---
_id: '1599'
abstract:
- lang: eng
  text: "The addition of polysialic acid to N- and/or O-linked glycans, referred to
    as polysialylation, is a rare posttranslational modification that is mainly known
    to control the developmental plasticity of the nervous system. Here we show that
    CCR7, the central chemokine receptor controlling immune cell trafficking to secondary
    lymphatic organs, carries polysialic acid. This modification is essential for
    the recognition of the CCR7 ligand CCL21. As a consequence, dendritic cell trafficking
    is abrogated in polysialyltransferase-deficient mice, manifesting as disturbed
    lymph node homeostasis and unresponsiveness to inflammatory stimuli. Structure-function
    analysis of chemokine-receptor interactions reveals that CCL21 adopts an autoinhibited
    conformation, which is released upon interaction with polysialic acid. Thus, we
    describe a glycosylation-mediated immune cell trafficking disorder and its mechanistic
    basis.\r\n"
acknowledged_ssus:
- _id: SSU
acknowledgement: 'We thank S. Schüchner and E. Ogris for kindly providing the antibody
  to GFP, M. Helmbrecht and A. Huber for providing Nrp2−/− mice, the IST Scientific
  Support Facilities for excellent services, and J. Renkawitz and K. Vaahtomeri for
  critically reading the manuscript. '
article_processing_charge: No
article_type: original
author:
- first_name: Eva
  full_name: Kiermaier, Eva
  id: 3EB04B78-F248-11E8-B48F-1D18A9856A87
  last_name: Kiermaier
  orcid: 0000-0001-6165-5738
- first_name: Christine
  full_name: Moussion, Christine
  id: 3356F664-F248-11E8-B48F-1D18A9856A87
  last_name: Moussion
- first_name: Christopher
  full_name: Veldkamp, Christopher
  last_name: Veldkamp
- first_name: Rita
  full_name: Gerardy  Schahn, Rita
  last_name: Gerardy  Schahn
- first_name: Ingrid
  full_name: De Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: De Vries
- first_name: Larry
  full_name: Williams, Larry
  last_name: Williams
- first_name: Gary
  full_name: Chaffee, Gary
  last_name: Chaffee
- first_name: Andrew
  full_name: Phillips, Andrew
  last_name: Phillips
- first_name: Friedrich
  full_name: Freiberger, Friedrich
  last_name: Freiberger
- first_name: Richard
  full_name: Imre, Richard
  last_name: Imre
- first_name: Deni
  full_name: Taleski, Deni
  last_name: Taleski
- first_name: Richard
  full_name: Payne, Richard
  last_name: Payne
- first_name: Asolina
  full_name: Braun, Asolina
  last_name: Braun
- first_name: Reinhold
  full_name: Förster, Reinhold
  last_name: Förster
- first_name: Karl
  full_name: Mechtler, Karl
  last_name: Mechtler
- first_name: Martina
  full_name: Mühlenhoff, Martina
  last_name: Mühlenhoff
- first_name: Brian
  full_name: Volkman, Brian
  last_name: Volkman
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Kiermaier E, Moussion C, Veldkamp C, et al. Polysialylation controls dendritic
    cell trafficking by regulating chemokine recognition. <i>Science</i>. 2016;351(6269):186-190.
    doi:<a href="https://doi.org/10.1126/science.aad0512">10.1126/science.aad0512</a>
  apa: Kiermaier, E., Moussion, C., Veldkamp, C., Gerardy  Schahn, R., de Vries, I.,
    Williams, L., … Sixt, M. K. (2016). Polysialylation controls dendritic cell trafficking
    by regulating chemokine recognition. <i>Science</i>. American Association for
    the Advancement of Science. <a href="https://doi.org/10.1126/science.aad0512">https://doi.org/10.1126/science.aad0512</a>
  chicago: Kiermaier, Eva, Christine Moussion, Christopher Veldkamp, Rita Gerardy 
    Schahn, Ingrid de Vries, Larry Williams, Gary Chaffee, et al. “Polysialylation
    Controls Dendritic Cell Trafficking by Regulating Chemokine Recognition.” <i>Science</i>.
    American Association for the Advancement of Science, 2016. <a href="https://doi.org/10.1126/science.aad0512">https://doi.org/10.1126/science.aad0512</a>.
  ieee: E. Kiermaier <i>et al.</i>, “Polysialylation controls dendritic cell trafficking
    by regulating chemokine recognition,” <i>Science</i>, vol. 351, no. 6269. American
    Association for the Advancement of Science, pp. 186–190, 2016.
  ista: Kiermaier E, Moussion C, Veldkamp C, Gerardy  Schahn R, de Vries I, Williams
    L, Chaffee G, Phillips A, Freiberger F, Imre R, Taleski D, Payne R, Braun A, Förster
    R, Mechtler K, Mühlenhoff M, Volkman B, Sixt MK. 2016. Polysialylation controls
    dendritic cell trafficking by regulating chemokine recognition. Science. 351(6269),
    186–190.
  mla: Kiermaier, Eva, et al. “Polysialylation Controls Dendritic Cell Trafficking
    by Regulating Chemokine Recognition.” <i>Science</i>, vol. 351, no. 6269, American
    Association for the Advancement of Science, 2016, pp. 186–90, doi:<a href="https://doi.org/10.1126/science.aad0512">10.1126/science.aad0512</a>.
  short: E. Kiermaier, C. Moussion, C. Veldkamp, R. Gerardy  Schahn, I. de Vries,
    L. Williams, G. Chaffee, A. Phillips, F. Freiberger, R. Imre, D. Taleski, R. Payne,
    A. Braun, R. Förster, K. Mechtler, M. Mühlenhoff, B. Volkman, M.K. Sixt, Science
    351 (2016) 186–190.
date_created: 2018-12-11T11:52:57Z
date_published: 2016-01-08T00:00:00Z
date_updated: 2021-01-12T06:51:52Z
day: '08'
department:
- _id: MiSi
doi: 10.1126/science.aad0512
ec_funded: 1
external_id:
  pmid:
  - '26657283'
intvolume: '       351'
issue: '6269'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5583642/
month: '01'
oa: 1
oa_version: Submitted Version
page: 186 - 190
pmid: 1
project:
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281556'
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
    (EU)
- _id: 25A76F58-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '289720'
  name: Stromal Cell-immune Cell Interactions in Health and Disease
- _id: 25A8E5EA-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Y 564-B12
  name: Cytoskeletal force generation and transduction of leukocytes (FWF)
publication: Science
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '5570'
quality_controlled: '1'
scopus_import: 1
status: public
title: Polysialylation controls dendritic cell trafficking by regulating chemokine
  recognition
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 351
year: '2016'
...
---
_id: '1608'
abstract:
- lang: eng
  text: 'We show that the Anderson model has a transition from localization to delocalization
    at exactly 2 dimensional growth rate on antitrees with normalized edge weights
    which are certain discrete graphs. The kinetic part has a one-dimensional structure
    allowing a description through transfer matrices which involve some Schur complement.
    For such operators we introduce the notion of having one propagating channel and
    extend theorems from the theory of one-dimensional Jacobi operators that relate
    the behavior of transfer matrices with the spectrum. These theorems are then applied
    to the considered model. In essence, in a certain energy region the kinetic part
    averages the random potentials along shells and the transfer matrices behave similar
    as for a one-dimensional operator with random potential of decaying variance.
    At d dimensional growth for d&gt;2 this effective decay is strong enough to obtain
    absolutely continuous spectrum, whereas for some uniform d dimensional growth
    with d&lt;2 one has pure point spectrum in this energy region. At exactly uniform
    2 dimensional growth also some singular continuous spectrum appears, at least
    at small disorder. As a corollary we also obtain a change from singular spectrum
    (d≤2) to absolutely continuous spectrum (d≥3) for random operators of the type
    rΔdr+λ on ℤd, where r is an orthogonal radial projection, Δd the discrete
    adjacency operator (Laplacian) on ℤd and λ a random potential. '
author:
- first_name: Christian
  full_name: Sadel, Christian
  id: 4760E9F8-F248-11E8-B48F-1D18A9856A87
  last_name: Sadel
  orcid: 0000-0001-8255-3968
citation:
  ama: Sadel C. Anderson transition at 2 dimensional growth rate on antitrees and
    spectral theory for operators with one propagating channel. <i>Annales Henri Poincare</i>.
    2016;17(7):1631-1675. doi:<a href="https://doi.org/10.1007/s00023-015-0456-3">10.1007/s00023-015-0456-3</a>
  apa: Sadel, C. (2016). Anderson transition at 2 dimensional growth rate on antitrees
    and spectral theory for operators with one propagating channel. <i>Annales Henri
    Poincare</i>. Birkhäuser. <a href="https://doi.org/10.1007/s00023-015-0456-3">https://doi.org/10.1007/s00023-015-0456-3</a>
  chicago: Sadel, Christian. “Anderson Transition at 2 Dimensional Growth Rate on
    Antitrees and Spectral Theory for Operators with One Propagating Channel.” <i>Annales
    Henri Poincare</i>. Birkhäuser, 2016. <a href="https://doi.org/10.1007/s00023-015-0456-3">https://doi.org/10.1007/s00023-015-0456-3</a>.
  ieee: C. Sadel, “Anderson transition at 2 dimensional growth rate on antitrees and
    spectral theory for operators with one propagating channel,” <i>Annales Henri
    Poincare</i>, vol. 17, no. 7. Birkhäuser, pp. 1631–1675, 2016.
  ista: Sadel C. 2016. Anderson transition at 2 dimensional growth rate on antitrees
    and spectral theory for operators with one propagating channel. Annales Henri
    Poincare. 17(7), 1631–1675.
  mla: Sadel, Christian. “Anderson Transition at 2 Dimensional Growth Rate on Antitrees
    and Spectral Theory for Operators with One Propagating Channel.” <i>Annales Henri
    Poincare</i>, vol. 17, no. 7, Birkhäuser, 2016, pp. 1631–75, doi:<a href="https://doi.org/10.1007/s00023-015-0456-3">10.1007/s00023-015-0456-3</a>.
  short: C. Sadel, Annales Henri Poincare 17 (2016) 1631–1675.
date_created: 2018-12-11T11:53:00Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2021-01-12T06:51:58Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s00023-015-0456-3
ec_funded: 1
intvolume: '        17'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1501.04287
month: '07'
oa: 1
oa_version: Preprint
page: 1631 - 1675
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Annales Henri Poincare
publication_status: published
publisher: Birkhäuser
publist_id: '5558'
quality_controlled: '1'
scopus_import: 1
status: public
title: Anderson transition at 2 dimensional growth rate on antitrees and spectral
  theory for operators with one propagating channel
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2016'
...
---
_id: '1612'
abstract:
- lang: eng
  text: We prove that whenever A is a 3-conservative relational structure with only
    binary and unary relations,then the algebra of polymorphisms of A either has no
    Taylor operation (i.e.,CSP(A)is NP-complete),or it generates an SD(∧) variety
    (i.e.,CSP(A)has bounded width).
author:
- first_name: Alexandr
  full_name: Kazda, Alexandr
  id: 3B32BAA8-F248-11E8-B48F-1D18A9856A87
  last_name: Kazda
citation:
  ama: Kazda A. CSP for binary conservative relational structures. <i>Algebra Universalis</i>.
    2016;75(1):75-84. doi:<a href="https://doi.org/10.1007/s00012-015-0358-8">10.1007/s00012-015-0358-8</a>
  apa: Kazda, A. (2016). CSP for binary conservative relational structures. <i>Algebra
    Universalis</i>. Springer. <a href="https://doi.org/10.1007/s00012-015-0358-8">https://doi.org/10.1007/s00012-015-0358-8</a>
  chicago: Kazda, Alexandr. “CSP for Binary Conservative Relational Structures.” <i>Algebra
    Universalis</i>. Springer, 2016. <a href="https://doi.org/10.1007/s00012-015-0358-8">https://doi.org/10.1007/s00012-015-0358-8</a>.
  ieee: A. Kazda, “CSP for binary conservative relational structures,” <i>Algebra
    Universalis</i>, vol. 75, no. 1. Springer, pp. 75–84, 2016.
  ista: Kazda A. 2016. CSP for binary conservative relational structures. Algebra
    Universalis. 75(1), 75–84.
  mla: Kazda, Alexandr. “CSP for Binary Conservative Relational Structures.” <i>Algebra
    Universalis</i>, vol. 75, no. 1, Springer, 2016, pp. 75–84, doi:<a href="https://doi.org/10.1007/s00012-015-0358-8">10.1007/s00012-015-0358-8</a>.
  short: A. Kazda, Algebra Universalis 75 (2016) 75–84.
date_created: 2018-12-11T11:53:01Z
date_published: 2016-02-01T00:00:00Z
date_updated: 2021-01-12T06:52:00Z
day: '01'
department:
- _id: VlKo
doi: 10.1007/s00012-015-0358-8
intvolume: '        75'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1112.1099
month: '02'
oa: 1
oa_version: Preprint
page: 75 - 84
publication: Algebra Universalis
publication_status: published
publisher: Springer
publist_id: '5554'
quality_controlled: '1'
scopus_import: 1
status: public
title: CSP for binary conservative relational structures
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 75
year: '2016'
...
---
_id: '1613'
abstract:
- lang: eng
  text: "In the last decade, induced pluripotent stem (iPS) cells have revolutionized
    the utility of human in vitro models of neurological disease. The iPS-derived
    and differentiated cells allow researchers to study the impact of a distinct cell
    type in health and disease as well as performing therapeutic drug screens on a
    human genetic background. In particular, clinical trials for Alzheimer's disease
    (AD) have been often failing. Two of the potential reasons are first, the species
    gap involved in proceeding from initial discoveries in rodent models to human
    studies, and second, an unsatisfying patient stratification, meaning subgrouping
    patients based on the disease severity due to the lack of phenotypic and genetic
    markers. iPS cells overcome this obstacles and will improve our understanding
    of disease subtypes in AD. They allow researchers conducting in depth characterization
    of neural cells from both familial and sporadic AD patients as well as preclinical
    screens on human cells.\r\n\r\nIn this review, we briefly outline the status quo
    of iPS cell research in neurological diseases along with the general advantages
    and pitfalls of these models. We summarize how genome-editing techniques such
    as CRISPR/Cas will allow researchers to reduce the problem of genomic variability
    inherent to human studies, followed by recent iPS cell studies relevant to AD.
    We then focus on current techniques for the differentiation of iPS cells into
    neural cell types that are relevant to AD research. Finally, we discuss how the
    generation of three-dimensional cell culture systems will be important for understanding
    AD phenotypes in a complex cellular milieu, and how both two- and three-dimensional
    iPS cell models can provide platforms for drug discovery and translational studies
    into the treatment of AD."
acknowledgement: This work was supported by NIH grant R01-AG047661 to LHT. The art
  in Fig. 1 was created by Julian Wong.
author:
- first_name: Alison
  full_name: Mungenast, Alison
  last_name: Mungenast
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
- first_name: Li
  full_name: Tsai, Li
  last_name: Tsai
citation:
  ama: Mungenast A, Siegert S, Tsai L. Modeling Alzheimer’s disease with human induced
    pluripotent stem (iPS) cells. <i>Molecular and Cellular Neuroscience</i>. 2016;73:13-31.
    doi:<a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">doi:10.1016/j.mcn.2015.11.010</a>
  apa: Mungenast, A., Siegert, S., &#38; Tsai, L. (2016). Modeling Alzheimer’s disease
    with human induced pluripotent stem (iPS) cells. <i>Molecular and Cellular Neuroscience</i>.
    Academic Press. <a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">https://doi.org/doi:10.1016/j.mcn.2015.11.010</a>
  chicago: Mungenast, Alison, Sandra Siegert, and Li Tsai. “Modeling Alzheimer’s Disease
    with Human Induced Pluripotent Stem (IPS) Cells.” <i>Molecular and Cellular Neuroscience</i>.
    Academic Press, 2016. <a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">https://doi.org/doi:10.1016/j.mcn.2015.11.010</a>.
  ieee: A. Mungenast, S. Siegert, and L. Tsai, “Modeling Alzheimer’s disease with
    human induced pluripotent stem (iPS) cells,” <i>Molecular and Cellular Neuroscience</i>,
    vol. 73. Academic Press, pp. 13–31, 2016.
  ista: Mungenast A, Siegert S, Tsai L. 2016. Modeling Alzheimer’s disease with human
    induced pluripotent stem (iPS) cells. Molecular and Cellular Neuroscience. 73,
    13–31.
  mla: Mungenast, Alison, et al. “Modeling Alzheimer’s Disease with Human Induced
    Pluripotent Stem (IPS) Cells.” <i>Molecular and Cellular Neuroscience</i>, vol.
    73, Academic Press, 2016, pp. 13–31, doi:<a href="https://doi.org/doi:10.1016/j.mcn.2015.11.010">doi:10.1016/j.mcn.2015.11.010</a>.
  short: A. Mungenast, S. Siegert, L. Tsai, Molecular and Cellular Neuroscience 73
    (2016) 13–31.
date_created: 2018-12-11T11:53:02Z
date_published: 2016-06-01T00:00:00Z
date_updated: 2021-01-12T06:52:00Z
day: '01'
ddc:
- '616'
doi: doi:10.1016/j.mcn.2015.11.010
extern: '1'
file:
- access_level: open_access
  checksum: 620254114e04d5d6e7f37d15e4b8ace4
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:50Z
  date_updated: 2020-07-14T12:45:07Z
  file_id: '4970'
  file_name: IST-2018-979-v1+1_Mungenast_2015_acceptedManuscript.pdf
  file_size: 632915
  relation: main_file
file_date_updated: 2020-07-14T12:45:07Z
has_accepted_license: '1'
intvolume: '        73'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 13 - 31
publication: Molecular and Cellular Neuroscience
publication_status: published
publisher: Academic Press
publist_id: '5553'
pubrep_id: '979'
quality_controlled: '1'
status: public
title: Modeling Alzheimer's disease with human induced pluripotent stem (iPS) cells
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 73
year: '2016'
...
---
_id: '1616'
abstract:
- lang: eng
  text: The hippocampus plays a key role in learning and memory. Previous studies
    suggested that the main types of principal neurons, dentate gyrus granule cells
    (GCs), CA3 pyramidal neurons, and CA1 pyramidal neurons, differ in their activity
    pattern, with sparse firing in GCs and more frequent firing in CA3 and CA1 pyramidal
    neurons. It has been assumed but never shown that such different activity may
    be caused by differential synaptic excitation. To test this hypothesis, we performed
    high-resolution whole-cell patch-clamp recordings in anesthetized rats in vivo.
    In contrast to previous in vitro data, both CA3 and CA1 pyramidal neurons fired
    action potentials spontaneously, with a frequency of ∼3–6 Hz, whereas GCs were
    silent. Furthermore, both CA3 and CA1 cells primarily fired in bursts. To determine
    the underlying mechanisms, we quantitatively assessed the frequency of spontaneous
    excitatory synaptic input, the passive membrane properties, and the active membrane
    characteristics. Surprisingly, GCs showed comparable synaptic excitation to CA3
    and CA1 cells and the highest ratio of excitation versus hyperpolarizing inhibition.
    Thus, differential synaptic excitation is not responsible for differences in firing.
    Moreover, the three types of hippocampal neurons markedly differed in their passive
    properties. While GCs showed the most negative membrane potential, CA3 pyramidal
    neurons had the highest input resistance and the slowest membrane time constant.
    The three types of neurons also differed in the active membrane characteristics.
    GCs showed the highest action potential threshold, but displayed the largest gain
    of the input-output curves. In conclusion, our results reveal that differential
    firing of the three main types of hippocampal principal neurons in vivo is not
    primarily caused by differences in the characteristics of the synaptic input,
    but by the distinct properties of synaptic integration and input-output transformation.
acknowledgement: "The authors thank Jose Guzman for critically reading prior versions
  of the manuscript. They also thank T. Asenov for\r\nengineering mechanical devices,
  A. Schlögl for efﬁcient pro-gramming, F. Marr for technical assistance, and E. Kramberger
  for manuscript editing."
article_processing_charge: No
author:
- first_name: Janina
  full_name: Kowalski, Janina
  id: 3F3CA136-F248-11E8-B48F-1D18A9856A87
  last_name: Kowalski
- first_name: Jian
  full_name: Gan, Jian
  id: 3614E438-F248-11E8-B48F-1D18A9856A87
  last_name: Gan
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Alejandro
  full_name: Pernia-Andrade, Alejandro
  id: 36963E98-F248-11E8-B48F-1D18A9856A87
  last_name: Pernia-Andrade
citation:
  ama: Kowalski J, Gan J, Jonas PM, Pernia-Andrade A. Intrinsic membrane properties
    determine hippocampal differential firing pattern in vivo in anesthetized rats.
    <i>Hippocampus</i>. 2016;26(5):668-682. doi:<a href="https://doi.org/10.1002/hipo.22550">10.1002/hipo.22550</a>
  apa: Kowalski, J., Gan, J., Jonas, P. M., &#38; Pernia-Andrade, A. (2016). Intrinsic
    membrane properties determine hippocampal differential firing pattern in vivo
    in anesthetized rats. <i>Hippocampus</i>. Wiley. <a href="https://doi.org/10.1002/hipo.22550">https://doi.org/10.1002/hipo.22550</a>
  chicago: Kowalski, Janina, Jian Gan, Peter M Jonas, and Alejandro Pernia-Andrade.
    “Intrinsic Membrane Properties Determine Hippocampal Differential Firing Pattern
    in Vivo in Anesthetized Rats.” <i>Hippocampus</i>. Wiley, 2016. <a href="https://doi.org/10.1002/hipo.22550">https://doi.org/10.1002/hipo.22550</a>.
  ieee: J. Kowalski, J. Gan, P. M. Jonas, and A. Pernia-Andrade, “Intrinsic membrane
    properties determine hippocampal differential firing pattern in vivo in anesthetized
    rats,” <i>Hippocampus</i>, vol. 26, no. 5. Wiley, pp. 668–682, 2016.
  ista: Kowalski J, Gan J, Jonas PM, Pernia-Andrade A. 2016. Intrinsic membrane properties
    determine hippocampal differential firing pattern in vivo in anesthetized rats.
    Hippocampus. 26(5), 668–682.
  mla: Kowalski, Janina, et al. “Intrinsic Membrane Properties Determine Hippocampal
    Differential Firing Pattern in Vivo in Anesthetized Rats.” <i>Hippocampus</i>,
    vol. 26, no. 5, Wiley, 2016, pp. 668–82, doi:<a href="https://doi.org/10.1002/hipo.22550">10.1002/hipo.22550</a>.
  short: J. Kowalski, J. Gan, P.M. Jonas, A. Pernia-Andrade, Hippocampus 26 (2016)
    668–682.
date_created: 2018-12-11T11:53:03Z
date_published: 2016-05-01T00:00:00Z
date_updated: 2023-10-17T10:02:02Z
day: '01'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1002/hipo.22550
file:
- access_level: open_access
  checksum: 284b72b12fbe15474833ed3d4549f86b
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:47Z
  date_updated: 2020-07-14T12:45:07Z
  file_id: '5033'
  file_name: IST-2016-469-v1+1_Kowalski_et_al-Hippocampus.pdf
  file_size: 905348
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file_date_updated: 2020-07-14T12:45:07Z
has_accepted_license: '1'
intvolume: '        26'
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 668 - 682
publication: Hippocampus
publication_identifier:
  eissn:
  - 1098-1063
  issn:
  - 1050-9631
publication_status: published
publisher: Wiley
publist_id: '5550'
pubrep_id: '469'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Intrinsic membrane properties determine hippocampal differential firing pattern
  in vivo in anesthetized rats
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2016'
...
---
_id: '1617'
abstract:
- lang: eng
  text: 'We study the discrepancy of jittered sampling sets: such a set P⊂ [0,1]d
    is generated for fixed m∈ℕ by partitioning [0,1]d into md axis aligned cubes of
    equal measure and placing a random point inside each of the N=md cubes. We prove
    that, for N sufficiently large, 1/10 d/N1/2+1/2d ≤EDN∗(P)≤ √d(log N) 1/2/N1/2+1/2d,
    where the upper bound with an unspecified constant Cd was proven earlier by Beck.
    Our proof makes crucial use of the sharp Dvoretzky-Kiefer-Wolfowitz inequality
    and a suitably taylored Bernstein inequality; we have reasons to believe that
    the upper bound has the sharp scaling in N. Additional heuristics suggest that
    jittered sampling should be able to improve known bounds on the inverse of the
    star-discrepancy in the regime N≳dd. We also prove a partition principle showing
    that every partition of [0,1]d combined with a jittered sampling construction
    gives rise to a set whose expected squared L2-discrepancy is smaller than that
    of purely random points.'
acknowledgement: We are grateful to the referee whose suggestions greatly improved
  the quality and clarity of the exposition.
author:
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
- first_name: Stefan
  full_name: Steinerberger, Stefan
  last_name: Steinerberger
citation:
  ama: Pausinger F, Steinerberger S. On the discrepancy of jittered sampling. <i>Journal
    of Complexity</i>. 2016;33:199-216. doi:<a href="https://doi.org/10.1016/j.jco.2015.11.003">10.1016/j.jco.2015.11.003</a>
  apa: Pausinger, F., &#38; Steinerberger, S. (2016). On the discrepancy of jittered
    sampling. <i>Journal of Complexity</i>. Academic Press. <a href="https://doi.org/10.1016/j.jco.2015.11.003">https://doi.org/10.1016/j.jco.2015.11.003</a>
  chicago: Pausinger, Florian, and Stefan Steinerberger. “On the Discrepancy of Jittered
    Sampling.” <i>Journal of Complexity</i>. Academic Press, 2016. <a href="https://doi.org/10.1016/j.jco.2015.11.003">https://doi.org/10.1016/j.jco.2015.11.003</a>.
  ieee: F. Pausinger and S. Steinerberger, “On the discrepancy of jittered sampling,”
    <i>Journal of Complexity</i>, vol. 33. Academic Press, pp. 199–216, 2016.
  ista: Pausinger F, Steinerberger S. 2016. On the discrepancy of jittered sampling.
    Journal of Complexity. 33, 199–216.
  mla: Pausinger, Florian, and Stefan Steinerberger. “On the Discrepancy of Jittered
    Sampling.” <i>Journal of Complexity</i>, vol. 33, Academic Press, 2016, pp. 199–216,
    doi:<a href="https://doi.org/10.1016/j.jco.2015.11.003">10.1016/j.jco.2015.11.003</a>.
  short: F. Pausinger, S. Steinerberger, Journal of Complexity 33 (2016) 199–216.
date_created: 2018-12-11T11:53:03Z
date_published: 2016-04-01T00:00:00Z
date_updated: 2021-01-12T06:52:02Z
day: '01'
department:
- _id: HeEd
doi: 10.1016/j.jco.2015.11.003
intvolume: '        33'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1510.00251
month: '04'
oa: 1
oa_version: Submitted Version
page: 199 - 216
publication: Journal of Complexity
publication_status: published
publisher: Academic Press
publist_id: '5549'
quality_controlled: '1'
scopus_import: 1
status: public
title: On the discrepancy of jittered sampling
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2016'
...
---
_id: '1620'
abstract:
- lang: eng
  text: We consider the Bardeen–Cooper–Schrieffer free energy functional for particles
    interacting via a two-body potential on a microscopic scale and in the presence
    of weak external fields varying on a macroscopic scale. We study the influence
    of the external fields on the critical temperature. We show that in the limit
    where the ratio between the microscopic and macroscopic scale tends to zero, the
    next to leading order of the critical temperature is determined by the lowest
    eigenvalue of the linearization of the Ginzburg–Landau equation.
acknowledgement: The authors are grateful to I. M. Sigal for useful discussions. Financial
  support from the US National Science Foundation through Grants PHY-1347399 and DMS-1363432
  (R.L.F.), from the Danish council for independent research and from ERC Advanced
  Grant 321029 (J.P.S.) is acknowledged.
author:
- first_name: Rupert
  full_name: Frank, Rupert
  last_name: Frank
- first_name: Christian
  full_name: Hainzl, Christian
  last_name: Hainzl
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
- first_name: Jan
  full_name: Solovej, Jan
  last_name: Solovej
citation:
  ama: Frank R, Hainzl C, Seiringer R, Solovej J. The external field dependence of
    the BCS critical temperature. <i>Communications in Mathematical Physics</i>. 2016;342(1):189-216.
    doi:<a href="https://doi.org/10.1007/s00220-015-2526-2">10.1007/s00220-015-2526-2</a>
  apa: Frank, R., Hainzl, C., Seiringer, R., &#38; Solovej, J. (2016). The external
    field dependence of the BCS critical temperature. <i>Communications in Mathematical
    Physics</i>. Springer. <a href="https://doi.org/10.1007/s00220-015-2526-2">https://doi.org/10.1007/s00220-015-2526-2</a>
  chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “The
    External Field Dependence of the BCS Critical Temperature.” <i>Communications
    in Mathematical Physics</i>. Springer, 2016. <a href="https://doi.org/10.1007/s00220-015-2526-2">https://doi.org/10.1007/s00220-015-2526-2</a>.
  ieee: R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “The external field dependence
    of the BCS critical temperature,” <i>Communications in Mathematical Physics</i>,
    vol. 342, no. 1. Springer, pp. 189–216, 2016.
  ista: Frank R, Hainzl C, Seiringer R, Solovej J. 2016. The external field dependence
    of the BCS critical temperature. Communications in Mathematical Physics. 342(1),
    189–216.
  mla: Frank, Rupert, et al. “The External Field Dependence of the BCS Critical Temperature.”
    <i>Communications in Mathematical Physics</i>, vol. 342, no. 1, Springer, 2016,
    pp. 189–216, doi:<a href="https://doi.org/10.1007/s00220-015-2526-2">10.1007/s00220-015-2526-2</a>.
  short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, Communications in Mathematical
    Physics 342 (2016) 189–216.
date_created: 2018-12-11T11:53:04Z
date_published: 2016-02-01T00:00:00Z
date_updated: 2021-01-12T06:52:03Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s00220-015-2526-2
intvolume: '       342'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1410.2352
month: '02'
oa: 1
oa_version: Submitted Version
page: 189 - 216
publication: Communications in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '5546'
quality_controlled: '1'
scopus_import: 1
status: public
title: The external field dependence of the BCS critical temperature
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 342
year: '2016'
...
---
_id: '1622'
abstract:
- lang: eng
  text: We prove analogues of the Lieb–Thirring and Hardy–Lieb–Thirring inequalities
    for many-body quantum systems with fractional kinetic operators and homogeneous
    interaction potentials, where no anti-symmetry on the wave functions is assumed.
    These many-body inequalities imply interesting one-body interpolation inequalities,
    and we show that the corresponding one- and many-body inequalities are actually
    equivalent in certain cases.
acknowledgement: "We thank Jan  Philip  Solovej, Robert Seiringer and Vladimir Maz’ya
  for helpful discussions, as well as Rupert Frank\r\nand the anonymous referee for
  useful comments. Part of this work has been carried out during a visit at the Institut
  Mittag-Leffler (Stockholm). D.L. acknowledges financial support by the grant KAW
  2010.0063 from the Knut and Alice Wallenberg Foundation and the Swedish Research
  Council grant no. 2013-4734. P.T.N. is supported by the People Programme (Marie
  Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013)
  under REA grant agreement no. 291734. F.P. acknowledges support from the ERC project
  no. 321029 “The\r\nmathematics of the structure of matter”."
author:
- first_name: Douglas
  full_name: Lundholm, Douglas
  last_name: Lundholm
- first_name: Phan
  full_name: Nam, Phan
  id: 404092F4-F248-11E8-B48F-1D18A9856A87
  last_name: Nam
- first_name: Fabian
  full_name: Portmann, Fabian
  last_name: Portmann
citation:
  ama: Lundholm D, Nam P, Portmann F. Fractional Hardy–Lieb–Thirring and related Inequalities
    for interacting systems. <i>Archive for Rational Mechanics and Analysis</i>. 2016;219(3):1343-1382.
    doi:<a href="https://doi.org/10.1007/s00205-015-0923-5">10.1007/s00205-015-0923-5</a>
  apa: Lundholm, D., Nam, P., &#38; Portmann, F. (2016). Fractional Hardy–Lieb–Thirring
    and related Inequalities for interacting systems. <i>Archive for Rational Mechanics
    and Analysis</i>. Springer. <a href="https://doi.org/10.1007/s00205-015-0923-5">https://doi.org/10.1007/s00205-015-0923-5</a>
  chicago: Lundholm, Douglas, Phan Nam, and Fabian Portmann. “Fractional Hardy–Lieb–Thirring
    and Related Inequalities for Interacting Systems.” <i>Archive for Rational Mechanics
    and Analysis</i>. Springer, 2016. <a href="https://doi.org/10.1007/s00205-015-0923-5">https://doi.org/10.1007/s00205-015-0923-5</a>.
  ieee: D. Lundholm, P. Nam, and F. Portmann, “Fractional Hardy–Lieb–Thirring and
    related Inequalities for interacting systems,” <i>Archive for Rational Mechanics
    and Analysis</i>, vol. 219, no. 3. Springer, pp. 1343–1382, 2016.
  ista: Lundholm D, Nam P, Portmann F. 2016. Fractional Hardy–Lieb–Thirring and related
    Inequalities for interacting systems. Archive for Rational Mechanics and Analysis.
    219(3), 1343–1382.
  mla: Lundholm, Douglas, et al. “Fractional Hardy–Lieb–Thirring and Related Inequalities
    for Interacting Systems.” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 219, no. 3, Springer, 2016, pp. 1343–82, doi:<a href="https://doi.org/10.1007/s00205-015-0923-5">10.1007/s00205-015-0923-5</a>.
  short: D. Lundholm, P. Nam, F. Portmann, Archive for Rational Mechanics and Analysis
    219 (2016) 1343–1382.
date_created: 2018-12-11T11:53:05Z
date_published: 2016-03-01T00:00:00Z
date_updated: 2021-01-12T06:52:04Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s00205-015-0923-5
ec_funded: 1
intvolume: '       219'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1501.04570
month: '03'
oa: 1
oa_version: Submitted Version
page: 1343 - 1382
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Archive for Rational Mechanics and Analysis
publication_status: published
publisher: Springer
publist_id: '5542'
quality_controlled: '1'
scopus_import: 1
status: public
title: Fractional Hardy–Lieb–Thirring and related Inequalities for interacting systems
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 219
year: '2016'
...
---
_id: '1631'
abstract:
- lang: eng
  text: 'Ancestral processes are fundamental to modern population genetics and spatial
    structure has been the subject of intense interest for many years. Despite this
    interest, almost nothing is known about the distribution of the locations of pedigree
    or genetic ancestors. Using both spatially continuous and stepping-stone models,
    we show that the distribution of pedigree ancestors approaches a travelling wave,
    for which we develop two alternative approximations. The speed and width of the
    wave are sensitive to the local details of the model. After a short time, genetic
    ancestors spread far more slowly than pedigree ancestors, ultimately diffusing
    out with radius ## rather than spreading at constant speed. In contrast to the
    wave of pedigree ancestors, the spread of genetic ancestry is insensitive to the
    local details of the models.'
author:
- first_name: Jerome
  full_name: Kelleher, Jerome
  last_name: Kelleher
- first_name: Alison
  full_name: Etheridge, Alison
  last_name: Etheridge
- first_name: Amandine
  full_name: Véber, Amandine
  last_name: Véber
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Kelleher J, Etheridge A, Véber A, Barton NH. Spread of pedigree versus genetic
    ancestry in spatially distributed populations. <i>Theoretical Population Biology</i>.
    2016;108:1-12. doi:<a href="https://doi.org/10.1016/j.tpb.2015.10.008">10.1016/j.tpb.2015.10.008</a>
  apa: Kelleher, J., Etheridge, A., Véber, A., &#38; Barton, N. H. (2016). Spread
    of pedigree versus genetic ancestry in spatially distributed populations. <i>Theoretical
    Population Biology</i>. Academic Press. <a href="https://doi.org/10.1016/j.tpb.2015.10.008">https://doi.org/10.1016/j.tpb.2015.10.008</a>
  chicago: Kelleher, Jerome, Alison Etheridge, Amandine Véber, and Nicholas H Barton.
    “Spread of Pedigree versus Genetic Ancestry in Spatially Distributed Populations.”
    <i>Theoretical Population Biology</i>. Academic Press, 2016. <a href="https://doi.org/10.1016/j.tpb.2015.10.008">https://doi.org/10.1016/j.tpb.2015.10.008</a>.
  ieee: J. Kelleher, A. Etheridge, A. Véber, and N. H. Barton, “Spread of pedigree
    versus genetic ancestry in spatially distributed populations,” <i>Theoretical
    Population Biology</i>, vol. 108. Academic Press, pp. 1–12, 2016.
  ista: Kelleher J, Etheridge A, Véber A, Barton NH. 2016. Spread of pedigree versus
    genetic ancestry in spatially distributed populations. Theoretical Population
    Biology. 108, 1–12.
  mla: Kelleher, Jerome, et al. “Spread of Pedigree versus Genetic Ancestry in Spatially
    Distributed Populations.” <i>Theoretical Population Biology</i>, vol. 108, Academic
    Press, 2016, pp. 1–12, doi:<a href="https://doi.org/10.1016/j.tpb.2015.10.008">10.1016/j.tpb.2015.10.008</a>.
  short: J. Kelleher, A. Etheridge, A. Véber, N.H. Barton, Theoretical Population
    Biology 108 (2016) 1–12.
date_created: 2018-12-11T11:53:08Z
date_published: 2016-04-01T00:00:00Z
date_updated: 2021-01-12T06:52:07Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1016/j.tpb.2015.10.008
ec_funded: 1
file:
- access_level: open_access
  checksum: 6a65ba187994d4ad86c1c509e0ff482a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:12Z
  date_updated: 2020-07-14T12:45:07Z
  file_id: '4865'
  file_name: IST-2016-465-v1+1_1-s2.0-S0040580915001094-main.pdf
  file_size: 1684043
  relation: main_file
file_date_updated: 2020-07-14T12:45:07Z
has_accepted_license: '1'
intvolume: '       108'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1 - 12
project:
- _id: 25B07788-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '250152'
  name: Limits to selection in biology and in evolutionary computation
publication: Theoretical Population Biology
publication_status: published
publisher: Academic Press
publist_id: '5524'
pubrep_id: '465'
quality_controlled: '1'
scopus_import: 1
status: public
title: Spread of pedigree versus genetic ancestry in spatially distributed populations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 108
year: '2016'
...
---
_id: '1641'
abstract:
- lang: eng
  text: The plant hormone auxin (indole-3-acetic acid) is a major regulator of plant
    growth and development including embryo and root patterning, lateral organ formation
    and growth responses to environmental stimuli. Auxin is directionally transported
    from cell to cell by the action of specific auxin influx [AUXIN-RESISTANT1 (AUX1)]
    and efflux [PIN-FORMED (PIN)] transport regulators, whose polar, subcellular localizations
    are aligned with the direction of the auxin flow. Auxin itself regulates its own
    transport by modulation of the expression and subcellular localization of the
    auxin transporters. Increased auxin levels promote the transcription of PIN2 and
    AUX1 genes as well as stabilize PIN proteins at the plasma membrane, whereas prolonged
    auxin exposure increases the turnover of PIN proteins and their degradation in
    the vacuole. In this study, we applied a forward genetic approach, to identify
    molecular components playing a role in the auxin-mediated degradation. We generated
    EMS-mutagenized Arabidopsis PIN2::PIN2:GFP, AUX1::AUX1:YFP eir1aux1 populations
    and designed a screen for mutants with persistently strong fluorescent signals
    of the tagged PIN2 and AUX1 after prolonged treatment with the synthetic auxin
    2,4-dichlorophenoxyacetic acid (2,4-D). This approach yielded novel auxin degradation
    mutants defective in trafficking and degradation of PIN2 and AUX1 proteins and
    established a role for auxin-mediated degradation in plant development.
acknowledgement: 'European Social Fund (CZ.1.07/2.3.00/20.0043) and the Czech Science
  Foundation GAČR (GA13-40637S) to JF. '
author:
- first_name: Radka
  full_name: Zemová, Radka
  last_name: Zemová
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Agnieszka
  full_name: Bielach, Agnieszka
  last_name: Bielach
- first_name: Hélène
  full_name: Robert, Hélène
  last_name: Robert
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zemová R, Zwiewka M, Bielach A, Robert H, Friml J. A forward genetic screen
    for new regulators of auxin mediated degradation of auxin transport proteins in
    Arabidopsis thaliana. <i>Journal of Plant Growth Regulation</i>. 2016;35(2):465-476.
    doi:<a href="https://doi.org/10.1007/s00344-015-9553-2">10.1007/s00344-015-9553-2</a>
  apa: Zemová, R., Zwiewka, M., Bielach, A., Robert, H., &#38; Friml, J. (2016). A
    forward genetic screen for new regulators of auxin mediated degradation of auxin
    transport proteins in Arabidopsis thaliana. <i>Journal of Plant Growth Regulation</i>.
    Springer. <a href="https://doi.org/10.1007/s00344-015-9553-2">https://doi.org/10.1007/s00344-015-9553-2</a>
  chicago: Zemová, Radka, Marta Zwiewka, Agnieszka Bielach, Hélène Robert, and Jiří
    Friml. “A Forward Genetic Screen for New Regulators of Auxin Mediated Degradation
    of Auxin Transport Proteins in Arabidopsis Thaliana.” <i>Journal of Plant Growth
    Regulation</i>. Springer, 2016. <a href="https://doi.org/10.1007/s00344-015-9553-2">https://doi.org/10.1007/s00344-015-9553-2</a>.
  ieee: R. Zemová, M. Zwiewka, A. Bielach, H. Robert, and J. Friml, “A forward genetic
    screen for new regulators of auxin mediated degradation of auxin transport proteins
    in Arabidopsis thaliana,” <i>Journal of Plant Growth Regulation</i>, vol. 35,
    no. 2. Springer, pp. 465–476, 2016.
  ista: Zemová R, Zwiewka M, Bielach A, Robert H, Friml J. 2016. A forward genetic
    screen for new regulators of auxin mediated degradation of auxin transport proteins
    in Arabidopsis thaliana. Journal of Plant Growth Regulation. 35(2), 465–476.
  mla: Zemová, Radka, et al. “A Forward Genetic Screen for New Regulators of Auxin
    Mediated Degradation of Auxin Transport Proteins in Arabidopsis Thaliana.” <i>Journal
    of Plant Growth Regulation</i>, vol. 35, no. 2, Springer, 2016, pp. 465–76, doi:<a
    href="https://doi.org/10.1007/s00344-015-9553-2">10.1007/s00344-015-9553-2</a>.
  short: R. Zemová, M. Zwiewka, A. Bielach, H. Robert, J. Friml, Journal of Plant
    Growth Regulation 35 (2016) 465–476.
date_created: 2018-12-11T11:53:12Z
date_published: 2016-06-01T00:00:00Z
date_updated: 2021-01-12T06:52:11Z
day: '01'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1007/s00344-015-9553-2
file:
- access_level: open_access
  checksum: 0dc6a300cde6536ceedd2bcdd2060efb
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:08:34Z
  date_updated: 2020-07-14T12:45:08Z
  file_id: '4695'
  file_name: IST-2018-1001-v1+1_Zemova_JPlantGrowthRegul_2016_proofs.pdf
  file_size: 5637591
  relation: main_file
file_date_updated: 2020-07-14T12:45:08Z
has_accepted_license: '1'
intvolume: '        35'
issue: '2'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Preprint
page: 465 - 476
publication: Journal of Plant Growth Regulation
publication_status: published
publisher: Springer
publist_id: '5512'
pubrep_id: '1001'
quality_controlled: '1'
scopus_import: 1
status: public
title: A forward genetic screen for new regulators of auxin mediated degradation of
  auxin transport proteins in Arabidopsis thaliana
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2016'
...
---
_id: '1653'
abstract:
- lang: eng
  text: "A somewhere statistically binding (SSB) hash, introduced by Hubáček and Wichs
    (ITCS ’15), can be used to hash a long string x to a short digest y = H hk (x)
    using a public hashing-key hk. Furthermore, there is a way to set up the hash
    key hk to make it statistically binding on some arbitrary hidden position i, meaning
    that: (1) the digest y completely determines the i’th bit (or symbol) of x so
    that all pre-images of y have the same value in the i’th position, (2) it is computationally
    infeasible to distinguish the position i on which hk is statistically binding
    from any other position i’. Lastly, the hash should have a local opening property
    analogous to Merkle-Tree hashing, meaning that given x and y = H hk (x) it should
    be possible to create a short proof π that certifies the value of the i’th bit
    (or symbol) of x without having to provide the entire input x. A similar primitive
    called a positional accumulator, introduced by Koppula, Lewko and Waters (STOC
    ’15) further supports dynamic updates of the hashed value. These tools, which
    are interesting in their own right, also serve as one of the main technical components
    in several recent works building advanced applications from indistinguishability
    obfuscation (iO).\r\n\r\nThe prior constructions of SSB hashing and positional
    accumulators required fully homomorphic encryption (FHE) and iO respectively.
    In this work, we give new constructions of these tools based on well studied number-theoretic
    assumptions such as DDH, Phi-Hiding and DCR, as well as a general construction
    from lossy/injective functions."
alternative_title:
- LNCS
author:
- first_name: Tatsuaki
  full_name: Okamoto, Tatsuaki
  last_name: Okamoto
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
- first_name: Brent
  full_name: Waters, Brent
  last_name: Waters
- first_name: Daniel
  full_name: Wichs, Daniel
  last_name: Wichs
citation:
  ama: 'Okamoto T, Pietrzak KZ, Waters B, Wichs D. New realizations of somewhere statistically
    binding hashing and positional accumulators. In: Vol 9452. Springer; 2016:121-145.
    doi:<a href="https://doi.org/10.1007/978-3-662-48797-6_6">10.1007/978-3-662-48797-6_6</a>'
  apa: 'Okamoto, T., Pietrzak, K. Z., Waters, B., &#38; Wichs, D. (2016). New realizations
    of somewhere statistically binding hashing and positional accumulators (Vol. 9452,
    pp. 121–145). Presented at the ASIACRYPT: Theory and Application of Cryptology
    and Information Security, Auckland, New Zealand: Springer. <a href="https://doi.org/10.1007/978-3-662-48797-6_6">https://doi.org/10.1007/978-3-662-48797-6_6</a>'
  chicago: Okamoto, Tatsuaki, Krzysztof Z Pietrzak, Brent Waters, and Daniel Wichs.
    “New Realizations of Somewhere Statistically Binding Hashing and Positional Accumulators,”
    9452:121–45. Springer, 2016. <a href="https://doi.org/10.1007/978-3-662-48797-6_6">https://doi.org/10.1007/978-3-662-48797-6_6</a>.
  ieee: 'T. Okamoto, K. Z. Pietrzak, B. Waters, and D. Wichs, “New realizations of
    somewhere statistically binding hashing and positional accumulators,” presented
    at the ASIACRYPT: Theory and Application of Cryptology and Information Security,
    Auckland, New Zealand, 2016, vol. 9452, pp. 121–145.'
  ista: 'Okamoto T, Pietrzak KZ, Waters B, Wichs D. 2016. New realizations of somewhere
    statistically binding hashing and positional accumulators. ASIACRYPT: Theory and
    Application of Cryptology and Information Security, LNCS, vol. 9452, 121–145.'
  mla: Okamoto, Tatsuaki, et al. <i>New Realizations of Somewhere Statistically Binding
    Hashing and Positional Accumulators</i>. Vol. 9452, Springer, 2016, pp. 121–45,
    doi:<a href="https://doi.org/10.1007/978-3-662-48797-6_6">10.1007/978-3-662-48797-6_6</a>.
  short: T. Okamoto, K.Z. Pietrzak, B. Waters, D. Wichs, in:, Springer, 2016, pp.
    121–145.
conference:
  end_date: 2015-12-03
  location: Auckland, New Zealand
  name: 'ASIACRYPT: Theory and Application of Cryptology and Information Security'
  start_date: 2015-11-29
date_created: 2018-12-11T11:53:16Z
date_published: 2016-01-08T00:00:00Z
date_updated: 2021-01-12T06:52:16Z
day: '08'
ddc:
- '000'
department:
- _id: KrPi
doi: 10.1007/978-3-662-48797-6_6
ec_funded: 1
file:
- access_level: open_access
  checksum: a57711cb660c5b17b42bb47275a00180
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:05Z
  date_updated: 2020-07-14T12:45:08Z
  file_id: '4923'
  file_name: IST-2016-677-v1+1_869.pdf
  file_size: 580088
  relation: main_file
file_date_updated: 2020-07-14T12:45:08Z
has_accepted_license: '1'
intvolume: '      9452'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 121 - 145
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '259668'
  name: Provable Security for Physical Cryptography
publication_status: published
publisher: Springer
publist_id: '5497'
pubrep_id: '677'
quality_controlled: '1'
scopus_import: 1
status: public
title: New realizations of somewhere statistically binding hashing and positional
  accumulators
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9452
year: '2016'
...
---
_id: '1662'
abstract:
- lang: eng
  text: We introduce a modification of the classic notion of intrinsic volume using
    persistence moments of height functions. Evaluating the modified first intrinsic
    volume on digital approximations of a compact body with smoothly embedded boundary
    in Rn, we prove convergence to the first intrinsic volume of the body as the resolution
    of the approximation improves. We have weaker results for the other modified intrinsic
    volumes, proving they converge to the corresponding intrinsic volumes of the n-dimensional
    unit ball.
acknowledgement: "This research is partially supported by the Toposys project FP7-ICT-318493-STREP,
  and by ESF under the ACAT Research Network Programme.\r\nBoth authors thank Anne
  Marie Svane for her comments on an early version of this paper. The second author
  wishes to thank Eva B. Vedel Jensen and Markus Kiderlen from Aarhus University for
  enlightening discussions and their kind hospitality during a visit of their department
  in 2014."
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Florian
  full_name: Pausinger, Florian
  id: 2A77D7A2-F248-11E8-B48F-1D18A9856A87
  last_name: Pausinger
  orcid: 0000-0002-8379-3768
citation:
  ama: Edelsbrunner H, Pausinger F. Approximation and convergence of the intrinsic
    volume. <i>Advances in Mathematics</i>. 2016;287:674-703. doi:<a href="https://doi.org/10.1016/j.aim.2015.10.004">10.1016/j.aim.2015.10.004</a>
  apa: Edelsbrunner, H., &#38; Pausinger, F. (2016). Approximation and convergence
    of the intrinsic volume. <i>Advances in Mathematics</i>. Academic Press. <a href="https://doi.org/10.1016/j.aim.2015.10.004">https://doi.org/10.1016/j.aim.2015.10.004</a>
  chicago: Edelsbrunner, Herbert, and Florian Pausinger. “Approximation and Convergence
    of the Intrinsic Volume.” <i>Advances in Mathematics</i>. Academic Press, 2016.
    <a href="https://doi.org/10.1016/j.aim.2015.10.004">https://doi.org/10.1016/j.aim.2015.10.004</a>.
  ieee: H. Edelsbrunner and F. Pausinger, “Approximation and convergence of the intrinsic
    volume,” <i>Advances in Mathematics</i>, vol. 287. Academic Press, pp. 674–703,
    2016.
  ista: Edelsbrunner H, Pausinger F. 2016. Approximation and convergence of the intrinsic
    volume. Advances in Mathematics. 287, 674–703.
  mla: Edelsbrunner, Herbert, and Florian Pausinger. “Approximation and Convergence
    of the Intrinsic Volume.” <i>Advances in Mathematics</i>, vol. 287, Academic Press,
    2016, pp. 674–703, doi:<a href="https://doi.org/10.1016/j.aim.2015.10.004">10.1016/j.aim.2015.10.004</a>.
  short: H. Edelsbrunner, F. Pausinger, Advances in Mathematics 287 (2016) 674–703.
date_created: 2018-12-11T11:53:20Z
date_published: 2016-01-10T00:00:00Z
date_updated: 2023-09-07T11:41:25Z
day: '10'
ddc:
- '004'
department:
- _id: HeEd
doi: 10.1016/j.aim.2015.10.004
ec_funded: 1
file:
- access_level: open_access
  checksum: f8869ec110c35c852ef6a37425374af7
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:12:10Z
  date_updated: 2020-07-14T12:45:10Z
  file_id: '4928'
  file_name: IST-2017-774-v1+1_2016-J-03-FirstIntVolume.pdf
  file_size: 248985
  relation: main_file
file_date_updated: 2020-07-14T12:45:10Z
has_accepted_license: '1'
intvolume: '       287'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 674 - 703
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: Advances in Mathematics
publication_status: published
publisher: Academic Press
publist_id: '5488'
pubrep_id: '774'
quality_controlled: '1'
related_material:
  record:
  - id: '1399'
    relation: dissertation_contains
    status: public
scopus_import: 1
status: public
title: Approximation and convergence of the intrinsic volume
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 287
year: '2016'
...
---
_id: '1705'
abstract:
- lang: eng
  text: Hybrid systems represent an important and powerful formalism for modeling
    real-world applications such as embedded systems. A verification tool like SpaceEx
    is based on the exploration of a symbolic search space (the region space). As
    a verification tool, it is typically optimized towards proving the absence of
    errors. In some settings, e.g., when the verification tool is employed in a feedback-directed
    design cycle, one would like to have the option to call a version that is optimized
    towards finding an error trajectory in the region space. A recent approach in
    this direction is based on guided search. Guided search relies on a cost function
    that indicates which states are promising to be explored, and preferably explores
    more promising states first. In this paper, we propose an abstraction-based cost
    function based on coarse-grained space abstractions for guiding the reachability
    analysis. For this purpose, a suitable abstraction technique that exploits the
    flexible granularity of modern reachability analysis algorithms is introduced.
    The new cost function is an effective extension of pattern database approaches
    that have been successfully applied in other areas. The approach has been implemented
    in the SpaceEx model checker. The evaluation shows its practical potential.
article_processing_charge: Yes (via OA deal)
author:
- first_name: Sergiy
  full_name: Bogomolov, Sergiy
  id: 369D9A44-F248-11E8-B48F-1D18A9856A87
  last_name: Bogomolov
  orcid: 0000-0002-0686-0365
- first_name: Alexandre
  full_name: Donzé, Alexandre
  last_name: Donzé
- first_name: Goran
  full_name: Frehse, Goran
  last_name: Frehse
- first_name: Radu
  full_name: Grosu, Radu
  last_name: Grosu
- first_name: Taylor
  full_name: Johnson, Taylor
  last_name: Johnson
- first_name: Hamed
  full_name: Ladan, Hamed
  last_name: Ladan
- first_name: Andreas
  full_name: Podelski, Andreas
  last_name: Podelski
- first_name: Martin
  full_name: Wehrle, Martin
  last_name: Wehrle
citation:
  ama: Bogomolov S, Donzé A, Frehse G, et al. Guided search for hybrid systems based
    on coarse-grained space abstractions. <i>International Journal on Software Tools
    for Technology Transfer</i>. 2016;18(4):449-467. doi:<a href="https://doi.org/10.1007/s10009-015-0393-y">10.1007/s10009-015-0393-y</a>
  apa: Bogomolov, S., Donzé, A., Frehse, G., Grosu, R., Johnson, T., Ladan, H., …
    Wehrle, M. (2016). Guided search for hybrid systems based on coarse-grained space
    abstractions. <i>International Journal on Software Tools for Technology Transfer</i>.
    Springer. <a href="https://doi.org/10.1007/s10009-015-0393-y">https://doi.org/10.1007/s10009-015-0393-y</a>
  chicago: Bogomolov, Sergiy, Alexandre Donzé, Goran Frehse, Radu Grosu, Taylor Johnson,
    Hamed Ladan, Andreas Podelski, and Martin Wehrle. “Guided Search for Hybrid Systems
    Based on Coarse-Grained Space Abstractions.” <i>International Journal on Software
    Tools for Technology Transfer</i>. Springer, 2016. <a href="https://doi.org/10.1007/s10009-015-0393-y">https://doi.org/10.1007/s10009-015-0393-y</a>.
  ieee: S. Bogomolov <i>et al.</i>, “Guided search for hybrid systems based on coarse-grained
    space abstractions,” <i>International Journal on Software Tools for Technology
    Transfer</i>, vol. 18, no. 4. Springer, pp. 449–467, 2016.
  ista: Bogomolov S, Donzé A, Frehse G, Grosu R, Johnson T, Ladan H, Podelski A, Wehrle
    M. 2016. Guided search for hybrid systems based on coarse-grained space abstractions.
    International Journal on Software Tools for Technology Transfer. 18(4), 449–467.
  mla: Bogomolov, Sergiy, et al. “Guided Search for Hybrid Systems Based on Coarse-Grained
    Space Abstractions.” <i>International Journal on Software Tools for Technology
    Transfer</i>, vol. 18, no. 4, Springer, 2016, pp. 449–67, doi:<a href="https://doi.org/10.1007/s10009-015-0393-y">10.1007/s10009-015-0393-y</a>.
  short: S. Bogomolov, A. Donzé, G. Frehse, R. Grosu, T. Johnson, H. Ladan, A. Podelski,
    M. Wehrle, International Journal on Software Tools for Technology Transfer 18
    (2016) 449–467.
date_created: 2018-12-11T11:53:34Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2021-01-12T06:52:38Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/s10009-015-0393-y
ec_funded: 1
file:
- access_level: open_access
  checksum: 31561d7705599a9bd4ea816accc0752e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:26Z
  date_updated: 2020-07-14T12:45:13Z
  file_id: '5146'
  file_name: IST-2016-457-v1+1_s10009-015-0393-y.pdf
  file_size: 2296522
  relation: main_file
file_date_updated: 2020-07-14T12:45:13Z
has_accepted_license: '1'
intvolume: '        18'
issue: '4'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 449 - 467
project:
- _id: 25EE3708-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '267989'
  name: Quantitative Reactive Modeling
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: The Wittgenstein Prize
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
publication: International Journal on Software Tools for Technology Transfer
publication_status: published
publisher: Springer
publist_id: '5431'
pubrep_id: '457'
quality_controlled: '1'
scopus_import: 1
status: public
title: Guided search for hybrid systems based on coarse-grained space abstractions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2016'
...
---
_id: '1707'
abstract:
- lang: eng
  text: "Volunteer supporters play an important role in modern crisis and disaster
    management. In the times of mobile Internet devices, help from thousands of volunteers
    can be requested within a short time span, thus relieving professional helpers
    from minor chores or geographically spread-out tasks. However, the simultaneous
    availability of many volunteers also poses new problems. In particular, the volunteer
    efforts must be well coordinated, or otherwise situations might emerge in which
    too many idle volunteers at one location become more of a burden than a relief
    to the professionals.\r\nIn this work, we study the task of optimally assigning
    volunteers to selected locations, e.g. in order to perform regular measurements,
    to report on damage, or to distribute information or resources to the population
    in a crisis situation. We formulate the assignment tasks as an optimization problem
    and propose an effective and efficient solution procedure. Experiments on real
    data of the Team Österreich, consisting of over 36,000 Austrian volunteers, show
    the effectiveness and efficiency of our approach."
acknowledgement: The DRIVER FP7 project has received funding from the European Unions
  Seventh Framework Programme for research, technological development and demonstration
  under grant agreement no 607798. RE-ACTA was funded within the framework of the
  Austrian Security Research Programme KIRAS by the Federal Ministry for Transport,
  Innovation and Technology.
article_number: '7402041'
author:
- first_name: Jasmin
  full_name: Pielorz, Jasmin
  id: 49BC895A-F248-11E8-B48F-1D18A9856A87
  last_name: Pielorz
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Pielorz J, Lampert C. Optimal geospatial allocation of volunteers for crisis
    management. In: IEEE; 2016. doi:<a href="https://doi.org/10.1109/ICT-DM.2015.7402041">10.1109/ICT-DM.2015.7402041</a>'
  apa: 'Pielorz, J., &#38; Lampert, C. (2016). Optimal geospatial allocation of volunteers
    for crisis management. Presented at the ICT-DM: Information and Communication
    Technologies for Disaster Management, Rennes, France: IEEE. <a href="https://doi.org/10.1109/ICT-DM.2015.7402041">https://doi.org/10.1109/ICT-DM.2015.7402041</a>'
  chicago: Pielorz, Jasmin, and Christoph Lampert. “Optimal Geospatial Allocation
    of Volunteers for Crisis Management.” IEEE, 2016. <a href="https://doi.org/10.1109/ICT-DM.2015.7402041">https://doi.org/10.1109/ICT-DM.2015.7402041</a>.
  ieee: 'J. Pielorz and C. Lampert, “Optimal geospatial allocation of volunteers for
    crisis management,” presented at the ICT-DM: Information and Communication Technologies
    for Disaster Management, Rennes, France, 2016.'
  ista: 'Pielorz J, Lampert C. 2016. Optimal geospatial allocation of volunteers for
    crisis management. ICT-DM: Information and Communication Technologies for Disaster
    Management, 7402041.'
  mla: Pielorz, Jasmin, and Christoph Lampert. <i>Optimal Geospatial Allocation of
    Volunteers for Crisis Management</i>. 7402041, IEEE, 2016, doi:<a href="https://doi.org/10.1109/ICT-DM.2015.7402041">10.1109/ICT-DM.2015.7402041</a>.
  short: J. Pielorz, C. Lampert, in:, IEEE, 2016.
conference:
  end_date: 2015-12-02
  location: Rennes, France
  name: 'ICT-DM: Information and Communication Technologies for Disaster Management'
  start_date: 2015-11-30
date_created: 2018-12-11T11:53:35Z
date_published: 2016-02-11T00:00:00Z
date_updated: 2021-01-12T06:52:39Z
day: '11'
department:
- _id: ChLa
doi: 10.1109/ICT-DM.2015.7402041
language:
- iso: eng
month: '02'
oa_version: None
publication_status: published
publisher: IEEE
publist_id: '5429'
quality_controlled: '1'
scopus_import: 1
status: public
title: Optimal geospatial allocation of volunteers for crisis management
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2016'
...
---
_id: '173'
abstract:
- lang: eng
  text: We calculate admissible values of r such that a square-free polynomial with
    integer coefficients, no fixed prime divisor and irreducible factors of degree
    at most 3 takes infinitely many values that are a product of at most r distinct
    primes.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Timothy D
  full_name: Browning, Timothy D
  id: 35827D50-F248-11E8-B48F-1D18A9856A87
  last_name: Browning
  orcid: 0000-0002-8314-0177
- first_name: Andrew
  full_name: Booker, Andrew
  last_name: Booker
citation:
  ama: Browning TD, Booker A. Square-free values of reducible polynomials. <i>Discrete
    Analysis</i>. 2016;8:1-18. doi:<a href="https://doi.org/10.19086/da.732">10.19086/da.732</a>
  apa: Browning, T. D., &#38; Booker, A. (2016). Square-free values of reducible polynomials.
    <i>Discrete Analysis</i>. <a href="https://doi.org/10.19086/da.732">https://doi.org/10.19086/da.732</a>
  chicago: Browning, Timothy D, and Andrew Booker. “Square-Free Values of Reducible
    Polynomials.” <i>Discrete Analysis</i>, 2016. <a href="https://doi.org/10.19086/da.732">https://doi.org/10.19086/da.732</a>.
  ieee: T. D. Browning and A. Booker, “Square-free values of reducible polynomials,”
    <i>Discrete Analysis</i>, vol. 8. pp. 1–18, 2016.
  ista: Browning TD, Booker A. 2016. Square-free values of reducible polynomials.
    Discrete Analysis. 8, 1–18.
  mla: Browning, Timothy D., and Andrew Booker. “Square-Free Values of Reducible Polynomials.”
    <i>Discrete Analysis</i>, vol. 8, 2016, pp. 1–18, doi:<a href="https://doi.org/10.19086/da.732">10.19086/da.732</a>.
  short: T.D. Browning, A. Booker, Discrete Analysis 8 (2016) 1–18.
date_created: 2018-12-11T11:45:00Z
date_published: 2016-06-01T00:00:00Z
date_updated: 2021-01-12T06:52:49Z
day: '01'
doi: 10.19086/da.732
extern: '1'
external_id:
  arxiv:
  - '1511.00601'
intvolume: '         8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1511.00601
month: '06'
oa: 1
oa_version: Preprint
page: 1 - 18
publication: Discrete Analysis
publication_status: published
publist_id: '7748'
quality_controlled: '1'
status: public
title: Square-free values of reducible polynomials
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2016'
...
---
_id: '1794'
abstract:
- lang: eng
  text: We consider Conditional random fields (CRFs) with pattern-based potentials
    defined on a chain. In this model the energy of a string (labeling) (Formula presented.)
    is the sum of terms over intervals [i, j] where each term is non-zero only if
    the substring (Formula presented.) equals a prespecified pattern w. Such CRFs
    can be naturally applied to many sequence tagging problems. We present efficient
    algorithms for the three standard inference tasks in a CRF, namely computing (i)
    the partition function, (ii) marginals, and (iii) computing the MAP. Their complexities
    are respectively (Formula presented.), (Formula presented.) and (Formula presented.)
    where L is the combined length of input patterns, (Formula presented.) is the
    maximum length of a pattern, and D is the input alphabet. This improves on the
    previous algorithms of Ye et al. (NIPS, 2009) whose complexities are respectively
    (Formula presented.), (Formula presented.) and (Formula presented.), where (Formula
    presented.) is the number of input patterns. In addition, we give an efficient
    algorithm for sampling, and revisit the case of MAP with non-positive weights.
acknowledgement: This work has been partially supported by the European Research Council
  under the European Unions Seventh Framework Programme (FP7/2007-2013)/ERC grant
  agreement no. 616160.
arxiv: 1
author:
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Rustem
  full_name: Takhanov, Rustem
  id: 2CCAC26C-F248-11E8-B48F-1D18A9856A87
  last_name: Takhanov
citation:
  ama: Kolmogorov V, Takhanov R. Inference algorithms for pattern-based CRFs on sequence
    data. <i>Algorithmica</i>. 2016;76(1):17-46. doi:<a href="https://doi.org/10.1007/s00453-015-0017-7">10.1007/s00453-015-0017-7</a>
  apa: Kolmogorov, V., &#38; Takhanov, R. (2016). Inference algorithms for pattern-based
    CRFs on sequence data. <i>Algorithmica</i>. Springer. <a href="https://doi.org/10.1007/s00453-015-0017-7">https://doi.org/10.1007/s00453-015-0017-7</a>
  chicago: Kolmogorov, Vladimir, and Rustem Takhanov. “Inference Algorithms for Pattern-Based
    CRFs on Sequence Data.” <i>Algorithmica</i>. Springer, 2016. <a href="https://doi.org/10.1007/s00453-015-0017-7">https://doi.org/10.1007/s00453-015-0017-7</a>.
  ieee: V. Kolmogorov and R. Takhanov, “Inference algorithms for pattern-based CRFs
    on sequence data,” <i>Algorithmica</i>, vol. 76, no. 1. Springer, pp. 17–46, 2016.
  ista: Kolmogorov V, Takhanov R. 2016. Inference algorithms for pattern-based CRFs
    on sequence data. Algorithmica. 76(1), 17–46.
  mla: Kolmogorov, Vladimir, and Rustem Takhanov. “Inference Algorithms for Pattern-Based
    CRFs on Sequence Data.” <i>Algorithmica</i>, vol. 76, no. 1, Springer, 2016, pp.
    17–46, doi:<a href="https://doi.org/10.1007/s00453-015-0017-7">10.1007/s00453-015-0017-7</a>.
  short: V. Kolmogorov, R. Takhanov, Algorithmica 76 (2016) 17–46.
date_created: 2018-12-11T11:54:02Z
date_published: 2016-09-01T00:00:00Z
date_updated: 2023-10-17T09:51:31Z
day: '01'
department:
- _id: VlKo
doi: 10.1007/s00453-015-0017-7
ec_funded: 1
external_id:
  arxiv:
  - '1210.0508'
intvolume: '        76'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1210.0508
month: '09'
oa: 1
oa_version: Preprint
page: 17 - 46
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '616160'
  name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: Algorithmica
publication_status: published
publisher: Springer
publist_id: '5316'
quality_controlled: '1'
related_material:
  record:
  - id: '2272'
    relation: earlier_version
    status: public
scopus_import: 1
status: public
title: Inference algorithms for pattern-based CRFs on sequence data
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2016'
...
---
_id: '1833'
abstract:
- lang: eng
  text: 'Relational models for contingency tables are generalizations of log-linear
    models, allowing effects associated with arbitrary subsets of cells in the table,
    and not necessarily containing the overall effect, that is, a common parameter
    in every cell. Similarly to log-linear models, relational models can be extended
    to non-negative distributions, but the extension requires more complex methods.
    An extended relational model is defined as an algebraic variety, and it turns
    out to be the closure of the original model with respect to the Bregman divergence.
    In the extended relational model, the MLE of the cell parameters always exists
    and is unique, but some of its properties may be different from those of the MLE
    under log-linear models. The MLE can be computed using a generalized iterative
    scaling procedure based on Bregman projections. '
author:
- first_name: Anna
  full_name: Klimova, Anna
  id: 31934120-F248-11E8-B48F-1D18A9856A87
  last_name: Klimova
- first_name: Tamás
  full_name: Rudas, Tamás
  last_name: Rudas
citation:
  ama: Klimova A, Rudas T. On the closure of relational models. <i>Journal of Multivariate
    Analysis</i>. 2016;143:440-452. doi:<a href="https://doi.org/10.1016/j.jmva.2015.10.005">10.1016/j.jmva.2015.10.005</a>
  apa: Klimova, A., &#38; Rudas, T. (2016). On the closure of relational models. <i>Journal
    of Multivariate Analysis</i>. Elsevier. <a href="https://doi.org/10.1016/j.jmva.2015.10.005">https://doi.org/10.1016/j.jmva.2015.10.005</a>
  chicago: Klimova, Anna, and Tamás Rudas. “On the Closure of Relational Models.”
    <i>Journal of Multivariate Analysis</i>. Elsevier, 2016. <a href="https://doi.org/10.1016/j.jmva.2015.10.005">https://doi.org/10.1016/j.jmva.2015.10.005</a>.
  ieee: A. Klimova and T. Rudas, “On the closure of relational models,” <i>Journal
    of Multivariate Analysis</i>, vol. 143. Elsevier, pp. 440–452, 2016.
  ista: Klimova A, Rudas T. 2016. On the closure of relational models. Journal of
    Multivariate Analysis. 143, 440–452.
  mla: Klimova, Anna, and Tamás Rudas. “On the Closure of Relational Models.” <i>Journal
    of Multivariate Analysis</i>, vol. 143, Elsevier, 2016, pp. 440–52, doi:<a href="https://doi.org/10.1016/j.jmva.2015.10.005">10.1016/j.jmva.2015.10.005</a>.
  short: A. Klimova, T. Rudas, Journal of Multivariate Analysis 143 (2016) 440–452.
date_created: 2018-12-11T11:54:15Z
date_published: 2016-01-01T00:00:00Z
date_updated: 2021-01-12T06:53:30Z
day: '01'
department:
- _id: CaUh
doi: 10.1016/j.jmva.2015.10.005
intvolume: '       143'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1501.00600
month: '01'
oa: 1
oa_version: Preprint
page: 440 - 452
publication: Journal of Multivariate Analysis
publication_status: published
publisher: Elsevier
publist_id: '5270'
quality_controlled: '1'
scopus_import: 1
status: public
title: On the closure of relational models
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 143
year: '2016'
...
---
_id: '1881'
abstract:
- lang: eng
  text: 'We consider random matrices of the form H=W+λV, λ∈ℝ+, where W is a real symmetric
    or complex Hermitian Wigner matrix of size N and V is a real bounded diagonal
    random matrix of size N with i.i.d.\ entries that are independent of W. We assume
    subexponential decay for the matrix entries of W and we choose λ∼1, so that the
    eigenvalues of W and λV are typically of the same order. Further, we assume that
    the density of the entries of V is supported on a single interval and is convex
    near the edges of its support. In this paper we prove that there is λ+∈ℝ+ such
    that the largest eigenvalues of H are in the limit of large N determined by the
    order statistics of V for λ&gt;λ+. In particular, the largest eigenvalue of H
    has a Weibull distribution in the limit N→∞ if λ&gt;λ+. Moreover, for N sufficiently
    large, we show that the eigenvectors associated to the largest eigenvalues are
    partially localized for λ&gt;λ+, while they are completely delocalized for λ&lt;λ+.
    Similar results hold for the lowest eigenvalues. '
acknowledgement: "Most of the presented work was obtained while Kevin Schnelli was
  staying at the IAS with the support of\r\nThe Fund For Math."
author:
- first_name: Jioon
  full_name: Lee, Jioon
  last_name: Lee
- first_name: Kevin
  full_name: Schnelli, Kevin
  id: 434AD0AE-F248-11E8-B48F-1D18A9856A87
  last_name: Schnelli
  orcid: 0000-0003-0954-3231
citation:
  ama: Lee J, Schnelli K. Extremal eigenvalues and eigenvectors of deformed Wigner
    matrices. <i>Probability Theory and Related Fields</i>. 2016;164(1-2):165-241.
    doi:<a href="https://doi.org/10.1007/s00440-014-0610-8">10.1007/s00440-014-0610-8</a>
  apa: Lee, J., &#38; Schnelli, K. (2016). Extremal eigenvalues and eigenvectors of
    deformed Wigner matrices. <i>Probability Theory and Related Fields</i>. Springer.
    <a href="https://doi.org/10.1007/s00440-014-0610-8">https://doi.org/10.1007/s00440-014-0610-8</a>
  chicago: Lee, Jioon, and Kevin Schnelli. “Extremal Eigenvalues and Eigenvectors
    of Deformed Wigner Matrices.” <i>Probability Theory and Related Fields</i>. Springer,
    2016. <a href="https://doi.org/10.1007/s00440-014-0610-8">https://doi.org/10.1007/s00440-014-0610-8</a>.
  ieee: J. Lee and K. Schnelli, “Extremal eigenvalues and eigenvectors of deformed
    Wigner matrices,” <i>Probability Theory and Related Fields</i>, vol. 164, no.
    1–2. Springer, pp. 165–241, 2016.
  ista: Lee J, Schnelli K. 2016. Extremal eigenvalues and eigenvectors of deformed
    Wigner matrices. Probability Theory and Related Fields. 164(1–2), 165–241.
  mla: Lee, Jioon, and Kevin Schnelli. “Extremal Eigenvalues and Eigenvectors of Deformed
    Wigner Matrices.” <i>Probability Theory and Related Fields</i>, vol. 164, no.
    1–2, Springer, 2016, pp. 165–241, doi:<a href="https://doi.org/10.1007/s00440-014-0610-8">10.1007/s00440-014-0610-8</a>.
  short: J. Lee, K. Schnelli, Probability Theory and Related Fields 164 (2016) 165–241.
date_created: 2018-12-11T11:54:31Z
date_published: 2016-02-01T00:00:00Z
date_updated: 2021-01-12T06:53:49Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s00440-014-0610-8
ec_funded: 1
intvolume: '       164'
issue: 1-2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/1310.7057
month: '02'
oa: 1
oa_version: Preprint
page: 165 - 241
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Probability Theory and Related Fields
publication_status: published
publisher: Springer
publist_id: '5215'
quality_controlled: '1'
scopus_import: 1
status: public
title: Extremal eigenvalues and eigenvectors of deformed Wigner matrices
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 164
year: '2016'
...
---
_id: '13385'
abstract:
- lang: eng
  text: Novel light-responsive nanoparticles were synthesized by decorating the surfaces
    of gold and silver nanoparticles with a nitrospiropyran molecular photoswitch.
    Upon exposure to UV light in nonpolar solvents, these nanoparticles self-assembled
    to afford spherical aggregates, which disassembled rapidly when the UV stimulus
    was turned off. The sizes of these aggregates depended on the nanoparticle concentration,
    and their lifetimes could be controlled by adjusting the surface concentration
    of nitrospiropyran on the nanoparticles. The conformational flexibility of nitrospiropyran,
    which was altered by modifying the structure of the background ligand, had a profound
    impact on the self-assembly process. By coating the nanoparticles with a spiropyran
    lacking the nitro group, a conceptually different self-assembly system, relying
    on a reversible proton transfer, was realized. The resulting particles spontaneously
    (in the dark) assembled into aggregates that could be readily disassembled upon
    exposure to blue light.
article_processing_charge: No
article_type: original
author:
- first_name: Pintu K.
  full_name: Kundu, Pintu K.
  last_name: Kundu
- first_name: Sanjib
  full_name: Das, Sanjib
  last_name: Das
- first_name: Johannes
  full_name: Ahrens, Johannes
  last_name: Ahrens
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
citation:
  ama: Kundu PK, Das S, Ahrens J, Klajn R. Controlling the lifetimes of dynamic nanoparticle
    aggregates by spiropyran functionalization. <i>Nanoscale</i>. 2016;8(46):19280-19286.
    doi:<a href="https://doi.org/10.1039/c6nr05959g">10.1039/c6nr05959g</a>
  apa: Kundu, P. K., Das, S., Ahrens, J., &#38; Klajn, R. (2016). Controlling the
    lifetimes of dynamic nanoparticle aggregates by spiropyran functionalization.
    <i>Nanoscale</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/c6nr05959g">https://doi.org/10.1039/c6nr05959g</a>
  chicago: Kundu, Pintu K., Sanjib Das, Johannes Ahrens, and Rafal Klajn. “Controlling
    the Lifetimes of Dynamic Nanoparticle Aggregates by Spiropyran Functionalization.”
    <i>Nanoscale</i>. Royal Society of Chemistry, 2016. <a href="https://doi.org/10.1039/c6nr05959g">https://doi.org/10.1039/c6nr05959g</a>.
  ieee: P. K. Kundu, S. Das, J. Ahrens, and R. Klajn, “Controlling the lifetimes of
    dynamic nanoparticle aggregates by spiropyran functionalization,” <i>Nanoscale</i>,
    vol. 8, no. 46. Royal Society of Chemistry, pp. 19280–19286, 2016.
  ista: Kundu PK, Das S, Ahrens J, Klajn R. 2016. Controlling the lifetimes of dynamic
    nanoparticle aggregates by spiropyran functionalization. Nanoscale. 8(46), 19280–19286.
  mla: Kundu, Pintu K., et al. “Controlling the Lifetimes of Dynamic Nanoparticle
    Aggregates by Spiropyran Functionalization.” <i>Nanoscale</i>, vol. 8, no. 46,
    Royal Society of Chemistry, 2016, pp. 19280–86, doi:<a href="https://doi.org/10.1039/c6nr05959g">10.1039/c6nr05959g</a>.
  short: P.K. Kundu, S. Das, J. Ahrens, R. Klajn, Nanoscale 8 (2016) 19280–19286.
date_created: 2023-08-01T09:42:22Z
date_published: 2016-10-19T00:00:00Z
date_updated: 2023-08-07T12:24:46Z
day: '19'
doi: 10.1039/c6nr05959g
extern: '1'
external_id:
  pmid:
  - '27830865'
intvolume: '         8'
issue: '46'
keyword:
- General Materials Science
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1039/C6NR05959G
month: '10'
oa: 1
oa_version: Published Version
page: 19280-19286
pmid: 1
publication: Nanoscale
publication_identifier:
  eissn:
  - 2040-3372
  issn:
  - 2040-3364
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Controlling the lifetimes of dynamic nanoparticle aggregates by spiropyran
  functionalization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2016'
...
---
_id: '13386'
abstract:
- lang: eng
  text: Azobenzenealkanethiols in self-assembled monolayers (SAMs) on Au(111) exhibit
    reversible trans–cis photoisomerization when diluted with alkanethiol spacers.
    Using these mixed SAMs, we show switching of the linear optical and second-harmonic
    response. The effective switching of these surface optical properties relies on
    a reasonably large cross section and a high photoisomerization yield as well as
    a long lifetime of the metastable cis isomer. We quantified the switching process
    by X-ray absorption spectroscopy. The cross sections for the trans–cis and cis–trans
    photoisomerization with 365 and 455 nm light, respectively, are 1 order of magnitude
    smaller than in solution. In vacuum, the 365 nm photostationary state comprises
    50–74% of the molecules in the cis form, limited by their rapid thermal isomerization
    back to the trans state. In contrast, the 455 nm photostationary state contains
    nearly 100% trans-azobenzene. We determined time constants for the thermal cis–trans
    isomerization of only a few minutes in vacuum and in a dry nitrogen atmosphere
    but of more than 1 day in ambient air. Our results suggest that adventitious water
    adsorbed on the surface of the SAM stabilizes the polar cis configuration of azobenzene
    under ambient conditions. The back reaction rate constants differing by 2 orders
    of magnitude underline the huge influence of the environment and, accordingly,
    its importance when comparing various experiments.
article_processing_charge: No
article_type: original
author:
- first_name: Thomas
  full_name: Moldt, Thomas
  last_name: Moldt
- first_name: Daniel
  full_name: Przyrembel, Daniel
  last_name: Przyrembel
- first_name: Michael
  full_name: Schulze, Michael
  last_name: Schulze
- first_name: Wibke
  full_name: Bronsch, Wibke
  last_name: Bronsch
- first_name: Larissa
  full_name: Boie, Larissa
  last_name: Boie
- first_name: Daniel
  full_name: Brete, Daniel
  last_name: Brete
- first_name: Cornelius
  full_name: Gahl, Cornelius
  last_name: Gahl
- first_name: Rafal
  full_name: Klajn, Rafal
  id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
  last_name: Klajn
- first_name: Petra
  full_name: Tegeder, Petra
  last_name: Tegeder
- first_name: Martin
  full_name: Weinelt, Martin
  last_name: Weinelt
citation:
  ama: Moldt T, Przyrembel D, Schulze M, et al. Differing isomerization kinetics of
    azobenzene-functionalized self-assembled monolayers in ambient air and in vacuum.
    <i>Langmuir</i>. 2016;32(42):10795-10801. doi:<a href="https://doi.org/10.1021/acs.langmuir.6b01690">10.1021/acs.langmuir.6b01690</a>
  apa: Moldt, T., Przyrembel, D., Schulze, M., Bronsch, W., Boie, L., Brete, D., …
    Weinelt, M. (2016). Differing isomerization kinetics of azobenzene-functionalized
    self-assembled monolayers in ambient air and in vacuum. <i>Langmuir</i>. American
    Chemical Society. <a href="https://doi.org/10.1021/acs.langmuir.6b01690">https://doi.org/10.1021/acs.langmuir.6b01690</a>
  chicago: Moldt, Thomas, Daniel Przyrembel, Michael Schulze, Wibke Bronsch, Larissa
    Boie, Daniel Brete, Cornelius Gahl, Rafal Klajn, Petra Tegeder, and Martin Weinelt.
    “Differing Isomerization Kinetics of Azobenzene-Functionalized Self-Assembled
    Monolayers in Ambient Air and in Vacuum.” <i>Langmuir</i>. American Chemical Society,
    2016. <a href="https://doi.org/10.1021/acs.langmuir.6b01690">https://doi.org/10.1021/acs.langmuir.6b01690</a>.
  ieee: T. Moldt <i>et al.</i>, “Differing isomerization kinetics of azobenzene-functionalized
    self-assembled monolayers in ambient air and in vacuum,” <i>Langmuir</i>, vol.
    32, no. 42. American Chemical Society, pp. 10795–10801, 2016.
  ista: Moldt T, Przyrembel D, Schulze M, Bronsch W, Boie L, Brete D, Gahl C, Klajn
    R, Tegeder P, Weinelt M. 2016. Differing isomerization kinetics of azobenzene-functionalized
    self-assembled monolayers in ambient air and in vacuum. Langmuir. 32(42), 10795–10801.
  mla: Moldt, Thomas, et al. “Differing Isomerization Kinetics of Azobenzene-Functionalized
    Self-Assembled Monolayers in Ambient Air and in Vacuum.” <i>Langmuir</i>, vol.
    32, no. 42, American Chemical Society, 2016, pp. 10795–801, doi:<a href="https://doi.org/10.1021/acs.langmuir.6b01690">10.1021/acs.langmuir.6b01690</a>.
  short: T. Moldt, D. Przyrembel, M. Schulze, W. Bronsch, L. Boie, D. Brete, C. Gahl,
    R. Klajn, P. Tegeder, M. Weinelt, Langmuir 32 (2016) 10795–10801.
date_created: 2023-08-01T09:42:37Z
date_published: 2016-10-25T00:00:00Z
date_updated: 2023-08-07T12:27:06Z
day: '25'
doi: 10.1021/acs.langmuir.6b01690
extern: '1'
external_id:
  pmid:
  - '27681851'
intvolume: '        32'
issue: '42'
keyword:
- Electrochemistry
- Spectroscopy
- Surfaces and Interfaces
- Condensed Matter Physics
- General Materials Science
language:
- iso: eng
month: '10'
oa_version: None
page: 10795-10801
pmid: 1
publication: Langmuir
publication_identifier:
  eissn:
  - 1520-5827
  issn:
  - 0743-7463
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differing isomerization kinetics of azobenzene-functionalized self-assembled
  monolayers in ambient air and in vacuum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2016'
...
