiagent Systems,
    ACM, 2016, pp. 1465–1466.
conference:
  end_date: 2016-05-13
  location: Singapore
  name: 'AAMAS: Autonomous Agents & Multiagent Systems'
  start_date: 2016-05-09
date_created: 2018-12-11T11:51:23Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2021-01-12T06:49:54Z
day: '01'
department:
- _id: KrCh
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.07565
month: '01'
oa: 1
oa_version: Preprint
page: 1465 - 1466
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication: Proceedings of the 15th International Conference on Autonomous Agents
  and Multiagent Systems
publication_status: published
publisher: ACM
publist_id: '5942'
quality_controlled: '1'
scopus_import: 1
status: public
title: Stochastic shortest path with energy constraints in POMDPs
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '1328'
abstract:
- lang: eng
  text: Hole spins have gained considerable interest in the past few years due to
    their potential for fast electrically controlled qubits. Here, we study holes
    confined in Ge hut wires, a so-far unexplored type of nanostructure. Low-temperature
    magnetotransport measurements reveal a large anisotropy between the in-plane and
    out-of-plane g-factors of up to 18. Numerical simulations verify that this large
    anisotropy originates from a confined wave function of heavy-hole character. A
    light-hole admixture of less than 1% is estimated for the states of lowest energy,
    leading to a surprisingly large reduction of the out-of-plane g-factors compared
    with those for pure heavy holes. Given this tiny light-hole contribution, the
    spin lifetimes are expected to be very long, even in isotopically nonpurified
    samples.
acknowledgement: 'The work was supported by the EC FP7 ICT project SiSPIN no. 323841,
  the EC FP7 ICT project PAMS no. 610446, the ERC Starting Grant no. 335497, the FWF-I-1190-N20
  project, and the Swiss NSF. We acknowledge F. Schäffler for fruitful discussions
  related to the hut wire growth and for giving us access to the molecular beam epitaxy
  system, M. Schatzl for her support in electron beam lithography, and V. Jadris ̌ko
  for helping us with the COMSOL simulations. Finally, we thank G. Bauer for his continuous
  support. '
author:
- first_name: Hannes
  full_name: Watzinger, Hannes
  id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
  last_name: Watzinger
- first_name: Christoph
  full_name: Kloeffel, Christoph
  last_name: Kloeffel
- first_name: Lada
  full_name: Vukusic, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukusic
  orcid: 0000-0003-2424-8636
- first_name: Marta
  full_name: Rossell, Marta
  last_name: Rossell
- first_name: Violetta
  full_name: Sessi, Violetta
  last_name: Sessi
- first_name: Josip
  full_name: Kukucka, Josip
  id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
  last_name: Kukucka
- first_name: Raimund
  full_name: Kirchschlager, Raimund
  last_name: Kirchschlager
- first_name: Elisabeth
  full_name: Lausecker, Elisabeth
  id: 33662F76-F248-11E8-B48F-1D18A9856A87
  last_name: Lausecker
- first_name: Alisha
  full_name: Truhlar, Alisha
  id: 49CBC780-F248-11E8-B48F-1D18A9856A87
  last_name: Truhlar
- first_name: Martin
  full_name: Glaser, Martin
  last_name: Glaser
- first_name: Armando
  full_name: Rastelli, Armando
  last_name: Rastelli
- first_name: Andreas
  full_name: Fuhrer, Andreas
  last_name: Fuhrer
- first_name: Daniel
  full_name: Loss, Daniel
  last_name: Loss
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
citation:
  ama: Watzinger H, Kloeffel C, Vukušić L, et al. Heavy-hole states in germanium hut
    wires. <i>Nano Letters</i>. 2016;16(11):6879-6885. doi:<a href="https://doi.org/10.1021/acs.nanolett.6b02715">10.1021/acs.nanolett.6b02715</a>
  apa: Watzinger, H., Kloeffel, C., Vukušić, L., Rossell, M., Sessi, V., Kukucka,
    J., … Katsaros, G. (2016). Heavy-hole states in germanium hut wires. <i>Nano Letters</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.6b02715">https://doi.org/10.1021/acs.nanolett.6b02715</a>
  chicago: Watzinger, Hannes, Christoph Kloeffel, Lada Vukušić, Marta Rossell, Violetta
    Sessi, Josip Kukucka, Raimund Kirchschlager, et al. “Heavy-Hole States in Germanium
    Hut Wires.” <i>Nano Letters</i>. American Chemical Society, 2016. <a href="https://doi.org/10.1021/acs.nanolett.6b02715">https://doi.org/10.1021/acs.nanolett.6b02715</a>.
  ieee: H. Watzinger <i>et al.</i>, “Heavy-hole states in germanium hut wires,” <i>Nano
    Letters</i>, vol. 16, no. 11. American Chemical Society, pp. 6879–6885, 2016.
  ista: Watzinger H, Kloeffel C, Vukušić L, Rossell M, Sessi V, Kukucka J, Kirchschlager
    R, Lausecker E, Truhlar A, Glaser M, Rastelli A, Fuhrer A, Loss D, Katsaros G.
    2016. Heavy-hole states in germanium hut wires. Nano Letters. 16(11), 6879–6885.
  mla: Watzinger, Hannes, et al. “Heavy-Hole States in Germanium Hut Wires.” <i>Nano
    Letters</i>, vol. 16, no. 11, American Chemical Society, 2016, pp. 6879–85, doi:<a
    href="https://doi.org/10.1021/acs.nanolett.6b02715">10.1021/acs.nanolett.6b02715</a>.
  short: H. Watzinger, C. Kloeffel, L. Vukušić, M. Rossell, V. Sessi, J. Kukucka,
    R. Kirchschlager, E. Lausecker, A. Truhlar, M. Glaser, A. Rastelli, A. Fuhrer,
    D. Loss, G. Katsaros, Nano Letters 16 (2016) 6879–6885.
date_created: 2018-12-11T11:51:24Z
date_published: 2016-09-22T00:00:00Z
date_updated: 2023-09-07T13:15:02Z
day: '22'
ddc:
- '539'
department:
- _id: GeKa
doi: 10.1021/acs.nanolett.6b02715
ec_funded: 1
file:
- access_level: open_access
  checksum: b63feece90d7b620ece49ca632e34ff3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:04Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '5053'
  file_name: IST-2016-664-v1+1_acs.nanolett.6b02715.pdf
  file_size: 535121
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '        16'
issue: '11'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 6879 - 6885
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '335497'
  name: Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires
publication: Nano Letters
publication_status: published
publisher: American Chemical Society
publist_id: '5941'
pubrep_id: '664'
quality_controlled: '1'
related_material:
  record:
  - id: '7977'
    relation: popular_science
    status: for_moderation
  - id: '7996'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Heavy-hole states in germanium hut wires
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2016'
...
---
_id: '1329'
abstract:
- lang: eng
  text: Daphnia species have become models for ecological genomics and exhibit interesting
    features, such as high phenotypic plasticity and a densely packed genome with
    many lineage-specific genes. They are also cyclic parthenogenetic, with alternating
    asexual and sexual cycles and environmental sex determination. Here, we present
    a de novo transcriptome assembly of over 32,000 D. galeata genes and use it to
    investigate gene expression in females and spontaneously produced males of two
    clonal lines derived from lakes in Germany and the Czech Republic. We find that
    only a low percentage (18%) of genes shows sex-biased expression and that there
    are many more female-biased gene (FBG) than male-biased gene (MBG). Furthermore,
    FBGs tend to be more conserved between species than MBGs in both sequence and
    expression. These patterns may be a consequence of cyclic parthenogenesis leading
    to a relaxation of purifying selection on MBGs. The two clonal lines show considerable
    differences in both number and identity of sex-biased genes, suggesting that they
    may have reproductive strategies differing in their investment in sexual reproduction.
    Orthologs of key genes in the sex determination and juvenile hormone pathways,
    which are thought to be important for the transition from asexual to sexual reproduction,
    are present in D. galeata and highly conserved among Daphnia species.
acknowledgement: This study was financially supported by individual grants from the
  Volkswagen Stiftung (to M.C.), the Deutsche Forschungsgemeinschaft (grant PA 903/6
  to J.P.) and the DAAD (to A.K.H.). The authors would like to thank I. Schrank, L.
  Theodosiou, M. Kredler, C. Laforsch, J. Wolinska, J. Griebel, R. Jaenichen, and
  K. Otte for providing the necessary resources and help for maintaining Daphnia cultures
  in the laboratory. H. Lainer supported us for the molecular laboratory work. D.
  Gilbert and J. K. Colbourne contributed ideas for the bioinformatics analysis, and
  L. Hardulak did the orthology mapping including more insect species. This study
  was financially supported by individual grants from the Volkswagen Stiftung (to
  M.C.), the Deutsche Forschungsgemeinschaft (grant PA 903/6 to J.P.) and the DAAD
  (to A.K.H.). This work benefits from and contributes to the Daphnia Genomics Consortium.
author:
- first_name: Ann K
  full_name: Huylmans, Ann K
  id: 4C0A3874-F248-11E8-B48F-1D18A9856A87
  last_name: Huylmans
  orcid: 0000-0001-8871-4961
- first_name: Alberto
  full_name: López Ezquerra, Alberto
  last_name: López Ezquerra
- first_name: John
  full_name: Parsch, John
  last_name: Parsch
- first_name: Mathilde
  full_name: Cordellier, Mathilde
  last_name: Cordellier
citation:
  ama: Huylmans AK, López Ezquerra A, Parsch J, Cordellier M. De novo transcriptome
    assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia
    galeata. <i>Genome Biology and Evolution</i>. 2016;8(10):3120-3139. doi:<a href="https://doi.org/10.1093/gbe/evw221">10.1093/gbe/evw221</a>
  apa: Huylmans, A. K., López Ezquerra, A., Parsch, J., &#38; Cordellier, M. (2016).
    De novo transcriptome assembly and sex-biased gene expression in the cyclical
    parthenogenetic Daphnia galeata. <i>Genome Biology and Evolution</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/gbe/evw221">https://doi.org/10.1093/gbe/evw221</a>
  chicago: Huylmans, Ann K, Alberto López Ezquerra, John Parsch, and Mathilde Cordellier.
    “De Novo Transcriptome Assembly and Sex-Biased Gene Expression in the Cyclical
    Parthenogenetic Daphnia Galeata.” <i>Genome Biology and Evolution</i>. Oxford
    University Press, 2016. <a href="https://doi.org/10.1093/gbe/evw221">https://doi.org/10.1093/gbe/evw221</a>.
  ieee: A. K. Huylmans, A. López Ezquerra, J. Parsch, and M. Cordellier, “De novo
    transcriptome assembly and sex-biased gene expression in the cyclical parthenogenetic
    Daphnia galeata,” <i>Genome Biology and Evolution</i>, vol. 8, no. 10. Oxford
    University Press, pp. 3120–3139, 2016.
  ista: Huylmans AK, López Ezquerra A, Parsch J, Cordellier M. 2016. De novo transcriptome
    assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia
    galeata. Genome Biology and Evolution. 8(10), 3120–3139.
  mla: Huylmans, Ann K., et al. “De Novo Transcriptome Assembly and Sex-Biased Gene
    Expression in the Cyclical Parthenogenetic Daphnia Galeata.” <i>Genome Biology
    and Evolution</i>, vol. 8, no. 10, Oxford University Press, 2016, pp. 3120–39,
    doi:<a href="https://doi.org/10.1093/gbe/evw221">10.1093/gbe/evw221</a>.
  short: A.K. Huylmans, A. López Ezquerra, J. Parsch, M. Cordellier, Genome Biology
    and Evolution 8 (2016) 3120–3139.
date_created: 2018-12-11T11:51:24Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2021-01-12T06:49:55Z
day: '01'
ddc:
- '576'
department:
- _id: BeVi
doi: 10.1093/gbe/evw221
file:
- access_level: open_access
  checksum: 25c7adcb452d39d3b6343ff4b57a652d
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:06Z
  date_updated: 2020-07-14T12:44:44Z
  file_id: '4924'
  file_name: IST-2016-663-v1+1_Genome_Biol_Evol-2016-Huylmans-3120-39.pdf
  file_size: 1406265
  relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         8'
issue: '10'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '10'
oa: 1
oa_version: Published Version
page: 3120 - 3139
publication: Genome Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '5940'
pubrep_id: '663'
quality_controlled: '1'
scopus_import: 1
status: public
title: De novo transcriptome assembly and sex-biased gene expression in the cyclical
  parthenogenetic Daphnia galeata
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2016'
...
---
_id: '1330'
abstract:
- lang: eng
  text: In this paper we investigate the existence of closed billiard trajectories
    in not necessarily smooth convex bodies. In particular, we show that if a body
    K ⊂ Rd has the property that the tangent cone of every non-smooth point q ∉ ∂K
    is acute (in a certain sense), then there is a closed billiard trajectory in K.
acknowledgement: Supported by People Programme (Marie Curie Actions) of the European
  Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement n°[291734].
  Supported by the Russian Foundation for Basic Research grant 15-31-20403 (mol a
  ved), by the Russian Foundation for Basic Research grant 15-01-99563 A, in part
  by the Moebius Contest Foundation for Young Scientists, and in part by the Simons
  Foundation.
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Alexey
  full_name: Balitskiy, Alexey
  last_name: Balitskiy
citation:
  ama: Akopyan A, Balitskiy A. Billiards in convex bodies with acute angles. <i>Israel
    Journal of Mathematics</i>. 2016;216(2):833-845. doi:<a href="https://doi.org/10.1007/s11856-016-1429-z">10.1007/s11856-016-1429-z</a>
  apa: Akopyan, A., &#38; Balitskiy, A. (2016). Billiards in convex bodies with acute
    angles. <i>Israel Journal of Mathematics</i>. Springer. <a href="https://doi.org/10.1007/s11856-016-1429-z">https://doi.org/10.1007/s11856-016-1429-z</a>
  chicago: Akopyan, Arseniy, and Alexey Balitskiy. “Billiards in Convex Bodies with
    Acute Angles.” <i>Israel Journal of Mathematics</i>. Springer, 2016. <a href="https://doi.org/10.1007/s11856-016-1429-z">https://doi.org/10.1007/s11856-016-1429-z</a>.
  ieee: A. Akopyan and A. Balitskiy, “Billiards in convex bodies with acute angles,”
    <i>Israel Journal of Mathematics</i>, vol. 216, no. 2. Springer, pp. 833–845,
    2016.
  ista: Akopyan A, Balitskiy A. 2016. Billiards in convex bodies with acute angles.
    Israel Journal of Mathematics. 216(2), 833–845.
  mla: Akopyan, Arseniy, and Alexey Balitskiy. “Billiards in Convex Bodies with Acute
    Angles.” <i>Israel Journal of Mathematics</i>, vol. 216, no. 2, Springer, 2016,
    pp. 833–45, doi:<a href="https://doi.org/10.1007/s11856-016-1429-z">10.1007/s11856-016-1429-z</a>.
  short: A. Akopyan, A. Balitskiy, Israel Journal of Mathematics 216 (2016) 833–845.
date_created: 2018-12-11T11:51:24Z
date_published: 2016-10-15T00:00:00Z
date_updated: 2021-01-12T06:49:56Z
day: '15'
department:
- _id: HeEd
doi: 10.1007/s11856-016-1429-z
ec_funded: 1
intvolume: '       216'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1506.06014
month: '10'
oa: 1
oa_version: Preprint
page: 833 - 845
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Israel Journal of Mathematics
publication_status: published
publisher: Springer
publist_id: '5938'
quality_controlled: '1'
scopus_import: 1
status: public
title: Billiards in convex bodies with acute angles
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 216
year: '2016'
...
---
_id: '1331'
abstract:
- lang: eng
  text: 'Cytokinin is a phytohormone that is well known for its roles in numerous
    plant growth and developmental processes, yet it has also been linked to abiotic
    stress response in a less defined manner. Arabidopsis (Arabidopsis thaliana) Cytokinin
    Response Factor 6 (CRF6) is a cytokinin-responsive AP2/ERF-family transcription
    factor that, through the cytokinin signaling pathway, plays a key role in the
    inhibition of dark-induced senescence. CRF6 expression is also induced by oxidative
    stress, and here we show a novel function for CRF6 in relation to oxidative stress
    and identify downstream transcriptional targets of CRF6 that are repressed in
    response to oxidative stress. Analysis of transcriptomic changes in wild-type
    and crf6 mutant plants treated with H2O2 identified CRF6-dependent differentially
    expressed transcripts, many of which were repressed rather than induced. Moreover,
    many repressed genes also show decreased expression in 35S:CRF6 overexpressing
    plants. Together, these findings suggest that CRF6 functions largely as a transcriptional
    repressor. Interestingly, among the H2O2 repressed CRF6-dependent transcripts
    was a set of five genes associated with cytokinin processes: (signaling) ARR6,
    ARR9, ARR11, (biosynthesis) LOG7, and (transport) ABCG14. We have examined mutants
    of these cytokinin-associated target genes to reveal novel connections to oxidative
    stress. Further examination of CRF6-DNA interactions indicated that CRF6 may regulate
    its targets both directly and indirectly. Together, this shows that CRF6 functions
    during oxidative stress as a negative regulator to control this cytokinin-associated
    module of CRF6- dependent genes and establishes a novel connection between cytokinin
    and oxidative stress response.'
acknowledgement: "This work was financially supported by the following: The Alabama
  Agricultural Experiment Station HATCH grants 370222-310010-2055 and 370225-310006-2055
  for funding to P.J.Z., E.A.K, A.M.P., and A.M.R. P.J.Z. and E.A.K were supported
  by an Auburn University Cellular and Molecular Biosciences Research Fellowship.
  I.D.C. is a postdoctoral fellow of the Research Foundation Flanders (FWO) (FWO/PDO14/043)
  and is also supported by FWO travel\r\ngrant 12N2415N. F.V.B. was supported by grants
  from the Interuniversity Attraction Poles Programme (IUAP P7/29 MARS) initiated
  by the Belgian Science Policy Office and Ghent University (Multidisciplinary Research
  Partnership Biotechnology for a Sustainable Economy, grant 01MRB510W)."
article_processing_charge: No
article_type: original
author:
- first_name: Paul
  full_name: Zwack, Paul
  last_name: Zwack
- first_name: Inge
  full_name: De Clercq, Inge
  last_name: De Clercq
- first_name: Timothy
  full_name: Howton, Timothy
  last_name: Howton
- first_name: H Tucker
  full_name: Hallmark, H Tucker
  last_name: Hallmark
- first_name: Andrej
  full_name: Hurny, Andrej
  id: 4DC4AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Hurny
- first_name: Erika
  full_name: Keshishian, Erika
  last_name: Keshishian
- first_name: Alyssa
  full_name: Parish, Alyssa
  last_name: Parish
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: M Shahid
  full_name: Mukhtar, M Shahid
  last_name: Mukhtar
- first_name: Frank
  full_name: Van Breusegem, Frank
  last_name: Van Breusegem
- first_name: Aaron
  full_name: Rashotte, Aaron
  last_name: Rashotte
citation:
  ama: Zwack P, De Clercq I, Howton T, et al. Cytokinin response factor 6 represses
    cytokinin-associated genes during oxidative stress. <i>Plant Physiology</i>. 2016;172(2):1249-1258.
    doi:<a href="https://doi.org/10.1104/pp.16.00415">10.1104/pp.16.00415</a>
  apa: Zwack, P., De Clercq, I., Howton, T., Hallmark, H. T., Hurny, A., Keshishian,
    E., … Rashotte, A. (2016). Cytokinin response factor 6 represses cytokinin-associated
    genes during oxidative stress. <i>Plant Physiology</i>. American Society of Plant
    Biologists. <a href="https://doi.org/10.1104/pp.16.00415">https://doi.org/10.1104/pp.16.00415</a>
  chicago: Zwack, Paul, Inge De Clercq, Timothy Howton, H Tucker Hallmark, Andrej
    Hurny, Erika Keshishian, Alyssa Parish, et al. “Cytokinin Response Factor 6 Represses
    Cytokinin-Associated Genes during Oxidative Stress.” <i>Plant Physiology</i>.
    American Society of Plant Biologists, 2016. <a href="https://doi.org/10.1104/pp.16.00415">https://doi.org/10.1104/pp.16.00415</a>.
  ieee: P. Zwack <i>et al.</i>, “Cytokinin response factor 6 represses cytokinin-associated
    genes during oxidative stress,” <i>Plant Physiology</i>, vol. 172, no. 2. American
    Society of Plant Biologists, pp. 1249–1258, 2016.
  ista: Zwack P, De Clercq I, Howton T, Hallmark HT, Hurny A, Keshishian E, Parish
    A, Benková E, Mukhtar MS, Van Breusegem F, Rashotte A. 2016. Cytokinin response
    factor 6 represses cytokinin-associated genes during oxidative stress. Plant Physiology.
    172(2), 1249–1258.
  mla: Zwack, Paul, et al. “Cytokinin Response Factor 6 Represses Cytokinin-Associated
    Genes during Oxidative Stress.” <i>Plant Physiology</i>, vol. 172, no. 2, American
    Society of Plant Biologists, 2016, pp. 1249–58, doi:<a href="https://doi.org/10.1104/pp.16.00415">10.1104/pp.16.00415</a>.
  short: P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian,
    A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology
    172 (2016) 1249–1258.
date_created: 2018-12-11T11:51:25Z
date_published: 2016-10-02T00:00:00Z
date_updated: 2022-05-24T09:26:03Z
day: '02'
department:
- _id: EvBe
doi: 10.1104/pp.16.00415
intvolume: '       172'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1104/pp.16.00415
month: '10'
oa: 1
oa_version: Published Version
page: 1249 - 1258
publication: Plant Physiology
publication_identifier:
  eissn:
  - 1532-2548
  issn:
  - 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '5937'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cytokinin response factor 6 represses cytokinin-associated genes during oxidative
  stress
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 172
year: '2016'
...
---
_id: '1332'
abstract:
- lang: eng
  text: Antibiotic-sensitive and -resistant bacteria coexist in natural environments
    with low, if detectable, antibiotic concentrations. Except possibly around localized
    antibiotic sources, where resistance can provide a strong advantage, bacterial
    fitness is dominated by stresses unaffected by resistance to the antibiotic. How
    do such mixed and heterogeneous conditions influence the selective advantage or
    disadvantage of antibiotic resistance? Here we find that sub-inhibitory levels
    of tetracyclines potentiate selection for or against tetracycline resistance around
    localized sources of almost any toxin or stress. Furthermore, certain stresses
    generate alternating rings of selection for and against resistance around a localized
    source of the antibiotic. In these conditions, localized antibiotic sources, even
    at high strengths, can actually produce a net selection against resistance to
    the antibiotic. Our results show that interactions between the effects of an antibiotic
    and other stresses in inhomogeneous environments can generate pervasive, complex
    patterns of selection both for and against antibiotic resistance.
acknowledgement: This work was partially supported by US National Institutes of Health
  grant R01-GM081617, Israeli Centers of Research Excellence I-CORE Program ISF Grant
  No. 152/11, and the European Research Council FP7 ERC Grant 281891.
article_number: '10333'
author:
- first_name: Remy P
  full_name: Chait, Remy P
  id: 3464AE84-F248-11E8-B48F-1D18A9856A87
  last_name: Chait
  orcid: 0000-0003-0876-3187
- first_name: Adam
  full_name: Palmer, Adam
  last_name: Palmer
- first_name: Idan
  full_name: Yelin, Idan
  last_name: Yelin
- first_name: Roy
  full_name: Kishony, Roy
  last_name: Kishony
citation:
  ama: Chait RP, Palmer A, Yelin I, Kishony R. Pervasive selection for and against
    antibiotic resistance in inhomogeneous multistress environments. <i>Nature Communications</i>.
    2016;7. doi:<a href="https://doi.org/10.1038/ncomms10333">10.1038/ncomms10333</a>
  apa: Chait, R. P., Palmer, A., Yelin, I., &#38; Kishony, R. (2016). Pervasive selection
    for and against antibiotic resistance in inhomogeneous multistress environments.
    <i>Nature Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/ncomms10333">https://doi.org/10.1038/ncomms10333</a>
  chicago: Chait, Remy P, Adam Palmer, Idan Yelin, and Roy Kishony. “Pervasive Selection
    for and against Antibiotic Resistance in Inhomogeneous Multistress Environments.”
    <i>Nature Communications</i>. Nature Publishing Group, 2016. <a href="https://doi.org/10.1038/ncomms10333">https://doi.org/10.1038/ncomms10333</a>.
  ieee: R. P. Chait, A. Palmer, I. Yelin, and R. Kishony, “Pervasive selection for
    and against antibiotic resistance in inhomogeneous multistress environments,”
    <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.
  ista: Chait RP, Palmer A, Yelin I, Kishony R. 2016. Pervasive selection for and
    against antibiotic resistance in inhomogeneous multistress environments. Nature
    Communications. 7, 10333.
  mla: Chait, Remy P., et al. “Pervasive Selection for and against Antibiotic Resistance
    in Inhomogeneous Multistress Environments.” <i>Nature Communications</i>, vol.
    7, 10333, Nature Publishing Group, 2016, doi:<a href="https://doi.org/10.1038/ncomms10333">10.1038/ncomms10333</a>.
  short: R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).
date_created: 2018-12-11T11:51:25Z
date_published: 2016-01-20T00:00:00Z
date_updated: 2021-01-12T06:49:57Z
day: '20'
ddc:
- '570'
- '579'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1038/ncomms10333
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file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         7'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5936'
pubrep_id: '662'
quality_controlled: '1'
scopus_import: 1
status: public
title: Pervasive selection for and against antibiotic resistance in inhomogeneous
  multistress environments
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
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...
---
_id: '1333'
abstract:
- lang: eng
  text: Social dilemmas force players to balance between personal and collective gain.
    In many dilemmas, such as elected governments negotiating climate-change mitigation
    measures, the decisions are made not by individual players but by their representatives.
    However, the behaviour of representatives in social dilemmas has not been investigated
    experimentally. Here inspired by the negotiations for greenhouse-gas emissions
    reductions, we experimentally study a collective-risk social dilemma that involves
    representatives deciding on behalf of their fellow group members. Representatives
    can be re-elected or voted out after each consecutive collective-risk game. Selfish
    players are preferentially elected and are hence found most frequently in the
    &quot;representatives&quot; treatment. Across all treatments, we identify the
    selfish players as extortioners. As predicted by our mathematical model, their
    steadfast strategies enforce cooperation from fair players who finally compensate
    almost completely the deficit caused by the extortionate co-players. Everybody
    gains, but the extortionate representatives and their groups gain the most.
acknowledgement: We thank the students for participation; H.-J. Krambeck for writing
  the software for the game; H. Arndt, T. Bakker, L. Becks, H. Brendelberger, S. Dobler
  and T. Reusch for support; and the Max Planck Society for the Advancement of Science
  for funding.
article_number: '10915'
author:
- first_name: Manfred
  full_name: Milinski, Manfred
  last_name: Milinski
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: Dirk
  full_name: Semmann, Dirk
  last_name: Semmann
- first_name: Ralf
  full_name: Sommerfeld, Ralf
  last_name: Sommerfeld
- first_name: Jochem
  full_name: Marotzke, Jochem
  last_name: Marotzke
citation:
  ama: Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. Humans choose representatives
    who enforce cooperation in social dilemmas through extortion. <i>Nature Communications</i>.
    2016;7. doi:<a href="https://doi.org/10.1038/ncomms10915">10.1038/ncomms10915</a>
  apa: Milinski, M., Hilbe, C., Semmann, D., Sommerfeld, R., &#38; Marotzke, J. (2016).
    Humans choose representatives who enforce cooperation in social dilemmas through
    extortion. <i>Nature Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/ncomms10915">https://doi.org/10.1038/ncomms10915</a>
  chicago: Milinski, Manfred, Christian Hilbe, Dirk Semmann, Ralf Sommerfeld, and
    Jochem Marotzke. “Humans Choose Representatives Who Enforce Cooperation in Social
    Dilemmas through Extortion.” <i>Nature Communications</i>. Nature Publishing Group,
    2016. <a href="https://doi.org/10.1038/ncomms10915">https://doi.org/10.1038/ncomms10915</a>.
  ieee: M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, and J. Marotzke, “Humans
    choose representatives who enforce cooperation in social dilemmas through extortion,”
    <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.
  ista: Milinski M, Hilbe C, Semmann D, Sommerfeld R, Marotzke J. 2016. Humans choose
    representatives who enforce cooperation in social dilemmas through extortion.
    Nature Communications. 7, 10915.
  mla: Milinski, Manfred, et al. “Humans Choose Representatives Who Enforce Cooperation
    in Social Dilemmas through Extortion.” <i>Nature Communications</i>, vol. 7, 10915,
    Nature Publishing Group, 2016, doi:<a href="https://doi.org/10.1038/ncomms10915">10.1038/ncomms10915</a>.
  short: M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, J. Marotzke, Nature Communications
    7 (2016).
date_created: 2018-12-11T11:51:25Z
date_published: 2016-03-07T00:00:00Z
date_updated: 2021-01-12T06:49:57Z
day: '07'
ddc:
- '519'
- '530'
- '599'
department:
- _id: KrCh
doi: 10.1038/ncomms10915
file:
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  checksum: 9ea0d7ce59a555a1cb8353d5559407cb
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  file_id: '4834'
  file_name: IST-2016-661-v1+1_ncomms10915.pdf
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file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: '         7'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '5935'
pubrep_id: '661'
quality_controlled: '1'
scopus_import: 1
status: public
title: Humans choose representatives who enforce cooperation in social dilemmas through
  extortion
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2016'
...
