---
_id: '697'
abstract:
- lang: eng
text: 'De, Trevisan and Tulsiani [CRYPTO 2010] show that every distribution over
n-bit strings which has constant statistical distance to uniform (e.g., the output
of a pseudorandom generator mapping n-1 to n bit strings), can be distinguished
from the uniform distribution with advantage epsilon by a circuit of size O( 2^n
epsilon^2). We generalize this result, showing that a distribution which has less
than k bits of min-entropy, can be distinguished from any distribution with k
bits of delta-smooth min-entropy with advantage epsilon by a circuit of size O(2^k
epsilon^2/delta^2). As a special case, this implies that any distribution with
support at most 2^k (e.g., the output of a pseudoentropy generator mapping k to
n bit strings) can be distinguished from any given distribution with min-entropy
k+1 with advantage epsilon by a circuit of size O(2^k epsilon^2). Our result thus
shows that pseudoentropy distributions face basically the same non-uniform attacks
as pseudorandom distributions. '
alternative_title:
- LIPIcs
article_number: '39'
author:
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Maciej
full_name: Skórski, Maciej
id: EC09FA6A-02D0-11E9-8223-86B7C91467DD
last_name: Skórski
citation:
ama: 'Pietrzak KZ, Skórski M. Non uniform attacks against pseudoentropy. In: Vol
80. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2017. doi:10.4230/LIPIcs.ICALP.2017.39'
apa: 'Pietrzak, K. Z., & Skórski, M. (2017). Non uniform attacks against pseudoentropy
(Vol. 80). Presented at the ICALP: International Colloquium on Automata, Languages,
and Programming, Warsaw, Poland: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPIcs.ICALP.2017.39'
chicago: Pietrzak, Krzysztof Z, and Maciej Skórski. “Non Uniform Attacks against
Pseudoentropy,” Vol. 80. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
https://doi.org/10.4230/LIPIcs.ICALP.2017.39.
ieee: 'K. Z. Pietrzak and M. Skórski, “Non uniform attacks against pseudoentropy,”
presented at the ICALP: International Colloquium on Automata, Languages, and Programming,
Warsaw, Poland, 2017, vol. 80.'
ista: 'Pietrzak KZ, Skórski M. 2017. Non uniform attacks against pseudoentropy.
ICALP: International Colloquium on Automata, Languages, and Programming, LIPIcs,
vol. 80, 39.'
mla: Pietrzak, Krzysztof Z., and Maciej Skórski. Non Uniform Attacks against
Pseudoentropy. Vol. 80, 39, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2017, doi:10.4230/LIPIcs.ICALP.2017.39.
short: K.Z. Pietrzak, M. Skórski, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2017.
conference:
end_date: 2017-07-14
location: Warsaw, Poland
name: 'ICALP: International Colloquium on Automata, Languages, and Programming'
start_date: 2017-07-10
date_created: 2018-12-11T11:47:59Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2021-01-12T08:11:15Z
day: '01'
ddc:
- '005'
department:
- _id: KrPi
doi: 10.4230/LIPIcs.ICALP.2017.39
ec_funded: 1
file:
- access_level: open_access
checksum: e95618a001692f1af2d68f5fde43bc1f
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:40Z
date_updated: 2020-07-14T12:47:46Z
file_id: '4701'
file_name: IST-2017-893-v1+1_LIPIcs-ICALP-2017-39.pdf
file_size: 601004
relation: main_file
file_date_updated: 2020-07-14T12:47:46Z
has_accepted_license: '1'
intvolume: ' 80'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication_identifier:
issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7003'
pubrep_id: '893'
quality_controlled: '1'
scopus_import: 1
status: public
title: Non uniform attacks against pseudoentropy
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 80
year: '2017'
...
---
_id: '698'
abstract:
- lang: eng
text: 'Extracellular matrix signals from the microenvironment regulate gene expression
patterns and cell behavior. Using a combination of experiments and geometric models,
we demonstrate correlations between cell geometry, three-dimensional (3D) organization
of chromosome territories, and gene expression. Fluorescence in situ hybridization
experiments showed that micropatterned fibroblasts cultured on anisotropic versus
isotropic substrates resulted in repositioning of specific chromosomes, which
contained genes that were differentially regulated by cell geometries. Experiments
combined with ellipsoid packing models revealed that the mechanosensitivity of
chromosomes was correlated with their orientation in the nucleus. Transcription
inhibition experiments suggested that the intermingling degree was more sensitive
to global changes in transcription than to chromosome radial positioning and its
orientations. These results suggested that cell geometry modulated 3D chromosome
arrangement, and their neighborhoods correlated with gene expression patterns
in a predictable manner. This is central to understanding geometric control of
genetic programs involved in cellular homeostasis and the associated diseases. '
author:
- first_name: Yejun
full_name: Wang, Yejun
last_name: Wang
- first_name: Mallika
full_name: Nagarajan, Mallika
last_name: Nagarajan
- first_name: Caroline
full_name: Uhler, Caroline
id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
last_name: Uhler
orcid: 0000-0002-7008-0216
- first_name: Gv
full_name: Shivashankar, Gv
last_name: Shivashankar
citation:
ama: Wang Y, Nagarajan M, Uhler C, Shivashankar G. Orientation and repositioning
of chromosomes correlate with cell geometry dependent gene expression. Molecular
Biology of the Cell. 2017;28(14):1997-2009. doi:10.1091/mbc.E16-12-0825
apa: Wang, Y., Nagarajan, M., Uhler, C., & Shivashankar, G. (2017). Orientation
and repositioning of chromosomes correlate with cell geometry dependent gene expression.
Molecular Biology of the Cell. American Society for Cell Biology. https://doi.org/10.1091/mbc.E16-12-0825
chicago: Wang, Yejun, Mallika Nagarajan, Caroline Uhler, and Gv Shivashankar. “Orientation
and Repositioning of Chromosomes Correlate with Cell Geometry Dependent Gene Expression.”
Molecular Biology of the Cell. American Society for Cell Biology, 2017.
https://doi.org/10.1091/mbc.E16-12-0825.
ieee: Y. Wang, M. Nagarajan, C. Uhler, and G. Shivashankar, “Orientation and repositioning
of chromosomes correlate with cell geometry dependent gene expression,” Molecular
Biology of the Cell, vol. 28, no. 14. American Society for Cell Biology, pp.
1997–2009, 2017.
ista: Wang Y, Nagarajan M, Uhler C, Shivashankar G. 2017. Orientation and repositioning
of chromosomes correlate with cell geometry dependent gene expression. Molecular
Biology of the Cell. 28(14), 1997–2009.
mla: Wang, Yejun, et al. “Orientation and Repositioning of Chromosomes Correlate
with Cell Geometry Dependent Gene Expression.” Molecular Biology of the Cell,
vol. 28, no. 14, American Society for Cell Biology, 2017, pp. 1997–2009, doi:10.1091/mbc.E16-12-0825.
short: Y. Wang, M. Nagarajan, C. Uhler, G. Shivashankar, Molecular Biology of the
Cell 28 (2017) 1997–2009.
date_created: 2018-12-11T11:47:59Z
date_published: 2017-07-07T00:00:00Z
date_updated: 2021-01-12T08:11:17Z
day: '07'
ddc:
- '519'
department:
- _id: CaUh
doi: 10.1091/mbc.E16-12-0825
file:
- access_level: open_access
checksum: de01dac9e30970cfa6ae902480a4e04d
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:53Z
date_updated: 2020-07-14T12:47:46Z
file_id: '4844'
file_name: IST-2017-892-v1+1_Mol._Biol._Cell-2017-Wang-1997-2009.pdf
file_size: 1086097
relation: main_file
file_date_updated: 2020-07-14T12:47:46Z
has_accepted_license: '1'
intvolume: ' 28'
issue: '14'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 1997 - 2009
project:
- _id: 2530CA10-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Y 903-N35
name: 'Gaussian Graphical Models: Theory and Applications'
publication: Molecular Biology of the Cell
publication_identifier:
issn:
- '10591524'
publication_status: published
publisher: American Society for Cell Biology
publist_id: '7001'
pubrep_id: '892'
quality_controlled: '1'
scopus_import: 1
status: public
title: Orientation and repositioning of chromosomes correlate with cell geometry dependent
gene expression
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2017'
...
---
_id: '699'
abstract:
- lang: eng
text: 'In antagonistic symbioses, such as host–parasite interactions, one population’s
success is the other’s loss. In mutualistic symbioses, such as division of labor,
both parties can gain, but they might have different preferences over the possible
mutualistic arrangements. The rates of evolution of the two populations in a symbiosis
are important determinants of which population will be more successful: Faster
evolution is thought to be favored in antagonistic symbioses (the “Red Queen effect”),
but disfavored in certain mutualistic symbioses (the “Red King effect”). However,
it remains unclear which biological parameters drive these effects. Here, we analyze
the effects of the various determinants of evolutionary rate: generation time,
mutation rate, population size, and the intensity of natural selection. Our main
results hold for the case where mutation is infrequent. Slower evolution causes
a long-term advantage in an important class of mutualistic interactions. Surprisingly,
less intense selection is the strongest driver of this Red King effect, whereas
relative mutation rates and generation times have little effect. In antagonistic
interactions, faster evolution by any means is beneficial. Our results provide
insight into the demographic evolution of symbionts. '
author:
- first_name: Carl
full_name: Veller, Carl
last_name: Veller
- first_name: Laura
full_name: Hayward, Laura
last_name: Hayward
- first_name: Martin
full_name: Nowak, Martin
last_name: Nowak
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
citation:
ama: Veller C, Hayward L, Nowak M, Hilbe C. The red queen and king in finite populations.
PNAS. 2017;114(27):E5396-E5405. doi:10.1073/pnas.1702020114
apa: Veller, C., Hayward, L., Nowak, M., & Hilbe, C. (2017). The red queen and
king in finite populations. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1702020114
chicago: Veller, Carl, Laura Hayward, Martin Nowak, and Christian Hilbe. “The Red
Queen and King in Finite Populations.” PNAS. National Academy of Sciences,
2017. https://doi.org/10.1073/pnas.1702020114.
ieee: C. Veller, L. Hayward, M. Nowak, and C. Hilbe, “The red queen and king in
finite populations,” PNAS, vol. 114, no. 27. National Academy of Sciences,
pp. E5396–E5405, 2017.
ista: Veller C, Hayward L, Nowak M, Hilbe C. 2017. The red queen and king in finite
populations. PNAS. 114(27), E5396–E5405.
mla: Veller, Carl, et al. “The Red Queen and King in Finite Populations.” PNAS,
vol. 114, no. 27, National Academy of Sciences, 2017, pp. E5396–405, doi:10.1073/pnas.1702020114.
short: C. Veller, L. Hayward, M. Nowak, C. Hilbe, PNAS 114 (2017) E5396–E5405.
date_created: 2018-12-11T11:48:00Z
date_published: 2017-07-03T00:00:00Z
date_updated: 2021-01-12T08:11:21Z
day: '03'
department:
- _id: KrCh
doi: 10.1073/pnas.1702020114
external_id:
pmid:
- '28630336'
intvolume: ' 114'
issue: '27'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502615/
month: '07'
oa: 1
oa_version: Submitted Version
page: E5396 - E5405
pmid: 1
publication: PNAS
publication_identifier:
issn:
- '00278424'
publication_status: published
publisher: National Academy of Sciences
publist_id: '7002'
quality_controlled: '1'
scopus_import: 1
status: public
title: The red queen and king in finite populations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 114
year: '2017'
...
---
_id: '700'
abstract:
- lang: eng
text: Microtubules provide the mechanical force required for chromosome separation
during mitosis. However, little is known about the dynamic (high-frequency) mechanical
properties of microtubules. Here, we theoretically propose to control the vibrations
of a doubly clamped microtubule by tip electrodes and to detect its motion via
the optomechanical coupling between the vibrational modes of the microtubule and
an optical cavity. In the presence of a red-detuned strong pump laser, this coupling
leads to optomechanical-induced transparency of an optical probe field, which
can be detected with state-of-the art technology. The center frequency and line
width of the transparency peak give the resonance frequency and damping rate of
the microtubule, respectively, while the height of the peak reveals information
about the microtubule-cavity field coupling. Our method opens the new possibilities
to gain information about the physical properties of microtubules, which will
enhance our capability to design physical cancer treatment protocols as alternatives
to chemotherapeutic drugs.
article_number: '012404'
author:
- first_name: Shabir
full_name: Barzanjeh, Shabir
id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
last_name: Barzanjeh
orcid: 0000-0003-0415-1423
- first_name: Vahid
full_name: Salari, Vahid
last_name: Salari
- first_name: Jack
full_name: Tuszynski, Jack
last_name: Tuszynski
- first_name: Michal
full_name: Cifra, Michal
last_name: Cifra
- first_name: Christoph
full_name: Simon, Christoph
last_name: Simon
citation:
ama: Barzanjeh S, Salari V, Tuszynski J, Cifra M, Simon C. Optomechanical proposal
for monitoring microtubule mechanical vibrations. Physical Review E Statistical
Nonlinear and Soft Matter Physics . 2017;96(1). doi:10.1103/PhysRevE.96.012404
apa: Barzanjeh, S., Salari, V., Tuszynski, J., Cifra, M., & Simon, C. (2017).
Optomechanical proposal for monitoring microtubule mechanical vibrations.
Physical Review E Statistical Nonlinear and Soft Matter Physics . American
Institute of Physics. https://doi.org/10.1103/PhysRevE.96.012404
chicago: Barzanjeh, Shabir, Vahid Salari, Jack Tuszynski, Michal Cifra, and Christoph
Simon. “Optomechanical Proposal for Monitoring Microtubule Mechanical Vibrations.”
Physical Review E Statistical Nonlinear and Soft Matter Physics . American
Institute of Physics, 2017. https://doi.org/10.1103/PhysRevE.96.012404.
ieee: S. Barzanjeh, V. Salari, J. Tuszynski, M. Cifra, and C. Simon, “Optomechanical
proposal for monitoring microtubule mechanical vibrations,” Physical Review
E Statistical Nonlinear and Soft Matter Physics , vol. 96, no. 1. American
Institute of Physics, 2017.
ista: Barzanjeh S, Salari V, Tuszynski J, Cifra M, Simon C. 2017. Optomechanical
proposal for monitoring microtubule mechanical vibrations. Physical Review E
Statistical Nonlinear and Soft Matter Physics . 96(1), 012404.
mla: Barzanjeh, Shabir, et al. “Optomechanical Proposal for Monitoring Microtubule
Mechanical Vibrations.” Physical Review E Statistical Nonlinear and Soft Matter
Physics , vol. 96, no. 1, 012404, American Institute of Physics, 2017, doi:10.1103/PhysRevE.96.012404.
short: S. Barzanjeh, V. Salari, J. Tuszynski, M. Cifra, C. Simon, Physical Review
E Statistical Nonlinear and Soft Matter Physics 96 (2017).
date_created: 2018-12-11T11:48:00Z
date_published: 2017-07-12T00:00:00Z
date_updated: 2023-02-23T12:56:35Z
day: '12'
department:
- _id: JoFi
doi: 10.1103/PhysRevE.96.012404
ec_funded: 1
intvolume: ' 96'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/pdf/1612.07061.pdf
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 258047B6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '707438'
name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
with cavity Optomechanics'
publication: ' Physical Review E Statistical Nonlinear and Soft Matter Physics '
publication_identifier:
issn:
- '24700045'
publication_status: published
publisher: American Institute of Physics
publist_id: '6997'
quality_controlled: '1'
scopus_import: 1
status: public
title: Optomechanical proposal for monitoring microtubule mechanical vibrations
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 96
year: '2017'
...
---
_id: '701'
abstract:
- lang: eng
text: A d-dimensional simplex S is called a k-reptile (or a k-reptile simplex) if
it can be tiled by k simplices with disjoint interiors that are all mutually congruent
and similar to S. For d = 2, triangular k-reptiles exist for all k of the form
a^2, 3a^2 or a^2+b^2 and they have been completely characterized by Snover, Waiveris,
and Williams. On the other hand, the only k-reptile simplices that are known for
d ≥ 3, have k = m^d, where m is a positive integer. We substantially simplify
the proof by Matoušek and the second author that for d = 3, k-reptile tetrahedra
can exist only for k = m^3. We then prove a weaker analogue of this result for
d = 4 by showing that four-dimensional k-reptile simplices can exist only for
k = m^2.
author:
- first_name: Jan
full_name: Kynčl, Jan
last_name: Kynčl
- first_name: Zuzana
full_name: Patakova, Zuzana
id: 48B57058-F248-11E8-B48F-1D18A9856A87
last_name: Patakova
orcid: 0000-0002-3975-1683
citation:
ama: Kynčl J, Patakova Z. On the nonexistence of k reptile simplices in ℝ^3 and
ℝ^4. The Electronic Journal of Combinatorics. 2017;24(3):1-44.
apa: Kynčl, J., & Patakova, Z. (2017). On the nonexistence of k reptile simplices
in ℝ^3 and ℝ^4. The Electronic Journal of Combinatorics. International
Press.
chicago: Kynčl, Jan, and Zuzana Patakova. “On the Nonexistence of k Reptile Simplices
in ℝ^3 and ℝ^4.” The Electronic Journal of Combinatorics. International
Press, 2017.
ieee: J. Kynčl and Z. Patakova, “On the nonexistence of k reptile simplices in ℝ^3
and ℝ^4,” The Electronic Journal of Combinatorics, vol. 24, no. 3. International
Press, pp. 1–44, 2017.
ista: Kynčl J, Patakova Z. 2017. On the nonexistence of k reptile simplices in ℝ^3
and ℝ^4. The Electronic Journal of Combinatorics. 24(3), 1–44.
mla: Kynčl, Jan, and Zuzana Patakova. “On the Nonexistence of k Reptile Simplices
in ℝ^3 and ℝ^4.” The Electronic Journal of Combinatorics, vol. 24, no.
3, International Press, 2017, pp. 1–44.
short: J. Kynčl, Z. Patakova, The Electronic Journal of Combinatorics 24 (2017)
1–44.
date_created: 2018-12-11T11:48:00Z
date_published: 2017-07-14T00:00:00Z
date_updated: 2021-01-12T08:11:28Z
day: '14'
ddc:
- '500'
department:
- _id: UlWa
file:
- access_level: open_access
checksum: a431e573e31df13bc0f66de3061006ec
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:14:25Z
date_updated: 2020-07-14T12:47:47Z
file_id: '5077'
file_name: IST-2018-984-v1+1_Patakova_on_the_nonexistence_of_k-reptile_simplices_in_R_3_and_R_4_2017.pdf
file_size: 544042
relation: main_file
file_date_updated: 2020-07-14T12:47:47Z
has_accepted_license: '1'
intvolume: ' 24'
issue: '3'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 1-44
publication: The Electronic Journal of Combinatorics
publication_identifier:
issn:
- '10778926'
publication_status: published
publisher: International Press
publist_id: '6996'
pubrep_id: '984'
quality_controlled: '1'
status: public
title: On the nonexistence of k reptile simplices in ℝ^3 and ℝ^4
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2017'
...
---
_id: '702'
abstract:
- lang: eng
text: "Leading autism-associated mutation in mouse partially mimics human disorder.\r\n\r\n"
author:
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
citation:
ama: Novarino G. The riddle of CHD8 haploinsufficiency in autism spectrum disorder.
Science Translational Medicine. 2017;9(399):eaao0972. doi:10.1126/scitranslmed.aao0972
apa: Novarino, G. (2017). The riddle of CHD8 haploinsufficiency in autism spectrum
disorder. Science Translational Medicine. American Association for the
Advancement of Science. https://doi.org/10.1126/scitranslmed.aao0972
chicago: Novarino, Gaia. “The Riddle of CHD8 Haploinsufficiency in Autism Spectrum
Disorder.” Science Translational Medicine. American Association for the
Advancement of Science, 2017. https://doi.org/10.1126/scitranslmed.aao0972.
ieee: G. Novarino, “The riddle of CHD8 haploinsufficiency in autism spectrum disorder,”
Science Translational Medicine, vol. 9, no. 399. American Association for
the Advancement of Science, p. eaao0972, 2017.
ista: Novarino G. 2017. The riddle of CHD8 haploinsufficiency in autism spectrum
disorder. Science Translational Medicine. 9(399), eaao0972.
mla: Novarino, Gaia. “The Riddle of CHD8 Haploinsufficiency in Autism Spectrum Disorder.”
Science Translational Medicine, vol. 9, no. 399, American Association for
the Advancement of Science, 2017, p. eaao0972, doi:10.1126/scitranslmed.aao0972.
short: G. Novarino, Science Translational Medicine 9 (2017) eaao0972.
date_created: 2018-12-11T11:48:01Z
date_published: 2017-07-19T00:00:00Z
date_updated: 2021-01-12T08:11:31Z
day: '19'
department:
- _id: GaNo
doi: 10.1126/scitranslmed.aao0972
intvolume: ' 9'
issue: '399'
language:
- iso: eng
month: '07'
oa_version: None
page: eaao0972
publication: Science Translational Medicine
publication_identifier:
issn:
- '19466234'
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '6993'
quality_controlled: '1'
scopus_import: 1
status: public
title: The riddle of CHD8 haploinsufficiency in autism spectrum disorder
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2017'
...
---
_id: '704'
abstract:
- lang: eng
text: 'How the organization of genes on a chromosome shapes adaptation is essential
for understanding evolutionary paths. Here, we investigate how adaptation to rapidly
increasing levels of antibiotic depends on the chromosomal neighborhood of a drug-resistance
gene inserted at different positions of the Escherichia coli chromosome. Using
a dual-fluorescence reporter that allows us to distinguish gene amplifications
from other up-mutations, we track in real-time adaptive changes in expression
of the drug-resistance gene. We find that the relative contribution of several
mutation types differs systematically between loci due to properties of neighboring
genes: essentiality, expression, orientation, termination, and presence of duplicates.
These properties determine rate and fitness effects of gene amplification, deletions,
and mutations compromising transcriptional termination. Thus, the adaptive potential
of a gene under selection is a system-property with a complex genetic basis that
is specific for each chromosomal locus, and it can be inferred from detailed functional
and genomic data.'
article_number: e25100
author:
- first_name: Magdalena
full_name: Steinrück, Magdalena
id: 2C023F40-F248-11E8-B48F-1D18A9856A87
last_name: Steinrück
orcid: 0000-0003-1229-9719
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
citation:
ama: Steinrück M, Guet CC. Complex chromosomal neighborhood effects determine the
adaptive potential of a gene under selection. eLife. 2017;6. doi:10.7554/eLife.25100
apa: Steinrück, M., & Guet, C. C. (2017). Complex chromosomal neighborhood effects
determine the adaptive potential of a gene under selection. ELife. eLife
Sciences Publications. https://doi.org/10.7554/eLife.25100
chicago: Steinrück, Magdalena, and Calin C Guet. “Complex Chromosomal Neighborhood
Effects Determine the Adaptive Potential of a Gene under Selection.” ELife.
eLife Sciences Publications, 2017. https://doi.org/10.7554/eLife.25100.
ieee: M. Steinrück and C. C. Guet, “Complex chromosomal neighborhood effects determine
the adaptive potential of a gene under selection,” eLife, vol. 6. eLife
Sciences Publications, 2017.
ista: Steinrück M, Guet CC. 2017. Complex chromosomal neighborhood effects determine
the adaptive potential of a gene under selection. eLife. 6, e25100.
mla: Steinrück, Magdalena, and Calin C. Guet. “Complex Chromosomal Neighborhood
Effects Determine the Adaptive Potential of a Gene under Selection.” ELife,
vol. 6, e25100, eLife Sciences Publications, 2017, doi:10.7554/eLife.25100.
short: M. Steinrück, C.C. Guet, ELife 6 (2017).
date_created: 2018-12-11T11:48:01Z
date_published: 2017-07-25T00:00:00Z
date_updated: 2024-03-25T23:30:14Z
day: '25'
ddc:
- '576'
department:
- _id: CaGu
doi: 10.7554/eLife.25100
file:
- access_level: open_access
checksum: 6b908b5db9f61f6820ebd7f8fa815571
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:54Z
date_updated: 2020-07-14T12:47:48Z
file_id: '4975'
file_name: IST-2017-890-v1+1_elife-25100-v1.pdf
file_size: 2092088
relation: main_file
- access_level: open_access
checksum: ca21530389b720243552678125fdba35
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:12:55Z
date_updated: 2020-07-14T12:47:48Z
file_id: '4976'
file_name: IST-2017-890-v1+2_elife-25100-figures-v1.pdf
file_size: 3428681
relation: main_file
file_date_updated: 2020-07-14T12:47:48Z
has_accepted_license: '1'
intvolume: ' 6'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: eLife
publication_identifier:
issn:
- 2050084X
publication_status: published
publisher: eLife Sciences Publications
publist_id: '6990'
pubrep_id: '890'
quality_controlled: '1'
related_material:
record:
- id: '5564'
relation: popular_science
status: public
- id: '26'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: Complex chromosomal neighborhood effects determine the adaptive potential of
a gene under selection
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2017'
...
---
_id: '706'
abstract:
- lang: eng
text: A hippocampal mossy fiber synapse has a complex structure and is implicated
in learning and memory. In this synapse, the mossy fiber boutons attach to the
dendritic shaft by puncta adherentia junctions and wrap around a multiply-branched
spine, forming synaptic junctions. We have recently shown using transmission electron
microscopy, immunoelectron microscopy and serial block face-scanning electron
microscopy that atypical puncta adherentia junctions are formed in the afadin-deficient
mossy fiber synapse and that the complexity of postsynaptic spines and mossy fiber
boutons, the number of spine heads, the area of postsynaptic densities and the
density of synaptic vesicles docked to active zones are decreased in the afadin-deficient
synapse. We investigated here the roles of afadin in the functional differentiations
of the mossy fiber synapse using the afadin-deficient mice. The electrophysiological
studies showed that both the release probability of glutamate and the postsynaptic
responsiveness to glutamate were markedly reduced, but not completely lost, in
the afadin-deficient mossy fiber synapse, whereas neither long-term potentiation
nor long-term depression was affected. These results indicate that afadin plays
roles in the functional differentiations of the presynapse and the postsynapse
of the hippocampal mossy fiber synapse.
author:
- first_name: Xiaoqi
full_name: Geng, Xiaoqi
id: 3395256A-F248-11E8-B48F-1D18A9856A87
last_name: Geng
- first_name: Tomohiko
full_name: Maruo, Tomohiko
last_name: Maruo
- first_name: Kenji
full_name: Mandai, Kenji
last_name: Mandai
- first_name: Irwan
full_name: Supriyanto, Irwan
last_name: Supriyanto
- first_name: Muneaki
full_name: Miyata, Muneaki
last_name: Miyata
- first_name: Shotaro
full_name: Sakakibara, Shotaro
last_name: Sakakibara
- first_name: Akira
full_name: Mizoguchi, Akira
last_name: Mizoguchi
- first_name: Yoshimi
full_name: Takai, Yoshimi
last_name: Takai
- first_name: Masahiro
full_name: Mori, Masahiro
last_name: Mori
citation:
ama: Geng X, Maruo T, Mandai K, et al. Roles of afadin in functional differentiations
of hippocampal mossy fiber synapse. Genes to Cells. 2017;22(8):715-722.
doi:10.1111/gtc.12508
apa: Geng, X., Maruo, T., Mandai, K., Supriyanto, I., Miyata, M., Sakakibara, S.,
… Mori, M. (2017). Roles of afadin in functional differentiations of hippocampal
mossy fiber synapse. Genes to Cells. Wiley-Blackwell. https://doi.org/10.1111/gtc.12508
chicago: Geng, Xiaoqi, Tomohiko Maruo, Kenji Mandai, Irwan Supriyanto, Muneaki Miyata,
Shotaro Sakakibara, Akira Mizoguchi, Yoshimi Takai, and Masahiro Mori. “Roles
of Afadin in Functional Differentiations of Hippocampal Mossy Fiber Synapse.”
Genes to Cells. Wiley-Blackwell, 2017. https://doi.org/10.1111/gtc.12508.
ieee: X. Geng et al., “Roles of afadin in functional differentiations of
hippocampal mossy fiber synapse,” Genes to Cells, vol. 22, no. 8. Wiley-Blackwell,
pp. 715–722, 2017.
ista: Geng X, Maruo T, Mandai K, Supriyanto I, Miyata M, Sakakibara S, Mizoguchi
A, Takai Y, Mori M. 2017. Roles of afadin in functional differentiations of hippocampal
mossy fiber synapse. Genes to Cells. 22(8), 715–722.
mla: Geng, Xiaoqi, et al. “Roles of Afadin in Functional Differentiations of Hippocampal
Mossy Fiber Synapse.” Genes to Cells, vol. 22, no. 8, Wiley-Blackwell,
2017, pp. 715–22, doi:10.1111/gtc.12508.
short: X. Geng, T. Maruo, K. Mandai, I. Supriyanto, M. Miyata, S. Sakakibara, A.
Mizoguchi, Y. Takai, M. Mori, Genes to Cells 22 (2017) 715–722.
date_created: 2018-12-11T11:48:02Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:11:37Z
day: '01'
department:
- _id: PeJo
doi: 10.1111/gtc.12508
intvolume: ' 22'
issue: '8'
language:
- iso: eng
month: '08'
oa_version: None
page: 715 - 722
publication: Genes to Cells
publication_identifier:
issn:
- '13569597'
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6987'
quality_controlled: '1'
scopus_import: 1
status: public
title: Roles of afadin in functional differentiations of hippocampal mossy fiber synapse
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2017'
...
---
_id: '7064'
abstract:
- lang: eng
text: 'The complex antiferromagnetic orders observed in the honeycomb iridates are
a double-edged sword in the search for a quantum spin-liquid: both attesting that
the magnetic interactions provide many of the necessary ingredients, while simultaneously
impeding access. Focus has naturally been drawn to the unusual magnetic orders
that hint at the underlying spin correlations. However, the study of any particular
broken symmetry state generally provides little clue about the possibility of
other nearby ground states. Here we use magnetic fields approaching 100 Tesla
to reveal the extent of the spin correlations in γ-lithium iridate. We find that
a small component of field along the magnetic easy-axis melts long-range order,
revealing a bistable, strongly correlated spin state. Far from the usual destruction
of antiferromagnetism via spin polarization, the high-field state possesses only
a small fraction of the total iridium moment, without evidence for long-range
order up to the highest attainable magnetic fields.'
article_number: '180'
article_processing_charge: No
article_type: original
author:
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: B. J.
full_name: Ramshaw, B. J.
last_name: Ramshaw
- first_name: J. B.
full_name: Betts, J. B.
last_name: Betts
- first_name: Nicholas P.
full_name: Breznay, Nicholas P.
last_name: Breznay
- first_name: James G.
full_name: Analytis, James G.
last_name: Analytis
- first_name: Ross D.
full_name: McDonald, Ross D.
last_name: McDonald
- first_name: Arkady
full_name: Shekhter, Arkady
last_name: Shekhter
citation:
ama: Modic KA, Ramshaw BJ, Betts JB, et al. Robust spin correlations at high magnetic
fields in the harmonic honeycomb iridates. Nature Communications. 2017;8(1).
doi:10.1038/s41467-017-00264-6
apa: Modic, K. A., Ramshaw, B. J., Betts, J. B., Breznay, N. P., Analytis, J. G.,
McDonald, R. D., & Shekhter, A. (2017). Robust spin correlations at high magnetic
fields in the harmonic honeycomb iridates. Nature Communications. Springer
Nature. https://doi.org/10.1038/s41467-017-00264-6
chicago: Modic, Kimberly A, B. J. Ramshaw, J. B. Betts, Nicholas P. Breznay, James
G. Analytis, Ross D. McDonald, and Arkady Shekhter. “Robust Spin Correlations
at High Magnetic Fields in the Harmonic Honeycomb Iridates.” Nature Communications.
Springer Nature, 2017. https://doi.org/10.1038/s41467-017-00264-6.
ieee: K. A. Modic et al., “Robust spin correlations at high magnetic fields
in the harmonic honeycomb iridates,” Nature Communications, vol. 8, no.
1. Springer Nature, 2017.
ista: Modic KA, Ramshaw BJ, Betts JB, Breznay NP, Analytis JG, McDonald RD, Shekhter
A. 2017. Robust spin correlations at high magnetic fields in the harmonic honeycomb
iridates. Nature Communications. 8(1), 180.
mla: Modic, Kimberly A., et al. “Robust Spin Correlations at High Magnetic Fields
in the Harmonic Honeycomb Iridates.” Nature Communications, vol. 8, no.
1, 180, Springer Nature, 2017, doi:10.1038/s41467-017-00264-6.
short: K.A. Modic, B.J. Ramshaw, J.B. Betts, N.P. Breznay, J.G. Analytis, R.D. McDonald,
A. Shekhter, Nature Communications 8 (2017).
date_created: 2019-11-19T13:11:55Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:11:39Z
day: '01'
ddc:
- '530'
doi: 10.1038/s41467-017-00264-6
extern: '1'
file:
- access_level: open_access
checksum: 57fcd59d2f274b6b16cc89ea03cfd440
content_type: application/pdf
creator: cziletti
date_created: 2019-11-20T14:12:54Z
date_updated: 2020-07-14T12:47:48Z
file_id: '7091'
file_name: 2017_NatureComm_Modic.pdf
file_size: 1242958
relation: main_file
file_date_updated: 2020-07-14T12:47:48Z
has_accepted_license: '1'
intvolume: ' 8'
issue: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
issn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Robust spin correlations at high magnetic fields in the harmonic honeycomb
iridates
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2017'
...
---
_id: '7065'
abstract:
- lang: eng
text: Magneto-quantum oscillation experiments in high-temperature superconductors
show a strong thermally induced suppression of the oscillation amplitude approaching
the critical dopings [B. J. Ramshaw et al., Science 348, 317 (2014); H. Shishido
et al., Phys. Rev. Lett. 104, 057008 (2010); P. Walmsley et al., Phys. Rev. Lett.
110, 257002 (2013)]—in support of a quantum-critical origin of their phase diagrams.
We suggest that, in addition to a thermodynamic mass enhancement, these experiments
may directly indicate the increasing role of quantum fluctuations that suppress
the quantum oscillation amplitude through inelastic scattering. We show that the
traditional theoretical approaches beyond Lifshitz-Kosevich to calculate the oscillation
amplitude in correlated metals result in a contradiction with the third law of
thermodynamics and suggest a way to rectify this problem.
article_number: '121106'
article_processing_charge: No
article_type: original
author:
- first_name: Arkady
full_name: Shekhter, Arkady
last_name: Shekhter
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: R. D.
full_name: McDonald, R. D.
last_name: McDonald
- first_name: B. J.
full_name: Ramshaw, B. J.
last_name: Ramshaw
citation:
ama: Shekhter A, Modic KA, McDonald RD, Ramshaw BJ. Thermodynamic constraints on
the amplitude of quantum oscillations. Physical Review B. 2017;95(12).
doi:10.1103/physrevb.95.121106
apa: Shekhter, A., Modic, K. A., McDonald, R. D., & Ramshaw, B. J. (2017). Thermodynamic
constraints on the amplitude of quantum oscillations. Physical Review B.
APS. https://doi.org/10.1103/physrevb.95.121106
chicago: Shekhter, Arkady, Kimberly A Modic, R. D. McDonald, and B. J. Ramshaw.
“Thermodynamic Constraints on the Amplitude of Quantum Oscillations.” Physical
Review B. APS, 2017. https://doi.org/10.1103/physrevb.95.121106.
ieee: A. Shekhter, K. A. Modic, R. D. McDonald, and B. J. Ramshaw, “Thermodynamic
constraints on the amplitude of quantum oscillations,” Physical Review B,
vol. 95, no. 12. APS, 2017.
ista: Shekhter A, Modic KA, McDonald RD, Ramshaw BJ. 2017. Thermodynamic constraints
on the amplitude of quantum oscillations. Physical Review B. 95(12), 121106.
mla: Shekhter, Arkady, et al. “Thermodynamic Constraints on the Amplitude of Quantum
Oscillations.” Physical Review B, vol. 95, no. 12, 121106, APS, 2017, doi:10.1103/physrevb.95.121106.
short: A. Shekhter, K.A. Modic, R.D. McDonald, B.J. Ramshaw, Physical Review B 95
(2017).
date_created: 2019-11-19T13:12:27Z
date_published: 2017-03-27T00:00:00Z
date_updated: 2021-01-12T08:11:39Z
day: '27'
doi: 10.1103/physrevb.95.121106
extern: '1'
intvolume: ' 95'
issue: '12'
language:
- iso: eng
month: '03'
oa_version: None
publication: Physical Review B
publication_identifier:
eissn:
- 2469-9969
issn:
- 2469-9950
publication_status: published
publisher: APS
quality_controlled: '1'
status: public
title: Thermodynamic constraints on the amplitude of quantum oscillations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 95
year: '2017'
...
---
_id: '7066'
abstract:
- lang: eng
text: The excitonic insulator phase has long been predicted to form in proximity
to a band gap opening in the underlying band structure. The character of the pairing
is conjectured to crossover from weak (BCS-like) to strong coupling (BEC-like)
as the underlying band structure is tuned from the metallic to the insulating
side of the gap opening. Here we report the high-magnetic field phase diagram
of graphite to exhibit just such a crossover. By way of comprehensive angle-resolved
magnetoresistance measurements, we demonstrate that the underlying band gap opening
occurs inside the magnetic field-induced phase, paving the way for a systematic
study of the BCS-BEC-like crossover by means of conventional condensed matter
probes.
article_number: '1733'
article_processing_charge: No
article_type: original
author:
- first_name: Z.
full_name: Zhu, Z.
last_name: Zhu
- first_name: R. D.
full_name: McDonald, R. D.
last_name: McDonald
- first_name: A.
full_name: Shekhter, A.
last_name: Shekhter
- first_name: B. J.
full_name: Ramshaw, B. J.
last_name: Ramshaw
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: F. F.
full_name: Balakirev, F. F.
last_name: Balakirev
- first_name: N.
full_name: Harrison, N.
last_name: Harrison
citation:
ama: Zhu Z, McDonald RD, Shekhter A, et al. Magnetic field tuning of an excitonic
insulator between the weak and strong coupling regimes in quantum limit graphite.
Scientific Reports. 2017;7. doi:10.1038/s41598-017-01693-5
apa: Zhu, Z., McDonald, R. D., Shekhter, A., Ramshaw, B. J., Modic, K. A., Balakirev,
F. F., & Harrison, N. (2017). Magnetic field tuning of an excitonic insulator
between the weak and strong coupling regimes in quantum limit graphite. Scientific
Reports. Springer Nature. https://doi.org/10.1038/s41598-017-01693-5
chicago: Zhu, Z., R. D. McDonald, A. Shekhter, B. J. Ramshaw, Kimberly A Modic,
F. F. Balakirev, and N. Harrison. “Magnetic Field Tuning of an Excitonic Insulator
between the Weak and Strong Coupling Regimes in Quantum Limit Graphite.” Scientific
Reports. Springer Nature, 2017. https://doi.org/10.1038/s41598-017-01693-5.
ieee: Z. Zhu et al., “Magnetic field tuning of an excitonic insulator between
the weak and strong coupling regimes in quantum limit graphite,” Scientific
Reports, vol. 7. Springer Nature, 2017.
ista: Zhu Z, McDonald RD, Shekhter A, Ramshaw BJ, Modic KA, Balakirev FF, Harrison
N. 2017. Magnetic field tuning of an excitonic insulator between the weak and
strong coupling regimes in quantum limit graphite. Scientific Reports. 7, 1733.
mla: Zhu, Z., et al. “Magnetic Field Tuning of an Excitonic Insulator between the
Weak and Strong Coupling Regimes in Quantum Limit Graphite.” Scientific Reports,
vol. 7, 1733, Springer Nature, 2017, doi:10.1038/s41598-017-01693-5.
short: Z. Zhu, R.D. McDonald, A. Shekhter, B.J. Ramshaw, K.A. Modic, F.F. Balakirev,
N. Harrison, Scientific Reports 7 (2017).
date_created: 2019-11-19T13:17:46Z
date_published: 2017-05-04T00:00:00Z
date_updated: 2021-01-12T08:11:40Z
day: '04'
ddc:
- '530'
doi: 10.1038/s41598-017-01693-5
extern: '1'
file:
- access_level: open_access
checksum: 801f80b04ecd1ead95c8ab9827cbe067
content_type: application/pdf
creator: dernst
date_created: 2019-11-26T11:58:58Z
date_updated: 2020-07-14T12:47:48Z
file_id: '7111'
file_name: 2017_ScientificReports_Zhu.pdf
file_size: 1571567
relation: main_file
file_date_updated: 2020-07-14T12:47:48Z
has_accepted_license: '1'
intvolume: ' 7'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_identifier:
issn:
- 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Magnetic field tuning of an excitonic insulator between the weak and strong
coupling regimes in quantum limit graphite
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2017'
...
---
_id: '7067'
abstract:
- lang: eng
text: Broken fourfold rotational (C4) symmetry is observed in the experimental properties
of several classes of unconventional superconductors. It has been proposed that
this symmetry breaking is important for superconducting pairing in these materials,
but in the high-Tc cuprates this broken symmetry has never been observed on the
Fermi surface. Here we report a pronounced anisotropy in the angle dependence
of the interlayer magnetoresistance of the underdoped high transition temperature
(high-Tc) superconductor YBa2Cu3O6.58, directly revealing broken C4 symmetry on
the Fermi surface. Moreover, we demonstrate that this Fermi surface has C2 symmetry
of the type produced by a uniaxial or anisotropic density-wave phase. This establishes
the central role of C4 symmetry breaking in the Fermi surface reconstruction of
YBa2Cu3O6+δ , and suggests a striking degree of universality among unconventional
superconductors.
article_number: '8'
article_processing_charge: No
article_type: original
author:
- first_name: B. J.
full_name: Ramshaw, B. J.
last_name: Ramshaw
- first_name: N.
full_name: Harrison, N.
last_name: Harrison
- first_name: S. E.
full_name: Sebastian, S. E.
last_name: Sebastian
- first_name: S.
full_name: Ghannadzadeh, S.
last_name: Ghannadzadeh
- first_name: Kimberly A
full_name: Modic, Kimberly A
id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
last_name: Modic
orcid: 0000-0001-9760-3147
- first_name: D. A.
full_name: Bonn, D. A.
last_name: Bonn
- first_name: W. N.
full_name: Hardy, W. N.
last_name: Hardy
- first_name: Ruixing
full_name: Liang, Ruixing
last_name: Liang
- first_name: P. A.
full_name: Goddard, P. A.
last_name: Goddard
citation:
ama: Ramshaw BJ, Harrison N, Sebastian SE, et al. Broken rotational symmetry on
the Fermi surface of a high-Tc superconductor. npj Quantum Materials. 2017;2(1).
doi:10.1038/s41535-017-0013-z
apa: Ramshaw, B. J., Harrison, N., Sebastian, S. E., Ghannadzadeh, S., Modic, K.
A., Bonn, D. A., … Goddard, P. A. (2017). Broken rotational symmetry on the Fermi
surface of a high-Tc superconductor. Npj Quantum Materials. Springer Nature.
https://doi.org/10.1038/s41535-017-0013-z
chicago: Ramshaw, B. J., N. Harrison, S. E. Sebastian, S. Ghannadzadeh, Kimberly
A Modic, D. A. Bonn, W. N. Hardy, Ruixing Liang, and P. A. Goddard. “Broken Rotational
Symmetry on the Fermi Surface of a High-Tc Superconductor.” Npj Quantum Materials.
Springer Nature, 2017. https://doi.org/10.1038/s41535-017-0013-z.
ieee: B. J. Ramshaw et al., “Broken rotational symmetry on the Fermi surface
of a high-Tc superconductor,” npj Quantum Materials, vol. 2, no. 1. Springer
Nature, 2017.
ista: Ramshaw BJ, Harrison N, Sebastian SE, Ghannadzadeh S, Modic KA, Bonn DA, Hardy
WN, Liang R, Goddard PA. 2017. Broken rotational symmetry on the Fermi surface
of a high-Tc superconductor. npj Quantum Materials. 2(1), 8.
mla: Ramshaw, B. J., et al. “Broken Rotational Symmetry on the Fermi Surface of
a High-Tc Superconductor.” Npj Quantum Materials, vol. 2, no. 1, 8, Springer
Nature, 2017, doi:10.1038/s41535-017-0013-z.
short: B.J. Ramshaw, N. Harrison, S.E. Sebastian, S. Ghannadzadeh, K.A. Modic, D.A.
Bonn, W.N. Hardy, R. Liang, P.A. Goddard, Npj Quantum Materials 2 (2017).
date_created: 2019-11-19T13:18:30Z
date_published: 2017-02-13T00:00:00Z
date_updated: 2021-01-12T08:11:40Z
day: '13'
ddc:
- '530'
doi: 10.1038/s41535-017-0013-z
extern: '1'
file:
- access_level: open_access
checksum: 433a26a7e14206e139f3fec2c8ee8623
content_type: application/pdf
creator: dernst
date_created: 2019-11-26T12:57:11Z
date_updated: 2020-07-14T12:47:48Z
file_id: '7115'
file_name: 2017_NPJ_Ramshaw.pdf
file_size: 1383236
relation: main_file
file_date_updated: 2020-07-14T12:47:48Z
has_accepted_license: '1'
intvolume: ' 2'
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: npj Quantum Materials
publication_identifier:
issn:
- 2397-4648
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Broken rotational symmetry on the Fermi surface of a high-Tc superconductor
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2017'
...
---
_id: '707'
abstract:
- lang: eng
text: We answer a question of M. Gromov on the waist of the unit ball.
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
- first_name: Roman
full_name: Karasev, Roman
last_name: Karasev
citation:
ama: Akopyan A, Karasev R. A tight estimate for the waist of the ball . Bulletin
of the London Mathematical Society. 2017;49(4):690-693. doi:10.1112/blms.12062
apa: Akopyan, A., & Karasev, R. (2017). A tight estimate for the waist of the
ball . Bulletin of the London Mathematical Society. Wiley-Blackwell. https://doi.org/10.1112/blms.12062
chicago: Akopyan, Arseniy, and Roman Karasev. “A Tight Estimate for the Waist of
the Ball .” Bulletin of the London Mathematical Society. Wiley-Blackwell,
2017. https://doi.org/10.1112/blms.12062.
ieee: A. Akopyan and R. Karasev, “A tight estimate for the waist of the ball ,”
Bulletin of the London Mathematical Society, vol. 49, no. 4. Wiley-Blackwell,
pp. 690–693, 2017.
ista: Akopyan A, Karasev R. 2017. A tight estimate for the waist of the ball . Bulletin
of the London Mathematical Society. 49(4), 690–693.
mla: Akopyan, Arseniy, and Roman Karasev. “A Tight Estimate for the Waist of the
Ball .” Bulletin of the London Mathematical Society, vol. 49, no. 4, Wiley-Blackwell,
2017, pp. 690–93, doi:10.1112/blms.12062.
short: A. Akopyan, R. Karasev, Bulletin of the London Mathematical Society 49 (2017)
690–693.
date_created: 2018-12-11T11:48:02Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:11:41Z
day: '01'
department:
- _id: HeEd
doi: 10.1112/blms.12062
ec_funded: 1
intvolume: ' 49'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1608.06279
month: '08'
oa: 1
oa_version: Preprint
page: 690 - 693
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Bulletin of the London Mathematical Society
publication_identifier:
issn:
- '00246093'
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6982'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'A tight estimate for the waist of the ball '
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 49
year: '2017'
...
---
_id: '708'
abstract:
- lang: eng
text: 'In the developing and adult brain, oligodendrocyte precursor cells (OPCs)
are influenced by neuronal activity: they are involved in synaptic signaling with
neurons, and their proliferation and differentiation into myelinating glia can
be altered by transient changes in neuronal firing. An important question that
has been unanswered is whether OPCs can discriminate different patterns of neuronal
activity and respond to them in a distinct way. Here, we demonstrate in brain
slices that the pattern of neuronal activity determines the functional changes
triggered at synapses between axons and OPCs. Furthermore, we show that stimulation
of the corpus callosum at different frequencies in vivo affects proliferation
and differentiation of OPCs in a dissimilar way. Our findings suggest that neurons
do not influence OPCs in “all-or-none” fashion but use their firing pattern to
tune the response and behavior of these nonneuronal cells.'
article_number: e2001993
author:
- first_name: Balint
full_name: Nagy, Balint
id: 30F830CE-02D1-11E9-9BAA-DAF4881429F2
last_name: Nagy
orcid: 0000-0002-4002-4686
- first_name: Anahit
full_name: Hovhannisyan, Anahit
last_name: Hovhannisyan
- first_name: Ruxandra
full_name: Barzan, Ruxandra
last_name: Barzan
- first_name: Ting
full_name: Chen, Ting
last_name: Chen
- first_name: Maria
full_name: Kukley, Maria
last_name: Kukley
citation:
ama: Nagy B, Hovhannisyan A, Barzan R, Chen T, Kukley M. Different patterns of neuronal
activity trigger distinct responses of oligodendrocyte precursor cells in the
corpus callosum. PLoS Biology. 2017;15(8). doi:10.1371/journal.pbio.2001993
apa: Nagy, B., Hovhannisyan, A., Barzan, R., Chen, T., & Kukley, M. (2017).
Different patterns of neuronal activity trigger distinct responses of oligodendrocyte
precursor cells in the corpus callosum. PLoS Biology. Public Library of
Science. https://doi.org/10.1371/journal.pbio.2001993
chicago: Nagy, Balint, Anahit Hovhannisyan, Ruxandra Barzan, Ting Chen, and Maria
Kukley. “Different Patterns of Neuronal Activity Trigger Distinct Responses of
Oligodendrocyte Precursor Cells in the Corpus Callosum.” PLoS Biology.
Public Library of Science, 2017. https://doi.org/10.1371/journal.pbio.2001993.
ieee: B. Nagy, A. Hovhannisyan, R. Barzan, T. Chen, and M. Kukley, “Different patterns
of neuronal activity trigger distinct responses of oligodendrocyte precursor cells
in the corpus callosum,” PLoS Biology, vol. 15, no. 8. Public Library of
Science, 2017.
ista: Nagy B, Hovhannisyan A, Barzan R, Chen T, Kukley M. 2017. Different patterns
of neuronal activity trigger distinct responses of oligodendrocyte precursor cells
in the corpus callosum. PLoS Biology. 15(8), e2001993.
mla: Nagy, Balint, et al. “Different Patterns of Neuronal Activity Trigger Distinct
Responses of Oligodendrocyte Precursor Cells in the Corpus Callosum.” PLoS
Biology, vol. 15, no. 8, e2001993, Public Library of Science, 2017, doi:10.1371/journal.pbio.2001993.
short: B. Nagy, A. Hovhannisyan, R. Barzan, T. Chen, M. Kukley, PLoS Biology 15
(2017).
date_created: 2018-12-11T11:48:03Z
date_published: 2017-08-22T00:00:00Z
date_updated: 2021-01-12T08:11:45Z
day: '22'
ddc:
- '576'
- '610'
department:
- _id: SaSi
doi: 10.1371/journal.pbio.2001993
file:
- access_level: open_access
checksum: 0c974f430682dc832ea7b27ab5a93124
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:15:35Z
date_updated: 2020-07-14T12:47:49Z
file_id: '5156'
file_name: IST-2017-889-v1+1_journal.pbio.2001993.pdf
file_size: 18155365
relation: main_file
file_date_updated: 2020-07-14T12:47:49Z
has_accepted_license: '1'
intvolume: ' 15'
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: PLoS Biology
publication_identifier:
issn:
- '15449173'
publication_status: published
publisher: Public Library of Science
publist_id: '6983'
pubrep_id: '889'
quality_controlled: '1'
scopus_import: 1
status: public
title: Different patterns of neuronal activity trigger distinct responses of oligodendrocyte
precursor cells in the corpus callosum
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2017'
...
---
_id: '709'
abstract:
- lang: eng
text: Adipose tissues play key roles in energy homeostasis. Brown adipocytes and
beige adipocytes in white adipose tissue (WAT) share the similar characters of
thermogenesis, both of them could be potential targets for obesity management.
Several thermo-sensitive transient receptor potential channels (thermoTRPs) are
shown to be involved in adipocyte biology. However, the expression pattern of
thermoTRPs in adipose tissues from obese mice is still unknown. The mRNA expression
of thermoTRPs in subcutaneous WAT (sWAT) and interscapular brown adipose tissue
(iBAT) from lean and obese mice were measured using reverse transcriptase-quantitative
PCRs (RT-qPCR). The results demonstrated that all 10 thermoTRPs are expressed
in both iBAT and sWAT, and without significant difference in the mRNA expression
level of thermoTRPs between these two tissues. Moreover, Trpv1 and Trpv3 mRNA
expression levels in both iBAT and sWAT were significantly decreased in high fat
diet (HFD)-induced obese mice and db/db (leptin receptor deficient) mice. Trpm2
mRNA expression level was significantly decreased only in sWAT from HFD-induced
obese mice and db/db mice. On the other hand, Trpv2 and Trpv4 mRNA expression
levels in iBAT and sWAT were significantly increased in HFD-induced obese mice
and db/db mice. Taken together, we conclude that all 10 thermoTRPs are expressed
in iBAT and sWAT. And several thermoTRPs differentially expressed in adipose tissues
from HFD-induced obese mice and db/db mice, suggesting a potential involvement
in anti-obesity regulations.
author:
- first_name: Wuping
full_name: Sun, Wuping
last_name: Sun
- first_name: Chen
full_name: Li, Chen
last_name: Li
- first_name: Yonghong
full_name: Zhang, Yonghong
last_name: Zhang
- first_name: Changyu
full_name: Jiang, Changyu
last_name: Jiang
- first_name: Ming-Zhu
full_name: Zhai, Ming-Zhu
id: 34009CFA-F248-11E8-B48F-1D18A9856A87
last_name: Zhai
- first_name: Qian
full_name: Zhou, Qian
last_name: Zhou
- first_name: Lizu
full_name: Xiao, Lizu
last_name: Xiao
- first_name: Qiwen
full_name: Deng, Qiwen
last_name: Deng
citation:
ama: Sun W, Li C, Zhang Y, et al. Gene expression changes of thermo sensitive transient
receptor potential channels in obese mice. Cell Biology International.
2017;41(8):908-913. doi:10.1002/cbin.10783
apa: Sun, W., Li, C., Zhang, Y., Jiang, C., Zhai, M.-Z., Zhou, Q., … Deng, Q. (2017).
Gene expression changes of thermo sensitive transient receptor potential channels
in obese mice. Cell Biology International. Wiley-Blackwell. https://doi.org/10.1002/cbin.10783
chicago: Sun, Wuping, Chen Li, Yonghong Zhang, Changyu Jiang, Ming-Zhu Zhai, Qian
Zhou, Lizu Xiao, and Qiwen Deng. “Gene Expression Changes of Thermo Sensitive
Transient Receptor Potential Channels in Obese Mice.” Cell Biology International.
Wiley-Blackwell, 2017. https://doi.org/10.1002/cbin.10783.
ieee: W. Sun et al., “Gene expression changes of thermo sensitive transient
receptor potential channels in obese mice,” Cell Biology International,
vol. 41, no. 8. Wiley-Blackwell, pp. 908–913, 2017.
ista: Sun W, Li C, Zhang Y, Jiang C, Zhai M-Z, Zhou Q, Xiao L, Deng Q. 2017. Gene
expression changes of thermo sensitive transient receptor potential channels in
obese mice. Cell Biology International. 41(8), 908–913.
mla: Sun, Wuping, et al. “Gene Expression Changes of Thermo Sensitive Transient
Receptor Potential Channels in Obese Mice.” Cell Biology International,
vol. 41, no. 8, Wiley-Blackwell, 2017, pp. 908–13, doi:10.1002/cbin.10783.
short: W. Sun, C. Li, Y. Zhang, C. Jiang, M.-Z. Zhai, Q. Zhou, L. Xiao, Q. Deng,
Cell Biology International 41 (2017) 908–913.
date_created: 2018-12-11T11:48:04Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:11:47Z
day: '01'
department:
- _id: RySh
doi: 10.1002/cbin.10783
intvolume: ' 41'
issue: '8'
language:
- iso: eng
month: '08'
oa_version: None
page: 908 - 913
publication: Cell Biology International
publication_identifier:
issn:
- '10656995'
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6981'
quality_controlled: '1'
scopus_import: 1
status: public
title: Gene expression changes of thermo sensitive transient receptor potential channels
in obese mice
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 41
year: '2017'
...
---
_id: '710'
abstract:
- lang: eng
text: 'We revisit the problem of estimating entropy of discrete distributions from
independent samples, studied recently by Acharya, Orlitsky, Suresh and Tyagi (SODA
2015), improving their upper and lower bounds on the necessary sample size n.
For estimating Renyi entropy of order alpha, up to constant accuracy and error
probability, we show the following * Upper bounds n = O(1) 2^{(1-1/alpha)H_alpha}
for integer alpha>1, as the worst case over distributions with Renyi entropy
equal to H_alpha. * Lower bounds n = Omega(1) K^{1-1/alpha} for any real alpha>1,
with the constant being an inverse polynomial of the accuracy, as the worst case
over all distributions on K elements. Our upper bounds essentially replace the
alphabet size by a factor exponential in the entropy, which offers improvements
especially in low or medium entropy regimes (interesting for example in anomaly
detection). As for the lower bounds, our proof explicitly shows how the complexity
depends on both alphabet and accuracy, partially solving the open problem posted
in previous works. The argument for upper bounds derives a clean identity for
the variance of falling-power sum of a multinomial distribution. Our approach
for lower bounds utilizes convex optimization to find a distribution with possibly
worse estimation performance, and may be of independent interest as a tool to
work with Le Cam’s two point method. '
alternative_title:
- LIPIcs
article_number: '20'
author:
- first_name: Maciej
full_name: Obremski, Maciej
last_name: Obremski
- first_name: Maciej
full_name: Skórski, Maciej
id: EC09FA6A-02D0-11E9-8223-86B7C91467DD
last_name: Skórski
citation:
ama: 'Obremski M, Skórski M. Renyi entropy estimation revisited. In: Vol 81. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik; 2017. doi:10.4230/LIPIcs.APPROX-RANDOM.2017.20'
apa: 'Obremski, M., & Skórski, M. (2017). Renyi entropy estimation revisited
(Vol. 81). Presented at the 20th International Workshop on Approximation Algorithms
for Combinatorial Optimization Problems, APPROX, Berkeley, USA: Schloss Dagstuhl
- Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.APPROX-RANDOM.2017.20'
chicago: Obremski, Maciej, and Maciej Skórski. “Renyi Entropy Estimation Revisited,”
Vol. 81. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017. https://doi.org/10.4230/LIPIcs.APPROX-RANDOM.2017.20.
ieee: M. Obremski and M. Skórski, “Renyi entropy estimation revisited,” presented
at the 20th International Workshop on Approximation Algorithms for Combinatorial
Optimization Problems, APPROX, Berkeley, USA, 2017, vol. 81.
ista: Obremski M, Skórski M. 2017. Renyi entropy estimation revisited. 20th International
Workshop on Approximation Algorithms for Combinatorial Optimization Problems,
APPROX, LIPIcs, vol. 81, 20.
mla: Obremski, Maciej, and Maciej Skórski. Renyi Entropy Estimation Revisited.
Vol. 81, 20, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017, doi:10.4230/LIPIcs.APPROX-RANDOM.2017.20.
short: M. Obremski, M. Skórski, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2017.
conference:
end_date: 2017-08-18
location: Berkeley, USA
name: 20th International Workshop on Approximation Algorithms for Combinatorial
Optimization Problems, APPROX
start_date: 2017-08-18
date_created: 2018-12-11T11:48:04Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:11:50Z
day: '01'
ddc:
- '005'
- '600'
department:
- _id: KrPi
doi: 10.4230/LIPIcs.APPROX-RANDOM.2017.20
ec_funded: 1
file:
- access_level: open_access
checksum: 89225c7dcec2c93838458c9102858985
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:10Z
date_updated: 2020-07-14T12:47:49Z
file_id: '4991'
file_name: IST-2017-888-v1+1_LIPIcs-APPROX-RANDOM-2017-20.pdf
file_size: 604813
relation: main_file
file_date_updated: 2020-07-14T12:47:49Z
has_accepted_license: '1'
intvolume: ' 81'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication_identifier:
issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '6979'
pubrep_id: '888'
quality_controlled: '1'
scopus_import: 1
status: public
title: Renyi entropy estimation revisited
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 81
year: '2017'
...
---
_id: '711'
abstract:
- lang: eng
text: Nested weighted automata (NWA) present a robust and convenient automata-theoretic
formalism for quantitative specifications. Previous works have considered NWA
that processed input words only in the forward direction. It is natural to allow
the automata to process input words backwards as well, for example, to measure
the maximal or average time between a response and the preceding request. We therefore
introduce and study bidirectional NWA that can process input words in both directions.
First, we show that bidirectional NWA can express interesting quantitative properties
that are not expressible by forward-only NWA. Second, for the fundamental decision
problems of emptiness and universality, we establish decidability and complexity
results for the new framework which match the best-known results for the special
case of forward-only NWA. Thus, for NWA, the increased expressiveness of bidirectionality
is achieved at no additional computational complexity. This is in stark contrast
to the unweighted case, where bidirectional finite automata are no more expressive
but exponentially more succinct than their forward-only counterparts.
alternative_title:
- LIPIcs
article_number: '5'
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Jan
full_name: Otop, Jan
last_name: Otop
citation:
ama: 'Chatterjee K, Henzinger TA, Otop J. Bidirectional nested weighted automata.
In: Vol 85. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2017. doi:10.4230/LIPIcs.CONCUR.2017.5'
apa: 'Chatterjee, K., Henzinger, T. A., & Otop, J. (2017). Bidirectional nested
weighted automata (Vol. 85). Presented at the 28th International Conference on
Concurrency Theory, CONCUR, Berlin, Germany: Schloss Dagstuhl - Leibniz-Zentrum
für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2017.5'
chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. “Bidirectional
Nested Weighted Automata,” Vol. 85. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2017. https://doi.org/10.4230/LIPIcs.CONCUR.2017.5.
ieee: K. Chatterjee, T. A. Henzinger, and J. Otop, “Bidirectional nested weighted
automata,” presented at the 28th International Conference on Concurrency Theory,
CONCUR, Berlin, Germany, 2017, vol. 85.
ista: Chatterjee K, Henzinger TA, Otop J. 2017. Bidirectional nested weighted automata.
28th International Conference on Concurrency Theory, CONCUR, LIPIcs, vol. 85,
5.
mla: Chatterjee, Krishnendu, et al. Bidirectional Nested Weighted Automata.
Vol. 85, 5, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017, doi:10.4230/LIPIcs.CONCUR.2017.5.
short: K. Chatterjee, T.A. Henzinger, J. Otop, in:, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2017.
conference:
end_date: 2017-09-08
location: Berlin, Germany
name: 28th International Conference on Concurrency Theory, CONCUR
start_date: 2017-09-05
date_created: 2018-12-11T11:48:04Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:11:53Z
day: '01'
ddc:
- '004'
- '005'
department:
- _id: KrCh
- _id: ToHe
doi: 10.4230/LIPIcs.CONCUR.2017.5
file:
- access_level: open_access
checksum: d2bda4783821a6358333fe27f11f4737
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:02Z
date_updated: 2020-07-14T12:47:49Z
file_id: '4661'
file_name: IST-2017-886-v1+1_LIPIcs-CONCUR-2017-5.pdf
file_size: 570294
relation: main_file
file_date_updated: 2020-07-14T12:47:49Z
has_accepted_license: '1'
intvolume: ' 85'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication_identifier:
issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '6976'
pubrep_id: '886'
quality_controlled: '1'
scopus_import: 1
status: public
title: Bidirectional nested weighted automata
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2017'
...
---
_id: '712'
abstract:
- lang: eng
text: 'We establish a weak–strong uniqueness principle for solutions to entropy-dissipating
reaction–diffusion equations: As long as a strong solution to the reaction–diffusion
equation exists, any weak solution and even any renormalized solution must coincide
with this strong solution. Our assumptions on the reaction rates are just the
entropy condition and local Lipschitz continuity; in particular, we do not impose
any growth restrictions on the reaction rates. Therefore, our result applies to
any single reversible reaction with mass-action kinetics as well as to systems
of reversible reactions with mass-action kinetics satisfying the detailed balance
condition. Renormalized solutions are known to exist globally in time for reaction–diffusion
equations with entropy-dissipating reaction rates; in contrast, the global-in-time
existence of weak solutions is in general still an open problem–even for smooth
data–, thereby motivating the study of renormalized solutions. The key ingredient
of our result is a careful adjustment of the usual relative entropy functional,
whose evolution cannot be controlled properly for weak solutions or renormalized
solutions.'
author:
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
citation:
ama: 'Fischer JL. Weak–strong uniqueness of solutions to entropy dissipating reaction–diffusion
equations. Nonlinear Analysis: Theory, Methods and Applications. 2017;159:181-207.
doi:10.1016/j.na.2017.03.001'
apa: 'Fischer, J. L. (2017). Weak–strong uniqueness of solutions to entropy dissipating
reaction–diffusion equations. Nonlinear Analysis: Theory, Methods and Applications.
Elsevier. https://doi.org/10.1016/j.na.2017.03.001'
chicago: 'Fischer, Julian L. “Weak–Strong Uniqueness of Solutions to Entropy Dissipating
Reaction–Diffusion Equations.” Nonlinear Analysis: Theory, Methods and Applications.
Elsevier, 2017. https://doi.org/10.1016/j.na.2017.03.001.'
ieee: 'J. L. Fischer, “Weak–strong uniqueness of solutions to entropy dissipating
reaction–diffusion equations,” Nonlinear Analysis: Theory, Methods and Applications,
vol. 159. Elsevier, pp. 181–207, 2017.'
ista: 'Fischer JL. 2017. Weak–strong uniqueness of solutions to entropy dissipating
reaction–diffusion equations. Nonlinear Analysis: Theory, Methods and Applications.
159, 181–207.'
mla: 'Fischer, Julian L. “Weak–Strong Uniqueness of Solutions to Entropy Dissipating
Reaction–Diffusion Equations.” Nonlinear Analysis: Theory, Methods and Applications,
vol. 159, Elsevier, 2017, pp. 181–207, doi:10.1016/j.na.2017.03.001.'
short: 'J.L. Fischer, Nonlinear Analysis: Theory, Methods and Applications 159 (2017)
181–207.'
date_created: 2018-12-11T11:48:05Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:11:55Z
day: '01'
department:
- _id: JuFi
doi: 10.1016/j.na.2017.03.001
intvolume: ' 159'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1703.00730
month: '08'
oa: 1
oa_version: Submitted Version
page: 181 - 207
publication: 'Nonlinear Analysis: Theory, Methods and Applications'
publication_identifier:
issn:
- 0362546X
publication_status: published
publisher: Elsevier
publist_id: '6975'
quality_controlled: '1'
scopus_import: 1
status: public
title: Weak–strong uniqueness of solutions to entropy dissipating reaction–diffusion
equations
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 159
year: '2017'
...
---
_id: '713'
abstract:
- lang: eng
text: To determine the dynamics of allelic-specific expression during mouse development,
we analyzed RNA-seq data from 23 F1 tissues from different developmental stages,
including 19 female tissues allowing X chromosome inactivation (XCI) escapers
to also be detected. We demonstrate that allelic expression arising from genetic
or epigenetic differences is highly tissue-specific. We find that tissue-specific
strain-biased gene expression may be regulated by tissue-specific enhancers or
by post-transcriptional differences in stability between the alleles. We also
find that escape from X-inactivation is tissue-specific, with leg muscle showing
an unexpectedly high rate of XCI escapers. By surveying a range of tissues during
development, and performing extensive validation, we are able to provide a high
confidence list of mouse imprinted genes including 18 novel genes. This shows
that cluster size varies dynamically during development and can be substantially
larger than previously thought, with the Igf2r cluster extending over 10 Mb in
placenta.
article_number: e25125
author:
- first_name: Daniel
full_name: Andergassen, Daniel
last_name: Andergassen
- first_name: Christoph
full_name: Dotter, Christoph
id: 4C66542E-F248-11E8-B48F-1D18A9856A87
last_name: Dotter
- first_name: Dyniel
full_name: Wenzel, Dyniel
last_name: Wenzel
- first_name: Verena
full_name: Sigl, Verena
last_name: Sigl
- first_name: Philipp
full_name: Bammer, Philipp
last_name: Bammer
- first_name: Markus
full_name: Muckenhuber, Markus
last_name: Muckenhuber
- first_name: Daniela
full_name: Mayer, Daniela
last_name: Mayer
- first_name: Tomasz
full_name: Kulinski, Tomasz
last_name: Kulinski
- first_name: Hans
full_name: Theussl, Hans
last_name: Theussl
- first_name: Josef
full_name: Penninger, Josef
last_name: Penninger
- first_name: Christoph
full_name: Bock, Christoph
last_name: Bock
- first_name: Denise
full_name: Barlow, Denise
last_name: Barlow
- first_name: Florian
full_name: Pauler, Florian
id: 48EA0138-F248-11E8-B48F-1D18A9856A87
last_name: Pauler
- first_name: Quanah
full_name: Hudson, Quanah
last_name: Hudson
citation:
ama: Andergassen D, Dotter C, Wenzel D, et al. Mapping the mouse Allelome reveals
tissue specific regulation of allelic expression. eLife. 2017;6. doi:10.7554/eLife.25125
apa: Andergassen, D., Dotter, C., Wenzel, D., Sigl, V., Bammer, P., Muckenhuber,
M., … Hudson, Q. (2017). Mapping the mouse Allelome reveals tissue specific regulation
of allelic expression. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.25125
chicago: Andergassen, Daniel, Christoph Dotter, Dyniel Wenzel, Verena Sigl, Philipp
Bammer, Markus Muckenhuber, Daniela Mayer, et al. “Mapping the Mouse Allelome
Reveals Tissue Specific Regulation of Allelic Expression.” ELife. eLife
Sciences Publications, 2017. https://doi.org/10.7554/eLife.25125.
ieee: D. Andergassen et al., “Mapping the mouse Allelome reveals tissue specific
regulation of allelic expression,” eLife, vol. 6. eLife Sciences Publications,
2017.
ista: Andergassen D, Dotter C, Wenzel D, Sigl V, Bammer P, Muckenhuber M, Mayer
D, Kulinski T, Theussl H, Penninger J, Bock C, Barlow D, Pauler F, Hudson Q. 2017.
Mapping the mouse Allelome reveals tissue specific regulation of allelic expression.
eLife. 6, e25125.
mla: Andergassen, Daniel, et al. “Mapping the Mouse Allelome Reveals Tissue Specific
Regulation of Allelic Expression.” ELife, vol. 6, e25125, eLife Sciences
Publications, 2017, doi:10.7554/eLife.25125.
short: D. Andergassen, C. Dotter, D. Wenzel, V. Sigl, P. Bammer, M. Muckenhuber,
D. Mayer, T. Kulinski, H. Theussl, J. Penninger, C. Bock, D. Barlow, F. Pauler,
Q. Hudson, ELife 6 (2017).
date_created: 2018-12-11T11:48:05Z
date_published: 2017-08-14T00:00:00Z
date_updated: 2021-01-12T08:11:57Z
day: '14'
ddc:
- '576'
department:
- _id: GaNo
- _id: SiHi
doi: 10.7554/eLife.25125
file:
- access_level: open_access
checksum: 1ace3462e64a971b9ead896091829549
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:36Z
date_updated: 2020-07-14T12:47:50Z
file_id: '5020'
file_name: IST-2017-885-v1+1_elife-25125-figures-v2.pdf
file_size: 6399510
relation: main_file
- access_level: open_access
checksum: 6241dc31eeb87b03facadec3a53a6827
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:36Z
date_updated: 2020-07-14T12:47:50Z
file_id: '5021'
file_name: IST-2017-885-v1+2_elife-25125-v2.pdf
file_size: 4264398
relation: main_file
file_date_updated: 2020-07-14T12:47:50Z
has_accepted_license: '1'
intvolume: ' 6'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25E9AF9E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27201-B22
name: Revealing the mechanisms underlying drug interactions
publication: eLife
publication_identifier:
issn:
- 2050084X
publication_status: published
publisher: eLife Sciences Publications
publist_id: '6971'
pubrep_id: '885'
quality_controlled: '1'
scopus_import: 1
status: public
title: Mapping the mouse Allelome reveals tissue specific regulation of allelic expression
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2017'
...
---
_id: '714'
abstract:
- lang: eng
text: Background HIV-1 infection and drug abuse are frequently co-morbid and their
association greatly increases the severity of HIV-1-induced neuropathology. While
nucleus accumbens (NAcc) function is severely perturbed by drugs of abuse, little
is known about how HIV-1 infection affects NAcc. Methods We used calcium and voltage
imaging to investigate the effect of HIV-1 trans-activator of transcription (Tat)
on rat NAcc. Based on previous neuronal studies, we hypothesized that Tat modulates
intracellular Ca2+ homeostasis of NAcc neurons. Results We provide evidence that
Tat triggers a Ca2+ signaling cascade in NAcc medium spiny neurons (MSN) expressing
D1-like dopamine receptors leading to neuronal depolarization. Firstly, Tat induced
inositol 1,4,5-trisphsophate (IP3) receptor-mediated Ca2+ release from endoplasmic
reticulum, followed by Ca2+ and Na+ influx via transient receptor potential canonical
channels. The influx of cations depolarizes the membrane promoting additional
Ca2+ entry through voltage-gated P/Q-type Ca2+ channels and opening of tetrodotoxin-sensitive
Na+ channels. By activating this mechanism, Tat elicits a feed-forward depolarization
increasing the excitability of D1-phosphatidylinositol-linked NAcc MSN. We previously
found that cocaine targets NAcc neurons directly (independent of the inhibition
of dopamine transporter) only when IP3-generating mechanisms are concomitantly
initiated. When tested here, cocaine produced a dose-dependent potentiation of
the effect of Tat on cytosolic Ca2+. Conclusion We describe for the first time
a HIV-1 Tat-triggered Ca2+ signaling in MSN of NAcc involving TRPC and depolarization
and a potentiation of the effect of Tat by cocaine, which may be relevant for
the reward axis in cocaine-abusing HIV-1-positive patients.
acknowledgement: This work was supported by the National Institutes of Health grants
DA035926 (to MEA), and P30DA013429 (to EMU).
article_processing_charge: No
article_type: original
author:
- first_name: Gabriela
full_name: Brailoiu, Gabriela
last_name: Brailoiu
- first_name: Elena
full_name: Deliu, Elena
id: 37A40D7E-F248-11E8-B48F-1D18A9856A87
last_name: Deliu
orcid: 0000-0002-7370-5293
- first_name: Jeffrey
full_name: Barr, Jeffrey
last_name: Barr
- first_name: Linda
full_name: Console Bram, Linda
last_name: Console Bram
- first_name: Alexandra
full_name: Ciuciu, Alexandra
last_name: Ciuciu
- first_name: Mary
full_name: Abood, Mary
last_name: Abood
- first_name: Ellen
full_name: Unterwald, Ellen
last_name: Unterwald
- first_name: Eugen
full_name: Brǎiloiu, Eugen
last_name: Brǎiloiu
citation:
ama: Brailoiu G, Deliu E, Barr J, et al. HIV Tat excites D1 receptor-like expressing
neurons from rat nucleus accumbens. Drug and Alcohol Dependence. 2017;178:7-14.
doi:10.1016/j.drugalcdep.2017.04.015
apa: Brailoiu, G., Deliu, E., Barr, J., Console Bram, L., Ciuciu, A., Abood, M.,
… Brǎiloiu, E. (2017). HIV Tat excites D1 receptor-like expressing neurons from
rat nucleus accumbens. Drug and Alcohol Dependence. Elsevier. https://doi.org/10.1016/j.drugalcdep.2017.04.015
chicago: Brailoiu, Gabriela, Elena Deliu, Jeffrey Barr, Linda Console Bram, Alexandra
Ciuciu, Mary Abood, Ellen Unterwald, and Eugen Brǎiloiu. “HIV Tat Excites D1 Receptor-like
Expressing Neurons from Rat Nucleus Accumbens.” Drug and Alcohol Dependence.
Elsevier, 2017. https://doi.org/10.1016/j.drugalcdep.2017.04.015.
ieee: G. Brailoiu et al., “HIV Tat excites D1 receptor-like expressing neurons
from rat nucleus accumbens,” Drug and Alcohol Dependence, vol. 178. Elsevier,
pp. 7–14, 2017.
ista: Brailoiu G, Deliu E, Barr J, Console Bram L, Ciuciu A, Abood M, Unterwald
E, Brǎiloiu E. 2017. HIV Tat excites D1 receptor-like expressing neurons from
rat nucleus accumbens. Drug and Alcohol Dependence. 178, 7–14.
mla: Brailoiu, Gabriela, et al. “HIV Tat Excites D1 Receptor-like Expressing Neurons
from Rat Nucleus Accumbens.” Drug and Alcohol Dependence, vol. 178, Elsevier,
2017, pp. 7–14, doi:10.1016/j.drugalcdep.2017.04.015.
short: G. Brailoiu, E. Deliu, J. Barr, L. Console Bram, A. Ciuciu, M. Abood, E.
Unterwald, E. Brǎiloiu, Drug and Alcohol Dependence 178 (2017) 7–14.
date_created: 2018-12-11T11:48:05Z
date_published: 2017-09-01T00:00:00Z
date_updated: 2021-01-12T08:12:00Z
day: '01'
department:
- _id: GaNo
doi: 10.1016/j.drugalcdep.2017.04.015
external_id:
pmid:
- '28623807'
intvolume: ' 178'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5797705
month: '09'
oa: 1
oa_version: Submitted Version
page: 7 - 14
pmid: 1
publication: Drug and Alcohol Dependence
publication_identifier:
issn:
- '03768716'
publication_status: published
publisher: Elsevier
publist_id: '6967'
quality_controlled: '1'
scopus_import: 1
status: public
title: HIV Tat excites D1 receptor-like expressing neurons from rat nucleus accumbens
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 178
year: '2017'
...