---
_id: '7141'
article_processing_charge: No
article_type: original
author:
- first_name: Chiara
full_name: Rolando, Chiara
last_name: Rolando
- first_name: Andrea
full_name: Erni, Andrea
last_name: Erni
- first_name: Alice
full_name: Grison, Alice
last_name: Grison
- first_name: Robert J
full_name: Beattie, Robert J
id: 2E26DF60-F248-11E8-B48F-1D18A9856A87
last_name: Beattie
orcid: 0000-0002-8483-8753
- first_name: Anna
full_name: Engler, Anna
last_name: Engler
- first_name: Paul J.
full_name: Gokhale, Paul J.
last_name: Gokhale
- first_name: Marta
full_name: Milo, Marta
last_name: Milo
- first_name: Thomas
full_name: Wegleiter, Thomas
last_name: Wegleiter
- first_name: Sebastian
full_name: Jessberger, Sebastian
last_name: Jessberger
- first_name: Verdon
full_name: Taylor, Verdon
last_name: Taylor
citation:
ama: Rolando C, Erni A, Grison A, et al. Multipotency of adult hippocampal NSCs
in vivo is restricted by Drosha/NFIB. Cell Stem Cell. 2016;19(5):653-662.
doi:10.1016/j.stem.2016.07.003
apa: Rolando, C., Erni, A., Grison, A., Beattie, R. J., Engler, A., Gokhale, P.
J., … Taylor, V. (2016). Multipotency of adult hippocampal NSCs in vivo is restricted
by Drosha/NFIB. Cell Stem Cell. Elsevier. https://doi.org/10.1016/j.stem.2016.07.003
chicago: Rolando, Chiara, Andrea Erni, Alice Grison, Robert J Beattie, Anna Engler,
Paul J. Gokhale, Marta Milo, Thomas Wegleiter, Sebastian Jessberger, and Verdon
Taylor. “Multipotency of Adult Hippocampal NSCs in Vivo Is Restricted by Drosha/NFIB.”
Cell Stem Cell. Elsevier, 2016. https://doi.org/10.1016/j.stem.2016.07.003.
ieee: C. Rolando et al., “Multipotency of adult hippocampal NSCs in vivo
is restricted by Drosha/NFIB,” Cell Stem Cell, vol. 19, no. 5. Elsevier,
pp. 653–662, 2016.
ista: Rolando C, Erni A, Grison A, Beattie RJ, Engler A, Gokhale PJ, Milo M, Wegleiter
T, Jessberger S, Taylor V. 2016. Multipotency of adult hippocampal NSCs in vivo
is restricted by Drosha/NFIB. Cell Stem Cell. 19(5), 653–662.
mla: Rolando, Chiara, et al. “Multipotency of Adult Hippocampal NSCs in Vivo Is
Restricted by Drosha/NFIB.” Cell Stem Cell, vol. 19, no. 5, Elsevier, 2016,
pp. 653–62, doi:10.1016/j.stem.2016.07.003.
short: C. Rolando, A. Erni, A. Grison, R.J. Beattie, A. Engler, P.J. Gokhale, M.
Milo, T. Wegleiter, S. Jessberger, V. Taylor, Cell Stem Cell 19 (2016) 653–662.
date_created: 2019-11-28T13:09:09Z
date_published: 2016-08-16T00:00:00Z
date_updated: 2021-01-12T08:12:00Z
day: '16'
doi: 10.1016/j.stem.2016.07.003
extern: '1'
intvolume: ' 19'
issue: '5'
language:
- iso: eng
month: '08'
oa_version: None
page: 653-662
publication: Cell Stem Cell
publication_identifier:
issn:
- 1934-5909
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Multipotency of adult hippocampal NSCs in vivo is restricted by Drosha/NFIB
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2016'
...
---
_id: '7279'
abstract:
- lang: eng
text: Kinetics of electrochemical reactions are several orders of magnitude slower
in solids than in liquids as a result of the much lower ion diffusivity. Yet,
the solid state maximizes the density of redox species, which is at least two
orders of magnitude lower in liquids because of solubility limitations. With regard
to electrochemical energy storage devices, this leads to high-energy batteries
with limited power and high-power supercapacitors with a well-known energy deficiency.
For such devices the ideal system should endow the liquid state with a density
of redox species close to the solid state. Here we report an approach based on
biredox ionic liquids to achieve bulk-like redox density at liquid-like fast kinetics.
The cation and anion of these biredox ionic liquids bear moieties that undergo
very fast reversible redox reactions. As a first demonstration of their potential
for high-capacity/high-rate charge storage, we used them in redox supercapacitors.
These ionic liquids are able to decouple charge storage from an ion-accessible
electrode surface, by storing significant charge in the pores of the electrodes,
to minimize self-discharge and leakage current as a result of retaining the redox
species in the pores, and to raise working voltage due to their wide electrochemical
window.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Eléonore
full_name: Mourad, Eléonore
last_name: Mourad
- first_name: Laura
full_name: Coustan, Laura
last_name: Coustan
- first_name: Pierre
full_name: Lannelongue, Pierre
last_name: Lannelongue
- first_name: Dodzi
full_name: Zigah, Dodzi
last_name: Zigah
- first_name: Ahmad
full_name: Mehdi, Ahmad
last_name: Mehdi
- first_name: André
full_name: Vioux, André
last_name: Vioux
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Frédéric
full_name: Favier, Frédéric
last_name: Favier
- first_name: Olivier
full_name: Fontaine, Olivier
last_name: Fontaine
citation:
ama: Mourad E, Coustan L, Lannelongue P, et al. Biredox ionic liquids with solid-like
redox density in the liquid state for high-energy supercapacitors. Nature Materials.
2016;16(4):446-453. doi:10.1038/nmat4808
apa: Mourad, E., Coustan, L., Lannelongue, P., Zigah, D., Mehdi, A., Vioux, A.,
… Fontaine, O. (2016). Biredox ionic liquids with solid-like redox density in
the liquid state for high-energy supercapacitors. Nature Materials. Springer
Nature. https://doi.org/10.1038/nmat4808
chicago: Mourad, Eléonore, Laura Coustan, Pierre Lannelongue, Dodzi Zigah, Ahmad
Mehdi, André Vioux, Stefan Alexander Freunberger, Frédéric Favier, and Olivier
Fontaine. “Biredox Ionic Liquids with Solid-like Redox Density in the Liquid State
for High-Energy Supercapacitors.” Nature Materials. Springer Nature, 2016.
https://doi.org/10.1038/nmat4808.
ieee: E. Mourad et al., “Biredox ionic liquids with solid-like redox density
in the liquid state for high-energy supercapacitors,” Nature Materials,
vol. 16, no. 4. Springer Nature, pp. 446–453, 2016.
ista: Mourad E, Coustan L, Lannelongue P, Zigah D, Mehdi A, Vioux A, Freunberger
SA, Favier F, Fontaine O. 2016. Biredox ionic liquids with solid-like redox density
in the liquid state for high-energy supercapacitors. Nature Materials. 16(4),
446–453.
mla: Mourad, Eléonore, et al. “Biredox Ionic Liquids with Solid-like Redox Density
in the Liquid State for High-Energy Supercapacitors.” Nature Materials,
vol. 16, no. 4, Springer Nature, 2016, pp. 446–53, doi:10.1038/nmat4808.
short: E. Mourad, L. Coustan, P. Lannelongue, D. Zigah, A. Mehdi, A. Vioux, S.A.
Freunberger, F. Favier, O. Fontaine, Nature Materials 16 (2016) 446–453.
date_created: 2020-01-15T07:27:54Z
date_published: 2016-11-28T00:00:00Z
date_updated: 2021-01-12T08:12:43Z
day: '28'
doi: 10.1038/nmat4808
extern: '1'
external_id:
arxiv:
- '1711.11518'
intvolume: ' 16'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1711.11518
month: '11'
oa: 1
oa_version: Preprint
page: 446-453
publication: Nature Materials
publication_identifier:
issn:
- 1476-1122
- 1476-4660
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Biredox ionic liquids with solid-like redox density in the liquid state for
high-energy supercapacitors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2016'
...
---
_id: '7293'
abstract:
- lang: eng
text: If proton exchange membrane fuel cells (PEMFC) are ever to succeed in sustainable
energy landscape as a potential zero emission technology, it is inevitable to
reduce electricity production cost associated mainly with its MEAs, cell hardware
and gas storage units. We demonstrate a diverse strategy for achieving this target
with a concomitant amplification of its specific energy and power, by rolling
a thin graphene oxide (GO) based MEA alone into a tubular and air breathing architecture
with internal fuel storage. The unique properties of GO being a barrier for molecular
fuels and proton conducting to construct a GO based cylindrical MEA. This makes
the tubular PEMFC ∼75 times lighter, featuring ∼37 and ∼92 times respectively,
the power and energy per overall weight, making it a potential candidate for portable
applications. The intrinsic electrochemical kinetics at the three-phase boundary
are somewhat affected by the bending of the MEA, albeit at overall reduction in
power production cost.
article_processing_charge: No
article_type: original
author:
- first_name: Ravikumar
full_name: Thimmappa, Ravikumar
last_name: Thimmappa
- first_name: Mruthyunjayachari
full_name: Chattanahalli Devendrachari, Mruthyunjayachari
last_name: Chattanahalli Devendrachari
- first_name: Shahid
full_name: Shafi, Shahid
last_name: Shafi
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Musthafa
full_name: Ottakam Thotiyl, Musthafa
last_name: Ottakam Thotiyl
citation:
ama: Thimmappa R, Chattanahalli Devendrachari M, Shafi S, Freunberger SA, Ottakam
Thotiyl M. Proton conducting hollow graphene oxide cylinder as molecular fuel
barrier for tubular H2-air fuel cell. International Journal of Hydrogen Energy.
2016;41(47):22305-22315. doi:10.1016/j.ijhydene.2016.08.057
apa: Thimmappa, R., Chattanahalli Devendrachari, M., Shafi, S., Freunberger, S.
A., & Ottakam Thotiyl, M. (2016). Proton conducting hollow graphene oxide
cylinder as molecular fuel barrier for tubular H2-air fuel cell. International
Journal of Hydrogen Energy. Elsevier. https://doi.org/10.1016/j.ijhydene.2016.08.057
chicago: Thimmappa, Ravikumar, Mruthyunjayachari Chattanahalli Devendrachari, Shahid
Shafi, Stefan Alexander Freunberger, and Musthafa Ottakam Thotiyl. “Proton Conducting
Hollow Graphene Oxide Cylinder as Molecular Fuel Barrier for Tubular H2-Air Fuel
Cell.” International Journal of Hydrogen Energy. Elsevier, 2016. https://doi.org/10.1016/j.ijhydene.2016.08.057.
ieee: R. Thimmappa, M. Chattanahalli Devendrachari, S. Shafi, S. A. Freunberger,
and M. Ottakam Thotiyl, “Proton conducting hollow graphene oxide cylinder as molecular
fuel barrier for tubular H2-air fuel cell,” International Journal of Hydrogen
Energy, vol. 41, no. 47. Elsevier, pp. 22305–22315, 2016.
ista: Thimmappa R, Chattanahalli Devendrachari M, Shafi S, Freunberger SA, Ottakam
Thotiyl M. 2016. Proton conducting hollow graphene oxide cylinder as molecular
fuel barrier for tubular H2-air fuel cell. International Journal of Hydrogen Energy.
41(47), 22305–22315.
mla: Thimmappa, Ravikumar, et al. “Proton Conducting Hollow Graphene Oxide Cylinder
as Molecular Fuel Barrier for Tubular H2-Air Fuel Cell.” International Journal
of Hydrogen Energy, vol. 41, no. 47, Elsevier, 2016, pp. 22305–15, doi:10.1016/j.ijhydene.2016.08.057.
short: R. Thimmappa, M. Chattanahalli Devendrachari, S. Shafi, S.A. Freunberger,
M. Ottakam Thotiyl, International Journal of Hydrogen Energy 41 (2016) 22305–22315.
date_created: 2020-01-15T12:15:57Z
date_published: 2016-12-21T00:00:00Z
date_updated: 2021-01-12T08:12:49Z
day: '21'
doi: 10.1016/j.ijhydene.2016.08.057
extern: '1'
intvolume: ' 41'
issue: '47'
language:
- iso: eng
month: '12'
oa_version: None
page: 22305-22315
publication: International Journal of Hydrogen Energy
publication_identifier:
issn:
- 0360-3199
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Proton conducting hollow graphene oxide cylinder as molecular fuel barrier
for tubular H2-air fuel cell
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 41
year: '2016'
...
---
_id: '7294'
abstract:
- lang: eng
text: Mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres were prepared by
non-hydrolytic sol–gel from TiCl4, VOCl3, and iPr2O at 110 °C without any solvent
or additives. The samples were characterized by elemental analysis, X-ray diffraction,
Raman spectroscopy, scanning electron microscopy, nitrogen physisorption, and
impedance measurements. At low vanadium loadings, only TiO2 anatase was detected,
and V2O5 scherbinaite was also detected at high vanadium loadings. The texture
of the samples depended on the V loading, but all the samples appeared built of
primary nanoparticles (≈10–20 nm in size) that aggregate to form mesoporous micron-sized
spheres. The lithium insertion properties of these materials were evaluated by
galvanostatic measurements taken using coin-type cells, in view of their application
as electrode for rechargeable Li-ion batteries. The mesoporous TiO2 microspheres
showed good performances, with a specific reversible capacity of 145 and 128 mAh
g−1 at C/2 and C, respectively (C = 335.6 mA g−1), good coulombic efficiency,
and a moderate capacity fade (6 %) from the 2nd to the 20th cycle at C/20. Although
the addition of V effectively increased the electronic conductivity of the powders,
the specific reversible capacity and cycling performances of the TiO2–V2O5 samples
were only minimally improved for a 5 at% V loading and were lower at higher V
loading.
article_processing_charge: No
article_type: original
author:
- first_name: A. M.
full_name: Escamilla-Pérez, A. M.
last_name: Escamilla-Pérez
- first_name: N.
full_name: Louvain, N.
last_name: Louvain
- first_name: M.
full_name: Kaschowitz, M.
last_name: Kaschowitz
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: O.
full_name: Fontaine, O.
last_name: Fontaine
- first_name: B.
full_name: Boury, B.
last_name: Boury
- first_name: N.
full_name: Brun, N.
last_name: Brun
- first_name: P. H.
full_name: Mutin, P. H.
last_name: Mutin
citation:
ama: Escamilla-Pérez AM, Louvain N, Kaschowitz M, et al. Lithium insertion properties
of mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic
sol–gel. Journal of Sol-Gel Science and Technology. 2016;79(2):270-278.
doi:10.1007/s10971-016-4037-9
apa: Escamilla-Pérez, A. M., Louvain, N., Kaschowitz, M., Freunberger, S. A., Fontaine,
O., Boury, B., … Mutin, P. H. (2016). Lithium insertion properties of mesoporous
nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel.
Journal of Sol-Gel Science and Technology. Springer Nature. https://doi.org/10.1007/s10971-016-4037-9
chicago: Escamilla-Pérez, A. M., N. Louvain, M. Kaschowitz, Stefan Alexander Freunberger,
O. Fontaine, B. Boury, N. Brun, and P. H. Mutin. “Lithium Insertion Properties
of Mesoporous Nanocrystalline TiO2 and TiO2–V2O5 Microspheres Prepared by Non-Hydrolytic
Sol–Gel.” Journal of Sol-Gel Science and Technology. Springer Nature, 2016.
https://doi.org/10.1007/s10971-016-4037-9.
ieee: A. M. Escamilla-Pérez et al., “Lithium insertion properties of mesoporous
nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel,”
Journal of Sol-Gel Science and Technology, vol. 79, no. 2. Springer Nature,
pp. 270–278, 2016.
ista: Escamilla-Pérez AM, Louvain N, Kaschowitz M, Freunberger SA, Fontaine O, Boury
B, Brun N, Mutin PH. 2016. Lithium insertion properties of mesoporous nanocrystalline
TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel. Journal of
Sol-Gel Science and Technology. 79(2), 270–278.
mla: Escamilla-Pérez, A. M., et al. “Lithium Insertion Properties of Mesoporous
Nanocrystalline TiO2 and TiO2–V2O5 Microspheres Prepared by Non-Hydrolytic Sol–Gel.”
Journal of Sol-Gel Science and Technology, vol. 79, no. 2, Springer Nature,
2016, pp. 270–78, doi:10.1007/s10971-016-4037-9.
short: A.M. Escamilla-Pérez, N. Louvain, M. Kaschowitz, S.A. Freunberger, O. Fontaine,
B. Boury, N. Brun, P.H. Mutin, Journal of Sol-Gel Science and Technology 79 (2016)
270–278.
date_created: 2020-01-15T12:16:08Z
date_published: 2016-04-08T00:00:00Z
date_updated: 2021-01-12T08:12:49Z
day: '08'
doi: 10.1007/s10971-016-4037-9
extern: '1'
intvolume: ' 79'
issue: '2'
language:
- iso: eng
month: '04'
oa_version: None
page: 270-278
publication: Journal of Sol-Gel Science and Technology
publication_identifier:
issn:
- 0928-0707
- 1573-4846
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Lithium insertion properties of mesoporous nanocrystalline TiO2 and TiO2–V2O5
microspheres prepared by non-hydrolytic sol–gel
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 79
year: '2016'
...
---
_id: '7295'
abstract:
- lang: eng
text: Redox ionic liquids consisting of ions bearing redox moieties are receiving
increasing interest in electrochemical applications, as they associate electroactive
properties with the classical properties of ionic liquids. Here, biredox ionic
liquid electrolytes are described in which both anion and cation are functionalized
with anthraquinone and 2,2,6,6-tetramethylpiperidinyl-1-oxyl (TEMPO) groups, respectively.
In-depth investigations based on crossed experimental and theoretical studies
were carried out to elucidate how the bulkiness of ions bearing a redox moiety
impacted electron and mass transfers, and accordingly the efficiency of electrochemical
devices. The values of solvated radii of different redox ions, as well as the
related kinetic constants, were extracted from cyclic voltammetry experiments.
Reformulating the basic relations of electron transfer theory (based on Marcus-Hush
theory) evidenced that in such redox species, with an unsymmetrical located redox
centre, the electron transfer was not governed by the overall size of the solvated
redox species, but rather by the radius of the redox active subunit, which takes
preferential orientation towards the surface, thus allowing higher kinetic constants
than what classical theory would predict. This vision opens ample opportunities
for biredox ILs as electrolytes in electrochemical devices.
article_processing_charge: No
article_type: original
author:
- first_name: Eléonore
full_name: Mourad, Eléonore
last_name: Mourad
- first_name: Laura
full_name: Coustan, Laura
last_name: Coustan
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Ahmad
full_name: Mehdi, Ahmad
last_name: Mehdi
- first_name: André
full_name: Vioux, André
last_name: Vioux
- first_name: Frédérique
full_name: Favier, Frédérique
last_name: Favier
- first_name: Olivier
full_name: Fontaine, Olivier
last_name: Fontaine
citation:
ama: 'Mourad E, Coustan L, Freunberger SA, et al. Biredox ionic liquids: Electrochemical
investigation and impact of ion size on electron transfer. Electrochimica Acta.
2016;206(7):513-523. doi:10.1016/j.electacta.2016.02.211'
apa: 'Mourad, E., Coustan, L., Freunberger, S. A., Mehdi, A., Vioux, A., Favier,
F., & Fontaine, O. (2016). Biredox ionic liquids: Electrochemical investigation
and impact of ion size on electron transfer. Electrochimica Acta. Elsevier.
https://doi.org/10.1016/j.electacta.2016.02.211'
chicago: 'Mourad, Eléonore, Laura Coustan, Stefan Alexander Freunberger, Ahmad Mehdi,
André Vioux, Frédérique Favier, and Olivier Fontaine. “Biredox Ionic Liquids:
Electrochemical Investigation and Impact of Ion Size on Electron Transfer.” Electrochimica
Acta. Elsevier, 2016. https://doi.org/10.1016/j.electacta.2016.02.211.'
ieee: 'E. Mourad et al., “Biredox ionic liquids: Electrochemical investigation
and impact of ion size on electron transfer,” Electrochimica Acta, vol.
206, no. 7. Elsevier, pp. 513–523, 2016.'
ista: 'Mourad E, Coustan L, Freunberger SA, Mehdi A, Vioux A, Favier F, Fontaine
O. 2016. Biredox ionic liquids: Electrochemical investigation and impact of ion
size on electron transfer. Electrochimica Acta. 206(7), 513–523.'
mla: 'Mourad, Eléonore, et al. “Biredox Ionic Liquids: Electrochemical Investigation
and Impact of Ion Size on Electron Transfer.” Electrochimica Acta, vol.
206, no. 7, Elsevier, 2016, pp. 513–23, doi:10.1016/j.electacta.2016.02.211.'
short: E. Mourad, L. Coustan, S.A. Freunberger, A. Mehdi, A. Vioux, F. Favier, O.
Fontaine, Electrochimica Acta 206 (2016) 513–523.
date_created: 2020-01-15T12:16:17Z
date_published: 2016-07-10T00:00:00Z
date_updated: 2021-01-12T08:12:50Z
day: '10'
doi: 10.1016/j.electacta.2016.02.211
extern: '1'
intvolume: ' 206'
issue: '7'
language:
- iso: eng
month: '07'
oa_version: None
page: 513-523
publication: Electrochimica Acta
publication_identifier:
issn:
- 0013-4686
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Biredox ionic liquids: Electrochemical investigation and impact of ion size
on electron transfer'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 206
year: '2016'
...
---
_id: '7296'
abstract:
- lang: eng
text: Within the scope of developing a multi-physical model describing battery behavior
during and after the mechanical load (accelerations, intrusions) of a vehicle’s
high voltage battery, an internal short circuit model is of deep interest for
a virtual hazard assessment. The internal short resistance and the size of the
affected area must be known as a minimum for determining the released heat and,
in consequence, the temperatures. The internal short resistance of purpose-built
dummy pouch cells, filled with electrolyte-like solvent without conductive salt,
has thus been measured in a given short area under various compressive loads.
The resistances for different short scenarios obtained are analyzed and described
in a mathematical form. Short circuit experiments with dummy cells using an external
power source have also been carried out. This set-up allows the measurement of
the temperature evolution at a known current and a determination of the actual
short resistance. The post-mortem analysis of the samples shows a correlation
between the maximum temperatures, released short heat and the separator melt diameter.
article_number: '8'
article_processing_charge: No
article_type: original
author:
- first_name: Theo
full_name: Volck, Theo
last_name: Volck
- first_name: Wolfgang
full_name: Sinz, Wolfgang
last_name: Sinz
- first_name: Gregor
full_name: Gstrein, Gregor
last_name: Gstrein
- first_name: Christoph
full_name: Breitfuss, Christoph
last_name: Breitfuss
- first_name: Simon
full_name: Heindl, Simon
last_name: Heindl
- first_name: Hermann
full_name: Steffan, Hermann
last_name: Steffan
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Martin
full_name: Wilkening, Martin
last_name: Wilkening
- first_name: Marlena
full_name: Uitz, Marlena
last_name: Uitz
- first_name: Clemens
full_name: Fink, Clemens
last_name: Fink
- first_name: Alexander
full_name: Geier, Alexander
last_name: Geier
citation:
ama: Volck T, Sinz W, Gstrein G, et al. Method for determination of the internal
short resistance and heat evolution at different mechanical loads of a Lithium
ion battery cell based on dummy pouch cells. Batteries. 2016;2(2). doi:10.3390/batteries2020008
apa: Volck, T., Sinz, W., Gstrein, G., Breitfuss, C., Heindl, S., Steffan, H., …
Geier, A. (2016). Method for determination of the internal short resistance and
heat evolution at different mechanical loads of a Lithium ion battery cell based
on dummy pouch cells. Batteries. MDPI AG. https://doi.org/10.3390/batteries2020008
chicago: Volck, Theo, Wolfgang Sinz, Gregor Gstrein, Christoph Breitfuss, Simon
Heindl, Hermann Steffan, Stefan Alexander Freunberger, et al. “Method for Determination
of the Internal Short Resistance and Heat Evolution at Different Mechanical Loads
of a Lithium Ion Battery Cell Based on Dummy Pouch Cells.” Batteries. MDPI
AG, 2016. https://doi.org/10.3390/batteries2020008.
ieee: T. Volck et al., “Method for determination of the internal short resistance
and heat evolution at different mechanical loads of a Lithium ion battery cell
based on dummy pouch cells,” Batteries, vol. 2, no. 2. MDPI AG, 2016.
ista: Volck T, Sinz W, Gstrein G, Breitfuss C, Heindl S, Steffan H, Freunberger
SA, Wilkening M, Uitz M, Fink C, Geier A. 2016. Method for determination of the
internal short resistance and heat evolution at different mechanical loads of
a Lithium ion battery cell based on dummy pouch cells. Batteries. 2(2), 8.
mla: Volck, Theo, et al. “Method for Determination of the Internal Short Resistance
and Heat Evolution at Different Mechanical Loads of a Lithium Ion Battery Cell
Based on Dummy Pouch Cells.” Batteries, vol. 2, no. 2, 8, MDPI AG, 2016,
doi:10.3390/batteries2020008.
short: T. Volck, W. Sinz, G. Gstrein, C. Breitfuss, S. Heindl, H. Steffan, S.A.
Freunberger, M. Wilkening, M. Uitz, C. Fink, A. Geier, Batteries 2 (2016).
date_created: 2020-01-15T12:16:31Z
date_published: 2016-04-07T00:00:00Z
date_updated: 2021-01-12T08:12:50Z
day: '07'
doi: 10.3390/batteries2020008
extern: '1'
intvolume: ' 2'
issue: '2'
language:
- iso: eng
month: '04'
oa_version: Published Version
publication: Batteries
publication_identifier:
issn:
- 2313-0105
publication_status: published
publisher: MDPI AG
quality_controlled: '1'
status: public
title: Method for determination of the internal short resistance and heat evolution
at different mechanical loads of a Lithium ion battery cell based on dummy pouch
cells
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2016'
...
---
_id: '7297'
abstract:
- lang: eng
text: Redox mediators facilitate the oxidation of the highly insulating discharge
product in metal–oxygen batteries during recharge and offer opportunities to achieve
high reversible capacities. Now a design principle for selecting redox mediators
that can recharge the batteries more efficiently is suggested.
article_number: '16074'
article_processing_charge: No
article_type: original
author:
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
citation:
ama: 'Freunberger SA. Batteries: Charging ahead rationally. Nature Energy.
2016;1(6). doi:10.1038/nenergy.2016.74'
apa: 'Freunberger, S. A. (2016). Batteries: Charging ahead rationally. Nature
Energy. Springer Nature. https://doi.org/10.1038/nenergy.2016.74'
chicago: 'Freunberger, Stefan Alexander. “Batteries: Charging Ahead Rationally.”
Nature Energy. Springer Nature, 2016. https://doi.org/10.1038/nenergy.2016.74.'
ieee: 'S. A. Freunberger, “Batteries: Charging ahead rationally,” Nature Energy,
vol. 1, no. 6. Springer Nature, 2016.'
ista: 'Freunberger SA. 2016. Batteries: Charging ahead rationally. Nature Energy.
1(6), 16074.'
mla: 'Freunberger, Stefan Alexander. “Batteries: Charging Ahead Rationally.” Nature
Energy, vol. 1, no. 6, 16074, Springer Nature, 2016, doi:10.1038/nenergy.2016.74.'
short: S.A. Freunberger, Nature Energy 1 (2016).
date_created: 2020-01-15T12:16:40Z
date_published: 2016-05-23T00:00:00Z
date_updated: 2021-01-12T08:12:51Z
day: '23'
ddc:
- '540'
- '541'
- '547'
- '546'
doi: 10.1038/nenergy.2016.74
extern: '1'
file:
- access_level: open_access
checksum: d90d675947262f7437b483b251918df2
content_type: application/pdf
creator: sfreunbe
date_created: 2020-06-29T13:41:56Z
date_updated: 2020-07-14T12:47:55Z
file_id: '8047'
file_name: N&V Freunberger final.pdf
file_size: 197375
relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: ' 1'
issue: '6'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
publication: Nature Energy
publication_identifier:
issn:
- 2058-7546
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'Batteries: Charging ahead rationally'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2016'
...
---
_id: '7298'
abstract:
- lang: eng
text: Lithium-ion batteries are in widespread use in electric vehicles and hybrid
vehicles. Besides features like energy density, cost, lifetime, and recyclability
the safety of a battery system is of prime importance. The separator material
impacts all these properties and requires therefore an informed selection. The
interplay between the mechanical and electrochemical properties as key selection
criteria is investigated. Mechanical properties were investigated using tensile
and puncture penetration tests at abuse relevant conditions. To investigate the
electrochemical performance in terms of effective conductivity a method based
on impedance spectroscopy was introduced. This methodology is applied to evaluate
ten commercial separators which allows for a trade-off analysis of mechanical
versus electrochemical performance. Based on the results, and in combination with
other factors, this offers an effective approach to select suitable separators
for automotive applications.
article_processing_charge: No
article_type: original
author:
- first_name: Martin
full_name: Plaimer, Martin
last_name: Plaimer
- first_name: Christoph
full_name: Breitfuß, Christoph
last_name: Breitfuß
- first_name: Wolfgang
full_name: Sinz, Wolfgang
last_name: Sinz
- first_name: Simon F.
full_name: Heindl, Simon F.
last_name: Heindl
- first_name: Christian
full_name: Ellersdorfer, Christian
last_name: Ellersdorfer
- first_name: Hermann
full_name: Steffan, Hermann
last_name: Steffan
- first_name: Martin
full_name: Wilkening, Martin
last_name: Wilkening
- first_name: Volker
full_name: Hennige, Volker
last_name: Hennige
- first_name: Reinhard
full_name: Tatschl, Reinhard
last_name: Tatschl
- first_name: Alexander
full_name: Geier, Alexander
last_name: Geier
- first_name: Christian
full_name: Schramm, Christian
last_name: Schramm
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
citation:
ama: 'Plaimer M, Breitfuß C, Sinz W, et al. Evaluating the trade-off between mechanical
and electrochemical performance of separators for lithium-ion batteries: Methodology
and application. Journal of Power Sources. 2016;306(2):702-710. doi:10.1016/j.jpowsour.2015.12.047'
apa: 'Plaimer, M., Breitfuß, C., Sinz, W., Heindl, S. F., Ellersdorfer, C., Steffan,
H., … Freunberger, S. A. (2016). Evaluating the trade-off between mechanical and
electrochemical performance of separators for lithium-ion batteries: Methodology
and application. Journal of Power Sources. Elsevier. https://doi.org/10.1016/j.jpowsour.2015.12.047'
chicago: 'Plaimer, Martin, Christoph Breitfuß, Wolfgang Sinz, Simon F. Heindl, Christian
Ellersdorfer, Hermann Steffan, Martin Wilkening, et al. “Evaluating the Trade-off
between Mechanical and Electrochemical Performance of Separators for Lithium-Ion
Batteries: Methodology and Application.” Journal of Power Sources. Elsevier,
2016. https://doi.org/10.1016/j.jpowsour.2015.12.047.'
ieee: 'M. Plaimer et al., “Evaluating the trade-off between mechanical and
electrochemical performance of separators for lithium-ion batteries: Methodology
and application,” Journal of Power Sources, vol. 306, no. 2. Elsevier,
pp. 702–710, 2016.'
ista: 'Plaimer M, Breitfuß C, Sinz W, Heindl SF, Ellersdorfer C, Steffan H, Wilkening
M, Hennige V, Tatschl R, Geier A, Schramm C, Freunberger SA. 2016. Evaluating
the trade-off between mechanical and electrochemical performance of separators
for lithium-ion batteries: Methodology and application. Journal of Power Sources.
306(2), 702–710.'
mla: 'Plaimer, Martin, et al. “Evaluating the Trade-off between Mechanical and Electrochemical
Performance of Separators for Lithium-Ion Batteries: Methodology and Application.”
Journal of Power Sources, vol. 306, no. 2, Elsevier, 2016, pp. 702–10,
doi:10.1016/j.jpowsour.2015.12.047.'
short: M. Plaimer, C. Breitfuß, W. Sinz, S.F. Heindl, C. Ellersdorfer, H. Steffan,
M. Wilkening, V. Hennige, R. Tatschl, A. Geier, C. Schramm, S.A. Freunberger,
Journal of Power Sources 306 (2016) 702–710.
date_created: 2020-01-15T12:16:51Z
date_published: 2016-02-29T00:00:00Z
date_updated: 2021-01-12T08:12:51Z
day: '29'
doi: 10.1016/j.jpowsour.2015.12.047
extern: '1'
intvolume: ' 306'
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 702-710
publication: Journal of Power Sources
publication_identifier:
issn:
- 0378-7753
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Evaluating the trade-off between mechanical and electrochemical performance
of separators for lithium-ion batteries: Methodology and application'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 306
year: '2016'
...
---
_id: '7599'
abstract:
- lang: eng
text: Normal leaf margin development is important for leaf morphogenesis and contributes
to diverse leaf shapes in higher plants. We here show the crucial roles of an
atypical type II phosphatidylinositol 4-kinase, PI4Kγ5, in Arabidopsis leaf margin
development. PI4Kγ5 presents a dynamics expression pattern along with leaf development
and a T-DNA mutant lacking PI4Kγ5, pi4kγ5–1, presents serrated leaves, which is
resulted from the accelerated cell division and increased auxin concentration
at serration tips. Studies revealed that PI4Kγ5 interacts with and phosphorylates
a membrane-bound NAC transcription factor, ANAC078. Previous studies demonstrated
that membrane-bound transcription factors regulate gene transcription by undergoing
proteolytic process to translocate into nucleus, and ANAC078 undergoes proteolysis
by cleaving off the transmembrane region and carboxyl terminal. Western blot analysis
indeed showed that ANAC078 deleting of carboxyl terminal is significantly reduced
in pi4kγ5–1, indicating that PI4Kγ5 is important for the cleavage of ANAC078.
This is consistent with the subcellular localization observation showing that
fluorescence by GFP-ANAC078 is detected at plasma membrane but not nucleus in
pi4kγ5–1 mutant and that expression of ANAC078 deleting of carboxyl terminal,
driven by PI4Kγ5 promoter, could rescue the leaf serration defects of pi4kγ5–1.
Further analysis showed that ANAC078 suppresses the auxin synthesis by directly
binding and regulating the expression of auxin synthesis-related genes. These
results indicate that PI4Kγ5 interacts with ANAC078 to negatively regulate auxin
synthesis and hence influences cell proliferation and leaf development, providing
informative clues for the regulation of in situ auxin synthesis and cell division,
as well as the cleavage and functional mechanism of membrane-bound transcription
factors.
article_number: e1006252
article_processing_charge: No
article_type: original
author:
- first_name: Yong
full_name: Tang, Yong
last_name: Tang
- first_name: Chun-Yan
full_name: Zhao, Chun-Yan
last_name: Zhao
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Hong-Wei
full_name: Xue, Hong-Wei
last_name: Xue
citation:
ama: Tang Y, Zhao C-Y, Tan S, Xue H-W. Arabidopsis type II phosphatidylinositol
4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through
interacting with membrane-bound transcription factor ANAC078. PLOS Genetics.
2016;12(8). doi:10.1371/journal.pgen.1006252
apa: Tang, Y., Zhao, C.-Y., Tan, S., & Xue, H.-W. (2016). Arabidopsis type II
phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin
development through interacting with membrane-bound transcription factor ANAC078.
PLOS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1006252
chicago: Tang, Yong, Chun-Yan Zhao, Shutang Tan, and Hong-Wei Xue. “Arabidopsis
Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and
Leaf Margin Development through Interacting with Membrane-Bound Transcription
Factor ANAC078.” PLOS Genetics. Public Library of Science, 2016. https://doi.org/10.1371/journal.pgen.1006252.
ieee: Y. Tang, C.-Y. Zhao, S. Tan, and H.-W. Xue, “Arabidopsis type II phosphatidylinositol
4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through
interacting with membrane-bound transcription factor ANAC078,” PLOS Genetics,
vol. 12, no. 8. Public Library of Science, 2016.
ista: Tang Y, Zhao C-Y, Tan S, Xue H-W. 2016. Arabidopsis type II phosphatidylinositol
4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through
interacting with membrane-bound transcription factor ANAC078. PLOS Genetics. 12(8),
e1006252.
mla: Tang, Yong, et al. “Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5
Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with
Membrane-Bound Transcription Factor ANAC078.” PLOS Genetics, vol. 12, no.
8, e1006252, Public Library of Science, 2016, doi:10.1371/journal.pgen.1006252.
short: Y. Tang, C.-Y. Zhao, S. Tan, H.-W. Xue, PLOS Genetics 12 (2016).
date_created: 2020-03-21T16:08:33Z
date_published: 2016-08-16T00:00:00Z
date_updated: 2021-01-12T08:14:25Z
day: '16'
ddc:
- '580'
doi: 10.1371/journal.pgen.1006252
extern: '1'
file:
- access_level: open_access
checksum: ff0ab9a6bed11cda800a6e59820866a0
content_type: application/pdf
creator: dernst
date_created: 2020-03-23T12:15:31Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7612'
file_name: 2016_PlosGenetics_Tang.PDF
file_size: 3266119
relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: ' 12'
issue: '8'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '08'
oa: 1
oa_version: Published Version
publication: PLOS Genetics
publication_identifier:
issn:
- 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: Arabidopsis type II phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis
and leaf margin development through interacting with membrane-bound transcription
factor ANAC078
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2016'
...
---
_id: '7734'
abstract:
- lang: eng
text: "Importance: Considerable partner resemblances have been found for a wide
range of psychiatric disorders, meaning that partners of affected individuals
have an increased risk of being affected compared with partners of unaffected
individuals. If this resemblance is reflected in genetic similarity between partners,
genetic risk is anticipated to accumulate in offspring, but these potential consequences
have not been quantified and have been left implicit.\r\n\r\nObservations: The
anticipated consequences of partner resemblance on prevalence and heritability
of psychiatric traits in the offspring generation were modeled for disorders with
varying heritabilities, population prevalence (lifetime risk), and magnitudes
of partner resemblance. These models facilitate interpretation for a wide range
of psychiatric disorders, such as autism, schizophrenia, and depression. The genetic
consequences of partner resemblance are most pronounced when attributable to phenotypic
assortment (driven by the psychiatric trait). Phenotypic assortment results in
increased genetic variance in the offspring generation, which may result in increased
heritability and population prevalence. These consequences add generation after
generation to a limit, but assortative mating is unlikely to balance the impact
of reduced fecundity of patients with psychiatric disorders in the long term.
This modeling suggests that the heritabilities of psychiatric disorders are unlikely
to increase by more than 5% from 1 generation of assortative mating (maximally
13% across multiple generations). The population prevalence will increase most
for less common disorders with high heritability; for example, the prevalence
of autism might increase by 1.5-fold after 1 generation of assortative mating
(≥2.4-fold in the long term) depending on several assumptions.\r\n\r\nConclusions
and Relevance: The considerable partner resemblances found for psychiatric disorders
deserve more detailed interpretation than has been provided thus far. Although
the limitations of modeling are emphasized, the anticipated consequences are at
most modest for the heritability but may be considerable for the population prevalence
of rare disorders with a high heritability."
article_processing_charge: No
article_type: original
author:
- first_name: Wouter J.
full_name: Peyrot, Wouter J.
last_name: Peyrot
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
- first_name: Brenda W. J. H.
full_name: Penninx, Brenda W. J. H.
last_name: Penninx
- first_name: Naomi R.
full_name: Wray, Naomi R.
last_name: Wray
citation:
ama: Peyrot WJ, Robinson MR, Penninx BWJH, Wray NR. Exploring boundaries for the
genetic consequences of assortative mating for psychiatric traits. JAMA Psychiatry.
2016;73(11):1189-1195. doi:10.1001/jamapsychiatry.2016.2566
apa: Peyrot, W. J., Robinson, M. R., Penninx, B. W. J. H., & Wray, N. R. (2016).
Exploring boundaries for the genetic consequences of assortative mating for psychiatric
traits. JAMA Psychiatry. American Medical Association. https://doi.org/10.1001/jamapsychiatry.2016.2566
chicago: Peyrot, Wouter J., Matthew Richard Robinson, Brenda W. J. H. Penninx, and
Naomi R. Wray. “Exploring Boundaries for the Genetic Consequences of Assortative
Mating for Psychiatric Traits.” JAMA Psychiatry. American Medical Association,
2016. https://doi.org/10.1001/jamapsychiatry.2016.2566.
ieee: W. J. Peyrot, M. R. Robinson, B. W. J. H. Penninx, and N. R. Wray, “Exploring
boundaries for the genetic consequences of assortative mating for psychiatric
traits,” JAMA Psychiatry, vol. 73, no. 11. American Medical Association,
pp. 1189–1195, 2016.
ista: Peyrot WJ, Robinson MR, Penninx BWJH, Wray NR. 2016. Exploring boundaries
for the genetic consequences of assortative mating for psychiatric traits. JAMA
Psychiatry. 73(11), 1189–1195.
mla: Peyrot, Wouter J., et al. “Exploring Boundaries for the Genetic Consequences
of Assortative Mating for Psychiatric Traits.” JAMA Psychiatry, vol. 73,
no. 11, American Medical Association, 2016, pp. 1189–95, doi:10.1001/jamapsychiatry.2016.2566.
short: W.J. Peyrot, M.R. Robinson, B.W.J.H. Penninx, N.R. Wray, JAMA Psychiatry
73 (2016) 1189–1195.
date_created: 2020-04-30T10:48:41Z
date_published: 2016-11-01T00:00:00Z
date_updated: 2021-01-12T08:15:11Z
day: '01'
doi: 10.1001/jamapsychiatry.2016.2566
extern: '1'
intvolume: ' 73'
issue: '11'
language:
- iso: eng
month: '11'
oa_version: None
page: 1189-1195
publication: JAMA Psychiatry
publication_identifier:
issn:
- 2168-622X
publication_status: published
publisher: American Medical Association
quality_controlled: '1'
status: public
title: Exploring boundaries for the genetic consequences of assortative mating for
psychiatric traits
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 73
year: '2016'
...
---
_id: '7736'
abstract:
- lang: eng
text: We develop a novel approach to identify regions of the genome underlying population
genetic differentiation in any genetic data where the underlying population structure
is unknown, or where the interest is assessing divergence along a gradient. By
combining the statistical framework for genome-wide association studies (GWASs)
with eigenvector decomposition (EigenGWAS), which is commonly used in population
genetics to characterize the structure of genetic data, loci under selection can
be identified without a requirement for discrete populations. We show through
theory and simulation that our approach can identify regions under selection along
gradients of ancestry, and in real data we confirm this by demonstrating LCT to
be under selection between HapMap CEU–TSI cohorts, and we then validate this selection
signal across European countries in the POPRES samples. HERC2 was also found to
be differentiated between both the CEU–TSI cohort and within the POPRES sample,
reflecting the likely anthropological differences in skin and hair colour between
northern and southern European populations. Controlling for population stratification
is of great importance in any quantitative genetic study and our approach also
provides a simple, fast and accurate way of predicting principal components in
independent samples. With ever increasing sample sizes across many fields, this
approach is likely to be greatly utilized to gain individual-level eigenvectors
avoiding the computational challenges associated with conducting singular value
decomposition in large data sets. We have developed freely available software,
Genetic Analysis Repository (GEAR), to facilitate the application of the methods.
article_processing_charge: No
article_type: original
author:
- first_name: G-B
full_name: Chen, G-B
last_name: Chen
- first_name: S H
full_name: Lee, S H
last_name: Lee
- first_name: Z-X
full_name: Zhu, Z-X
last_name: Zhu
- first_name: B
full_name: Benyamin, B
last_name: Benyamin
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: 'Chen G-B, Lee SH, Zhu Z-X, Benyamin B, Robinson MR. EigenGWAS: Finding loci
under selection through genome-wide association studies of eigenvectors in structured
populations. Heredity. 2016;117:51-61. doi:10.1038/hdy.2016.25'
apa: 'Chen, G.-B., Lee, S. H., Zhu, Z.-X., Benyamin, B., & Robinson, M. R. (2016).
EigenGWAS: Finding loci under selection through genome-wide association studies
of eigenvectors in structured populations. Heredity. Springer Nature. https://doi.org/10.1038/hdy.2016.25'
chicago: 'Chen, G-B, S H Lee, Z-X Zhu, B Benyamin, and Matthew Richard Robinson.
“EigenGWAS: Finding Loci under Selection through Genome-Wide Association Studies
of Eigenvectors in Structured Populations.” Heredity. Springer Nature,
2016. https://doi.org/10.1038/hdy.2016.25.'
ieee: 'G.-B. Chen, S. H. Lee, Z.-X. Zhu, B. Benyamin, and M. R. Robinson, “EigenGWAS:
Finding loci under selection through genome-wide association studies of eigenvectors
in structured populations,” Heredity, vol. 117. Springer Nature, pp. 51–61,
2016.'
ista: 'Chen G-B, Lee SH, Zhu Z-X, Benyamin B, Robinson MR. 2016. EigenGWAS: Finding
loci under selection through genome-wide association studies of eigenvectors in
structured populations. Heredity. 117, 51–61.'
mla: 'Chen, G. B., et al. “EigenGWAS: Finding Loci under Selection through Genome-Wide
Association Studies of Eigenvectors in Structured Populations.” Heredity,
vol. 117, Springer Nature, 2016, pp. 51–61, doi:10.1038/hdy.2016.25.'
short: G.-B. Chen, S.H. Lee, Z.-X. Zhu, B. Benyamin, M.R. Robinson, Heredity 117
(2016) 51–61.
date_created: 2020-04-30T10:50:03Z
date_published: 2016-05-04T00:00:00Z
date_updated: 2021-01-12T08:15:11Z
day: '04'
doi: 10.1038/hdy.2016.25
extern: '1'
intvolume: ' 117'
language:
- iso: eng
month: '05'
oa_version: None
page: 51-61
publication: Heredity
publication_identifier:
issn:
- 0018-067X
- 1365-2540
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'EigenGWAS: Finding loci under selection through genome-wide association studies
of eigenvectors in structured populations'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 117
year: '2016'
...
---
_id: '7737'
abstract:
- lang: eng
text: Genome-wide association studies (GWAS) have identified thousands of genetic
variants associated with human complex traits. However, the genes or functional
DNA elements through which these variants exert their effects on the traits are
often unknown. We propose a method (called SMR) that integrates summary-level
data from GWAS with data from expression quantitative trait locus (eQTL) studies
to identify genes whose expression levels are associated with a complex trait
because of pleiotropy. We apply the method to five human complex traits using
GWAS data on up to 339,224 individuals and eQTL data on 5,311 individuals, and
we prioritize 126 genes (for example, TRAF1 and ANKRD55 for rheumatoid arthritis
and SNX19 and NMRAL1 for schizophrenia), of which 25 genes are new candidates;
77 genes are not the nearest annotated gene to the top associated GWAS SNP. These
genes provide important leads to design future functional studies to understand
the mechanism whereby DNA variation leads to complex trait variation.
article_processing_charge: No
article_type: original
author:
- first_name: Zhihong
full_name: Zhu, Zhihong
last_name: Zhu
- first_name: Futao
full_name: Zhang, Futao
last_name: Zhang
- first_name: Han
full_name: Hu, Han
last_name: Hu
- first_name: Andrew
full_name: Bakshi, Andrew
last_name: Bakshi
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
- first_name: Joseph E
full_name: Powell, Joseph E
last_name: Powell
- first_name: Grant W
full_name: Montgomery, Grant W
last_name: Montgomery
- first_name: Michael E
full_name: Goddard, Michael E
last_name: Goddard
- first_name: Naomi R
full_name: Wray, Naomi R
last_name: Wray
- first_name: Peter M
full_name: Visscher, Peter M
last_name: Visscher
- first_name: Jian
full_name: Yang, Jian
last_name: Yang
citation:
ama: Zhu Z, Zhang F, Hu H, et al. Integration of summary data from GWAS and eQTL
studies predicts complex trait gene targets. Nature Genetics. 2016;48(5):481-487.
doi:10.1038/ng.3538
apa: Zhu, Z., Zhang, F., Hu, H., Bakshi, A., Robinson, M. R., Powell, J. E., … Yang,
J. (2016). Integration of summary data from GWAS and eQTL studies predicts complex
trait gene targets. Nature Genetics. Springer Nature. https://doi.org/10.1038/ng.3538
chicago: Zhu, Zhihong, Futao Zhang, Han Hu, Andrew Bakshi, Matthew Richard Robinson,
Joseph E Powell, Grant W Montgomery, et al. “Integration of Summary Data from
GWAS and EQTL Studies Predicts Complex Trait Gene Targets.” Nature Genetics.
Springer Nature, 2016. https://doi.org/10.1038/ng.3538.
ieee: Z. Zhu et al., “Integration of summary data from GWAS and eQTL studies
predicts complex trait gene targets,” Nature Genetics, vol. 48, no. 5.
Springer Nature, pp. 481–487, 2016.
ista: Zhu Z, Zhang F, Hu H, Bakshi A, Robinson MR, Powell JE, Montgomery GW, Goddard
ME, Wray NR, Visscher PM, Yang J. 2016. Integration of summary data from GWAS
and eQTL studies predicts complex trait gene targets. Nature Genetics. 48(5),
481–487.
mla: Zhu, Zhihong, et al. “Integration of Summary Data from GWAS and EQTL Studies
Predicts Complex Trait Gene Targets.” Nature Genetics, vol. 48, no. 5,
Springer Nature, 2016, pp. 481–87, doi:10.1038/ng.3538.
short: Z. Zhu, F. Zhang, H. Hu, A. Bakshi, M.R. Robinson, J.E. Powell, G.W. Montgomery,
M.E. Goddard, N.R. Wray, P.M. Visscher, J. Yang, Nature Genetics 48 (2016) 481–487.
date_created: 2020-04-30T10:50:26Z
date_published: 2016-03-28T00:00:00Z
date_updated: 2021-01-12T08:15:11Z
day: '28'
doi: 10.1038/ng.3538
extern: '1'
intvolume: ' 48'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/ng.3538
month: '03'
oa: 1
oa_version: Published Version
page: 481-487
publication: Nature Genetics
publication_identifier:
issn:
- 1061-4036
- 1546-1718
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Integration of summary data from GWAS and eQTL studies predicts complex trait
gene targets
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2016'
...
---
_id: '7760'
abstract:
- lang: eng
text: We propose a Widom-like scaling ansatz for the critical jamming transition.
Our ansatz for the elastic energy shows that the scaling of the energy, compressive
strain, shear strain, system size, pressure, shear stress, bulk modulus, and shear
modulus are all related to each other via scaling relations, with only three independent
scaling exponents. We extract the values of these exponents from already known
numerical or theoretical results, and we numerically verify the resulting predictions
of the scaling theory for the energy and residual shear stress. We also derive
a scaling relation between pressure and residual shear stress that yields insight
into why the shear and bulk moduli scale differently. Our theory shows that the
jamming transition exhibits an emergent scale invariance, setting the stage for
the potential development of a renormalization group theory for jamming.
article_processing_charge: No
article_type: original
author:
- first_name: Carl Peter
full_name: Goodrich, Carl Peter
id: EB352CD2-F68A-11E9-89C5-A432E6697425
last_name: Goodrich
orcid: 0000-0002-1307-5074
- first_name: Andrea J.
full_name: Liu, Andrea J.
last_name: Liu
- first_name: James P.
full_name: Sethna, James P.
last_name: Sethna
citation:
ama: Goodrich CP, Liu AJ, Sethna JP. Scaling ansatz for the jamming transition.
Proceedings of the National Academy of Sciences. 2016;113(35):9745-9750.
doi:10.1073/pnas.1601858113
apa: Goodrich, C. P., Liu, A. J., & Sethna, J. P. (2016). Scaling ansatz for
the jamming transition. Proceedings of the National Academy of Sciences.
Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1601858113
chicago: Goodrich, Carl Peter, Andrea J. Liu, and James P. Sethna. “Scaling Ansatz
for the Jamming Transition.” Proceedings of the National Academy of Sciences.
Proceedings of the National Academy of Sciences, 2016. https://doi.org/10.1073/pnas.1601858113.
ieee: C. P. Goodrich, A. J. Liu, and J. P. Sethna, “Scaling ansatz for the jamming
transition,” Proceedings of the National Academy of Sciences, vol. 113,
no. 35. Proceedings of the National Academy of Sciences, pp. 9745–9750, 2016.
ista: Goodrich CP, Liu AJ, Sethna JP. 2016. Scaling ansatz for the jamming transition.
Proceedings of the National Academy of Sciences. 113(35), 9745–9750.
mla: Goodrich, Carl Peter, et al. “Scaling Ansatz for the Jamming Transition.” Proceedings
of the National Academy of Sciences, vol. 113, no. 35, Proceedings of the
National Academy of Sciences, 2016, pp. 9745–50, doi:10.1073/pnas.1601858113.
short: C.P. Goodrich, A.J. Liu, J.P. Sethna, Proceedings of the National Academy
of Sciences 113 (2016) 9745–9750.
date_created: 2020-04-30T11:39:53Z
date_published: 2016-08-30T00:00:00Z
date_updated: 2021-01-12T08:15:21Z
day: '30'
doi: 10.1073/pnas.1601858113
extern: '1'
intvolume: ' 113'
issue: '35'
language:
- iso: eng
month: '08'
oa_version: None
page: 9745-9750
publication: Proceedings of the National Academy of Sciences
publication_identifier:
issn:
- 0027-8424
- 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
status: public
title: Scaling ansatz for the jamming transition
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 113
year: '2016'
...
---
_id: '7761'
abstract:
- lang: eng
text: We study the effect of dilute pinning on the jamming transition. Pinning reduces
the average contact number needed to jam unpinned particles and shifts the jamming
threshold to lower densities, leading to a pinning susceptibility, χp. Our main
results are that this susceptibility obeys scaling form and diverges in the thermodynamic
limit as χp∝|ϕ−ϕ∞c|−γp where ϕ∞c is the jamming threshold in the absence of pins.
Finite-size scaling arguments yield these values with associated statistical (systematic)
errors γp=1.018±0.026(0.291) in d=2 and γp=1.534±0.120(0.822) in d=3. Logarithmic
corrections raise the exponent in d=2 to close to the d=3 value, although the
systematic errors are very large.
article_number: '235501'
article_processing_charge: No
article_type: original
author:
- first_name: Amy L.
full_name: Graves, Amy L.
last_name: Graves
- first_name: Samer
full_name: Nashed, Samer
last_name: Nashed
- first_name: Elliot
full_name: Padgett, Elliot
last_name: Padgett
- first_name: Carl Peter
full_name: Goodrich, Carl Peter
id: EB352CD2-F68A-11E9-89C5-A432E6697425
last_name: Goodrich
orcid: 0000-0002-1307-5074
- first_name: Andrea J.
full_name: Liu, Andrea J.
last_name: Liu
- first_name: James P.
full_name: Sethna, James P.
last_name: Sethna
citation:
ama: 'Graves AL, Nashed S, Padgett E, Goodrich CP, Liu AJ, Sethna JP. Pinning susceptibility:
The effect of dilute, quenched disorder on jamming. Physical Review Letters.
2016;116(23). doi:10.1103/physrevlett.116.235501'
apa: 'Graves, A. L., Nashed, S., Padgett, E., Goodrich, C. P., Liu, A. J., &
Sethna, J. P. (2016). Pinning susceptibility: The effect of dilute, quenched disorder
on jamming. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.116.235501'
chicago: 'Graves, Amy L., Samer Nashed, Elliot Padgett, Carl Peter Goodrich, Andrea
J. Liu, and James P. Sethna. “Pinning Susceptibility: The Effect of Dilute, Quenched
Disorder on Jamming.” Physical Review Letters. American Physical Society,
2016. https://doi.org/10.1103/physrevlett.116.235501.'
ieee: 'A. L. Graves, S. Nashed, E. Padgett, C. P. Goodrich, A. J. Liu, and J. P.
Sethna, “Pinning susceptibility: The effect of dilute, quenched disorder on jamming,”
Physical Review Letters, vol. 116, no. 23. American Physical Society, 2016.'
ista: 'Graves AL, Nashed S, Padgett E, Goodrich CP, Liu AJ, Sethna JP. 2016. Pinning
susceptibility: The effect of dilute, quenched disorder on jamming. Physical Review
Letters. 116(23), 235501.'
mla: 'Graves, Amy L., et al. “Pinning Susceptibility: The Effect of Dilute, Quenched
Disorder on Jamming.” Physical Review Letters, vol. 116, no. 23, 235501,
American Physical Society, 2016, doi:10.1103/physrevlett.116.235501.'
short: A.L. Graves, S. Nashed, E. Padgett, C.P. Goodrich, A.J. Liu, J.P. Sethna,
Physical Review Letters 116 (2016).
date_created: 2020-04-30T11:40:10Z
date_published: 2016-06-10T00:00:00Z
date_updated: 2021-01-12T08:15:21Z
day: '10'
doi: 10.1103/physrevlett.116.235501
extern: '1'
intvolume: ' 116'
issue: '23'
language:
- iso: eng
month: '06'
oa_version: None
publication: Physical Review Letters
publication_identifier:
issn:
- 0031-9007
- 1079-7114
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: 'Pinning susceptibility: The effect of dilute, quenched disorder on jamming'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 116
year: '2016'
...
---
_id: '7762'
abstract:
- lang: eng
text: Characterizing structural inhomogeneity is an essential step in understanding
the mechanical response of amorphous materials. We introduce a threshold-free
measure based on the field of vectors pointing from the center of each particle
to the centroid of the Voronoi cell in which the particle resides. These vectors
tend to point in toward regions of high free volume and away from regions of low
free volume, reminiscent of sinks and sources in a vector field. We compute the
local divergence of these vectors, where positive values correspond to overpacked
regions and negative values identify underpacked regions within the material.
Distributions of this divergence are nearly Gaussian with zero mean, allowing
for structural characterization using only the moments of the distribution. We
explore how the standard deviation and skewness vary with the packing fraction
for simulations of bidisperse systems and find a kink in these moments that coincides
with the jamming transition.
article_number: '088001 '
article_processing_charge: No
article_type: original
author:
- first_name: Jennifer M.
full_name: Rieser, Jennifer M.
last_name: Rieser
- first_name: Carl Peter
full_name: Goodrich, Carl Peter
id: EB352CD2-F68A-11E9-89C5-A432E6697425
last_name: Goodrich
orcid: 0000-0002-1307-5074
- first_name: Andrea J.
full_name: Liu, Andrea J.
last_name: Liu
- first_name: Douglas J.
full_name: Durian, Douglas J.
last_name: Durian
citation:
ama: 'Rieser JM, Goodrich CP, Liu AJ, Durian DJ. Divergence of Voronoi cell anisotropy
vector: A threshold-free characterization of local structure in amorphous materials.
Physical Review Letters. 2016;116(8). doi:10.1103/physrevlett.116.088001'
apa: 'Rieser, J. M., Goodrich, C. P., Liu, A. J., & Durian, D. J. (2016). Divergence
of Voronoi cell anisotropy vector: A threshold-free characterization of local
structure in amorphous materials. Physical Review Letters. American Physical
Society. https://doi.org/10.1103/physrevlett.116.088001'
chicago: 'Rieser, Jennifer M., Carl Peter Goodrich, Andrea J. Liu, and Douglas J.
Durian. “Divergence of Voronoi Cell Anisotropy Vector: A Threshold-Free Characterization
of Local Structure in Amorphous Materials.” Physical Review Letters. American
Physical Society, 2016. https://doi.org/10.1103/physrevlett.116.088001.'
ieee: 'J. M. Rieser, C. P. Goodrich, A. J. Liu, and D. J. Durian, “Divergence of
Voronoi cell anisotropy vector: A threshold-free characterization of local structure
in amorphous materials,” Physical Review Letters, vol. 116, no. 8. American
Physical Society, 2016.'
ista: 'Rieser JM, Goodrich CP, Liu AJ, Durian DJ. 2016. Divergence of Voronoi cell
anisotropy vector: A threshold-free characterization of local structure in amorphous
materials. Physical Review Letters. 116(8), 088001.'
mla: 'Rieser, Jennifer M., et al. “Divergence of Voronoi Cell Anisotropy Vector:
A Threshold-Free Characterization of Local Structure in Amorphous Materials.”
Physical Review Letters, vol. 116, no. 8, 088001, American Physical Society,
2016, doi:10.1103/physrevlett.116.088001.'
short: J.M. Rieser, C.P. Goodrich, A.J. Liu, D.J. Durian, Physical Review Letters
116 (2016).
date_created: 2020-04-30T11:40:25Z
date_published: 2016-02-23T00:00:00Z
date_updated: 2021-01-12T08:15:22Z
day: '23'
doi: 10.1103/physrevlett.116.088001
extern: '1'
intvolume: ' 116'
issue: '8'
language:
- iso: eng
month: '02'
oa_version: None
publication: Physical Review Letters
publication_identifier:
issn:
- 0031-9007
- 1079-7114
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: 'Divergence of Voronoi cell anisotropy vector: A threshold-free characterization
of local structure in amorphous materials'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 116
year: '2016'
...
---
_id: '7763'
abstract:
- lang: eng
text: An orthogonal wavelet basis is characterized by its approximation order, which
relates to the ability of the basis to represent general smooth functions on a
given scale. It is known, though perhaps not widely known, that there are ways
of exceeding the approximation order, i.e., achieving higher-order error in the
discretized wavelet transform and its inverse. The focus here is on the development
of a practical formulation to accomplish this first for 1D smooth functions, then
for 1D functions with discontinuities and then for multidimensional (here 2D)
functions with discontinuities. It is shown how to transcend both the wavelet
approximation order and the 2D Gibbs phenomenon in representing electromagnetic
fields at discontinuous dielectric interfaces that do not simply follow the wavelet-basis
grid.
article_processing_charge: No
article_type: original
author:
- first_name: Richard
full_name: Lombardini, Richard
last_name: Lombardini
- first_name: Ramiro
full_name: Acevedo, Ramiro
last_name: Acevedo
- first_name: Alexander
full_name: Kuczala, Alexander
last_name: Kuczala
- first_name: Kerry P.
full_name: Keys, Kerry P.
last_name: Keys
- first_name: Carl Peter
full_name: Goodrich, Carl Peter
id: EB352CD2-F68A-11E9-89C5-A432E6697425
last_name: Goodrich
orcid: 0000-0002-1307-5074
- first_name: Bruce R.
full_name: Johnson, Bruce R.
last_name: Johnson
citation:
ama: Lombardini R, Acevedo R, Kuczala A, Keys KP, Goodrich CP, Johnson BR. Higher-order
wavelet reconstruction/differentiation filters and Gibbs phenomena. Journal
of Computational Physics. 2016;305:244-262. doi:10.1016/j.jcp.2015.10.035
apa: Lombardini, R., Acevedo, R., Kuczala, A., Keys, K. P., Goodrich, C. P., &
Johnson, B. R. (2016). Higher-order wavelet reconstruction/differentiation filters
and Gibbs phenomena. Journal of Computational Physics. Elsevier. https://doi.org/10.1016/j.jcp.2015.10.035
chicago: Lombardini, Richard, Ramiro Acevedo, Alexander Kuczala, Kerry P. Keys,
Carl Peter Goodrich, and Bruce R. Johnson. “Higher-Order Wavelet Reconstruction/Differentiation
Filters and Gibbs Phenomena.” Journal of Computational Physics. Elsevier,
2016. https://doi.org/10.1016/j.jcp.2015.10.035.
ieee: R. Lombardini, R. Acevedo, A. Kuczala, K. P. Keys, C. P. Goodrich, and B.
R. Johnson, “Higher-order wavelet reconstruction/differentiation filters and Gibbs
phenomena,” Journal of Computational Physics, vol. 305. Elsevier, pp. 244–262,
2016.
ista: Lombardini R, Acevedo R, Kuczala A, Keys KP, Goodrich CP, Johnson BR. 2016.
Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena.
Journal of Computational Physics. 305, 244–262.
mla: Lombardini, Richard, et al. “Higher-Order Wavelet Reconstruction/Differentiation
Filters and Gibbs Phenomena.” Journal of Computational Physics, vol. 305,
Elsevier, 2016, pp. 244–62, doi:10.1016/j.jcp.2015.10.035.
short: R. Lombardini, R. Acevedo, A. Kuczala, K.P. Keys, C.P. Goodrich, B.R. Johnson,
Journal of Computational Physics 305 (2016) 244–262.
date_created: 2020-04-30T11:40:41Z
date_published: 2016-01-15T00:00:00Z
date_updated: 2021-01-12T08:15:22Z
day: '15'
doi: 10.1016/j.jcp.2015.10.035
extern: '1'
intvolume: ' 305'
language:
- iso: eng
month: '01'
oa_version: None
page: 244-262
publication: Journal of Computational Physics
publication_identifier:
issn:
- 0021-9991
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 305
year: '2016'
...
---
_id: '7764'
abstract:
- lang: eng
text: States of self stress, organizations of internal forces in many-body systems
that are in equilibrium with an absence of external forces, can be thought of
as the constitutive building blocks of the elastic response of a material. In
overconstrained disordered packings they have a natural mathematical correspondence
with the zero-energy vibrational modes in underconstrained systems. While substantial
attention in the literature has been paid to diverging length scales associated
with zero- and finite-energy vibrational modes in jammed systems, less is known
about the spatial structure of the states of self stress. In this work we define
a natural way in which a unique state of self stress can be associated with each
bond in a disordered spring network derived from a jammed packing, and then investigate
the spatial structure of these bond-localized states of self stress. This allows
for an understanding of how the elastic properties of a system would change upon
changing the strength or even existence of any bond in the system.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel M.
full_name: Sussman, Daniel M.
last_name: Sussman
- first_name: Carl Peter
full_name: Goodrich, Carl Peter
id: EB352CD2-F68A-11E9-89C5-A432E6697425
last_name: Goodrich
orcid: 0000-0002-1307-5074
- first_name: Andrea J.
full_name: Liu, Andrea J.
last_name: Liu
citation:
ama: Sussman DM, Goodrich CP, Liu AJ. Spatial structure of states of self stress
in jammed systems. Soft Matter. 2016;12(17):3982-3990. doi:10.1039/c6sm00094k
apa: Sussman, D. M., Goodrich, C. P., & Liu, A. J. (2016). Spatial structure
of states of self stress in jammed systems. Soft Matter. Royal Society
of Chemistry. https://doi.org/10.1039/c6sm00094k
chicago: Sussman, Daniel M., Carl Peter Goodrich, and Andrea J. Liu. “Spatial Structure
of States of Self Stress in Jammed Systems.” Soft Matter. Royal Society
of Chemistry, 2016. https://doi.org/10.1039/c6sm00094k.
ieee: D. M. Sussman, C. P. Goodrich, and A. J. Liu, “Spatial structure of states
of self stress in jammed systems,” Soft Matter, vol. 12, no. 17. Royal
Society of Chemistry, pp. 3982–3990, 2016.
ista: Sussman DM, Goodrich CP, Liu AJ. 2016. Spatial structure of states of self
stress in jammed systems. Soft Matter. 12(17), 3982–3990.
mla: Sussman, Daniel M., et al. “Spatial Structure of States of Self Stress in Jammed
Systems.” Soft Matter, vol. 12, no. 17, Royal Society of Chemistry, 2016,
pp. 3982–90, doi:10.1039/c6sm00094k.
short: D.M. Sussman, C.P. Goodrich, A.J. Liu, Soft Matter 12 (2016) 3982–3990.
date_created: 2020-04-30T11:40:56Z
date_published: 2016-03-14T00:00:00Z
date_updated: 2021-01-12T08:15:22Z
day: '14'
doi: 10.1039/c6sm00094k
extern: '1'
intvolume: ' 12'
issue: '17'
language:
- iso: eng
month: '03'
oa_version: None
page: 3982-3990
publication: Soft Matter
publication_identifier:
issn:
- 1744-683X
- 1744-6848
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
related_material:
link:
- relation: other
url: https://doi.org/10.1039/c6sm02496c
status: public
title: Spatial structure of states of self stress in jammed systems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2016'
...
---
_id: '785'
abstract:
- lang: eng
text: High memory contention is generally agreed to be a worst-case scenario for
concurrent data structures. There has been a significant amount of research effort
spent investigating designs which minimize contention, and several programming
techniques have been proposed to mitigate its effects. However, there are currently
few architectural mechanisms to allow scaling contended data structures at high
thread counts. In this paper, we investigate hardware support for scalable contended
data structures. We propose Lease/Release, a simple addition to standard directory-based
MSI cache coherence protocols, allowing participants to lease memory, at the granularity
of cache lines, by delaying coherence messages for a short, bounded period of
time. Our analysis shows that Lease/Release can significantly reduce the overheads
of contention for both non-blocking (lock-free) and lock-based data structure
implementations, while ensuring that no deadlocks are introduced. We validate
Lease/Release empirically on the Graphite multiprocessor simulator, on a range
of data structures, including queue, stack, and priority queue implementations,
as well as on transactional applications. Results show that Lease/Release consistently
improves both throughput and energy usage, by up to 5x, both for lock-free and
lock-based data structure designs.
acknowledgement: We would like to thank Richard Black, Miguel Castro, Dave Dice, Aleksandar
Dragojevic, Maurice Herlihy, Ant Rowstron, Nir Shavit, and Vasileios Trigonakis,
as well as the anonymous reviewers, for helpful suggestions during the development
of this paper.
article_processing_charge: No
author:
- first_name: Syed
full_name: Haider, Syed
last_name: Haider
- first_name: William
full_name: Hasenplaugh, William
last_name: Hasenplaugh
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Haider S, Hasenplaugh W, Alistarh D-A. Lease/Release: Architectural support
for scaling contended data structures. In: Vol 12-16-March-2016. ACM; 2016. doi:10.1145/2851141.2851155'
apa: 'Haider, S., Hasenplaugh, W., & Alistarh, D.-A. (2016). Lease/Release:
Architectural support for scaling contended data structures (Vol. 12-16-March-2016).
Presented at the PPoPP: Principles and Practice of Parallel Pogramming, ACM. https://doi.org/10.1145/2851141.2851155'
chicago: 'Haider, Syed, William Hasenplaugh, and Dan-Adrian Alistarh. “Lease/Release:
Architectural Support for Scaling Contended Data Structures,” Vol. 12-16-March-2016.
ACM, 2016. https://doi.org/10.1145/2851141.2851155.'
ieee: 'S. Haider, W. Hasenplaugh, and D.-A. Alistarh, “Lease/Release: Architectural
support for scaling contended data structures,” presented at the PPoPP: Principles
and Practice of Parallel Pogramming, 2016, vol. 12-16-March-2016.'
ista: 'Haider S, Hasenplaugh W, Alistarh D-A. 2016. Lease/Release: Architectural
support for scaling contended data structures. PPoPP: Principles and Practice
of Parallel Pogramming vol. 12-16-March-2016.'
mla: 'Haider, Syed, et al. Lease/Release: Architectural Support for Scaling Contended
Data Structures. Vol. 12-16-March-2016, ACM, 2016, doi:10.1145/2851141.2851155.'
short: S. Haider, W. Hasenplaugh, D.-A. Alistarh, in:, ACM, 2016.
conference:
name: 'PPoPP: Principles and Practice of Parallel Pogramming'
date_created: 2018-12-11T11:48:29Z
date_published: 2016-02-27T00:00:00Z
date_updated: 2022-03-18T12:56:29Z
day: '27'
doi: 10.1145/2851141.2851155
extern: '1'
language:
- iso: eng
month: '02'
oa_version: None
publication_status: published
publisher: ACM
publist_id: '6871'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Lease/Release: Architectural support for scaling contended data structures'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12-16-March-2016
year: '2016'
...
---
_id: '786'
abstract:
- lang: eng
text: Lock-free concurrent algorithms guarantee that some concurrent operation will
always make progress in a finite number of steps. Yet programmers prefer to treat
concurrent code as if it were wait-free, guaranteeing that all operations always
make progress. Unfortunately, designing wait-free algorithms is generally a very
complex task, and the resulting algorithms are not always efficient. Although
obtaining efficient wait-free algorithms has been a long-time goal for the theory
community, most nonblocking commercial code is only lock-free. This article suggests
a simple solution to this problem.We show that for a large class of lock-free
algorithms, under scheduling conditions that approximate those found in commercial
hardware architectures, lock-free algorithms behave as if they are wait-free.
In other words, programmers can continue to design simple lock-free algorithms
instead of complex wait-free ones, and in practice, they will get wait-free progress.
Our main contribution is a new way of analyzing a general class of lock-free algorithms
under a stochastic scheduler. Our analysis relates the individual performance
of processes to the global performance of the system using Markov chain lifting
between a complex per-process chain and a simpler system progress chain. We show
that lock-free algorithms are not only wait-free with probability 1 but that in
fact a general subset of lock-free algorithms can be closely bounded in terms
of the average number of steps required until an operation completes. To the best
of our knowledge, this is the first attempt to analyze progress conditions, typically
stated in relation to a worst-case adversary, in a stochastic model capturing
their expected asymptotic behavior.
acknowledgement: Part of this work was performed while the first author was a postdoctoral
associate at MIT CSAIL, where he was supported by the SNF Postdoctoral Fellows Program,
NSF grant CCF-1217921, DoE ASCR grant ER26116/DE-SC0008923, and by grants from the
Oracle and Intel corporations. The second author was supported in part by ISF grant
1696/14. The third author was supported in part by NSF grants CCF-1217921, CCF-1301926,
IIS-1447786, and CCF-1561807, and the U.S. Department of Energy under grant DE-SC0008923,
and by equipment grants from Intel Corporation.
article_processing_charge: No
arxiv: 1
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Keren
full_name: Censor Hillel, Keren
last_name: Censor Hillel
- first_name: Nir
full_name: Shavit, Nir
last_name: Shavit
citation:
ama: Alistarh D-A, Censor Hillel K, Shavit N. Are lock free concurrent algorithms
practically wait free . Journal of the ACM. 2016;63(4). doi:10.1145/2903136
apa: Alistarh, D.-A., Censor Hillel, K., & Shavit, N. (2016). Are lock free
concurrent algorithms practically wait free . Journal of the ACM. ACM.
https://doi.org/10.1145/2903136
chicago: Alistarh, Dan-Adrian, Keren Censor Hillel, and Nir Shavit. “Are Lock Free
Concurrent Algorithms Practically Wait Free .” Journal of the ACM. ACM,
2016. https://doi.org/10.1145/2903136.
ieee: D.-A. Alistarh, K. Censor Hillel, and N. Shavit, “Are lock free concurrent
algorithms practically wait free ,” Journal of the ACM, vol. 63, no. 4.
ACM, 2016.
ista: Alistarh D-A, Censor Hillel K, Shavit N. 2016. Are lock free concurrent algorithms
practically wait free . Journal of the ACM. 63(4).
mla: Alistarh, Dan-Adrian, et al. “Are Lock Free Concurrent Algorithms Practically
Wait Free .” Journal of the ACM, vol. 63, no. 4, ACM, 2016, doi:10.1145/2903136.
short: D.-A. Alistarh, K. Censor Hillel, N. Shavit, Journal of the ACM 63 (2016).
date_created: 2018-12-11T11:48:29Z
date_published: 2016-09-01T00:00:00Z
date_updated: 2023-02-23T13:19:04Z
day: '01'
doi: 10.1145/2903136
extern: '1'
external_id:
arxiv:
- '1311.3200'
intvolume: ' 63'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1311.3200
month: '09'
oa: 1
oa_version: Preprint
publication: Journal of the ACM
publication_status: published
publisher: ACM
publist_id: '6870'
quality_controlled: '1'
status: public
title: 'Are lock free concurrent algorithms practically wait free '
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 63
year: '2016'
...
---
_id: '8020'
abstract:
- lang: eng
text: Balance of cortical excitation and inhibition (EI) is thought to be disrupted
in several neuropsychiatric conditions, yet it is not clear how it is maintained
in the healthy human brain. When EI balance is disturbed during learning and memory
in animal models, it can be restabilized via formation of inhibitory replicas
of newly formed excitatory connections. Here we assess evidence for such selective
inhibitory rebalancing in humans. Using fMRI repetition suppression we measure
newly formed cortical associations in the human brain. We show that expression
of these associations reduces over time despite persistence in behavior, consistent
with inhibitory rebalancing. To test this, we modulated excitation/inhibition
balance with transcranial direct current stimulation (tDCS). Using ultra-high-field
(7T) MRI and spectroscopy, we show that reducing GABA allows cortical associations
to be re-expressed. This suggests that in humans associative memories are stored
in balanced excitatory-inhibitory ensembles that lie dormant unless latent inhibitory
connections are unmasked.
article_processing_charge: No
article_type: original
author:
- first_name: H.C.
full_name: Barron, H.C.
last_name: Barron
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
- first_name: U.E.
full_name: Emir, U.E.
last_name: Emir
- first_name: T.R.
full_name: Makin, T.R.
last_name: Makin
- first_name: J.
full_name: O’Shea, J.
last_name: O’Shea
- first_name: S.
full_name: Clare, S.
last_name: Clare
- first_name: S.
full_name: Jbabdi, S.
last_name: Jbabdi
- first_name: R.J.
full_name: Dolan, R.J.
last_name: Dolan
- first_name: T.E.J.
full_name: Behrens, T.E.J.
last_name: Behrens
citation:
ama: Barron HC, Vogels TP, Emir UE, et al. Unmasking latent inhibitory connections
in human cortex to reveal dormant cortical memories. Neuron. 2016;90(1):191-203.
doi:10.1016/j.neuron.2016.02.031
apa: Barron, H. C., Vogels, T. P., Emir, U. E., Makin, T. R., O’Shea, J., Clare,
S., … Behrens, T. E. J. (2016). Unmasking latent inhibitory connections in human
cortex to reveal dormant cortical memories. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2016.02.031
chicago: Barron, H.C., Tim P Vogels, U.E. Emir, T.R. Makin, J. O’Shea, S. Clare,
S. Jbabdi, R.J. Dolan, and T.E.J. Behrens. “Unmasking Latent Inhibitory Connections
in Human Cortex to Reveal Dormant Cortical Memories.” Neuron. Elsevier,
2016. https://doi.org/10.1016/j.neuron.2016.02.031.
ieee: H. C. Barron et al., “Unmasking latent inhibitory connections in human
cortex to reveal dormant cortical memories,” Neuron, vol. 90, no. 1. Elsevier,
pp. 191–203, 2016.
ista: Barron HC, Vogels TP, Emir UE, Makin TR, O’Shea J, Clare S, Jbabdi S, Dolan
RJ, Behrens TEJ. 2016. Unmasking latent inhibitory connections in human cortex
to reveal dormant cortical memories. Neuron. 90(1), 191–203.
mla: Barron, H. C., et al. “Unmasking Latent Inhibitory Connections in Human Cortex
to Reveal Dormant Cortical Memories.” Neuron, vol. 90, no. 1, Elsevier,
2016, pp. 191–203, doi:10.1016/j.neuron.2016.02.031.
short: H.C. Barron, T.P. Vogels, U.E. Emir, T.R. Makin, J. O’Shea, S. Clare, S.
Jbabdi, R.J. Dolan, T.E.J. Behrens, Neuron 90 (2016) 191–203.
date_created: 2020-06-25T13:05:33Z
date_published: 2016-04-06T00:00:00Z
date_updated: 2021-01-12T08:16:34Z
day: '06'
ddc:
- '570'
doi: 10.1016/j.neuron.2016.02.031
extern: '1'
external_id:
pmid:
- '26996082'
file:
- access_level: open_access
checksum: 9ce7a1c64986dce0435c070285a7ef9b
content_type: application/pdf
creator: cziletti
date_created: 2020-07-09T09:57:04Z
date_updated: 2020-07-14T12:48:08Z
file_id: '8104'
file_name: 2016_Neuron_Barron.pdf
file_size: 5334136
relation: main_file
file_date_updated: 2020-07-14T12:48:08Z
has_accepted_license: '1'
intvolume: ' 90'
issue: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 191-203
pmid: 1
publication: Neuron
publication_identifier:
issn:
- 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Unmasking latent inhibitory connections in human cortex to reveal dormant cortical
memories
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 90
year: '2016'
...