---
_id: '8236'
abstract:
- lang: eng
  text: Th2 immunity and allergic immune surveillance play critical roles in host
    responses to pathogens, parasites and allergens. Numerous studies have reported
    significant links between Th2 responses and cancer, including insights into the
    functions of IgE antibodies and associated effector cells in both antitumour immune
    surveillance and therapy. The interdisciplinary field of AllergoOncology was given
    Task Force status by the European Academy of Allergy and Clinical Immunology in
    2014. Affiliated expert groups focus on the interface between allergic responses
    and cancer, applied to immune surveillance, immunomodulation and the functions
    of IgE‐mediated immune responses against cancer, to derive novel insights into
    more effective treatments. Coincident with rapid expansion in clinical application
    of cancer immunotherapies, here we review the current state‐of‐the‐art and future
    translational opportunities, as well as challenges in this relatively new field.
    Recent developments include improved understanding of Th2 antibodies, intratumoral
    innate allergy effector cells and mediators, IgE‐mediated tumour antigen cross‐presentation
    by dendritic cells, as well as immunotherapeutic strategies such as vaccines and
    recombinant antibodies, and finally, the management of allergy in daily clinical
    oncology. Shedding light on the crosstalk between allergic response and cancer
    is paving the way for new avenues of treatment.
article_processing_charge: No
article_type: original
author:
- first_name: E.
  full_name: Jensen-Jarolim, E.
  last_name: Jensen-Jarolim
  orcid: 0000-0003-4019-5765
- first_name: H. J.
  full_name: Bax, H. J.
  last_name: Bax
- first_name: R.
  full_name: Bianchini, R.
  last_name: Bianchini
- first_name: M.
  full_name: Capron, M.
  last_name: Capron
- first_name: C.
  full_name: Corrigan, C.
  last_name: Corrigan
- first_name: M.
  full_name: Castells, M.
  last_name: Castells
- first_name: D.
  full_name: Dombrowicz, D.
  last_name: Dombrowicz
- first_name: T. R.
  full_name: Daniels-Wells, T. R.
  last_name: Daniels-Wells
- first_name: Judit
  full_name: Fazekas, Judit
  id: 36432834-F248-11E8-B48F-1D18A9856A87
  last_name: Fazekas
  orcid: 0000-0002-8777-3502
- first_name: E.
  full_name: Fiebiger, E.
  last_name: Fiebiger
- first_name: S.
  full_name: Gatault, S.
  last_name: Gatault
- first_name: H. J.
  full_name: Gould, H. J.
  last_name: Gould
- first_name: J.
  full_name: Janda, J.
  last_name: Janda
- first_name: D. H.
  full_name: Josephs, D. H.
  last_name: Josephs
- first_name: P.
  full_name: Karagiannis, P.
  last_name: Karagiannis
- first_name: F.
  full_name: Levi-Schaffer, F.
  last_name: Levi-Schaffer
- first_name: A.
  full_name: Meshcheryakova, A.
  last_name: Meshcheryakova
- first_name: D.
  full_name: Mechtcheriakova, D.
  last_name: Mechtcheriakova
- first_name: Y.
  full_name: Mekori, Y.
  last_name: Mekori
- first_name: F.
  full_name: Mungenast, F.
  last_name: Mungenast
- first_name: E. A.
  full_name: Nigro, E. A.
  last_name: Nigro
- first_name: M. L.
  full_name: Penichet, M. L.
  last_name: Penichet
- first_name: F.
  full_name: Redegeld, F.
  last_name: Redegeld
- first_name: L.
  full_name: Saul, L.
  last_name: Saul
- first_name: J.
  full_name: Singer, J.
  last_name: Singer
- first_name: J. F.
  full_name: Spicer, J. F.
  last_name: Spicer
- first_name: A. G.
  full_name: Siccardi, A. G.
  last_name: Siccardi
- first_name: E.
  full_name: Spillner, E.
  last_name: Spillner
- first_name: M. C.
  full_name: Turner, M. C.
  last_name: Turner
- first_name: E.
  full_name: Untersmayr, E.
  last_name: Untersmayr
- first_name: L.
  full_name: Vangelista, L.
  last_name: Vangelista
- first_name: S. N.
  full_name: Karagiannis, S. N.
  last_name: Karagiannis
citation:
  ama: 'Jensen-Jarolim E, Bax HJ, Bianchini R, et al. AllergoOncology - the impact
    of allergy in oncology: EAACI position paper. <i>Allergy</i>. 2017;72(6):866-887.
    doi:<a href="https://doi.org/10.1111/all.13119">10.1111/all.13119</a>'
  apa: 'Jensen-Jarolim, E., Bax, H. J., Bianchini, R., Capron, M., Corrigan, C., Castells,
    M., … Karagiannis, S. N. (2017). AllergoOncology - the impact of allergy in oncology:
    EAACI position paper. <i>Allergy</i>. Wiley. <a href="https://doi.org/10.1111/all.13119">https://doi.org/10.1111/all.13119</a>'
  chicago: 'Jensen-Jarolim, E., H. J. Bax, R. Bianchini, M. Capron, C. Corrigan, M.
    Castells, D. Dombrowicz, et al. “AllergoOncology - the Impact of Allergy in Oncology:
    EAACI Position Paper.” <i>Allergy</i>. Wiley, 2017. <a href="https://doi.org/10.1111/all.13119">https://doi.org/10.1111/all.13119</a>.'
  ieee: 'E. Jensen-Jarolim <i>et al.</i>, “AllergoOncology - the impact of allergy
    in oncology: EAACI position paper,” <i>Allergy</i>, vol. 72, no. 6. Wiley, pp.
    866–887, 2017.'
  ista: 'Jensen-Jarolim E, Bax HJ, Bianchini R, Capron M, Corrigan C, Castells M,
    Dombrowicz D, Daniels-Wells TR, Singer J, Fiebiger E, Gatault S, Gould HJ, Janda
    J, Josephs DH, Karagiannis P, Levi-Schaffer F, Meshcheryakova A, Mechtcheriakova
    D, Mekori Y, Mungenast F, Nigro EA, Penichet ML, Redegeld F, Saul L, Singer J,
    Spicer JF, Siccardi AG, Spillner E, Turner MC, Untersmayr E, Vangelista L, Karagiannis
    SN. 2017. AllergoOncology - the impact of allergy in oncology: EAACI position
    paper. Allergy. 72(6), 866–887.'
  mla: 'Jensen-Jarolim, E., et al. “AllergoOncology - the Impact of Allergy in Oncology:
    EAACI Position Paper.” <i>Allergy</i>, vol. 72, no. 6, Wiley, 2017, pp. 866–87,
    doi:<a href="https://doi.org/10.1111/all.13119">10.1111/all.13119</a>.'
  short: E. Jensen-Jarolim, H.J. Bax, R. Bianchini, M. Capron, C. Corrigan, M. Castells,
    D. Dombrowicz, T.R. Daniels-Wells, J. Singer, E. Fiebiger, S. Gatault, H.J. Gould,
    J. Janda, D.H. Josephs, P. Karagiannis, F. Levi-Schaffer, A. Meshcheryakova, D.
    Mechtcheriakova, Y. Mekori, F. Mungenast, E.A. Nigro, M.L. Penichet, F. Redegeld,
    L. Saul, J. Singer, J.F. Spicer, A.G. Siccardi, E. Spillner, M.C. Turner, E. Untersmayr,
    L. Vangelista, S.N. Karagiannis, Allergy 72 (2017) 866–887.
date_created: 2020-08-10T11:53:26Z
date_published: 2017-06-01T00:00:00Z
date_updated: 2021-01-12T08:17:39Z
day: '01'
doi: 10.1111/all.13119
extern: '1'
intvolume: '        72'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1111/all.13119
month: '06'
oa: 1
oa_version: Published Version
page: 866-887
publication: Allergy
publication_identifier:
  issn:
  - 0105-4538
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: 'AllergoOncology - the impact of allergy in oncology: EAACI position paper'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 72
year: '2017'
...
---
_id: '8237'
abstract:
- lang: eng
  text: Monoclonal antibodies find broad application as therapy for various types
    of cancer by employing multiple mechanisms of action against tumors. Manipulating
    the Fc-mediated functions of antibodies that engage immune effector cells, such
    as NK cells, represents a strategy to influence effector cell activation and to
    enhance antibody potency and potentially efficacy. We developed a novel approach
    to generate and ascertain the functional attributes of Fc mutant monoclonal antibodies.
    This entailed coupling single expression vector (pVitro1) antibody cloning, using
    polymerase incomplete primer extension (PIPE) polymerase chain reaction, together
    with simultaneous Fc region point mutagenesis and high yield transient expression
    in human mammalian cells. Employing this, we engineered wild type, low (N297Q,
    NQ), and high (S239D/I332E, DE) FcR-binding Fc mutant monoclonal antibody panels
    recognizing two cancer antigens, HER2/neu and chondroitin sulfate proteoglycan
    4. Antibodies were generated with universal mutagenic primers applicable to any
    IgG1 pVitro1 constructs, with high mutagenesis and transfection efficiency, in
    small culture volumes, at high yields and within 12 days from design to purified
    material. Antibody variants conserved their Fab-mediated recognition of target
    antigens and their direct anti-proliferative effects against cancer cells. Fc
    mutations had a significant impact on antibody interactions with Fc receptors
    (FcRs) on human NK cells, and consequently on the potency of NK cell activation,
    quantified by immune complex-mediated calcium mobilization and by antibody-dependent
    cellular cytotoxicity (ADCC) of tumor cells. This strategy for manipulation and
    testing of Fc region engagement with cognate FcRs can facilitate the design of
    antibodies with defined effector functions and potentially enhanced efficacy against
    tumor cells.
article_number: '1112'
article_processing_charge: No
article_type: original
author:
- first_name: Kristina M.
  full_name: Ilieva, Kristina M.
  last_name: Ilieva
- first_name: Judit
  full_name: Fazekas-Singer, Judit
  id: 36432834-F248-11E8-B48F-1D18A9856A87
  last_name: Fazekas-Singer
  orcid: 0000-0002-8777-3502
- first_name: Daniela Y.
  full_name: Achkova, Daniela Y.
  last_name: Achkova
- first_name: Tihomir S.
  full_name: Dodev, Tihomir S.
  last_name: Dodev
- first_name: Silvia
  full_name: Mele, Silvia
  last_name: Mele
- first_name: Silvia
  full_name: Crescioli, Silvia
  last_name: Crescioli
- first_name: Heather J.
  full_name: Bax, Heather J.
  last_name: Bax
- first_name: Anthony
  full_name: Cheung, Anthony
  last_name: Cheung
- first_name: Panagiotis
  full_name: Karagiannis, Panagiotis
  last_name: Karagiannis
- first_name: Isabel
  full_name: Correa, Isabel
  last_name: Correa
- first_name: Mariangela
  full_name: Figini, Mariangela
  last_name: Figini
- first_name: Rebecca
  full_name: Marlow, Rebecca
  last_name: Marlow
- first_name: Debra H.
  full_name: Josephs, Debra H.
  last_name: Josephs
- first_name: Andrew J.
  full_name: Beavil, Andrew J.
  last_name: Beavil
- first_name: John
  full_name: Maher, John
  last_name: Maher
- first_name: James F.
  full_name: Spicer, James F.
  last_name: Spicer
- first_name: Erika
  full_name: Jensen-Jarolim, Erika
  last_name: Jensen-Jarolim
- first_name: Andrew N.
  full_name: Tutt, Andrew N.
  last_name: Tutt
- first_name: Sophia N.
  full_name: Karagiannis, Sophia N.
  last_name: Karagiannis
citation:
  ama: Ilieva KM, Singer J, Achkova DY, et al. Functionally active Fc mutant antibodies
    recognizing cancer antigens generated rapidly at high yields. <i>Frontiers in
    Immunology</i>. 2017;8. doi:<a href="https://doi.org/10.3389/fimmu.2017.01112">10.3389/fimmu.2017.01112</a>
  apa: Ilieva, K. M., Singer, J., Achkova, D. Y., Dodev, T. S., Mele, S., Crescioli,
    S., … Karagiannis, S. N. (2017). Functionally active Fc mutant antibodies recognizing
    cancer antigens generated rapidly at high yields. <i>Frontiers in Immunology</i>.
    Frontiers. <a href="https://doi.org/10.3389/fimmu.2017.01112">https://doi.org/10.3389/fimmu.2017.01112</a>
  chicago: Ilieva, Kristina M., Judit Singer, Daniela Y. Achkova, Tihomir S. Dodev,
    Silvia Mele, Silvia Crescioli, Heather J. Bax, et al. “Functionally Active Fc
    Mutant Antibodies Recognizing Cancer Antigens Generated Rapidly at High Yields.”
    <i>Frontiers in Immunology</i>. Frontiers, 2017. <a href="https://doi.org/10.3389/fimmu.2017.01112">https://doi.org/10.3389/fimmu.2017.01112</a>.
  ieee: K. M. Ilieva <i>et al.</i>, “Functionally active Fc mutant antibodies recognizing
    cancer antigens generated rapidly at high yields,” <i>Frontiers in Immunology</i>,
    vol. 8. Frontiers, 2017.
  ista: Ilieva KM, Singer J, Achkova DY, Dodev TS, Mele S, Crescioli S, Bax HJ, Cheung
    A, Karagiannis P, Correa I, Figini M, Marlow R, Josephs DH, Beavil AJ, Maher J,
    Spicer JF, Jensen-Jarolim E, Tutt AN, Karagiannis SN. 2017. Functionally active
    Fc mutant antibodies recognizing cancer antigens generated rapidly at high yields.
    Frontiers in Immunology. 8, 1112.
  mla: Ilieva, Kristina M., et al. “Functionally Active Fc Mutant Antibodies Recognizing
    Cancer Antigens Generated Rapidly at High Yields.” <i>Frontiers in Immunology</i>,
    vol. 8, 1112, Frontiers, 2017, doi:<a href="https://doi.org/10.3389/fimmu.2017.01112">10.3389/fimmu.2017.01112</a>.
  short: K.M. Ilieva, J. Singer, D.Y. Achkova, T.S. Dodev, S. Mele, S. Crescioli,
    H.J. Bax, A. Cheung, P. Karagiannis, I. Correa, M. Figini, R. Marlow, D.H. Josephs,
    A.J. Beavil, J. Maher, J.F. Spicer, E. Jensen-Jarolim, A.N. Tutt, S.N. Karagiannis,
    Frontiers in Immunology 8 (2017).
date_created: 2020-08-10T11:53:32Z
date_published: 2017-09-11T00:00:00Z
date_updated: 2021-01-12T08:17:39Z
day: '11'
doi: 10.3389/fimmu.2017.01112
extern: '1'
intvolume: '         8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3389/fimmu.2017.01112
month: '09'
oa: 1
oa_version: Published Version
publication: Frontiers in Immunology
publication_identifier:
  issn:
  - 1664-3224
publication_status: published
publisher: Frontiers
quality_controlled: '1'
status: public
title: Functionally active Fc mutant antibodies recognizing cancer antigens generated
  rapidly at high yields
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2017'
...
---
_id: '8239'
abstract:
- lang: eng
  text: Acrolein, a highly reactive unsaturated aldehyde, is generated in large amounts
    during smoking and is best known for its genotoxic capacity. Here, we aimed to
    assess whether acrolein at concentrations relevant for smokers may also exert
    immunomodulatory effects that could be relevant in allergy or cancer. In a BALB/c
    allergy model repeated nasal exposure to acrolein abrogated allergen-specific
    antibody and cytokine formation, and led to a relative accumulation of regulatory
    T cells in the lungs. Only the acrolein-treated mice were protected from bronchial
    hyperreactivity as well as from anaphylactic reactions upon challenge with the
    specific allergen. Moreover, grafted D2F2 tumor cells grew faster and intratumoral
    Foxp3+ cell accumulation was observed in these mice compared to sham-treated controls.
    Results from reporter cell lines suggested that acrolein acts via the aryl-hydrocarbon
    receptor which could be inhibited by resveratrol and 3′-methoxy-4′-nitroflavone
    Acrolein- stimulation of human PBMCs increased Foxp3+ expression by T cells which
    could be antagonized by resveratrol. Our mouse and human data thus revealed that
    acrolein exerts systemic immunosuppression by promoting Foxp3+ regulatory cells.
    This provides a novel explanation why smokers have a lower allergy, but higher
    cancer risk.
article_number: '45067'
article_processing_charge: No
article_type: original
author:
- first_name: Franziska
  full_name: Roth-Walter, Franziska
  last_name: Roth-Walter
- first_name: Cornelia
  full_name: Bergmayr, Cornelia
  last_name: Bergmayr
- first_name: Sarah
  full_name: Meitz, Sarah
  last_name: Meitz
- first_name: Stefan
  full_name: Buchleitner, Stefan
  last_name: Buchleitner
- first_name: Caroline
  full_name: Stremnitzer, Caroline
  last_name: Stremnitzer
- first_name: Judit
  full_name: Fazekas, Judit
  id: 36432834-F248-11E8-B48F-1D18A9856A87
  last_name: Fazekas
  orcid: 0000-0002-8777-3502
- first_name: Anna
  full_name: Moskovskich, Anna
  last_name: Moskovskich
- first_name: Mario A.
  full_name: Müller, Mario A.
  last_name: Müller
- first_name: Georg A.
  full_name: Roth, Georg A.
  last_name: Roth
- first_name: Krisztina
  full_name: Manzano-Szalai, Krisztina
  last_name: Manzano-Szalai
- first_name: Zdenek
  full_name: Dvorak, Zdenek
  last_name: Dvorak
- first_name: Alina
  full_name: Neunkirchner, Alina
  last_name: Neunkirchner
- first_name: Erika
  full_name: Jensen-Jarolim, Erika
  last_name: Jensen-Jarolim
citation:
  ama: 'Roth-Walter F, Bergmayr C, Meitz S, et al. Janus-faced Acrolein prevents allergy
    but accelerates tumor growth by promoting immunoregulatory Foxp3+ cells: Mouse
    model for passive respiratory exposure. <i>Scientific Reports</i>. 2017;7. doi:<a
    href="https://doi.org/10.1038/srep45067">10.1038/srep45067</a>'
  apa: 'Roth-Walter, F., Bergmayr, C., Meitz, S., Buchleitner, S., Stremnitzer, C.,
    Singer, J., … Jensen-Jarolim, E. (2017). Janus-faced Acrolein prevents allergy
    but accelerates tumor growth by promoting immunoregulatory Foxp3+ cells: Mouse
    model for passive respiratory exposure. <i>Scientific Reports</i>. Springer Nature.
    <a href="https://doi.org/10.1038/srep45067">https://doi.org/10.1038/srep45067</a>'
  chicago: 'Roth-Walter, Franziska, Cornelia Bergmayr, Sarah Meitz, Stefan Buchleitner,
    Caroline Stremnitzer, Judit Singer, Anna Moskovskich, et al. “Janus-Faced Acrolein
    Prevents Allergy but Accelerates Tumor Growth by Promoting Immunoregulatory Foxp3+
    Cells: Mouse Model for Passive Respiratory Exposure.” <i>Scientific Reports</i>.
    Springer Nature, 2017. <a href="https://doi.org/10.1038/srep45067">https://doi.org/10.1038/srep45067</a>.'
  ieee: 'F. Roth-Walter <i>et al.</i>, “Janus-faced Acrolein prevents allergy but
    accelerates tumor growth by promoting immunoregulatory Foxp3+ cells: Mouse model
    for passive respiratory exposure,” <i>Scientific Reports</i>, vol. 7. Springer
    Nature, 2017.'
  ista: 'Roth-Walter F, Bergmayr C, Meitz S, Buchleitner S, Stremnitzer C, Singer
    J, Moskovskich A, Müller MA, Roth GA, Manzano-Szalai K, Dvorak Z, Neunkirchner
    A, Jensen-Jarolim E. 2017. Janus-faced Acrolein prevents allergy but accelerates
    tumor growth by promoting immunoregulatory Foxp3+ cells: Mouse model for passive
    respiratory exposure. Scientific Reports. 7, 45067.'
  mla: 'Roth-Walter, Franziska, et al. “Janus-Faced Acrolein Prevents Allergy but
    Accelerates Tumor Growth by Promoting Immunoregulatory Foxp3+ Cells: Mouse Model
    for Passive Respiratory Exposure.” <i>Scientific Reports</i>, vol. 7, 45067, Springer
    Nature, 2017, doi:<a href="https://doi.org/10.1038/srep45067">10.1038/srep45067</a>.'
  short: F. Roth-Walter, C. Bergmayr, S. Meitz, S. Buchleitner, C. Stremnitzer, J.
    Singer, A. Moskovskich, M.A. Müller, G.A. Roth, K. Manzano-Szalai, Z. Dvorak,
    A. Neunkirchner, E. Jensen-Jarolim, Scientific Reports 7 (2017).
date_created: 2020-08-10T11:53:46Z
date_published: 2017-03-23T00:00:00Z
date_updated: 2021-01-12T08:17:40Z
day: '23'
doi: 10.1038/srep45067
extern: '1'
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/srep45067
month: '03'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_identifier:
  issn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'Janus-faced Acrolein prevents allergy but accelerates tumor growth by promoting
  immunoregulatory Foxp3+ cells: Mouse model for passive respiratory exposure'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2017'
...
---
_id: '824'
abstract:
- lang: eng
  text: 'In shear flows at transitional Reynolds numbers, localized patches of turbulence,
    known as puffs, coexist with the laminar flow. Recently, Avila et al. (Phys. Rev.
    Lett., vol. 110, 2013, 224502) discovered two spatially localized relative periodic
    solutions for pipe flow, which appeared in a saddle-node bifurcation at low Reynolds
    number. Combining slicing methods for continuous symmetry reduction with Poincaré
    sections for the first time in a shear flow setting, we compute and visualize
    the unstable manifold of the lower-branch solution and show that it extends towards
    the neighbourhood of the upper-branch solution. Surprisingly, this connection
    even persists far above the bifurcation point and appears to mediate the first
    stage of the puff generation: amplification of streamwise localized fluctuations.
    When the state-space trajectories on the unstable manifold reach the vicinity
    of the upper branch, corresponding fluctuations expand in space and eventually
    take the usual shape of a puff.'
article_number: R1
article_processing_charge: No
author:
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Budanur NB, Hof B. Heteroclinic path to spatially localized chaos in pipe flow.
    <i>Journal of Fluid Mechanics</i>. 2017;827. doi:<a href="https://doi.org/10.1017/jfm.2017.516">10.1017/jfm.2017.516</a>
  apa: Budanur, N. B., &#38; Hof, B. (2017). Heteroclinic path to spatially localized
    chaos in pipe flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press.
    <a href="https://doi.org/10.1017/jfm.2017.516">https://doi.org/10.1017/jfm.2017.516</a>
  chicago: Budanur, Nazmi B, and Björn Hof. “Heteroclinic Path to Spatially Localized
    Chaos in Pipe Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press,
    2017. <a href="https://doi.org/10.1017/jfm.2017.516">https://doi.org/10.1017/jfm.2017.516</a>.
  ieee: N. B. Budanur and B. Hof, “Heteroclinic path to spatially localized chaos
    in pipe flow,” <i>Journal of Fluid Mechanics</i>, vol. 827. Cambridge University
    Press, 2017.
  ista: Budanur NB, Hof B. 2017. Heteroclinic path to spatially localized chaos in
    pipe flow. Journal of Fluid Mechanics. 827, R1.
  mla: Budanur, Nazmi B., and Björn Hof. “Heteroclinic Path to Spatially Localized
    Chaos in Pipe Flow.” <i>Journal of Fluid Mechanics</i>, vol. 827, R1, Cambridge
    University Press, 2017, doi:<a href="https://doi.org/10.1017/jfm.2017.516">10.1017/jfm.2017.516</a>.
  short: N.B. Budanur, B. Hof, Journal of Fluid Mechanics 827 (2017).
date_created: 2018-12-11T11:48:42Z
date_published: 2017-08-18T00:00:00Z
date_updated: 2023-09-26T16:17:43Z
day: '18'
department:
- _id: BjHo
doi: 10.1017/jfm.2017.516
external_id:
  isi:
  - '000408326300001'
intvolume: '       827'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1703.10484
month: '08'
oa: 1
oa_version: Submitted Version
publication: Journal of Fluid Mechanics
publication_identifier:
  issn:
  - '00221120'
publication_status: published
publisher: Cambridge University Press
publist_id: '6824'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Heteroclinic path to spatially localized chaos in pipe flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 827
year: '2017'
...
---
_id: '8240'
abstract:
- lang: eng
  text: "Background/Aim: Cancer cell lines are indispensible surrogate models in cancer
    research, as they can be used off-the-shelf, expanded to the desired extent, easily
    modified and exchanged between research groups for affirmation, reproduction or
    follow-up experiments.\r\nAs malignant cells are prone to genomic instability,
    phenotypical changes may occur after certain passages in culture. Thus, cell lines
    have to be regularly authenticated to ensure data quality. In between experiments
    these cell lines are often stored in liquid nitrogen for extended time periods.\r\nAlthough
    freezing of cells is a necessary evil, little research is performed on how long-term
    storage affects cancer cell lines. Therefore, this study investigated the effects
    of a 28-year long liquid nitrogen storage period on BT474 cells with regard to
    phenotypical changes, differences in cell-surface receptor expression as well
    as cytokine and gene expressional variations.\r\nMethods: Two batches of BT474
    cells, one frozen in 1986, the other directly purchased from ATCC were investigated
    by light microscopy, cell growth analysis, flow cytometry and cytokine as well
    as whole-transcriptome expression profiling.\r\nResults: The cell lines were morphologically
    indifferent and showed similar growth rates and similar cell-surface receptor
    expression. Transcriptome analysis revealed significant differences in only 26
    of 40,716 investigated RefSeq transcripts with 4 of them being up-regulated and
    22 down-regulated.\r\nConclusion: This study demonstrates that even after very
    long periods of storage in liquid nitrogen, cancer cell lines display only minimal
    changes in their gene expression profiles. However, also such minor changes should
    be carefully assessed before continuation of experiments, especially if phenotypic
    alterations can be additionally observed."
article_processing_charge: No
article_type: original
author:
- first_name: Judit
  full_name: Fazekas, Judit
  id: 36432834-F248-11E8-B48F-1D18A9856A87
  last_name: Fazekas
  orcid: 0000-0002-8777-3502
- first_name: Thomas W.
  full_name: Grunt, Thomas W.
  last_name: Grunt
- first_name: Erika
  full_name: Jensen-Jarolim, Erika
  last_name: Jensen-Jarolim
- first_name: Josef
  full_name: Singer, Josef
  last_name: Singer
citation:
  ama: Singer J, Grunt TW, Jensen-Jarolim E, Singer J. Long term storage in liquid
    nitrogen leads to only minor phenotypic and gene expression changes in the mammary
    carcinoma model cell line BT474. <i>Oncotarget</i>. 2017;8:35076-35087. doi:<a
    href="https://doi.org/10.18632/oncotarget.16623">10.18632/oncotarget.16623</a>
  apa: Singer, J., Grunt, T. W., Jensen-Jarolim, E., &#38; Singer, J. (2017). Long
    term storage in liquid nitrogen leads to only minor phenotypic and gene expression
    changes in the mammary carcinoma model cell line BT474. <i>Oncotarget</i>. Impact
    Journals. <a href="https://doi.org/10.18632/oncotarget.16623">https://doi.org/10.18632/oncotarget.16623</a>
  chicago: Singer, Judit, Thomas W. Grunt, Erika Jensen-Jarolim, and Josef Singer.
    “Long Term Storage in Liquid Nitrogen Leads to Only Minor Phenotypic and Gene
    Expression Changes in the Mammary Carcinoma Model Cell Line BT474.” <i>Oncotarget</i>.
    Impact Journals, 2017. <a href="https://doi.org/10.18632/oncotarget.16623">https://doi.org/10.18632/oncotarget.16623</a>.
  ieee: J. Singer, T. W. Grunt, E. Jensen-Jarolim, and J. Singer, “Long term storage
    in liquid nitrogen leads to only minor phenotypic and gene expression changes
    in the mammary carcinoma model cell line BT474,” <i>Oncotarget</i>, vol. 8. Impact
    Journals, pp. 35076–35087, 2017.
  ista: Singer J, Grunt TW, Jensen-Jarolim E, Singer J. 2017. Long term storage in
    liquid nitrogen leads to only minor phenotypic and gene expression changes in
    the mammary carcinoma model cell line BT474. Oncotarget. 8, 35076–35087.
  mla: Singer, Judit, et al. “Long Term Storage in Liquid Nitrogen Leads to Only Minor
    Phenotypic and Gene Expression Changes in the Mammary Carcinoma Model Cell Line
    BT474.” <i>Oncotarget</i>, vol. 8, Impact Journals, 2017, pp. 35076–87, doi:<a
    href="https://doi.org/10.18632/oncotarget.16623">10.18632/oncotarget.16623</a>.
  short: J. Singer, T.W. Grunt, E. Jensen-Jarolim, J. Singer, Oncotarget 8 (2017)
    35076–35087.
date_created: 2020-08-10T11:53:53Z
date_published: 2017-03-28T00:00:00Z
date_updated: 2021-01-12T08:17:41Z
day: '28'
doi: 10.18632/oncotarget.16623
extern: '1'
intvolume: '         8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.18632/oncotarget.16623
month: '03'
oa: 1
oa_version: Published Version
page: 35076-35087
publication: Oncotarget
publication_identifier:
  issn:
  - 1949-2553
publication_status: published
publisher: Impact Journals
quality_controlled: '1'
status: public
title: Long term storage in liquid nitrogen leads to only minor phenotypic and gene
  expression changes in the mammary carcinoma model cell line BT474
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2017'
...
---
_id: '825'
abstract:
- lang: eng
  text: What data is needed about data? Describing the process to answer this question
    for the institutional data repository IST DataRep.
author:
- first_name: Barbara
  full_name: Petritsch, Barbara
  id: 406048EC-F248-11E8-B48F-1D18A9856A87
  last_name: Petritsch
  orcid: 0000-0003-2724-4614
citation:
  ama: Petritsch B. Metadata for research data in practice. <i>Mitteilungen der Vereinigung
    Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. 2017;70(2):200-207.
    doi:<a href="https://doi.org/10.31263/voebm.v70i2.1678">10.31263/voebm.v70i2.1678</a>
  apa: Petritsch, B. (2017). Metadata for research data in practice. <i>Mitteilungen
    Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. VÖB.
    <a href="https://doi.org/10.31263/voebm.v70i2.1678">https://doi.org/10.31263/voebm.v70i2.1678</a>
  chicago: Petritsch, Barbara. “Metadata for Research Data in Practice.” <i>Mitteilungen
    Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. VÖB,
    2017. <a href="https://doi.org/10.31263/voebm.v70i2.1678">https://doi.org/10.31263/voebm.v70i2.1678</a>.
  ieee: B. Petritsch, “Metadata for research data in practice,” <i>Mitteilungen der
    Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>, vol. 70,
    no. 2. VÖB, pp. 200–207, 2017.
  ista: Petritsch B. 2017. Metadata for research data in practice. Mitteilungen der
    Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare. 70(2), 200–207.
  mla: Petritsch, Barbara. “Metadata for Research Data in Practice.” <i>Mitteilungen
    Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>, vol.
    70, no. 2, VÖB, 2017, pp. 200–07, doi:<a href="https://doi.org/10.31263/voebm.v70i2.1678">10.31263/voebm.v70i2.1678</a>.
  short: B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen
    &#38; Bibliothekare 70 (2017) 200–207.
date_created: 2018-12-11T11:48:42Z
date_published: 2017-08-01T00:00:00Z
date_updated: 2021-01-12T08:17:44Z
day: '01'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.31263/voebm.v70i2.1678
file:
- access_level: open_access
  checksum: 7c4544d07efa2c2add8612b489abb4e2
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-18T13:32:17Z
  date_updated: 2020-07-14T12:48:11Z
  file_id: '5850'
  file_name: 2017_VOEB_Petritsch.pdf
  file_size: 7843975
  relation: main_file
file_date_updated: 2020-07-14T12:48:11Z
has_accepted_license: '1'
intvolume: '        70'
issue: '2'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 200 - 207
publication: Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare
publication_identifier:
  issn:
  - '10222588'
publication_status: published
publisher: VÖB
publist_id: '6823'
scopus_import: 1
status: public
title: Metadata for research data in practice
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 70
year: '2017'
...
---
_id: '8299'
abstract:
- lang: eng
  text: 'Permissionless blockchain-based cryptocurrencies commonly use proof-of-work
    (PoW) or proof-of-stake (PoS) to ensure their security, e.g. to prevent double
    spending attacks. However, both approaches have disadvantages: PoW leads to massive
    amounts of wasted electricity and re-centralization, whereas major stakeholders
    in PoS might be able to create a monopoly. In this work, we propose proof-of-personhood
    (PoP), a mechanism that binds physical entities to virtual identities in a way
    that enables accountability while preserving anonymity. Afterwards we introduce
    PoPCoin, a new cryptocurrency, whose consensus mechanism leverages PoP to eliminate
    the dis-advantages of PoW and PoS while ensuring security. PoPCoin leads to a
    continuously fair and democratic wealth creation process which paves the way for
    an experimental basic income infrastructure.'
article_number: '7966966'
article_processing_charge: No
author:
- first_name: Maria
  full_name: Borge, Maria
  last_name: Borge
- first_name: Eleftherios
  full_name: Kokoris Kogias, Eleftherios
  id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
  last_name: Kokoris Kogias
- first_name: Philipp
  full_name: Jovanovic, Philipp
  last_name: Jovanovic
- first_name: Linus
  full_name: Gasser, Linus
  last_name: Gasser
- first_name: Nicolas
  full_name: Gailly, Nicolas
  last_name: Gailly
- first_name: Bryan
  full_name: Ford, Bryan
  last_name: Ford
citation:
  ama: 'Borge M, Kokoris Kogias E, Jovanovic P, Gasser L, Gailly N, Ford B. Proof-of-personhood:
    Redemocratizing permissionless cryptocurrencies. In: <i>2017 IEEE European Symposium
    on Security and Privacy Workshops</i>. IEEE; 2017. doi:<a href="https://doi.org/10.1109/eurospw.2017.46">10.1109/eurospw.2017.46</a>'
  apa: 'Borge, M., Kokoris Kogias, E., Jovanovic, P., Gasser, L., Gailly, N., &#38;
    Ford, B. (2017). Proof-of-personhood: Redemocratizing permissionless cryptocurrencies.
    In <i>2017 IEEE European Symposium on Security and Privacy Workshops</i>. Paris,
    France: IEEE. <a href="https://doi.org/10.1109/eurospw.2017.46">https://doi.org/10.1109/eurospw.2017.46</a>'
  chicago: 'Borge, Maria, Eleftherios Kokoris Kogias, Philipp Jovanovic, Linus Gasser,
    Nicolas Gailly, and Bryan Ford. “Proof-of-Personhood: Redemocratizing Permissionless
    Cryptocurrencies.” In <i>2017 IEEE European Symposium on Security and Privacy
    Workshops</i>. IEEE, 2017. <a href="https://doi.org/10.1109/eurospw.2017.46">https://doi.org/10.1109/eurospw.2017.46</a>.'
  ieee: 'M. Borge, E. Kokoris Kogias, P. Jovanovic, L. Gasser, N. Gailly, and B. Ford,
    “Proof-of-personhood: Redemocratizing permissionless cryptocurrencies,” in <i>2017
    IEEE European Symposium on Security and Privacy Workshops</i>, Paris, France,
    2017.'
  ista: 'Borge M, Kokoris Kogias E, Jovanovic P, Gasser L, Gailly N, Ford B. 2017.
    Proof-of-personhood: Redemocratizing permissionless cryptocurrencies. 2017 IEEE
    European Symposium on Security and Privacy Workshops. EuroS&#38;PW: European Symposium
    on Security and Privacy Workshops, 7966966.'
  mla: 'Borge, Maria, et al. “Proof-of-Personhood: Redemocratizing Permissionless
    Cryptocurrencies.” <i>2017 IEEE European Symposium on Security and Privacy Workshops</i>,
    7966966, IEEE, 2017, doi:<a href="https://doi.org/10.1109/eurospw.2017.46">10.1109/eurospw.2017.46</a>.'
  short: M. Borge, E. Kokoris Kogias, P. Jovanovic, L. Gasser, N. Gailly, B. Ford,
    in:, 2017 IEEE European Symposium on Security and Privacy Workshops, IEEE, 2017.
conference:
  end_date: 2017-04-28
  location: Paris, France
  name: 'EuroS&PW: European Symposium on Security and Privacy Workshops'
  start_date: 2017-04-26
date_created: 2020-08-26T11:48:11Z
date_published: 2017-06-30T00:00:00Z
date_updated: 2021-01-12T08:17:57Z
day: '30'
doi: 10.1109/eurospw.2017.46
extern: '1'
language:
- iso: eng
month: '06'
oa_version: None
publication: 2017 IEEE European Symposium on Security and Privacy Workshops
publication_identifier:
  eisbn:
  - '9781538622445'
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'Proof-of-personhood: Redemocratizing permissionless cryptocurrencies'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '8301'
abstract:
- lang: eng
  text: Software-update mechanisms are critical to the security of modern systems,
    but their typically centralized design presents a lucrative and frequently attacked
    target. In this work, we propose CHAINIAC, a decentralized software-update framework
    that eliminates single points of failure, enforces transparency, and provides
    efficient verifiability of integrity and authenticity for software-release processes.
    Independent witness servers collectively verify conformance of software updates
    to release policies, build verifiers validate the source-to-binary correspondence,
    and a tamper-proof release log stores collectively signed updates, thus ensuring
    that no release is accepted by clients before being widely disclosed and validated.
    The release log embodies a skipchain, a novel data structure, enabling arbitrarily
    out-of-date clients to efficiently validate updates and signing keys. Evaluation
    of our CHAINIAC prototype on reproducible Debian packages shows that the automated
    update process takes the average of 5 minutes per release for individual packages,
    and only 20 seconds for the aggregate timeline. We further evaluate the framework
    using real-world data from the PyPI package repository and show that it offers
    clients security comparable to verifying every single update themselves while
    consuming only one-fifth of the bandwidth and having a minimal computational overhead.
article_processing_charge: No
author:
- first_name: Kirill
  full_name: Nikitin, Kirill
  last_name: Nikitin
- first_name: Eleftherios
  full_name: Kokoris Kogias, Eleftherios
  id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
  last_name: Kokoris Kogias
- first_name: Philipp
  full_name: Jovanovic, Philipp
  last_name: Jovanovic
- first_name: Linus
  full_name: Gasser, Linus
  last_name: Gasser
- first_name: Nicolas
  full_name: Gailly, Nicolas
  last_name: Gailly
- first_name: Ismail
  full_name: Khoffi, Ismail
  last_name: Khoffi
- first_name: Justin
  full_name: Cappos, Justin
  last_name: Cappos
- first_name: Bryan
  full_name: Ford, Bryan
  last_name: Ford
citation:
  ama: 'Nikitin K, Kokoris Kogias E, Jovanovic P, et al. CHAINIAC: Proactive software-update
    transparency via collectively signed skipchains and verified builds. In: <i>Proceedings
    of the 26th USENIX Conference on Security Symposium</i>. USENIX Association; 2017:1271–1287.'
  apa: 'Nikitin, K., Kokoris Kogias, E., Jovanovic, P., Gasser, L., Gailly, N., Khoffi,
    I., … Ford, B. (2017). CHAINIAC: Proactive software-update transparency via collectively
    signed skipchains and verified builds. In <i>Proceedings of the 26th USENIX Conference
    on Security Symposium</i> (pp. 1271–1287). Vancouver, Canada: USENIX Association.'
  chicago: 'Nikitin, Kirill, Eleftherios Kokoris Kogias, Philipp Jovanovic, Linus
    Gasser, Nicolas Gailly, Ismail Khoffi, Justin Cappos, and Bryan Ford. “CHAINIAC:
    Proactive Software-Update Transparency via Collectively Signed Skipchains and
    Verified Builds.” In <i>Proceedings of the 26th USENIX Conference on Security
    Symposium</i>, 1271–1287. USENIX Association, 2017.'
  ieee: 'K. Nikitin <i>et al.</i>, “CHAINIAC: Proactive software-update transparency
    via collectively signed skipchains and verified builds,” in <i>Proceedings of
    the 26th USENIX Conference on Security Symposium</i>, Vancouver, Canada, 2017,
    pp. 1271–1287.'
  ista: 'Nikitin K, Kokoris Kogias E, Jovanovic P, Gasser L, Gailly N, Khoffi I, Cappos
    J, Ford B. 2017. CHAINIAC: Proactive software-update transparency via collectively
    signed skipchains and verified builds. Proceedings of the 26th USENIX Conference
    on Security Symposium. SEC: Security Symposium, 1271–1287.'
  mla: 'Nikitin, Kirill, et al. “CHAINIAC: Proactive Software-Update Transparency
    via Collectively Signed Skipchains and Verified Builds.” <i>Proceedings of the
    26th USENIX Conference on Security Symposium</i>, USENIX Association, 2017, pp.
    1271–1287.'
  short: K. Nikitin, E. Kokoris Kogias, P. Jovanovic, L. Gasser, N. Gailly, I. Khoffi,
    J. Cappos, B. Ford, in:, Proceedings of the 26th USENIX Conference on Security
    Symposium, USENIX Association, 2017, pp. 1271–1287.
conference:
  end_date: 2017-08-18
  location: Vancouver, Canada
  name: 'SEC: Security Symposium'
  start_date: 2017-08-16
date_created: 2020-08-26T12:04:44Z
date_published: 2017-09-01T00:00:00Z
date_updated: 2021-01-12T08:18:00Z
day: '01'
extern: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.usenix.org/system/files/conference/usenixsecurity17/sec17-nikitin.pdf
month: '09'
oa: 1
oa_version: Published Version
page: 1271–1287
publication: Proceedings of the 26th USENIX Conference on Security Symposium
publication_identifier:
  isbn:
  - '9781931971409'
publication_status: published
publisher: USENIX Association
quality_controlled: '1'
status: public
title: 'CHAINIAC: Proactive software-update transparency via collectively signed skipchains
  and verified builds'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '8306'
abstract:
- lang: eng
  text: Bias-resistant public randomness is a critical component in many (distributed)
    protocols. Generating public randomness is hard, however, because active adversaries
    may behave dishonestly to bias public random choices toward their advantage. Existing
    solutions do not scale to hundreds or thousands of participants, as is needed
    in many decentralized systems. We propose two large-scale distributed protocols,
    RandHound and RandHerd, which provide publicly-verifiable, unpredictable, and
    unbiasable randomness against Byzantine adversaries. RandHound relies on an untrusted
    client to divide a set of randomness servers into groups for scalability, and
    it depends on the pigeonhole principle to ensure output integrity, even for non-random,
    adversarial group choices. RandHerd implements an efficient, decentralized randomness
    beacon. RandHerd is structurally similar to a BFT protocol, but uses RandHound
    in a one-time setup to arrange participants into verifiably unbiased random secret-sharing
    groups, which then repeatedly produce random output at predefined intervals. Our
    prototype demonstrates that RandHound and RandHerd achieve good performance across
    hundreds of participants while retaining a low failure probability by properly
    selecting protocol parameters, such as a group size and secret-sharing threshold.
    For example, when sharding 512 nodes into groups of 32, our experiments show that
    RandHound can produce fresh random output after 240 seconds. RandHerd, after a
    setup phase of 260 seconds, is able to generate fresh random output in intervals
    of approximately 6 seconds. For this configuration, both protocols operate at
    a failure probability of at most 0.08% against a Byzantine adversary.
article_processing_charge: No
author:
- first_name: E.
  full_name: Syta, E.
  last_name: Syta
- first_name: P.
  full_name: Jovanovic, P.
  last_name: Jovanovic
- first_name: Eleftherios
  full_name: Kokoris Kogias, Eleftherios
  id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
  last_name: Kokoris Kogias
- first_name: N.
  full_name: Gailly, N.
  last_name: Gailly
- first_name: L.
  full_name: Gasser, L.
  last_name: Gasser
- first_name: I.
  full_name: Khoffi, I.
  last_name: Khoffi
- first_name: M. J.
  full_name: Fischer, M. J.
  last_name: Fischer
- first_name: B.
  full_name: Ford, B.
  last_name: Ford
citation:
  ama: 'Syta E, Jovanovic P, Kokoris Kogias E, et al. Scalable bias-resistant distributed
    randomness. In: <i>2017 IEEE Symposium on Security and Privacy</i>. IEEE; 2017:444-460.
    doi:<a href="https://doi.org/10.1109/SP.2017.45">10.1109/SP.2017.45</a>'
  apa: 'Syta, E., Jovanovic, P., Kokoris Kogias, E., Gailly, N., Gasser, L., Khoffi,
    I., … Ford, B. (2017). Scalable bias-resistant distributed randomness. In <i>2017
    IEEE Symposium on Security and Privacy</i> (pp. 444–460). San Jose, CA, United
    States: IEEE. <a href="https://doi.org/10.1109/SP.2017.45">https://doi.org/10.1109/SP.2017.45</a>'
  chicago: Syta, E., P. Jovanovic, Eleftherios Kokoris Kogias, N. Gailly, L. Gasser,
    I. Khoffi, M. J. Fischer, and B. Ford. “Scalable Bias-Resistant Distributed Randomness.”
    In <i>2017 IEEE Symposium on Security and Privacy</i>, 444–60. IEEE, 2017. <a
    href="https://doi.org/10.1109/SP.2017.45">https://doi.org/10.1109/SP.2017.45</a>.
  ieee: E. Syta <i>et al.</i>, “Scalable bias-resistant distributed randomness,” in
    <i>2017 IEEE Symposium on Security and Privacy</i>, San Jose, CA, United States,
    2017, pp. 444–460.
  ista: 'Syta E, Jovanovic P, Kokoris Kogias E, Gailly N, Gasser L, Khoffi I, Fischer
    MJ, Ford B. 2017. Scalable bias-resistant distributed randomness. 2017 IEEE Symposium
    on Security and Privacy. SP: Symposium on Security and Privacy, 444–460.'
  mla: Syta, E., et al. “Scalable Bias-Resistant Distributed Randomness.” <i>2017
    IEEE Symposium on Security and Privacy</i>, IEEE, 2017, pp. 444–60, doi:<a href="https://doi.org/10.1109/SP.2017.45">10.1109/SP.2017.45</a>.
  short: E. Syta, P. Jovanovic, E. Kokoris Kogias, N. Gailly, L. Gasser, I. Khoffi,
    M.J. Fischer, B. Ford, in:, 2017 IEEE Symposium on Security and Privacy, IEEE,
    2017, pp. 444–460.
conference:
  end_date: 2017-05-26
  location: San Jose, CA, United States
  name: 'SP: Symposium on Security and Privacy'
  start_date: 2017-05-22
date_created: 2020-08-26T12:26:08Z
date_published: 2017-06-01T00:00:00Z
date_updated: 2021-01-12T08:18:02Z
day: '01'
doi: 10.1109/SP.2017.45
extern: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2016/1067
month: '06'
oa: 1
oa_version: Preprint
page: 444-460
publication: 2017 IEEE Symposium on Security and Privacy
publication_identifier:
  isbn:
  - '9781509055340'
  issn:
  - 2375-1207
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: Scalable bias-resistant distributed randomness
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '833'
abstract:
- lang: eng
  text: We present an efficient algorithm to compute Euler characteristic curves of
    gray scale images of arbitrary dimension. In various applications the Euler characteristic
    curve is used as a descriptor of an image. Our algorithm is the first streaming
    algorithm for Euler characteristic curves. The usage of streaming removes the
    necessity to store the entire image in RAM. Experiments show that our implementation
    handles terabyte scale images on commodity hardware. Due to lock-free parallelism,
    it scales well with the number of processor cores. Additionally, we put the concept
    of the Euler characteristic curve in the wider context of computational topology.
    In particular, we explain the connection with persistence diagrams.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Teresa
  full_name: Heiss, Teresa
  id: 4879BB4E-F248-11E8-B48F-1D18A9856A87
  last_name: Heiss
  orcid: 0000-0002-1780-2689
- first_name: Hubert
  full_name: Wagner, Hubert
  id: 379CA8B8-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
citation:
  ama: 'Heiss T, Wagner H. Streaming algorithm for Euler characteristic curves of
    multidimensional images. In: Felsberg M, Heyden A, Krüger N, eds. Vol 10424. Springer;
    2017:397-409. doi:<a href="https://doi.org/10.1007/978-3-319-64689-3_32">10.1007/978-3-319-64689-3_32</a>'
  apa: 'Heiss, T., &#38; Wagner, H. (2017). Streaming algorithm for Euler characteristic
    curves of multidimensional images. In M. Felsberg, A. Heyden, &#38; N. Krüger
    (Eds.) (Vol. 10424, pp. 397–409). Presented at the CAIP: Computer Analysis of
    Images and Patterns, Ystad, Sweden: Springer. <a href="https://doi.org/10.1007/978-3-319-64689-3_32">https://doi.org/10.1007/978-3-319-64689-3_32</a>'
  chicago: Heiss, Teresa, and Hubert Wagner. “Streaming Algorithm for Euler Characteristic
    Curves of Multidimensional Images.” edited by Michael Felsberg, Anders Heyden,
    and Norbert Krüger, 10424:397–409. Springer, 2017. <a href="https://doi.org/10.1007/978-3-319-64689-3_32">https://doi.org/10.1007/978-3-319-64689-3_32</a>.
  ieee: 'T. Heiss and H. Wagner, “Streaming algorithm for Euler characteristic curves
    of multidimensional images,” presented at the CAIP: Computer Analysis of Images
    and Patterns, Ystad, Sweden, 2017, vol. 10424, pp. 397–409.'
  ista: 'Heiss T, Wagner H. 2017. Streaming algorithm for Euler characteristic curves
    of multidimensional images. CAIP: Computer Analysis of Images and Patterns, LNCS,
    vol. 10424, 397–409.'
  mla: Heiss, Teresa, and Hubert Wagner. <i>Streaming Algorithm for Euler Characteristic
    Curves of Multidimensional Images</i>. Edited by Michael Felsberg et al., vol.
    10424, Springer, 2017, pp. 397–409, doi:<a href="https://doi.org/10.1007/978-3-319-64689-3_32">10.1007/978-3-319-64689-3_32</a>.
  short: T. Heiss, H. Wagner, in:, M. Felsberg, A. Heyden, N. Krüger (Eds.), Springer,
    2017, pp. 397–409.
conference:
  end_date: 2017-08-24
  location: Ystad, Sweden
  name: 'CAIP: Computer Analysis of Images and Patterns'
  start_date: 2017-08-22
date_created: 2018-12-11T11:48:45Z
date_published: 2017-07-28T00:00:00Z
date_updated: 2023-09-26T16:10:03Z
day: '28'
department:
- _id: HeEd
doi: 10.1007/978-3-319-64689-3_32
editor:
- first_name: Michael
  full_name: Felsberg, Michael
  last_name: Felsberg
- first_name: Anders
  full_name: Heyden, Anders
  last_name: Heyden
- first_name: Norbert
  full_name: Krüger, Norbert
  last_name: Krüger
external_id:
  isi:
  - '000432085900032'
intvolume: '     10424'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1705.02045
month: '07'
oa: 1
oa_version: Submitted Version
page: 397 - 409
publication_identifier:
  issn:
  - '03029743'
publication_status: published
publisher: Springer
publist_id: '6815'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Streaming algorithm for Euler characteristic curves of multidimensional images
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10424
year: '2017'
...
---
_id: '834'
abstract:
- lang: eng
  text: 'Thermal and many-body localized phases are separated by a dynamical phase
    transition of a new kind. We analyze the distribution of off-diagonal matrix elements
    of local operators across this transition in two different models of disordered
    spin chains. We show that the behavior of matrix elements can be used to characterize
    the breakdown of thermalization and to extract the many-body Thouless energy.
    We find that upon increasing the disorder strength the system enters a critical
    region around the many-body localization transition. The properties of the system
    in this region are: (i) the Thouless energy becomes smaller than the level spacing,
    (ii) the matrix elements show critical dependence on the energy difference, and
    (iii) the matrix elements, viewed as amplitudes of a fictitious wave function,
    exhibit strong multifractality. This critical region decreases with the system
    size, which we interpret as evidence for a diverging correlation length at the
    many-body localization transition. Our findings show that the correlation length
    becomes larger than the accessible system sizes in a broad range of disorder strength
    values and shed light on the critical behavior near the many-body localization
    transition.'
acknowledgement: We   acknowledge   useful   discussions with V. Kravtsov, T. Grover,
  and R. Vasseur.  M.S. was supported by Gordon and Betty Moore Foundation’s EPiQS
  Initiative through Grant GBMF4307.  M.S. and D.A.  acknowledge  hospitality  of  KITP,  where  parts  of
  this work were completed (supported in part by the National Science Foundation under
  Grant No. NSF PHY11-25915)
article_number: '104201'
article_processing_charge: No
author:
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Papic
  full_name: Zlatko, Papic
  last_name: Zlatko
- first_name: Dmitry
  full_name: Abanin, Dmitry
  last_name: Abanin
citation:
  ama: Serbyn M, Zlatko P, Abanin D. Thouless energy and multifractality across the
    many-body localization transition. <i>Physical Review B - Condensed Matter and
    Materials Physics</i>. 2017;96(10). doi:<a href="https://doi.org/10.1103/PhysRevB.96.104201">10.1103/PhysRevB.96.104201</a>
  apa: Serbyn, M., Zlatko, P., &#38; Abanin, D. (2017). Thouless energy and multifractality
    across the many-body localization transition. <i>Physical Review B - Condensed
    Matter and Materials Physics</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.96.104201">https://doi.org/10.1103/PhysRevB.96.104201</a>
  chicago: Serbyn, Maksym, Papic Zlatko, and Dmitry Abanin. “Thouless Energy and Multifractality
    across the Many-Body Localization Transition.” <i>Physical Review B - Condensed
    Matter and Materials Physics</i>. American Physical Society, 2017. <a href="https://doi.org/10.1103/PhysRevB.96.104201">https://doi.org/10.1103/PhysRevB.96.104201</a>.
  ieee: M. Serbyn, P. Zlatko, and D. Abanin, “Thouless energy and multifractality
    across the many-body localization transition,” <i>Physical Review B - Condensed
    Matter and Materials Physics</i>, vol. 96, no. 10. American Physical Society,
    2017.
  ista: Serbyn M, Zlatko P, Abanin D. 2017. Thouless energy and multifractality across
    the many-body localization transition. Physical Review B - Condensed Matter and
    Materials Physics. 96(10), 104201.
  mla: Serbyn, Maksym, et al. “Thouless Energy and Multifractality across the Many-Body
    Localization Transition.” <i>Physical Review B - Condensed Matter and Materials
    Physics</i>, vol. 96, no. 10, 104201, American Physical Society, 2017, doi:<a
    href="https://doi.org/10.1103/PhysRevB.96.104201">10.1103/PhysRevB.96.104201</a>.
  short: M. Serbyn, P. Zlatko, D. Abanin, Physical Review B - Condensed Matter and
    Materials Physics 96 (2017).
date_created: 2018-12-11T11:48:45Z
date_published: 2017-09-06T00:00:00Z
date_updated: 2023-09-26T15:51:54Z
day: '06'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.96.104201
external_id:
  isi:
  - '000409429300004'
intvolume: '        96'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1610.02389
month: '09'
oa: 1
oa_version: Submitted Version
publication: Physical Review B - Condensed Matter and Materials Physics
publication_identifier:
  issn:
  - '24699950'
publication_status: published
publisher: American Physical Society
publist_id: '6814'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Thouless energy and multifractality across the many-body localization transition
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 96
year: '2017'
...
---
_id: '835'
abstract:
- lang: eng
  text: An outstanding question in animal development, tissue homeostasis and disease
    is how cell populations adapt to sensory inputs. During Drosophila larval development,
    hematopoietic sites are in direct contact with sensory neuron clusters of the
    peripheral nervous system (PNS), and blood cells (hemocytes) require the PNS for
    their survival and recruitment to these microenvironments, known as Hematopoietic
    Pockets. Here we report that Activin-β, a TGF-β family ligand, is expressed by
    sensory neurons of the PNS and regulates the proliferation and adhesion of hemocytes.
    These hemocyte responses depend on PNS activity, as shown by agonist treatment
    and transient silencing of sensory neurons. Activin-β has a key role in this regulation,
    which is apparent from reporter expression and mutant analyses. This mechanism
    of local sensory neurons controlling blood cell adaptation invites evolutionary
    parallels with vertebrate hematopoietic progenitors and the independent myeloid
    system of tissue macrophages, whose regulation by local microenvironments remain
    undefined.
article_number: '15990'
article_processing_charge: No
author:
- first_name: Kalpana
  full_name: Makhijani, Kalpana
  last_name: Makhijani
- first_name: Brandy
  full_name: Alexander, Brandy
  last_name: Alexander
- first_name: Deepti
  full_name: Rao, Deepti
  last_name: Rao
- first_name: Sophia
  full_name: Petraki, Sophia
  last_name: Petraki
- first_name: Leire
  full_name: Herboso, Leire
  last_name: Herboso
- first_name: Katelyn
  full_name: Kukar, Katelyn
  last_name: Kukar
- first_name: Itrat
  full_name: Batool, Itrat
  last_name: Batool
- first_name: Stephanie
  full_name: Wachner, Stephanie
  id: 2A95E7B0-F248-11E8-B48F-1D18A9856A87
  last_name: Wachner
- first_name: Katrina
  full_name: Gold, Katrina
  last_name: Gold
- first_name: Corinna
  full_name: Wong, Corinna
  last_name: Wong
- first_name: Michael
  full_name: O'Connor, Michael
  last_name: O'Connor
- first_name: Katja
  full_name: Brückner, Katja
  last_name: Brückner
citation:
  ama: Makhijani K, Alexander B, Rao D, et al. Regulation of Drosophila hematopoietic
    sites by Activin-β from active sensory neurons. <i>Nature Communications</i>.
    2017;8. doi:<a href="https://doi.org/10.1038/ncomms15990">10.1038/ncomms15990</a>
  apa: Makhijani, K., Alexander, B., Rao, D., Petraki, S., Herboso, L., Kukar, K.,
    … Brückner, K. (2017). Regulation of Drosophila hematopoietic sites by Activin-β
    from active sensory neurons. <i>Nature Communications</i>. Nature Publishing Group.
    <a href="https://doi.org/10.1038/ncomms15990">https://doi.org/10.1038/ncomms15990</a>
  chicago: Makhijani, Kalpana, Brandy Alexander, Deepti Rao, Sophia Petraki, Leire
    Herboso, Katelyn Kukar, Itrat Batool, et al. “Regulation of Drosophila Hematopoietic
    Sites by Activin-β from Active Sensory Neurons.” <i>Nature Communications</i>.
    Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/ncomms15990">https://doi.org/10.1038/ncomms15990</a>.
  ieee: K. Makhijani <i>et al.</i>, “Regulation of Drosophila hematopoietic sites
    by Activin-β from active sensory neurons,” <i>Nature Communications</i>, vol.
    8. Nature Publishing Group, 2017.
  ista: Makhijani K, Alexander B, Rao D, Petraki S, Herboso L, Kukar K, Batool I,
    Wachner S, Gold K, Wong C, O’Connor M, Brückner K. 2017. Regulation of Drosophila
    hematopoietic sites by Activin-β from active sensory neurons. Nature Communications.
    8, 15990.
  mla: Makhijani, Kalpana, et al. “Regulation of Drosophila Hematopoietic Sites by
    Activin-β from Active Sensory Neurons.” <i>Nature Communications</i>, vol. 8,
    15990, Nature Publishing Group, 2017, doi:<a href="https://doi.org/10.1038/ncomms15990">10.1038/ncomms15990</a>.
  short: K. Makhijani, B. Alexander, D. Rao, S. Petraki, L. Herboso, K. Kukar, I.
    Batool, S. Wachner, K. Gold, C. Wong, M. O’Connor, K. Brückner, Nature Communications
    8 (2017).
date_created: 2018-12-11T11:48:45Z
date_published: 2017-07-27T00:00:00Z
date_updated: 2023-09-26T15:51:28Z
day: '27'
ddc:
- '570'
- '576'
- '616'
doi: 10.1038/ncomms15990
extern: '1'
external_id:
  isi:
  - '000406360100001'
file:
- access_level: open_access
  checksum: 99a3d63308d4250eda0a35341171f80e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:32Z
  date_updated: 2020-07-14T12:48:12Z
  file_id: '5153'
  file_name: IST-2017-859-v1+1_ncomms15990.pdf
  file_size: 3027104
  relation: main_file
file_date_updated: 2020-07-14T12:48:12Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - '20411723'
publication_status: published
publisher: Nature Publishing Group
publist_id: '6813'
pubrep_id: '859'
quality_controlled: '1'
status: public
title: Regulation of Drosophila hematopoietic sites by Activin-β from active sensory
  neurons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2017'
...
---
_id: '836'
abstract:
- lang: eng
  text: Recent research has examined how to study the topological features of a continuous
    self-map by means of the persistence of the eigenspaces, for given eigenvalues,
    of the endomorphism induced in homology over a field. This raised the question
    of how to select dynamically significant eigenvalues. The present paper aims to
    answer this question, giving an algorithm that computes the persistence of eigenspaces
    for every eigenvalue simultaneously, also expressing said eigenspaces as direct
    sums of “finite” and “singular” subspaces.
alternative_title:
- PROMS
article_processing_charge: No
author:
- first_name: Marc
  full_name: Ethier, Marc
  last_name: Ethier
- first_name: Grzegorz
  full_name: Jablonski, Grzegorz
  id: 4483EF78-F248-11E8-B48F-1D18A9856A87
  last_name: Jablonski
  orcid: 0000-0002-3536-9866
- first_name: Marian
  full_name: Mrozek, Marian
  last_name: Mrozek
citation:
  ama: 'Ethier M, Jablonski G, Mrozek M. Finding eigenvalues of self-maps with the
    Kronecker canonical form. In: <i>Special Sessions in Applications of Computer
    Algebra</i>. Vol 198. Springer; 2017:119-136. doi:<a href="https://doi.org/10.1007/978-3-319-56932-1_8">10.1007/978-3-319-56932-1_8</a>'
  apa: 'Ethier, M., Jablonski, G., &#38; Mrozek, M. (2017). Finding eigenvalues of
    self-maps with the Kronecker canonical form. In <i>Special Sessions in Applications
    of Computer Algebra</i> (Vol. 198, pp. 119–136). Kalamata, Greece: Springer. <a
    href="https://doi.org/10.1007/978-3-319-56932-1_8">https://doi.org/10.1007/978-3-319-56932-1_8</a>'
  chicago: Ethier, Marc, Grzegorz Jablonski, and Marian Mrozek. “Finding Eigenvalues
    of Self-Maps with the Kronecker Canonical Form.” In <i>Special Sessions in Applications
    of Computer Algebra</i>, 198:119–36. Springer, 2017. <a href="https://doi.org/10.1007/978-3-319-56932-1_8">https://doi.org/10.1007/978-3-319-56932-1_8</a>.
  ieee: M. Ethier, G. Jablonski, and M. Mrozek, “Finding eigenvalues of self-maps
    with the Kronecker canonical form,” in <i>Special Sessions in Applications of
    Computer Algebra</i>, Kalamata, Greece, 2017, vol. 198, pp. 119–136.
  ista: 'Ethier M, Jablonski G, Mrozek M. 2017. Finding eigenvalues of self-maps with
    the Kronecker canonical form. Special Sessions in Applications of Computer Algebra.
    ACA: Applications of Computer Algebra, PROMS, vol. 198, 119–136.'
  mla: Ethier, Marc, et al. “Finding Eigenvalues of Self-Maps with the Kronecker Canonical
    Form.” <i>Special Sessions in Applications of Computer Algebra</i>, vol. 198,
    Springer, 2017, pp. 119–36, doi:<a href="https://doi.org/10.1007/978-3-319-56932-1_8">10.1007/978-3-319-56932-1_8</a>.
  short: M. Ethier, G. Jablonski, M. Mrozek, in:, Special Sessions in Applications
    of Computer Algebra, Springer, 2017, pp. 119–136.
conference:
  end_date: 2015-07-23
  location: Kalamata, Greece
  name: 'ACA: Applications of Computer Algebra'
  start_date: 2015-07-20
date_created: 2018-12-11T11:48:46Z
date_published: 2017-07-27T00:00:00Z
date_updated: 2023-09-26T15:50:52Z
day: '27'
department:
- _id: HeEd
doi: 10.1007/978-3-319-56932-1_8
ec_funded: 1
external_id:
  isi:
  - '000434088200008'
intvolume: '       198'
isi: 1
language:
- iso: eng
month: '07'
oa_version: None
page: 119 - 136
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '318493'
  name: Topological Complex Systems
publication: Special Sessions in Applications of Computer Algebra
publication_identifier:
  isbn:
  - 978-331956930-7
publication_status: published
publisher: Springer
publist_id: '6812'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Finding eigenvalues of self-maps with the Kronecker canonical form
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 198
year: '2017'
...
---
_id: '837'
abstract:
- lang: eng
  text: 'The hippocampus is a key brain region for memory and notably for spatial
    memory, and is needed for both spatial working and reference memories. Hippocampal
    place cells selectively discharge in specific locations of the environment to
    form mnemonic represen tations of space. Several behavioral protocols have been
    designed to test spatial memory which requires the experimental subject to utilize
    working memory and reference memory. However, less is known about how these memory
    traces are presented in the hippo campus, especially considering tasks that require
    both spatial working and long -term reference memory demand. The aim of my thesis
    was to elucidate how spatial working memory, reference memory, and the combination
    of both are represented in the hippocampus. In this thesis, using a radial eight
    -arm maze, I examined how the combined demand on these memories influenced place
    cell assemblies while reference memories were partially updated by changing some
    of the reward- arms. This was contrasted with task varian ts requiring working
    or reference memories only. Reference memory update led to gradual place field
    shifts towards the rewards on the switched arms. Cells developed enhanced firing
    in passes between newly -rewarded arms as compared to those containing an unchanged
    reward. The working memory task did not show such gradual changes. Place assemblies
    on occasions replayed trajectories of the maze; at decision points the next arm
    choice was preferentially replayed in tasks needing reference memory while in
    the pure working memory task the previously visited arm was replayed. Hence trajectory
    replay only reflected the decision of the animal in tasks needing reference memory
    update. At the reward locations, in all three tasks outbound trajectories of the
    current arm were preferentially replayed, showing the animals’ next path to the
    center. At reward locations trajectories were replayed preferentially in reverse
    temporal order. Moreover, in the center reverse replay was seen in the working
    memory task but in the other tasks forward replay was seen. Hence, the direction
    of reactivation was determined by the goal locations so that part of the trajectory
    which was closer to the goal was reactivated later in an HSE while places further
    away from the goal were reactivated earlier. Altogether my work demonstrated that
    reference memory update triggers several levels of reorganization of the hippocampal
    cognitive map which are not seen in simpler working memory demand s. Moreover,
    hippocampus is likely to be involved in spatial decisions through reactivating
    planned trajectories when reference memory recall is required for such a decision. '
acknowledgement: 'I am very grateful for the opportunity I have had as a graduate
  student to explore and incredibly interesting branch of neuroscience, and for the
  people who made it possible. Firstly, I would like to offer my thanks to my supervisor
  Professor Jozsef Csicsvari for his great support, guidance and patience offered
  over the years. The door to his office was always open whenever I had questions.
  I have learned a lot from him about carefully designing experiments, asking interesting
  questions and how to integrate results into a broader picture. I also express my
  gratitude to the remarkable post- doc , Dr. Joseph O’Neill. He is a gre at scientific
  role model who is always willing to teach , and advice and talk through problems
  with his full attention. Many thanks to my wonderful “office mates” over the years
  and their support and encouragement, Alice Avernhe, Philipp Schönenberger, Desiree
  Dickerson, Karel Blahna, Charlotte Boccara, Igor Gridchyn, Peter Baracskay, Krisztián
  Kovács, Dámaris Rangel, Karola Käfer and Federico Stella. They were the ones in
  the lab for the many useful discussions about science and for making the laboratory
  such a nice and friendly place to work in. A special thank goes to Michael LoBianco
  and Jago Wallenschus for wonderful technical support. I would also like to thank
  Professor Peter Jonas and Professor David M Bannerman for being my qualifying exam
  and thesi s committee members despite their busy schedule. I am also very thankful
  to IST Austria for their support all throughout my PhD. '
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Haibing
  full_name: Xu, Haibing
  id: 310349D0-F248-11E8-B48F-1D18A9856A87
  last_name: Xu
citation:
  ama: Xu H. Reactivation of the hippocampal cognitive map in goal-directed spatial
    tasks. 2017. doi:<a href="https://doi.org/10.15479/AT:ISTA:th_858">10.15479/AT:ISTA:th_858</a>
  apa: Xu, H. (2017). <i>Reactivation of the hippocampal cognitive map in goal-directed
    spatial tasks</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:th_858">https://doi.org/10.15479/AT:ISTA:th_858</a>
  chicago: Xu, Haibing. “Reactivation of the Hippocampal Cognitive Map in Goal-Directed
    Spatial Tasks.” Institute of Science and Technology Austria, 2017. <a href="https://doi.org/10.15479/AT:ISTA:th_858">https://doi.org/10.15479/AT:ISTA:th_858</a>.
  ieee: H. Xu, “Reactivation of the hippocampal cognitive map in goal-directed spatial
    tasks,” Institute of Science and Technology Austria, 2017.
  ista: Xu H. 2017. Reactivation of the hippocampal cognitive map in goal-directed
    spatial tasks. Institute of Science and Technology Austria.
  mla: Xu, Haibing. <i>Reactivation of the Hippocampal Cognitive Map in Goal-Directed
    Spatial Tasks</i>. Institute of Science and Technology Austria, 2017, doi:<a href="https://doi.org/10.15479/AT:ISTA:th_858">10.15479/AT:ISTA:th_858</a>.
  short: H. Xu, Reactivation of the Hippocampal Cognitive Map in Goal-Directed Spatial
    Tasks, Institute of Science and Technology Austria, 2017.
date_created: 2018-12-11T11:48:46Z
date_published: 2017-08-23T00:00:00Z
date_updated: 2023-09-07T12:06:38Z
day: '23'
ddc:
- '571'
degree_awarded: PhD
department:
- _id: JoCs
doi: 10.15479/AT:ISTA:th_858
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language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: '93'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '6811'
pubrep_id: '858'
related_material:
  record:
  - id: '5828'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
title: Reactivation of the hippocampal cognitive map in goal-directed spatial tasks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2017'
...
---
_id: '838'
abstract:
- lang: eng
  text: 'In this thesis we discuss the exact security of message authentications codes
    HMAC , NMAC , and PMAC . NMAC is a mode of operation which turns a fixed input-length
    keyed hash function f into a variable input-length function. A practical single-key
    variant of NMAC called HMAC is a very popular and widely deployed message authentication
    code (MAC). PMAC is a block-cipher based mode of operation, which also happens
    to be the most famous fully parallel MAC. NMAC was introduced by Bellare, Canetti
    and Krawczyk Crypto’96, who proved it to be a secure pseudorandom function (PRF),
    and thus also a MAC, under two assumptions. Unfortunately, for many instantiations
    of HMAC one of them has been found to be wrong. To restore the provable guarantees
    for NMAC , Bellare [Crypto’06] showed its security without this assumption. PMAC
    was introduced by Black and Rogaway at Eurocrypt 2002. If instantiated with a
    pseudorandom permutation over n -bit strings, PMAC constitutes a provably secure
    variable input-length PRF. For adversaries making q queries, each of length at
    most ` (in n -bit blocks), and of total length σ ≤ q` , the original paper proves
    an upper bound on the distinguishing advantage of O ( σ 2 / 2 n ), while the currently
    best bound is O ( qσ/ 2 n ). In this work we show that this bound is tight by
    giving an attack with advantage Ω( q 2 `/ 2 n ). In the PMAC construction one
    initially XORs a mask to every message block, where the mask for the i th block
    is computed as τ i := γ i · L , where L is a (secret) random value, and γ i is
    the i -th codeword of the Gray code. Our attack applies more generally to any
    sequence of γ i ’s which contains a large coset of a subgroup of GF (2 n ). As
    for NMAC , our first contribution is a simpler and uniform proof: If f is an ε
    -secure PRF (against q queries) and a δ - non-adaptively secure PRF (against q
    queries), then NMAC f is an ( ε + `qδ )-secure PRF against q queries of length
    at most ` blocks each. We also show that this ε + `qδ bound is basically tight
    by constructing an f for which an attack with advantage `qδ exists. Moreover,
    we analyze the PRF-security of a modification of NMAC called NI by An and Bellare
    that avoids the constant rekeying on multi-block messages in NMAC and allows for
    an information-theoretic analysis. We carry out such an analysis, obtaining a
    tight `q 2 / 2 c bound for this step, improving over the trivial bound of ` 2
    q 2 / 2 c . Finally, we investigate, if the security of PMAC can be further improved
    by using τ i ’s that are k -wise independent, for k &gt; 1 (the original has k
    = 1). We observe that the security of PMAC will not increase in general if k =
    2, and then prove that the security increases to O ( q 2 / 2 n ), if the k = 4.
    Due to simple extension attacks, this is the best bound one can hope for, using
    any distribution on the masks. Whether k = 3 is already sufficient to get this
    level of security is left as an open problem. Keywords: Message authentication
    codes, Pseudorandom functions, HMAC, PMAC. '
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Michal
  full_name: Rybar, Michal
  id: 2B3E3DE8-F248-11E8-B48F-1D18A9856A87
  last_name: Rybar
citation:
  ama: Rybar M. (The exact security of) Message authentication codes. 2017. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:th_828">10.15479/AT:ISTA:th_828</a>
  apa: Rybar, M. (2017). <i>(The exact security of) Message authentication codes</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:th_828">https://doi.org/10.15479/AT:ISTA:th_828</a>
  chicago: Rybar, Michal. “(The Exact Security of) Message Authentication Codes.”
    Institute of Science and Technology Austria, 2017. <a href="https://doi.org/10.15479/AT:ISTA:th_828">https://doi.org/10.15479/AT:ISTA:th_828</a>.
  ieee: M. Rybar, “(The exact security of) Message authentication codes,” Institute
    of Science and Technology Austria, 2017.
  ista: Rybar M. 2017. (The exact security of) Message authentication codes. Institute
    of Science and Technology Austria.
  mla: Rybar, Michal. <i>(The Exact Security of) Message Authentication Codes</i>.
    Institute of Science and Technology Austria, 2017, doi:<a href="https://doi.org/10.15479/AT:ISTA:th_828">10.15479/AT:ISTA:th_828</a>.
  short: M. Rybar, (The Exact Security of) Message Authentication Codes, Institute
    of Science and Technology Austria, 2017.
date_created: 2018-12-11T11:48:46Z
date_published: 2017-06-26T00:00:00Z
date_updated: 2023-09-07T12:02:28Z
day: '26'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: KrPi
doi: 10.15479/AT:ISTA:th_828
file:
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  file_size: 847400
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  content_type: application/zip
  creator: dernst
  date_created: 2019-04-05T08:24:11Z
  date_updated: 2020-07-14T12:48:12Z
  file_id: '6202'
  file_name: 2017_Thesis_Rybar_source.zip
  file_size: 26054879
  relation: source_file
file_date_updated: 2020-07-14T12:48:12Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '86'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '6810'
pubrep_id: '828'
related_material:
  record:
  - id: '2082'
    relation: part_of_dissertation
    status: public
  - id: '6196'
    relation: part_of_dissertation
    status: public
status: public
title: (The exact security of) Message authentication codes
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2017'
...
---
_id: '839'
abstract:
- lang: eng
  text: 'This thesis describes a brittle fracture simulation method for visual effects
    applications. Building upon a symmetric Galerkin boundary element method, we first
    compute stress intensity factors following the theory of linear elastic fracture
    mechanics. We then use these stress intensities to simulate the motion of a propagating
    crack front at a significantly higher resolution than the overall deformation
    of the breaking object. Allowing for spatial variations of the material''s toughness
    during crack propagation produces visually realistic, highly-detailed fracture
    surfaces. Furthermore, we introduce approximations for stress intensities and
    crack opening displacements, resulting in both practical speed-up and theoretically
    superior runtime complexity compared to previous methods. While we choose a quasi-static
    approach to fracture mechanics, ignoring dynamic deformations, we also couple
    our fracture simulation framework to a standard rigid-body dynamics solver, enabling
    visual effects artists to simulate both large scale motion, as well as fracturing
    due to collision forces in a combined system. As fractures inside of an object
    grow, their geometry must be represented both in the coarse boundary element mesh,
    as well as at the desired fine output resolution. Using a boundary element method,
    we avoid complicated volumetric meshing operations. Instead we describe a simple
    set of surface meshing operations that allow us to progressively add cracks to
    the mesh of an object and still re-use all previously computed entries of the
    linear boundary element system matrix. On the high resolution level, we opt for
    an implicit surface representation. We then describe how to capture fracture surfaces
    during crack propagation, as well as separate the individual fragments resulting
    from the fracture process, based on this implicit representation. We show results
    obtained with our method, either solving the full boundary element system in every
    time step, or alternatively using our fast approximations. These results demonstrate
    that both of these methods perform well in basic test cases and produce realistic
    fracture surfaces. Furthermore we show that our fast approximations substantially
    out-perform the standard approach in more demanding scenarios. Finally, these
    two methods naturally combine, using the full solution while the problem size
    is manageably small and switching to the fast approximations later on. The resulting
    hybrid method gives the user a direct way to choose between speed and accuracy
    of the simulation. '
acknowledgement: "ERC H2020 programme (grant agreement no. 638176)\r\nFirst of all,
  let me thank my committee members, especially my supervisor, Chris\r\nWojtan, for
  supporting me throughout my PhD. Obviously, none of this work would\r\nhave been
  possible without you.\r\nFurthermore, Thank You to all the people who have contributed
  to this work in various\r\nways, in particular Martin Schanz and his group for providing
  and supporting the\r\nHyENA boundary element library, as well as Eder Miguel and
  Morten Bojsen-Hansen\r\nfor (repeatedly) proof reading and providing valuable suggestions
  during the writing\r\nof this thesis.\r\nI would also like to thank Bernd Bickel,
  and all the members – past and present – of his\r\nand Chris’ research groups at
  IST Austria for always providing honest and insightful\r\nfeedback throughout many
  joint group meetings, as well as Christopher Batty, Eitan\r\nGrinspun, and Fang
  Da for many insights into boundary element methods during our\r\ncollaboration.\r\nAs
  only virtual objects have been harmed in the process of creating this work, I would\r\nlike
  to acknowledge the Stanford scanning repository for providing the “Bunny” and\r\n“Armadillo”
  models, the AIM@SHAPE repository for “Pierre’s hand, watertight”, and\r\nS. Gainsbourg
  for the “Column” via Archive3D.net. Sorry for breaking these models\r\nin many different
  ways.\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: David
  full_name: Hahn, David
  id: 357A6A66-F248-11E8-B48F-1D18A9856A87
  last_name: Hahn
citation:
  ama: Hahn D. Brittle fracture simulation with boundary elements for computer graphics.
    2017. doi:<a href="https://doi.org/10.15479/AT:ISTA:th_855">10.15479/AT:ISTA:th_855</a>
  apa: Hahn, D. (2017). <i>Brittle fracture simulation with boundary elements for
    computer graphics</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:th_855">https://doi.org/10.15479/AT:ISTA:th_855</a>
  chicago: Hahn, David. “Brittle Fracture Simulation with Boundary Elements for Computer
    Graphics.” Institute of Science and Technology Austria, 2017. <a href="https://doi.org/10.15479/AT:ISTA:th_855">https://doi.org/10.15479/AT:ISTA:th_855</a>.
  ieee: D. Hahn, “Brittle fracture simulation with boundary elements for computer
    graphics,” Institute of Science and Technology Austria, 2017.
  ista: Hahn D. 2017. Brittle fracture simulation with boundary elements for computer
    graphics. Institute of Science and Technology Austria.
  mla: Hahn, David. <i>Brittle Fracture Simulation with Boundary Elements for Computer
    Graphics</i>. Institute of Science and Technology Austria, 2017, doi:<a href="https://doi.org/10.15479/AT:ISTA:th_855">10.15479/AT:ISTA:th_855</a>.
  short: D. Hahn, Brittle Fracture Simulation with Boundary Elements for Computer
    Graphics, Institute of Science and Technology Austria, 2017.
date_created: 2018-12-11T11:48:47Z
date_published: 2017-08-14T00:00:00Z
date_updated: 2024-02-21T13:48:02Z
day: '14'
ddc:
- '004'
- '005'
- '006'
- '531'
- '621'
degree_awarded: PhD
department:
- _id: ChWo
doi: 10.15479/AT:ISTA:th_855
ec_funded: 1
file:
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  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:14:46Z
  date_updated: 2020-07-14T12:48:13Z
  file_id: '5100'
  file_name: IST-2017-855-v1+1_thesis_online_pdfA.pdf
  file_size: 14596191
  relation: main_file
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  checksum: 421672f68d563b029869c5cf1713f919
  content_type: application/zip
  creator: dernst
  date_created: 2019-04-05T08:40:30Z
  date_updated: 2020-07-14T12:48:13Z
  file_id: '6207'
  file_name: 2017_thesis_Hahn_source.zip
  file_size: 15060566
  relation: source_file
file_date_updated: 2020-07-14T12:48:13Z
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: '124'
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '638176'
  name: Efficient Simulation of Natural Phenomena at Extremely Large Scales
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '6809'
pubrep_id: '855'
related_material:
  record:
  - id: '1362'
    relation: part_of_dissertation
    status: public
  - id: '1633'
    relation: part_of_dissertation
    status: public
  - id: '5568'
    relation: popular_science
    status: public
status: public
supervisor:
- first_name: Christopher J
  full_name: Wojtan, Christopher J
  id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
  last_name: Wojtan
  orcid: 0000-0001-6646-5546
title: Brittle fracture simulation with boundary elements for computer graphics
tmp:
  image: /images/cc_by_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode
  name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC
    BY-SA 4.0)
  short: CC BY-SA (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2017'
...
---
_id: '84'
abstract:
- lang: eng
  text: The advent of high-throughput technologies and the concurrent advances in
    information sciences have led to a data revolution in biology. This revolution
    is most significant in molecular biology, with an increase in the number and scale
    of the “omics” projects over the last decade. Genomics projects, for example,
    have produced impressive advances in our knowledge of the information concealed
    into genomes, from the many genes that encode for the proteins that are responsible
    for most if not all cellular functions, to the noncoding regions that are now
    known to provide regulatory functions. Proteomics initiatives help to decipher
    the role of post-translation modifications on the protein structures and provide
    maps of protein-protein interactions, while functional genomics is the field that
    attempts to make use of the data produced by these projects to understand protein
    functions. The biggest challenge today is to assimilate the wealth of information
    provided by these initiatives into a conceptual framework that will help us decipher
    life. For example, the current views of the relationship between protein structure
    and function remain fragmented. We know of their sequences, more and more about
    their structures, we have information on their biological activities, but we have
    difficulties connecting this dotted line into an informed whole. We lack the experimental
    and computational tools for directly studying protein structure, function, and
    dynamics at the molecular and supra-molecular levels. In this chapter, we review
    some of the current developments in building the computational tools that are
    needed, focusing on the role that geometry and topology play in these efforts.
    One of our goals is to raise the general awareness about the importance of geometric
    methods in elucidating the mysterious foundations of our very existence. Another
    goal is the broadening of what we consider a geometric algorithm. There is plenty
    of valuable no-man’s-land between combinatorial and numerical algorithms, and
    it seems opportune to explore this land with a computational-geometric frame of
    mind.
article_processing_charge: No
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Patrice
  full_name: Koehl, Patrice
  last_name: Koehl
citation:
  ama: 'Edelsbrunner H, Koehl P. Computational topology for structural molecular biology.
    In: Toth C, O’Rourke J, Goodman J, eds. <i>Handbook of Discrete and Computational
    Geometry, Third Edition</i>. Handbook of Discrete and Computational Geometry.
    Taylor &#38; Francis; 2017:1709-1735. doi:<a href="https://doi.org/10.1201/9781315119601">10.1201/9781315119601</a>'
  apa: Edelsbrunner, H., &#38; Koehl, P. (2017). Computational topology for structural
    molecular biology. In C. Toth, J. O’Rourke, &#38; J. Goodman (Eds.), <i>Handbook
    of Discrete and Computational Geometry, Third Edition</i> (pp. 1709–1735). Taylor
    &#38; Francis. <a href="https://doi.org/10.1201/9781315119601">https://doi.org/10.1201/9781315119601</a>
  chicago: Edelsbrunner, Herbert, and Patrice Koehl. “Computational Topology for Structural
    Molecular Biology.” In <i>Handbook of Discrete and Computational Geometry, Third
    Edition</i>, edited by Csaba Toth, Joseph O’Rourke, and Jacob Goodman, 1709–35.
    Handbook of Discrete and Computational Geometry. Taylor &#38; Francis, 2017. <a
    href="https://doi.org/10.1201/9781315119601">https://doi.org/10.1201/9781315119601</a>.
  ieee: H. Edelsbrunner and P. Koehl, “Computational topology for structural molecular
    biology,” in <i>Handbook of Discrete and Computational Geometry, Third Edition</i>,
    C. Toth, J. O’Rourke, and J. Goodman, Eds. Taylor &#38; Francis, 2017, pp. 1709–1735.
  ista: 'Edelsbrunner H, Koehl P. 2017.Computational topology for structural molecular
    biology. In: Handbook of Discrete and Computational Geometry, Third Edition. ,
    1709–1735.'
  mla: Edelsbrunner, Herbert, and Patrice Koehl. “Computational Topology for Structural
    Molecular Biology.” <i>Handbook of Discrete and Computational Geometry, Third
    Edition</i>, edited by Csaba Toth et al., Taylor &#38; Francis, 2017, pp. 1709–35,
    doi:<a href="https://doi.org/10.1201/9781315119601">10.1201/9781315119601</a>.
  short: H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.),
    Handbook of Discrete and Computational Geometry, Third Edition, Taylor &#38; Francis,
    2017, pp. 1709–1735.
date_created: 2018-12-11T11:44:32Z
date_published: 2017-11-09T00:00:00Z
date_updated: 2023-10-16T11:15:22Z
day: '09'
department:
- _id: HeEd
doi: 10.1201/9781315119601
editor:
- first_name: Csaba
  full_name: Toth, Csaba
  last_name: Toth
- first_name: Joseph
  full_name: O'Rourke, Joseph
  last_name: O'Rourke
- first_name: Jacob
  full_name: Goodman, Jacob
  last_name: Goodman
language:
- iso: eng
month: '11'
oa_version: None
page: 1709 - 1735
publication: Handbook of Discrete and Computational Geometry, Third Edition
publication_identifier:
  eisbn:
  - '9781498711425'
publication_status: published
publisher: Taylor & Francis
publist_id: '7970'
quality_controlled: '1'
scopus_import: '1'
series_title: Handbook of Discrete and Computational Geometry
status: public
title: Computational topology for structural molecular biology
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '840'
abstract:
- lang: eng
  text: Heavy holes confined in quantum dots are predicted to be promising candidates
    for the realization of spin qubits with long coherence times. Here we focus on
    such heavy-hole states confined in germanium hut wires. By tuning the growth density
    of the latter we can realize a T-like structure between two neighboring wires.
    Such a structure allows the realization of a charge sensor, which is electrostatically
    and tunnel coupled to a quantum dot, with charge-transfer signals as high as 0.3
    e. By integrating the T-like structure into a radiofrequency reflectometry setup,
    single-shot measurements allowing the extraction of hole tunneling times are performed.
    The extracted tunneling times of less than 10 μs are attributed to the small effective
    mass of Ge heavy-hole states and pave the way toward projective spin readout measurements.
acknowledged_ssus:
- _id: M-Shop
article_processing_charge: No
author:
- first_name: Lada
  full_name: Vukusic, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukusic
  orcid: 0000-0003-2424-8636
- first_name: Josip
  full_name: Kukucka, Josip
  id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
  last_name: Kukucka
- first_name: Hannes
  full_name: Watzinger, Hannes
  id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
  last_name: Watzinger
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
citation:
  ama: Vukušić L, Kukucka J, Watzinger H, Katsaros G. Fast hole tunneling times in
    germanium hut wires probed by single-shot reflectometry. <i>Nano Letters</i>.
    2017;17(9):5706-5710. doi:<a href="https://doi.org/10.1021/acs.nanolett.7b02627">10.1021/acs.nanolett.7b02627</a>
  apa: Vukušić, L., Kukucka, J., Watzinger, H., &#38; Katsaros, G. (2017). Fast hole
    tunneling times in germanium hut wires probed by single-shot reflectometry. <i>Nano
    Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.7b02627">https://doi.org/10.1021/acs.nanolett.7b02627</a>
  chicago: Vukušić, Lada, Josip Kukucka, Hannes Watzinger, and Georgios Katsaros.
    “Fast Hole Tunneling Times in Germanium Hut Wires Probed by Single-Shot Reflectometry.”
    <i>Nano Letters</i>. American Chemical Society, 2017. <a href="https://doi.org/10.1021/acs.nanolett.7b02627">https://doi.org/10.1021/acs.nanolett.7b02627</a>.
  ieee: L. Vukušić, J. Kukucka, H. Watzinger, and G. Katsaros, “Fast hole tunneling
    times in germanium hut wires probed by single-shot reflectometry,” <i>Nano Letters</i>,
    vol. 17, no. 9. American Chemical Society, pp. 5706–5710, 2017.
  ista: Vukušić L, Kukucka J, Watzinger H, Katsaros G. 2017. Fast hole tunneling times
    in germanium hut wires probed by single-shot reflectometry. Nano Letters. 17(9),
    5706–5710.
  mla: Vukušić, Lada, et al. “Fast Hole Tunneling Times in Germanium Hut Wires Probed
    by Single-Shot Reflectometry.” <i>Nano Letters</i>, vol. 17, no. 9, American Chemical
    Society, 2017, pp. 5706–10, doi:<a href="https://doi.org/10.1021/acs.nanolett.7b02627">10.1021/acs.nanolett.7b02627</a>.
  short: L. Vukušić, J. Kukucka, H. Watzinger, G. Katsaros, Nano Letters 17 (2017)
    5706–5710.
date_created: 2018-12-11T11:48:47Z
date_published: 2017-08-10T00:00:00Z
date_updated: 2023-09-26T15:50:22Z
day: '10'
ddc:
- '539'
department:
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doi: 10.1021/acs.nanolett.7b02627
ec_funded: 1
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oa_version: Published Version
page: 5706 - 5710
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '335497'
  name: Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires
publication: Nano Letters
publication_identifier:
  issn:
  - '15306984'
publication_status: published
publisher: American Chemical Society
publist_id: '6808'
pubrep_id: '865'
quality_controlled: '1'
related_material:
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    relation: popular_science
  - id: '69'
    relation: dissertation_contains
    status: public
  - id: '7996'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Fast hole tunneling times in germanium hut wires probed by single-shot reflectometry
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 17
year: '2017'
...
---
_id: '8423'
abstract:
- lang: eng
  text: In this paper we show that for a generic strictly convex domain, one can recover
    the eigendata corresponding to Aubry–Mather periodic orbits of the induced billiard
    map from the (maximal) marked length spectrum of the domain.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Guan
  full_name: Huang, Guan
  last_name: Huang
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
- first_name: Alfonso
  full_name: Sorrentino, Alfonso
  last_name: Sorrentino
citation:
  ama: Huang G, Kaloshin V, Sorrentino A. On the marked length spectrum of generic
    strictly convex billiard tables. <i>Duke Mathematical Journal</i>. 2017;167(1):175-209.
    doi:<a href="https://doi.org/10.1215/00127094-2017-0038">10.1215/00127094-2017-0038</a>
  apa: Huang, G., Kaloshin, V., &#38; Sorrentino, A. (2017). On the marked length
    spectrum of generic strictly convex billiard tables. <i>Duke Mathematical Journal</i>.
    Duke University Press. <a href="https://doi.org/10.1215/00127094-2017-0038">https://doi.org/10.1215/00127094-2017-0038</a>
  chicago: Huang, Guan, Vadim Kaloshin, and Alfonso Sorrentino. “On the Marked Length
    Spectrum of Generic Strictly Convex Billiard Tables.” <i>Duke Mathematical Journal</i>.
    Duke University Press, 2017. <a href="https://doi.org/10.1215/00127094-2017-0038">https://doi.org/10.1215/00127094-2017-0038</a>.
  ieee: G. Huang, V. Kaloshin, and A. Sorrentino, “On the marked length spectrum of
    generic strictly convex billiard tables,” <i>Duke Mathematical Journal</i>, vol.
    167, no. 1. Duke University Press, pp. 175–209, 2017.
  ista: Huang G, Kaloshin V, Sorrentino A. 2017. On the marked length spectrum of
    generic strictly convex billiard tables. Duke Mathematical Journal. 167(1), 175–209.
  mla: Huang, Guan, et al. “On the Marked Length Spectrum of Generic Strictly Convex
    Billiard Tables.” <i>Duke Mathematical Journal</i>, vol. 167, no. 1, Duke University
    Press, 2017, pp. 175–209, doi:<a href="https://doi.org/10.1215/00127094-2017-0038">10.1215/00127094-2017-0038</a>.
  short: G. Huang, V. Kaloshin, A. Sorrentino, Duke Mathematical Journal 167 (2017)
    175–209.
date_created: 2020-09-17T10:42:42Z
date_published: 2017-12-08T00:00:00Z
date_updated: 2021-01-12T08:19:11Z
day: '08'
doi: 10.1215/00127094-2017-0038
extern: '1'
external_id:
  arxiv:
  - '1603.08838'
intvolume: '       167'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1603.08838
month: '12'
oa: 1
oa_version: Preprint
page: 175-209
publication: Duke Mathematical Journal
publication_identifier:
  issn:
  - 0012-7094
publication_status: published
publisher: Duke University Press
quality_controlled: '1'
status: public
title: On the marked length spectrum of generic strictly convex billiard tables
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 167
year: '2017'
...
---
_id: '8427'
abstract:
- lang: eng
  text: We show that any sufficiently (finitely) smooth ℤ₂-symmetric strictly convex
    domain sufficiently close to a circle is dynamically spectrally rigid; i.e., all
    deformations among domains in the same class that preserve the length of all periodic
    orbits of the associated billiard flow must necessarily be isometric deformations.
    This gives a partial answer to a question of P. Sarnak.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jacopo
  full_name: De Simoi, Jacopo
  last_name: De Simoi
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
- first_name: Qiaoling
  full_name: Wei, Qiaoling
  last_name: Wei
citation:
  ama: De Simoi J, Kaloshin V, Wei Q. Dynamical spectral rigidity among Z2-symmetric
    strictly convex domains close to a circle. <i>Annals of Mathematics</i>. 2017;186(1):277-314.
    doi:<a href="https://doi.org/10.4007/annals.2017.186.1.7">10.4007/annals.2017.186.1.7</a>
  apa: De Simoi, J., Kaloshin, V., &#38; Wei, Q. (2017). Dynamical spectral rigidity
    among Z2-symmetric strictly convex domains close to a circle. <i>Annals of Mathematics</i>.
    Annals of Mathematics. <a href="https://doi.org/10.4007/annals.2017.186.1.7">https://doi.org/10.4007/annals.2017.186.1.7</a>
  chicago: De Simoi, Jacopo, Vadim Kaloshin, and Qiaoling Wei. “Dynamical Spectral
    Rigidity among Z2-Symmetric Strictly Convex Domains Close to a Circle.” <i>Annals
    of Mathematics</i>. Annals of Mathematics, 2017. <a href="https://doi.org/10.4007/annals.2017.186.1.7">https://doi.org/10.4007/annals.2017.186.1.7</a>.
  ieee: J. De Simoi, V. Kaloshin, and Q. Wei, “Dynamical spectral rigidity among Z2-symmetric
    strictly convex domains close to a circle,” <i>Annals of Mathematics</i>, vol.
    186, no. 1. Annals of Mathematics, pp. 277–314, 2017.
  ista: De Simoi J, Kaloshin V, Wei Q. 2017. Dynamical spectral rigidity among Z2-symmetric
    strictly convex domains close to a circle. Annals of Mathematics. 186(1), 277–314.
  mla: De Simoi, Jacopo, et al. “Dynamical Spectral Rigidity among Z2-Symmetric Strictly
    Convex Domains Close to a Circle.” <i>Annals of Mathematics</i>, vol. 186, no.
    1, Annals of Mathematics, 2017, pp. 277–314, doi:<a href="https://doi.org/10.4007/annals.2017.186.1.7">10.4007/annals.2017.186.1.7</a>.
  short: J. De Simoi, V. Kaloshin, Q. Wei, Annals of Mathematics 186 (2017) 277–314.
date_created: 2020-09-17T10:46:42Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2021-01-12T08:19:12Z
day: '01'
doi: 10.4007/annals.2017.186.1.7
extern: '1'
external_id:
  arxiv:
  - '1606.00230'
intvolume: '       186'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1606.00230
month: '07'
oa: 1
oa_version: Preprint
page: 277-314
publication: Annals of Mathematics
publication_identifier:
  issn:
  - 0003-486X
publication_status: published
publisher: Annals of Mathematics
quality_controlled: '1'
status: public
title: Dynamical spectral rigidity among Z2-symmetric strictly convex domains close
  to a circle
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 186
year: '2017'
...
