---
_id: '433'
abstract:
- lang: eng
  text: 'A thrackle is a graph drawn in the plane so that every pair of its edges
    meet exactly once: either at a common end vertex or in a proper crossing. We prove
    that any thrackle of n vertices has at most 1.3984n edges. Quasi-thrackles are
    defined similarly, except that every pair of edges that do not share a vertex
    are allowed to cross an odd number of times. It is also shown that the maximum
    number of edges of a quasi-thrackle on n vertices is 3/2(n-1), and that this bound
    is best possible for infinitely many values of n.'
alternative_title:
- LNCS
arxiv: 1
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: János
  full_name: Pach, János
  last_name: Pach
citation:
  ama: 'Fulek R, Pach J. Thrackles: An improved upper bound. In: Vol 10692. Springer;
    2018:160-166. doi:<a href="https://doi.org/10.1007/978-3-319-73915-1_14">10.1007/978-3-319-73915-1_14</a>'
  apa: 'Fulek, R., &#38; Pach, J. (2018). Thrackles: An improved upper bound (Vol.
    10692, pp. 160–166). Presented at the GD 2017: Graph Drawing and Network Visualization,
    Boston, MA, United States: Springer. <a href="https://doi.org/10.1007/978-3-319-73915-1_14">https://doi.org/10.1007/978-3-319-73915-1_14</a>'
  chicago: 'Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound,”
    10692:160–66. Springer, 2018. <a href="https://doi.org/10.1007/978-3-319-73915-1_14">https://doi.org/10.1007/978-3-319-73915-1_14</a>.'
  ieee: 'R. Fulek and J. Pach, “Thrackles: An improved upper bound,” presented at
    the GD 2017: Graph Drawing and Network Visualization, Boston, MA, United States,
    2018, vol. 10692, pp. 160–166.'
  ista: 'Fulek R, Pach J. 2018. Thrackles: An improved upper bound. GD 2017: Graph
    Drawing and Network Visualization, LNCS, vol. 10692, 160–166.'
  mla: 'Fulek, Radoslav, and János Pach. <i>Thrackles: An Improved Upper Bound</i>.
    Vol. 10692, Springer, 2018, pp. 160–66, doi:<a href="https://doi.org/10.1007/978-3-319-73915-1_14">10.1007/978-3-319-73915-1_14</a>.'
  short: R. Fulek, J. Pach, in:, Springer, 2018, pp. 160–166.
conference:
  end_date: 2017-09-27
  location: Boston, MA, United States
  name: 'GD 2017: Graph Drawing and Network Visualization'
  start_date: 201-09-25
date_created: 2018-12-11T11:46:27Z
date_published: 2018-01-21T00:00:00Z
date_updated: 2023-08-24T14:39:32Z
day: '21'
department:
- _id: UlWa
doi: 10.1007/978-3-319-73915-1_14
external_id:
  arxiv:
  - '1708.08037'
intvolume: '     10692'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1708.08037
month: '01'
oa: 1
oa_version: Submitted Version
page: 160 - 166
publication_status: published
publisher: Springer
publist_id: '7390'
quality_controlled: '1'
related_material:
  record:
  - id: '5857'
    relation: later_version
    status: public
scopus_import: 1
status: public
title: 'Thrackles: An improved upper bound'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10692
year: '2018'
...
---
_id: '434'
abstract:
- lang: eng
  text: In this paper, we present a formal model-driven design approach to establish
    a safety-assured implementation of multifunction vehicle bus controller (MVBC),
    which controls the data transmission among the devices of the vehicle. First,
    the generic models and safety requirements described in International Electrotechnical
    Commission Standard 61375 are formalized as time automata and timed computation
    tree logic formulas, respectively. With model checking tool Uppaal, we verify
    whether or not the constructed timed automata satisfy the formulas and several
    logic inconsistencies in the original standard are detected and corrected. Then,
    we apply the code generation tool Times to generate C code from the verified model,
    which is later synthesized into a real MVBC chip, with some handwriting glue code.
    Furthermore, the runtime verification tool RMOR is applied on the integrated code,
    to verify some safety requirements that cannot be formalized on the timed automata.
    For evaluation, we compare the proposed approach with existing MVBC design methods,
    such as BeagleBone, Galsblock, and Simulink. Experiments show that more ambiguousness
    or bugs in the standard are detected during Uppaal verification, and the generated
    code of Times outperforms the C code generated by others in terms of the synthesized
    binary code size. The errors in the standard have been confirmed and the resulting
    MVBC has been deployed in the real train communication network.
article_processing_charge: No
author:
- first_name: Yu
  full_name: Jiang, Yu
  last_name: Jiang
- first_name: Han
  full_name: Liu, Han
  last_name: Liu
- first_name: Huobing
  full_name: Song, Huobing
  last_name: Song
- first_name: Hui
  full_name: Kong, Hui
  id: 3BDE25AA-F248-11E8-B48F-1D18A9856A87
  last_name: Kong
  orcid: 0000-0002-3066-6941
- first_name: Rui
  full_name: Wang, Rui
  last_name: Wang
- first_name: Yong
  full_name: Guan, Yong
  last_name: Guan
- first_name: Lui
  full_name: Sha, Lui
  last_name: Sha
citation:
  ama: Jiang Y, Liu H, Song H, et al. Safety-assured model-driven design of the multifunction
    vehicle bus controller. <i>IEEE Transactions on Intelligent Transportation Systems</i>.
    2018;19(10):3320-3333. doi:<a href="https://doi.org/10.1109/TITS.2017.2778077">10.1109/TITS.2017.2778077</a>
  apa: Jiang, Y., Liu, H., Song, H., Kong, H., Wang, R., Guan, Y., &#38; Sha, L. (2018).
    Safety-assured model-driven design of the multifunction vehicle bus controller.
    <i>IEEE Transactions on Intelligent Transportation Systems</i>. IEEE. <a href="https://doi.org/10.1109/TITS.2017.2778077">https://doi.org/10.1109/TITS.2017.2778077</a>
  chicago: Jiang, Yu, Han Liu, Huobing Song, Hui Kong, Rui Wang, Yong Guan, and Lui
    Sha. “Safety-Assured Model-Driven Design of the Multifunction Vehicle Bus Controller.”
    <i>IEEE Transactions on Intelligent Transportation Systems</i>. IEEE, 2018. <a
    href="https://doi.org/10.1109/TITS.2017.2778077">https://doi.org/10.1109/TITS.2017.2778077</a>.
  ieee: Y. Jiang <i>et al.</i>, “Safety-assured model-driven design of the multifunction
    vehicle bus controller,” <i>IEEE Transactions on Intelligent Transportation Systems</i>,
    vol. 19, no. 10. IEEE, pp. 3320–3333, 2018.
  ista: Jiang Y, Liu H, Song H, Kong H, Wang R, Guan Y, Sha L. 2018. Safety-assured
    model-driven design of the multifunction vehicle bus controller. IEEE Transactions
    on Intelligent Transportation Systems. 19(10), 3320–3333.
  mla: Jiang, Yu, et al. “Safety-Assured Model-Driven Design of the Multifunction
    Vehicle Bus Controller.” <i>IEEE Transactions on Intelligent Transportation Systems</i>,
    vol. 19, no. 10, IEEE, 2018, pp. 3320–33, doi:<a href="https://doi.org/10.1109/TITS.2017.2778077">10.1109/TITS.2017.2778077</a>.
  short: Y. Jiang, H. Liu, H. Song, H. Kong, R. Wang, Y. Guan, L. Sha, IEEE Transactions
    on Intelligent Transportation Systems 19 (2018) 3320–3333.
date_created: 2018-12-11T11:46:27Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2023-09-18T08:12:49Z
day: '01'
department:
- _id: ToHe
doi: 10.1109/TITS.2017.2778077
external_id:
  isi:
  - '000446651100020'
intvolume: '        19'
isi: 1
issue: '10'
language:
- iso: eng
month: '01'
oa_version: None
page: 3320 - 3333
publication: IEEE Transactions on Intelligent Transportation Systems
publication_status: published
publisher: IEEE
publist_id: '7389'
quality_controlled: '1'
related_material:
  record:
  - id: '1205'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Safety-assured model-driven design of the multifunction vehicle bus controller
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 19
year: '2018'
...
---
_id: '435'
abstract:
- lang: eng
  text: It is shown that two fundamentally different phenomena, the bound states in
    continuum and the spectral singularity (or time-reversed spectral singularity),
    can occur simultaneously. This can be achieved in a rectangular core dielectric
    waveguide with an embedded active (or absorbing) layer. In such a system a two-dimensional
    bound state in a continuum is created in the plane of a waveguide cross section,
    and it is emitted or absorbed along the waveguide core. The idea can be used for
    experimental implementation of a laser or a coherent-perfect-absorber for a photonic
    bound state that resides in a continuous spectrum.
acknowledgement: 'Seventh Framework Programme (FP7) People: Marie-Curie Actions (PEOPLE)
  (291734). B. M. acknowledges the financial support by the People Programme (Marie
  Curie Actions) of the European Union’s Seventh Framework Programme (FP7/ 2007-2013)
  under REA.'
article_processing_charge: No
arxiv: 1
author:
- first_name: Bikashkali
  full_name: Midya, Bikashkali
  id: 456187FC-F248-11E8-B48F-1D18A9856A87
  last_name: Midya
- first_name: Vladimir
  full_name: Konotop, Vladimir
  last_name: Konotop
citation:
  ama: Midya B, Konotop V. Coherent-perfect-absorber and laser for bound states in
    a continuum. <i>Optics Letters</i>. 2018;43(3):607-610. doi:<a href="https://doi.org/10.1364/OL.43.000607">10.1364/OL.43.000607</a>
  apa: Midya, B., &#38; Konotop, V. (2018). Coherent-perfect-absorber and laser for
    bound states in a continuum. <i>Optics Letters</i>. Optica  Publishing Group.
    <a href="https://doi.org/10.1364/OL.43.000607">https://doi.org/10.1364/OL.43.000607</a>
  chicago: Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and
    Laser for Bound States in a Continuum.” <i>Optics Letters</i>. Optica  Publishing
    Group, 2018. <a href="https://doi.org/10.1364/OL.43.000607">https://doi.org/10.1364/OL.43.000607</a>.
  ieee: B. Midya and V. Konotop, “Coherent-perfect-absorber and laser for bound states
    in a continuum,” <i>Optics Letters</i>, vol. 43, no. 3. Optica  Publishing Group,
    pp. 607–610, 2018.
  ista: Midya B, Konotop V. 2018. Coherent-perfect-absorber and laser for bound states
    in a continuum. Optics Letters. 43(3), 607–610.
  mla: Midya, Bikashkali, and Vladimir Konotop. “Coherent-Perfect-Absorber and Laser
    for Bound States in a Continuum.” <i>Optics Letters</i>, vol. 43, no. 3, Optica 
    Publishing Group, 2018, pp. 607–10, doi:<a href="https://doi.org/10.1364/OL.43.000607">10.1364/OL.43.000607</a>.
  short: B. Midya, V. Konotop, Optics Letters 43 (2018) 607–610.
date_created: 2018-12-11T11:46:27Z
date_published: 2018-02-01T00:00:00Z
date_updated: 2023-10-17T12:15:06Z
day: '01'
department:
- _id: MiLe
doi: 10.1364/OL.43.000607
ec_funded: 1
external_id:
  arxiv:
  - '1711.01986'
  isi:
  - '000423776600066'
intvolume: '        43'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1711.01986
month: '02'
oa: 1
oa_version: Preprint
page: 607 - 610
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Optics Letters
publication_status: published
publisher: Optica  Publishing Group
publist_id: '7388'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coherent-perfect-absorber and laser for bound states in a continuum
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2018'
...
---
_id: '436'
abstract:
- lang: eng
  text: There has been significant interest recently in using complex quantum systems
    to create effective nonreciprocal dynamics. Proposals have been put forward for
    the realization of artificial magnetic fields for photons and phonons; experimental
    progress is fast making these proposals a reality. Much work has concentrated
    on the use of such systems for controlling the flow of signals, e.g., to create
    isolators or directional amplifiers for optical signals. In this Letter, we build
    on this work but move in a different direction. We develop the theory of and discuss
    a potential realization for the controllable flow of thermal noise in quantum
    systems. We demonstrate theoretically that the unidirectional flow of thermal
    noise is possible within quantum cascaded systems. Viewing an optomechanical platform
    as a cascaded system we show here that one can ultimately control the direction
    of the flow of thermal noise. By appropriately engineering the mechanical resonator,
    which acts as an artificial reservoir, the flow of thermal noise can be constrained
    to a desired direction, yielding a thermal rectifier. The proposed quantum thermal
    noise rectifier could potentially be used to develop devices such as a thermal
    modulator, a thermal router, and a thermal amplifier for nanoelectronic devices
    and superconducting circuits.
article_number: '060601 '
article_processing_charge: No
arxiv: 1
author:
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Matteo
  full_name: Aquilina, Matteo
  last_name: Aquilina
- first_name: André
  full_name: Xuereb, André
  last_name: Xuereb
citation:
  ama: Barzanjeh S, Aquilina M, Xuereb A. Manipulating the flow of thermal noise in
    quantum devices. <i>Physical Review Letters</i>. 2018;120(6). doi:<a href="https://doi.org/10.1103/PhysRevLett.120.060601">10.1103/PhysRevLett.120.060601</a>
  apa: Barzanjeh, S., Aquilina, M., &#38; Xuereb, A. (2018). Manipulating the flow
    of thermal noise in quantum devices. <i>Physical Review Letters</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevLett.120.060601">https://doi.org/10.1103/PhysRevLett.120.060601</a>
  chicago: Barzanjeh, Shabir, Matteo Aquilina, and André Xuereb. “Manipulating the
    Flow of Thermal Noise in Quantum Devices.” <i>Physical Review Letters</i>. American
    Physical Society, 2018. <a href="https://doi.org/10.1103/PhysRevLett.120.060601">https://doi.org/10.1103/PhysRevLett.120.060601</a>.
  ieee: S. Barzanjeh, M. Aquilina, and A. Xuereb, “Manipulating the flow of thermal
    noise in quantum devices,” <i>Physical Review Letters</i>, vol. 120, no. 6. American
    Physical Society, 2018.
  ista: Barzanjeh S, Aquilina M, Xuereb A. 2018. Manipulating the flow of thermal
    noise in quantum devices. Physical Review Letters. 120(6), 060601.
  mla: Barzanjeh, Shabir, et al. “Manipulating the Flow of Thermal Noise in Quantum
    Devices.” <i>Physical Review Letters</i>, vol. 120, no. 6, 060601, American Physical
    Society, 2018, doi:<a href="https://doi.org/10.1103/PhysRevLett.120.060601">10.1103/PhysRevLett.120.060601</a>.
  short: S. Barzanjeh, M. Aquilina, A. Xuereb, Physical Review Letters 120 (2018).
date_created: 2018-12-11T11:46:28Z
date_published: 2018-02-07T00:00:00Z
date_updated: 2023-09-13T08:52:27Z
day: '07'
department:
- _id: JoFi
doi: 10.1103/PhysRevLett.120.060601
ec_funded: 1
external_id:
  arxiv:
  - '1706.09051'
  isi:
  - '000424382100004'
intvolume: '       120'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1706.09051
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 257EB838-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '732894'
  name: Hybrid Optomechanical Technologies
- _id: 258047B6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '707438'
  name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
    with cavity Optomechanics SUPEREOM'
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '7387'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/interference-as-a-new-method-for-cooling-quantum-devices/
scopus_import: '1'
status: public
title: Manipulating the flow of thermal noise in quantum devices
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 120
year: '2018'
...
---
_id: '437'
abstract:
- lang: eng
  text: Dendritic cells (DCs) are sentinels of the adaptive immune system that reside
    in peripheral organs of mammals. Upon pathogen encounter, they undergo maturation
    and up-regulate the chemokine receptor CCR7 that guides them along gradients of
    its chemokine ligands CCL19 and 21 to the next draining lymph node. There, DCs
    present peripherally acquired antigen to naïve T cells, thereby triggering adaptive
    immunity.
acknowledged_ssus:
- _id: SSU
acknowledgement: "This work was supported by grants of the European Research Council
  (ERC CoG 724373) and the Austrian Science Fund (FWF) to M.S. We thank the scientific
  support units at IST Austria for excellent technical support.\r\nWe thank the  scientific
  \ support units at IST Austria for excellent technical support.   "
article_processing_charge: Yes (via OA deal)
author:
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Ingrid
  full_name: De Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: De Vries
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Hans
  full_name: Haecker, Hans
  last_name: Haecker
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. Fast
    and efficient genetic engineering of hematopoietic precursor cells for the study
    of dendritic cell migration. <i>European Journal of Immunology</i>. 2018;48(6):1074-1077.
    doi:<a href="https://doi.org/10.1002/eji.201747358">10.1002/eji.201747358</a>
  apa: Leithner, A. F., Renkawitz, J., de Vries, I., Hauschild, R., Haecker, H., &#38;
    Sixt, M. K. (2018). Fast and efficient genetic engineering of hematopoietic precursor
    cells for the study of dendritic cell migration. <i>European Journal of Immunology</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1002/eji.201747358">https://doi.org/10.1002/eji.201747358</a>
  chicago: Leithner, Alexander F, Jörg Renkawitz, Ingrid de Vries, Robert Hauschild,
    Hans Haecker, and Michael K Sixt. “Fast and Efficient Genetic Engineering of Hematopoietic
    Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal
    of Immunology</i>. Wiley-Blackwell, 2018. <a href="https://doi.org/10.1002/eji.201747358">https://doi.org/10.1002/eji.201747358</a>.
  ieee: A. F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, and M.
    K. Sixt, “Fast and efficient genetic engineering of hematopoietic precursor cells
    for the study of dendritic cell migration,” <i>European Journal of Immunology</i>,
    vol. 48, no. 6. Wiley-Blackwell, pp. 1074–1077, 2018.
  ista: Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. 2018.
    Fast and efficient genetic engineering of hematopoietic precursor cells for the
    study of dendritic cell migration. European Journal of Immunology. 48(6), 1074–1077.
  mla: Leithner, Alexander F., et al. “Fast and Efficient Genetic Engineering of Hematopoietic
    Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal
    of Immunology</i>, vol. 48, no. 6, Wiley-Blackwell, 2018, pp. 1074–77, doi:<a
    href="https://doi.org/10.1002/eji.201747358">10.1002/eji.201747358</a>.
  short: A.F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, M.K.
    Sixt, European Journal of Immunology 48 (2018) 1074–1077.
date_created: 2018-12-11T11:46:28Z
date_published: 2018-02-13T00:00:00Z
date_updated: 2023-09-11T14:01:18Z
day: '13'
ddc:
- '570'
department:
- _id: MiSi
- _id: Bio
doi: 10.1002/eji.201747358
ec_funded: 1
external_id:
  isi:
  - '000434963700016'
file:
- access_level: open_access
  checksum: 9d5b74cd016505aeb9a4c2d33bbedaeb
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:56Z
  date_updated: 2020-07-14T12:46:27Z
  file_id: '5044'
  file_name: IST-2018-1067-v1+2_Leithner_et_al-2018-European_Journal_of_Immunology.pdf
  file_size: 590106
  relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: '        48'
isi: 1
issue: '6'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: 1074 - 1077
project:
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular navigation along spatial gradients
publication: European Journal of Immunology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7386'
pubrep_id: '1067'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fast and efficient genetic engineering of hematopoietic precursor cells for
  the study of dendritic cell migration
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 48
year: '2018'
...
---
_id: '438'
abstract:
- lang: eng
  text: The MazF toxin sequence-specifically cleaves single-stranded RNA upon various
    stressful conditions, and it is activated as a part of the mazEF toxin–antitoxin
    module in Escherichia coli. Although autoregulation of mazEF expression through
    the MazE antitoxin-dependent transcriptional repression has been biochemically
    characterized, less is known about post-transcriptional autoregulation, as well
    as how both of these autoregulatory features affect growth of single cells during
    conditions that promote MazF production. Here, we demonstrate post-transcriptional
    autoregulation of mazF expression dynamics by MazF cleaving its own transcript.
    Single-cell analyses of bacterial populations during ectopic MazF production indicated
    that two-level autoregulation of mazEF expression influences cell-to-cell growth
    rate heterogeneity. The increase in growth rate heterogeneity is governed by the
    MazE antitoxin, and tuned by the MazF-dependent mazF mRNA cleavage. Also, both
    autoregulatory features grant rapid exit from the stress caused by mazF overexpression.
    Time-lapse microscopy revealed that MazF-mediated cleavage of mazF mRNA leads
    to increased temporal variability in length of individual cells during ectopic
    mazF overexpression, as explained by a stochastic model indicating that mazEF
    mRNA cleavage underlies temporal fluctuations in MazF levels during stress.
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Nela
  full_name: Nikolic, Nela
  id: 42D9CABC-F248-11E8-B48F-1D18A9856A87
  last_name: Nikolic
  orcid: 0000-0001-9068-6090
- first_name: Tobias
  full_name: Bergmiller, Tobias
  id: 2C471CFA-F248-11E8-B48F-1D18A9856A87
  last_name: Bergmiller
  orcid: 0000-0001-5396-4346
- first_name: Alexandra
  full_name: Vandervelde, Alexandra
  last_name: Vandervelde
- first_name: Tanino
  full_name: Albanese, Tanino
  last_name: Albanese
- first_name: Lendert
  full_name: Gelens, Lendert
  last_name: Gelens
- first_name: Isabella
  full_name: Moll, Isabella
  last_name: Moll
citation:
  ama: Nikolic N, Bergmiller T, Vandervelde A, Albanese T, Gelens L, Moll I. Autoregulation
    of mazEF expression underlies growth heterogeneity in bacterial populations. <i>Nucleic
    Acids Research</i>. 2018;46(6):2918-2931. doi:<a href="https://doi.org/10.1093/nar/gky079">10.1093/nar/gky079</a>
  apa: Nikolic, N., Bergmiller, T., Vandervelde, A., Albanese, T., Gelens, L., &#38;
    Moll, I. (2018). Autoregulation of mazEF expression underlies growth heterogeneity
    in bacterial populations. <i>Nucleic Acids Research</i>. Oxford University Press.
    <a href="https://doi.org/10.1093/nar/gky079">https://doi.org/10.1093/nar/gky079</a>
  chicago: Nikolic, Nela, Tobias Bergmiller, Alexandra Vandervelde, Tanino Albanese,
    Lendert Gelens, and Isabella Moll. “Autoregulation of MazEF Expression Underlies
    Growth Heterogeneity in Bacterial Populations.” <i>Nucleic Acids Research</i>.
    Oxford University Press, 2018. <a href="https://doi.org/10.1093/nar/gky079">https://doi.org/10.1093/nar/gky079</a>.
  ieee: N. Nikolic, T. Bergmiller, A. Vandervelde, T. Albanese, L. Gelens, and I.
    Moll, “Autoregulation of mazEF expression underlies growth heterogeneity in bacterial
    populations,” <i>Nucleic Acids Research</i>, vol. 46, no. 6. Oxford University
    Press, pp. 2918–2931, 2018.
  ista: Nikolic N, Bergmiller T, Vandervelde A, Albanese T, Gelens L, Moll I. 2018.
    Autoregulation of mazEF expression underlies growth heterogeneity in bacterial
    populations. Nucleic Acids Research. 46(6), 2918–2931.
  mla: Nikolic, Nela, et al. “Autoregulation of MazEF Expression Underlies Growth
    Heterogeneity in Bacterial Populations.” <i>Nucleic Acids Research</i>, vol. 46,
    no. 6, Oxford University Press, 2018, pp. 2918–31, doi:<a href="https://doi.org/10.1093/nar/gky079">10.1093/nar/gky079</a>.
  short: N. Nikolic, T. Bergmiller, A. Vandervelde, T. Albanese, L. Gelens, I. Moll,
    Nucleic Acids Research 46 (2018) 2918–2931.
date_created: 2018-12-11T11:46:29Z
date_published: 2018-04-06T00:00:00Z
date_updated: 2024-02-21T13:44:45Z
day: '06'
ddc:
- '576'
department:
- _id: CaGu
doi: 10.1093/nar/gky079
external_id:
  isi:
  - '000429009500021'
file:
- access_level: open_access
  checksum: 3ff4f545c27e11a4cd20ccb30778793e
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:30Z
  date_updated: 2020-07-14T12:46:27Z
  file_id: '5151'
  file_name: IST-2018-971-v1+1_2018_Nikoloc_Autoregulation_of.pdf
  file_size: 5027978
  relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: '        46'
isi: 1
issue: '6'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2918-2931
project:
- _id: 3AC91DDA-15DF-11EA-824D-93A3E7B544D1
  call_identifier: FWF
  name: FWF Open Access Fund
publication: Nucleic Acids Research
publication_status: published
publisher: Oxford University Press
pubrep_id: '971'
quality_controlled: '1'
related_material:
  record:
  - id: '5569'
    relation: popular_science
    status: public
scopus_import: '1'
status: public
title: Autoregulation of mazEF expression underlies growth heterogeneity in bacterial
  populations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 46
year: '2018'
...
---
_id: '44'
abstract:
- lang: eng
  text: 'Recent realization of a kinetically constrained chain of Rydberg atoms by
    Bernien et al., [Nature (London) 551, 579 (2017)] resulted in the observation
    of unusual revivals in the many-body quantum dynamics. In our previous work [C.
    J. Turner et al., Nat. Phys. 14, 745 (2018)], such dynamics was attributed to
    the existence of “quantum scarred” eigenstates in the many-body spectrum of the
    experimentally realized model. Here, we present a detailed study of the eigenstate
    properties of the same model. We find that the majority of the eigenstates exhibit
    anomalous thermalization: the observable expectation values converge to their
    Gibbs ensemble values, but parametrically slower compared to the predictions of
    the eigenstate thermalization hypothesis (ETH). Amidst the thermalizing spectrum,
    we identify nonergodic eigenstates that strongly violate the ETH, whose number
    grows polynomially with system size. Previously, the same eigenstates were identified
    via large overlaps with certain product states, and were used to explain the revivals
    observed in experiment. Here, we find that these eigenstates, in addition to highly
    atypical expectation values of local observables, also exhibit subthermal entanglement
    entropy that scales logarithmically with the system size. Moreover, we identify
    an additional class of quantum scarred eigenstates, and discuss their manifestations
    in the dynamics starting from initial product states. We use forward scattering
    approximation to describe the structure and physical properties of quantum scarred
    eigenstates. Finally, we discuss the stability of quantum scars to various perturbations.
    We observe that quantum scars remain robust when the introduced perturbation is
    compatible with the forward scattering approximation. In contrast, the perturbations
    which most efficiently destroy quantum scars also lead to the restoration of “canonical”
    thermalization.'
acknowledged_ssus:
- _id: ScienComp
article_number: '155134'
article_processing_charge: No
arxiv: 1
author:
- first_name: C J
  full_name: Turner, C J
  last_name: Turner
- first_name: Alexios
  full_name: Michailidis, Alexios
  id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
  last_name: Michailidis
  orcid: 0000-0002-8443-1064
- first_name: D A
  full_name: Abanin, D A
  last_name: Abanin
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Z
  full_name: Papić, Z
  last_name: Papić
citation:
  ama: 'Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. Quantum scarred eigenstates
    in a Rydberg atom chain: Entanglement, breakdown of thermalization, and stability
    to perturbations. <i>Physical Review B</i>. 2018;98(15). doi:<a href="https://doi.org/10.1103/PhysRevB.98.155134">10.1103/PhysRevB.98.155134</a>'
  apa: 'Turner, C. J., Michailidis, A., Abanin, D. A., Serbyn, M., &#38; Papić, Z.
    (2018). Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown
    of thermalization, and stability to perturbations. <i>Physical Review B</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevB.98.155134">https://doi.org/10.1103/PhysRevB.98.155134</a>'
  chicago: 'Turner, C J, Alexios Michailidis, D A Abanin, Maksym Serbyn, and Z Papić.
    “Quantum Scarred Eigenstates in a Rydberg Atom Chain: Entanglement, Breakdown
    of Thermalization, and Stability to Perturbations.” <i>Physical Review B</i>.
    American Physical Society, 2018. <a href="https://doi.org/10.1103/PhysRevB.98.155134">https://doi.org/10.1103/PhysRevB.98.155134</a>.'
  ieee: 'C. J. Turner, A. Michailidis, D. A. Abanin, M. Serbyn, and Z. Papić, “Quantum
    scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization,
    and stability to perturbations,” <i>Physical Review B</i>, vol. 98, no. 15. American
    Physical Society, 2018.'
  ista: 'Turner CJ, Michailidis A, Abanin DA, Serbyn M, Papić Z. 2018. Quantum scarred
    eigenstates in a Rydberg atom chain: Entanglement, breakdown of thermalization,
    and stability to perturbations. Physical Review B. 98(15), 155134.'
  mla: 'Turner, C. J., et al. “Quantum Scarred Eigenstates in a Rydberg Atom Chain:
    Entanglement, Breakdown of Thermalization, and Stability to Perturbations.” <i>Physical
    Review B</i>, vol. 98, no. 15, 155134, American Physical Society, 2018, doi:<a
    href="https://doi.org/10.1103/PhysRevB.98.155134">10.1103/PhysRevB.98.155134</a>.'
  short: C.J. Turner, A. Michailidis, D.A. Abanin, M. Serbyn, Z. Papić, Physical Review
    B 98 (2018).
date_created: 2018-12-11T11:44:19Z
date_published: 2018-10-22T00:00:00Z
date_updated: 2023-10-10T13:28:49Z
day: '22'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.98.155134
external_id:
  arxiv:
  - '1806.10933'
  isi:
  - '000447919100001'
intvolume: '        98'
isi: 1
issue: '15'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1806.10933
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '8010'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Quantum scarred eigenstates in a Rydberg atom chain: Entanglement, breakdown
  of thermalization, and stability to perturbations'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 98
year: '2018'
...
---
_id: '442'
abstract:
- lang: eng
  text: The rapid auxin-triggered growth of the Arabidopsis hypocotyls involves the
    nuclear TIR1/AFB-Aux/IAA signaling and is accompanied by acidification of the
    apoplast and cell walls (Fendrych et al., 2016). Here, we describe in detail the
    method for analysis of the elongation and the TIR1/AFB-Aux/IAA-dependent auxin
    response in hypocotyl segments as well as the determination of relative values
    of the cell wall pH.
acknowledgement: 'This protocol was adapted from Fendrych et al., 2016. This project
  has received funding from the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie Grant Agreement No. 665385, and Austrian
  Science Fund (FWF) [M 2128-B21]. '
article_processing_charge: No
article_type: original
author:
- first_name: Lanxin
  full_name: Li, Lanxin
  id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0002-5607-272X
- first_name: Gabriel
  full_name: Krens, Gabriel
  id: 2B819732-F248-11E8-B48F-1D18A9856A87
  last_name: Krens
  orcid: 0000-0003-4761-5996
- first_name: Matyas
  full_name: Fendrych, Matyas
  id: 43905548-F248-11E8-B48F-1D18A9856A87
  last_name: Fendrych
  orcid: 0000-0002-9767-8699
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Li L, Krens G, Fendrych M, Friml J. Real-time analysis of auxin response, cell
    wall pH and elongation in Arabidopsis thaliana Hypocotyls. <i>Bio-protocol</i>.
    2018;8(1). doi:<a href="https://doi.org/10.21769/BioProtoc.2685">10.21769/BioProtoc.2685</a>
  apa: Li, L., Krens, G., Fendrych, M., &#38; Friml, J. (2018). Real-time analysis
    of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls.
    <i>Bio-Protocol</i>. Bio-protocol. <a href="https://doi.org/10.21769/BioProtoc.2685">https://doi.org/10.21769/BioProtoc.2685</a>
  chicago: Li, Lanxin, Gabriel Krens, Matyas Fendrych, and Jiří Friml. “Real-Time
    Analysis of Auxin Response, Cell Wall PH and Elongation in Arabidopsis Thaliana
    Hypocotyls.” <i>Bio-Protocol</i>. Bio-protocol, 2018. <a href="https://doi.org/10.21769/BioProtoc.2685">https://doi.org/10.21769/BioProtoc.2685</a>.
  ieee: L. Li, G. Krens, M. Fendrych, and J. Friml, “Real-time analysis of auxin response,
    cell wall pH and elongation in Arabidopsis thaliana Hypocotyls,” <i>Bio-protocol</i>,
    vol. 8, no. 1. Bio-protocol, 2018.
  ista: Li L, Krens G, Fendrych M, Friml J. 2018. Real-time analysis of auxin response,
    cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. Bio-protocol.
    8(1).
  mla: Li, Lanxin, et al. “Real-Time Analysis of Auxin Response, Cell Wall PH and
    Elongation in Arabidopsis Thaliana Hypocotyls.” <i>Bio-Protocol</i>, vol. 8, no.
    1, Bio-protocol, 2018, doi:<a href="https://doi.org/10.21769/BioProtoc.2685">10.21769/BioProtoc.2685</a>.
  short: L. Li, G. Krens, M. Fendrych, J. Friml, Bio-Protocol 8 (2018).
date_created: 2018-12-11T11:46:30Z
date_published: 2018-01-05T00:00:00Z
date_updated: 2024-10-29T10:22:43Z
day: '05'
ddc:
- '576'
- '581'
department:
- _id: JiFr
- _id: Bio
doi: 10.21769/BioProtoc.2685
ec_funded: 1
file:
- access_level: open_access
  checksum: 6644ba698206eda32b0abf09128e63e3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:43Z
  date_updated: 2020-07-14T12:46:29Z
  file_id: '5299'
  file_name: IST-2018-970-v1+1_2018_Lanxin_Real-time_analysis.pdf
  file_size: 11352389
  relation: main_file
file_date_updated: 2020-07-14T12:46:29Z
has_accepted_license: '1'
intvolume: '         8'
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: Bio-protocol
publication_identifier:
  eissn:
  - 2331-8325
publication_status: published
publisher: Bio-protocol
publist_id: '7381'
pubrep_id: '970'
quality_controlled: '1'
related_material:
  record:
  - id: '10083'
    relation: dissertation_contains
    status: public
status: public
title: Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis
  thaliana Hypocotyls
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2018'
...
---
_id: '446'
abstract:
- lang: eng
  text: We prove that in Thomas–Fermi–Dirac–von Weizsäcker theory, a nucleus of charge
    Z &gt; 0 can bind at most Z + C electrons, where C is a universal constant. This
    result is obtained through a comparison with Thomas-Fermi theory which, as a by-product,
    gives bounds on the screened nuclear potential and the radius of the minimizer.
    A key ingredient of the proof is a novel technique to control the particles in
    the exterior region, which also applies to the liquid drop model with a nuclear
    background potential.
acknowledgement: "We thank the referee for helpful suggestions that improved the presentation
  of the paper. We also acknowledge partial support by National Science Foundation
  Grant DMS-1363432 (R.L.F.), Austrian Science Fund (FWF) Project Nr. P 27533-N27
  (P.T.N.), CONICYT (Chile) through CONICYT–PCHA/ Doctorado Nacional/2014, and Iniciativa
  Científica Milenio (Chile) through Millenium Nucleus RC–120002 “Física Matemática”
  (H.V.D.B.).\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rupert
  full_name: Frank, Rupert
  last_name: Frank
- first_name: Nam
  full_name: Phan Thanh, Nam
  id: 404092F4-F248-11E8-B48F-1D18A9856A87
  last_name: Phan Thanh
- first_name: Hanne
  full_name: Van Den Bosch, Hanne
  last_name: Van Den Bosch
citation:
  ama: Frank R, Nam P, Van Den Bosch H. The ionization conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker theory. <i>Communications on Pure and Applied Mathematics</i>. 2018;71(3):577-614.
    doi:<a href="https://doi.org/10.1002/cpa.21717">10.1002/cpa.21717</a>
  apa: Frank, R., Nam, P., &#38; Van Den Bosch, H. (2018). The ionization conjecture
    in Thomas–Fermi–Dirac–von Weizsäcker theory. <i>Communications on Pure and Applied
    Mathematics</i>. Wiley-Blackwell. <a href="https://doi.org/10.1002/cpa.21717">https://doi.org/10.1002/cpa.21717</a>
  chicago: Frank, Rupert, Phan Nam, and Hanne Van Den Bosch. “The Ionization Conjecture
    in Thomas–Fermi–Dirac–von Weizsäcker Theory.” <i>Communications on Pure and Applied
    Mathematics</i>. Wiley-Blackwell, 2018. <a href="https://doi.org/10.1002/cpa.21717">https://doi.org/10.1002/cpa.21717</a>.
  ieee: R. Frank, P. Nam, and H. Van Den Bosch, “The ionization conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker theory,” <i>Communications on Pure and Applied Mathematics</i>, vol.
    71, no. 3. Wiley-Blackwell, pp. 577–614, 2018.
  ista: Frank R, Nam P, Van Den Bosch H. 2018. The ionization conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker theory. Communications on Pure and Applied Mathematics. 71(3), 577–614.
  mla: Frank, Rupert, et al. “The Ionization Conjecture in Thomas–Fermi–Dirac–von
    Weizsäcker Theory.” <i>Communications on Pure and Applied Mathematics</i>, vol.
    71, no. 3, Wiley-Blackwell, 2018, pp. 577–614, doi:<a href="https://doi.org/10.1002/cpa.21717">10.1002/cpa.21717</a>.
  short: R. Frank, P. Nam, H. Van Den Bosch, Communications on Pure and Applied Mathematics
    71 (2018) 577–614.
date_created: 2018-12-11T11:46:31Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-09-19T10:09:40Z
day: '01'
department:
- _id: RoSe
doi: 10.1002/cpa.21717
external_id:
  arxiv:
  - '1606.07355'
  isi:
  - '000422675800004'
intvolume: '        71'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1606.07355
month: '03'
oa: 1
oa_version: Preprint
page: 577 - 614
publication: Communications on Pure and Applied Mathematics
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7377'
quality_controlled: '1'
status: public
title: The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 71
year: '2018'
...
---
_id: '448'
abstract:
- lang: eng
  text: Around 150 million years ago, eusocial termites evolved from within the cockroaches,
    50 million years before eusocial Hymenoptera, such as bees and ants, appeared.
    Here, we report the 2-Gb genome of the German cockroach, Blattella germanica,
    and the 1.3-Gb genome of the drywood termite Cryptotermes secundus. We show evolutionary
    signatures of termite eusociality by comparing the genomes and transcriptomes
    of three termites and the cockroach against the background of 16 other eusocial
    and non-eusocial insects. Dramatic adaptive changes in genes underlying the production
    and perception of pheromones confirm the importance of chemical communication
    in the termites. These are accompanied by major changes in gene regulation and
    the molecular evolution of caste determination. Many of these results parallel
    molecular mechanisms of eusocial evolution in Hymenoptera. However, the specific
    solutions are remarkably different, thus revealing a striking case of convergence
    in one of the major evolutionary transitions in biological complexity.
acknowledgement: We thank O. Niehuis for allowing use of the unpublished E. danica
  genome, J. Gadau and C. Smith for comments and advice on the manuscript, and J.
  Schmitz for assistance with analyses and proofreading the manuscript. J.K. thanks
  Charles Darwin University (Australia), especially S. Garnett and the Horticulture
  and Aquaculture team, for providing logistic support to collect C. secundus. The
  Parks and Wildlife Commission, Northern Territory, the Department of the Environment,
  Water, Heritage and the Arts gave permission to collect (Permit number 36401) and
  export (Permit WT2010-6997) the termites. USDA is an equal opportunity provider
  and employer. M.C.H. and E.J. are supported by DFG grant BO2544/11-1 to E.B.-B.
  J.K. is supported by University of Osnabrück and DFG grant KO1895/16-1. X.B. and
  M.-D.P. are supported by Spanish Ministerio de Economía y Competitividad (CGL2012-36251
  and CGL2015-64727-P to X.B., and CGL2016-76011-R to M.-D.P.), including FEDER funds,
  and by Catalan Government (2014 SGR 619). C.S. is supported by grants from the US
  Department of Housing and Urban Development (NCHHU-0017-13), the National Science
  Foundation (IOS-1557864), the Alfred P. Sloan Foundation (2013-5-35 MBE), the National
  Institute of Environmental Health Sciences (P30ES025128) to the Center for Human
  Health and the Environment, and the Blanton J. Whitmire Endowment. M.P. is supported
  by a Villum Kann Rasmussen Young Investigator Fellowship (VKR10101).
article_processing_charge: No
author:
- first_name: Mark
  full_name: Harrison, Mark
  last_name: Harrison
- first_name: Evelien
  full_name: Jongepier, Evelien
  last_name: Jongepier
- first_name: Hugh
  full_name: Robertson, Hugh
  last_name: Robertson
- first_name: Nicolas
  full_name: Arning, Nicolas
  last_name: Arning
- first_name: Tristan
  full_name: Bitard Feildel, Tristan
  last_name: Bitard Feildel
- first_name: Hsu
  full_name: Chao, Hsu
  last_name: Chao
- first_name: Christopher
  full_name: Childers, Christopher
  last_name: Childers
- first_name: Huyen
  full_name: Dinh, Huyen
  last_name: Dinh
- first_name: Harshavardhan
  full_name: Doddapaneni, Harshavardhan
  last_name: Doddapaneni
- first_name: Shannon
  full_name: Dugan, Shannon
  last_name: Dugan
- first_name: Johannes
  full_name: Gowin, Johannes
  last_name: Gowin
- first_name: Carolin
  full_name: Greiner, Carolin
  last_name: Greiner
- first_name: Yi
  full_name: Han, Yi
  last_name: Han
- first_name: Haofu
  full_name: Hu, Haofu
  last_name: Hu
- first_name: Daniel
  full_name: Hughes, Daniel
  last_name: Hughes
- first_name: Ann K
  full_name: Huylmans, Ann K
  id: 4C0A3874-F248-11E8-B48F-1D18A9856A87
  last_name: Huylmans
  orcid: 0000-0001-8871-4961
- first_name: Karsten
  full_name: Kemena, Karsten
  last_name: Kemena
- first_name: Lukas
  full_name: Kremer, Lukas
  last_name: Kremer
- first_name: Sandra
  full_name: Lee, Sandra
  last_name: Lee
- first_name: Alberto
  full_name: López Ezquerra, Alberto
  last_name: López Ezquerra
- first_name: Ludovic
  full_name: Mallet, Ludovic
  last_name: Mallet
- first_name: Jose
  full_name: Monroy Kuhn, Jose
  last_name: Monroy Kuhn
- first_name: Annabell
  full_name: Moser, Annabell
  last_name: Moser
- first_name: Shwetha
  full_name: Murali, Shwetha
  last_name: Murali
- first_name: Donna
  full_name: Muzny, Donna
  last_name: Muzny
- first_name: Saria
  full_name: Otani, Saria
  last_name: Otani
- first_name: Maria
  full_name: Piulachs, Maria
  last_name: Piulachs
- first_name: Monica
  full_name: Poelchau, Monica
  last_name: Poelchau
- first_name: Jiaxin
  full_name: Qu, Jiaxin
  last_name: Qu
- first_name: Florentine
  full_name: Schaub, Florentine
  last_name: Schaub
- first_name: Ayako
  full_name: Wada Katsumata, Ayako
  last_name: Wada Katsumata
- first_name: Kim
  full_name: Worley, Kim
  last_name: Worley
- first_name: Qiaolin
  full_name: Xie, Qiaolin
  last_name: Xie
- first_name: Guillem
  full_name: Ylla, Guillem
  last_name: Ylla
- first_name: Michael
  full_name: Poulsen, Michael
  last_name: Poulsen
- first_name: Richard
  full_name: Gibbs, Richard
  last_name: Gibbs
- first_name: Coby
  full_name: Schal, Coby
  last_name: Schal
- first_name: Stephen
  full_name: Richards, Stephen
  last_name: Richards
- first_name: Xavier
  full_name: Belles, Xavier
  last_name: Belles
- first_name: Judith
  full_name: Korb, Judith
  last_name: Korb
- first_name: Erich
  full_name: Bornberg Bauer, Erich
  last_name: Bornberg Bauer
citation:
  ama: Harrison M, Jongepier E, Robertson H, et al. Hemimetabolous genomes reveal
    molecular basis of termite eusociality. <i>Nature Ecology and Evolution</i>. 2018;2(3):557-566.
    doi:<a href="https://doi.org/10.1038/s41559-017-0459-1">10.1038/s41559-017-0459-1</a>
  apa: Harrison, M., Jongepier, E., Robertson, H., Arning, N., Bitard Feildel, T.,
    Chao, H., … Bornberg Bauer, E. (2018). Hemimetabolous genomes reveal molecular
    basis of termite eusociality. <i>Nature Ecology and Evolution</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41559-017-0459-1">https://doi.org/10.1038/s41559-017-0459-1</a>
  chicago: Harrison, Mark, Evelien Jongepier, Hugh Robertson, Nicolas Arning, Tristan
    Bitard Feildel, Hsu Chao, Christopher Childers, et al. “Hemimetabolous Genomes
    Reveal Molecular Basis of Termite Eusociality.” <i>Nature Ecology and Evolution</i>.
    Springer Nature, 2018. <a href="https://doi.org/10.1038/s41559-017-0459-1">https://doi.org/10.1038/s41559-017-0459-1</a>.
  ieee: M. Harrison <i>et al.</i>, “Hemimetabolous genomes reveal molecular basis
    of termite eusociality,” <i>Nature Ecology and Evolution</i>, vol. 2, no. 3. Springer
    Nature, pp. 557–566, 2018.
  ista: Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H,
    Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes
    D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy
    Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub
    F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards
    S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular
    basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
  mla: Harrison, Mark, et al. “Hemimetabolous Genomes Reveal Molecular Basis of Termite
    Eusociality.” <i>Nature Ecology and Evolution</i>, vol. 2, no. 3, Springer Nature,
    2018, pp. 557–66, doi:<a href="https://doi.org/10.1038/s41559-017-0459-1">10.1038/s41559-017-0459-1</a>.
  short: M. Harrison, E. Jongepier, H. Robertson, N. Arning, T. Bitard Feildel, H.
    Chao, C. Childers, H. Dinh, H. Doddapaneni, S. Dugan, J. Gowin, C. Greiner, Y.
    Han, H. Hu, D. Hughes, A.K. Huylmans, K. Kemena, L. Kremer, S. Lee, A. López Ezquerra,
    L. Mallet, J. Monroy Kuhn, A. Moser, S. Murali, D. Muzny, S. Otani, M. Piulachs,
    M. Poelchau, J. Qu, F. Schaub, A. Wada Katsumata, K. Worley, Q. Xie, G. Ylla,
    M. Poulsen, R. Gibbs, C. Schal, S. Richards, X. Belles, J. Korb, E. Bornberg Bauer,
    Nature Ecology and Evolution 2 (2018) 557–566.
date_created: 2018-12-11T11:46:32Z
date_published: 2018-02-05T00:00:00Z
date_updated: 2023-09-11T14:10:57Z
day: '05'
ddc:
- '576'
department:
- _id: BeVi
doi: 10.1038/s41559-017-0459-1
external_id:
  isi:
  - '000426559600026'
file:
- access_level: open_access
  checksum: 874953136ac125e65f37971d3cabc5b7
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:08Z
  date_updated: 2020-07-14T12:46:30Z
  file_id: '4731'
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  file_size: 3730583
  relation: main_file
file_date_updated: 2020-07-14T12:46:30Z
has_accepted_license: '1'
intvolume: '         2'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 557-566
publication: Nature Ecology and Evolution
publication_status: published
publisher: Springer Nature
publist_id: '7375'
pubrep_id: '969'
quality_controlled: '1'
related_material:
  record:
  - id: '9841'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Hemimetabolous genomes reveal molecular basis of termite eusociality
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2
year: '2018'
...
---
_id: '449'
abstract:
- lang: eng
  text: Auxin is unique among plant hormones due to its directional transport that
    is mediated by the polarly distributed PIN auxin transporters at the plasma membrane.
    The canalization hypothesis proposes that the auxin feedback on its polar flow
    is a crucial, plant-specific mechanism mediating multiple self-organizing developmental
    processes. Here, we used the auxin effect on the PIN polar localization in Arabidopsis
    thaliana roots as a proxy for the auxin feedback on the PIN polarity during canalization.
    We performed microarray experiments to find regulators of this process that act
    downstream of auxin. We identified genes that were transcriptionally regulated
    by auxin in an AXR3/IAA17- and ARF7/ARF19-dependent manner. Besides the known
    components of the PIN polarity, such as PID and PIP5K kinases, a number of potential
    new regulators were detected, among which the WRKY23 transcription factor, which
    was characterized in more detail. Gain- and loss-of-function mutants confirmed
    a role for WRKY23 in mediating the auxin effect on the PIN polarity. Accordingly,
    processes requiring auxin-mediated PIN polarity rearrangements, such as vascular
    tissue development during leaf venation, showed a higher WRKY23 expression and
    required the WRKY23 activity. Our results provide initial insights into the auxin
    transcriptional network acting upstream of PIN polarization and, potentially,
    canalization-mediated plant development.
article_processing_charge: Yes
author:
- first_name: Tomas
  full_name: Prat, Tomas
  id: 3DA3BFEE-F248-11E8-B48F-1D18A9856A87
  last_name: Prat
- first_name: Jakub
  full_name: Hajny, Jakub
  id: 4800CC20-F248-11E8-B48F-1D18A9856A87
  last_name: Hajny
  orcid: 0000-0003-2140-7195
- first_name: Wim
  full_name: Grunewald, Wim
  last_name: Grunewald
- first_name: Mina K
  full_name: Vasileva, Mina K
  id: 3407EB18-F248-11E8-B48F-1D18A9856A87
  last_name: Vasileva
- first_name: Gergely
  full_name: Molnar, Gergely
  id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
  last_name: Molnar
- first_name: Ricardo
  full_name: Tejos, Ricardo
  last_name: Tejos
- first_name: Markus
  full_name: Schmid, Markus
  last_name: Schmid
- first_name: Michael
  full_name: Sauer, Michael
  last_name: Sauer
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Prat T, Hajny J, Grunewald W, et al. WRKY23 is a component of the transcriptional
    network mediating auxin feedback on PIN polarity. <i>PLoS Genetics</i>. 2018;14(1).
    doi:<a href="https://doi.org/10.1371/journal.pgen.1007177">10.1371/journal.pgen.1007177</a>
  apa: Prat, T., Hajny, J., Grunewald, W., Vasileva, M. K., Molnar, G., Tejos, R.,
    … Friml, J. (2018). WRKY23 is a component of the transcriptional network mediating
    auxin feedback on PIN polarity. <i>PLoS Genetics</i>. Public Library of Science.
    <a href="https://doi.org/10.1371/journal.pgen.1007177">https://doi.org/10.1371/journal.pgen.1007177</a>
  chicago: Prat, Tomas, Jakub Hajny, Wim Grunewald, Mina K Vasileva, Gergely Molnar,
    Ricardo Tejos, Markus Schmid, Michael Sauer, and Jiří Friml. “WRKY23 Is a Component
    of the Transcriptional Network Mediating Auxin Feedback on PIN Polarity.” <i>PLoS
    Genetics</i>. Public Library of Science, 2018. <a href="https://doi.org/10.1371/journal.pgen.1007177">https://doi.org/10.1371/journal.pgen.1007177</a>.
  ieee: T. Prat <i>et al.</i>, “WRKY23 is a component of the transcriptional network
    mediating auxin feedback on PIN polarity,” <i>PLoS Genetics</i>, vol. 14, no.
    1. Public Library of Science, 2018.
  ista: Prat T, Hajny J, Grunewald W, Vasileva MK, Molnar G, Tejos R, Schmid M, Sauer
    M, Friml J. 2018. WRKY23 is a component of the transcriptional network mediating
    auxin feedback on PIN polarity. PLoS Genetics. 14(1).
  mla: Prat, Tomas, et al. “WRKY23 Is a Component of the Transcriptional Network Mediating
    Auxin Feedback on PIN Polarity.” <i>PLoS Genetics</i>, vol. 14, no. 1, Public
    Library of Science, 2018, doi:<a href="https://doi.org/10.1371/journal.pgen.1007177">10.1371/journal.pgen.1007177</a>.
  short: T. Prat, J. Hajny, W. Grunewald, M.K. Vasileva, G. Molnar, R. Tejos, M. Schmid,
    M. Sauer, J. Friml, PLoS Genetics 14 (2018).
date_created: 2018-12-11T11:46:32Z
date_published: 2018-01-29T00:00:00Z
date_updated: 2025-05-07T11:12:28Z
day: '29'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1371/journal.pgen.1007177
ec_funded: 1
external_id:
  isi:
  - '000423718600034'
file:
- access_level: open_access
  checksum: 0276d66788ec076f4924164a39e6a712
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:52Z
  date_updated: 2020-07-14T12:46:30Z
  file_id: '4843'
  file_name: IST-2018-967-v1+1_journal.pgen.1007177.pdf
  file_size: 24709062
  relation: main_file
file_date_updated: 2020-07-14T12:46:30Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '282300'
  name: Polarity and subcellular dynamics in plants
publication: PLoS Genetics
publication_status: published
publisher: Public Library of Science
publist_id: '7373'
pubrep_id: '967'
quality_controlled: '1'
related_material:
  record:
  - id: '1127'
    relation: dissertation_contains
    status: public
  - id: '7172'
    relation: dissertation_contains
    status: public
  - id: '8822'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: WRKY23 is a component of the transcriptional network mediating auxin feedback
  on PIN polarity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 14
year: '2018'
...
---
_id: '454'
abstract:
- lang: eng
  text: Direct reciprocity is a mechanism for cooperation among humans. Many of our
    daily interactions are repeated. We interact repeatedly with our family, friends,
    colleagues, members of the local and even global community. In the theory of repeated
    games, it is a tacit assumption that the various games that a person plays simultaneously
    have no effect on each other. Here we introduce a general framework that allows
    us to analyze “crosstalk” between a player’s concurrent games. In the presence
    of crosstalk, the action a person experiences in one game can alter the person’s
    decision in another. We find that crosstalk impedes the maintenance of cooperation
    and requires stronger levels of forgiveness. The magnitude of the effect depends
    on the population structure. In more densely connected social groups, crosstalk
    has a stronger effect. A harsh retaliator, such as Tit-for-Tat, is unable to counteract
    crosstalk. The crosstalk framework provides a unified interpretation of direct
    and upstream reciprocity in the context of repeated games.
acknowledgement: "This work was supported by the European Research Council (ERC) start
  grant 279307: Graph Games (C.K.), Austrian Science Fund (FWF) grant no P23499-N23
  (C.K.), FWF\r\nNFN grant no S11407-N23 RiSE/SHiNE (C.K.), Office of Naval Research
  grant N00014-16-1-2914 (M.A.N.), National Cancer Institute grant CA179991 (M.A.N.)
  and by the John Templeton Foundation. J.G.R. is supported by an Erwin Schrödinger
  fellowship\r\n(Austrian Science Fund FWF J-3996). C.H. acknowledges generous support
  from the\r\nISTFELLOW program. The Program for Evolutionary Dynamics is supported
  in part by\r\na gift from B Wu and Eric Larson."
article_number: '555'
article_processing_charge: No
author:
- first_name: Johannes
  full_name: Reiter, Johannes
  id: 4A918E98-F248-11E8-B48F-1D18A9856A87
  last_name: Reiter
  orcid: 0000-0002-0170-7353
- first_name: Christian
  full_name: Hilbe, Christian
  id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
  last_name: Hilbe
  orcid: 0000-0001-5116-955X
- first_name: David
  full_name: Rand, David
  last_name: Rand
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. Crosstalk in concurrent repeated
    games impedes direct reciprocity and requires stronger levels of forgiveness.
    <i>Nature Communications</i>. 2018;9(1). doi:<a href="https://doi.org/10.1038/s41467-017-02721-8">10.1038/s41467-017-02721-8</a>
  apa: Reiter, J., Hilbe, C., Rand, D., Chatterjee, K., &#38; Nowak, M. (2018). Crosstalk
    in concurrent repeated games impedes direct reciprocity and requires stronger
    levels of forgiveness. <i>Nature Communications</i>. Nature Publishing Group.
    <a href="https://doi.org/10.1038/s41467-017-02721-8">https://doi.org/10.1038/s41467-017-02721-8</a>
  chicago: Reiter, Johannes, Christian Hilbe, David Rand, Krishnendu Chatterjee, and
    Martin Nowak. “Crosstalk in Concurrent Repeated Games Impedes Direct Reciprocity
    and Requires Stronger Levels of Forgiveness.” <i>Nature Communications</i>. Nature
    Publishing Group, 2018. <a href="https://doi.org/10.1038/s41467-017-02721-8">https://doi.org/10.1038/s41467-017-02721-8</a>.
  ieee: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, and M. Nowak, “Crosstalk in concurrent
    repeated games impedes direct reciprocity and requires stronger levels of forgiveness,”
    <i>Nature Communications</i>, vol. 9, no. 1. Nature Publishing Group, 2018.
  ista: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. 2018. Crosstalk in concurrent
    repeated games impedes direct reciprocity and requires stronger levels of forgiveness.
    Nature Communications. 9(1), 555.
  mla: Reiter, Johannes, et al. “Crosstalk in Concurrent Repeated Games Impedes Direct
    Reciprocity and Requires Stronger Levels of Forgiveness.” <i>Nature Communications</i>,
    vol. 9, no. 1, 555, Nature Publishing Group, 2018, doi:<a href="https://doi.org/10.1038/s41467-017-02721-8">10.1038/s41467-017-02721-8</a>.
  short: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, M. Nowak, Nature Communications
    9 (2018).
date_created: 2018-12-11T11:46:34Z
date_published: 2018-02-07T00:00:00Z
date_updated: 2023-09-11T12:51:03Z
day: '07'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.1038/s41467-017-02721-8
ec_funded: 1
external_id:
  isi:
  - '000424318200001'
file:
- access_level: open_access
  checksum: b6b90367545b4c615891c960ab0567f1
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:18Z
  date_updated: 2020-07-14T12:46:31Z
  file_id: '4741'
  file_name: IST-2018-964-v1+1_2018_Hilbe_Crosstalk_in.pdf
  file_size: 843646
  relation: main_file
file_date_updated: 2020-07-14T12:46:31Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '7368'
pubrep_id: '964'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Crosstalk in concurrent repeated games impedes direct reciprocity and requires
  stronger levels of forgiveness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2018'
...
---
_id: '455'
abstract:
- lang: eng
  text: The derivation of effective evolution equations is central to the study of
    non-stationary quantum many-body systems, and widely used in contexts such as
    superconductivity, nuclear physics, Bose–Einstein condensation and quantum chemistry.
    We reformulate the Dirac–Frenkel approximation principle in terms of reduced density
    matrices and apply it to fermionic and bosonic many-body systems. We obtain the
    Bogoliubov–de Gennes and Hartree–Fock–Bogoliubov equations, respectively. While
    we do not prove quantitative error estimates, our formulation does show that the
    approximation is optimal within the class of quasifree states. Furthermore, we
    prove well-posedness of the Bogoliubov–de Gennes equations in energy space and
    discuss conserved quantities
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). The authors acknowledge support by ERC Advanced Grant 321029 and
  by VILLUM FONDEN via the QMATH Centre of Excellence (Grant No. 10059). The authors
  would like to thank Sébastien Breteaux, Enno Lenzmann, Mathieu Lewin and Jochen
  Schmid for comments and discussions about well-posedness of the Bogoliubov–de Gennes
  equations.
alternative_title:
- Annales Henri Poincare
article_processing_charge: No
author:
- first_name: Niels P
  full_name: Benedikter, Niels P
  id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
  last_name: Benedikter
  orcid: 0000-0002-1071-6091
- first_name: Jérémy
  full_name: Sok, Jérémy
  last_name: Sok
- first_name: Jan
  full_name: Solovej, Jan
  last_name: Solovej
citation:
  ama: Benedikter NP, Sok J, Solovej J. The Dirac–Frenkel principle for reduced density
    matrices and the Bogoliubov–de Gennes equations. <i>Annales Henri Poincare</i>.
    2018;19(4):1167-1214. doi:<a href="https://doi.org/10.1007/s00023-018-0644-z">10.1007/s00023-018-0644-z</a>
  apa: Benedikter, N. P., Sok, J., &#38; Solovej, J. (2018). The Dirac–Frenkel principle
    for reduced density matrices and the Bogoliubov–de Gennes equations. <i>Annales
    Henri Poincare</i>. Birkhäuser. <a href="https://doi.org/10.1007/s00023-018-0644-z">https://doi.org/10.1007/s00023-018-0644-z</a>
  chicago: Benedikter, Niels P, Jérémy Sok, and Jan Solovej. “The Dirac–Frenkel Principle
    for Reduced Density Matrices and the Bogoliubov–de Gennes Equations.” <i>Annales
    Henri Poincare</i>. Birkhäuser, 2018. <a href="https://doi.org/10.1007/s00023-018-0644-z">https://doi.org/10.1007/s00023-018-0644-z</a>.
  ieee: N. P. Benedikter, J. Sok, and J. Solovej, “The Dirac–Frenkel principle for
    reduced density matrices and the Bogoliubov–de Gennes equations,” <i>Annales Henri
    Poincare</i>, vol. 19, no. 4. Birkhäuser, pp. 1167–1214, 2018.
  ista: Benedikter NP, Sok J, Solovej J. 2018. The Dirac–Frenkel principle for reduced
    density matrices and the Bogoliubov–de Gennes equations. Annales Henri Poincare.
    19(4), 1167–1214.
  mla: Benedikter, Niels P., et al. “The Dirac–Frenkel Principle for Reduced Density
    Matrices and the Bogoliubov–de Gennes Equations.” <i>Annales Henri Poincare</i>,
    vol. 19, no. 4, Birkhäuser, 2018, pp. 1167–214, doi:<a href="https://doi.org/10.1007/s00023-018-0644-z">10.1007/s00023-018-0644-z</a>.
  short: N.P. Benedikter, J. Sok, J. Solovej, Annales Henri Poincare 19 (2018) 1167–1214.
date_created: 2018-12-11T11:46:34Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2023-09-19T10:07:41Z
day: '01'
ddc:
- '510'
- '539'
department:
- _id: RoSe
doi: 10.1007/s00023-018-0644-z
external_id:
  isi:
  - '000427578900006'
file:
- access_level: open_access
  checksum: 883eeccba8384ad7fcaa28761d99a0fa
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:11:57Z
  date_updated: 2020-07-14T12:46:31Z
  file_id: '4914'
  file_name: IST-2018-993-v1+1_2018_Benedikter_Dirac.pdf
  file_size: 923252
  relation: main_file
file_date_updated: 2020-07-14T12:46:31Z
has_accepted_license: '1'
intvolume: '        19'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1167 - 1214
publication: Annales Henri Poincare
publication_status: published
publisher: Birkhäuser
publist_id: '7367'
pubrep_id: '993'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de
  Gennes equations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 19
year: '2018'
...
---
_id: '456'
abstract:
- lang: eng
  text: 'Inhibition of the endoplasmic reticulum stress pathway may hold the key to
    Zika virus-associated microcephaly treatment. '
article_number: eaar7514
author:
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
citation:
  ama: 'Novarino G. Zika-associated microcephaly: Reduce the stress and race for the
    treatment. <i>Science Translational Medicine</i>. 2018;10(423). doi:<a href="https://doi.org/10.1126/scitranslmed.aar7514">10.1126/scitranslmed.aar7514</a>'
  apa: 'Novarino, G. (2018). Zika-associated microcephaly: Reduce the stress and race
    for the treatment. <i>Science Translational Medicine</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/scitranslmed.aar7514">https://doi.org/10.1126/scitranslmed.aar7514</a>'
  chicago: 'Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race
    for the Treatment.” <i>Science Translational Medicine</i>. American Association
    for the Advancement of Science, 2018. <a href="https://doi.org/10.1126/scitranslmed.aar7514">https://doi.org/10.1126/scitranslmed.aar7514</a>.'
  ieee: 'G. Novarino, “Zika-associated microcephaly: Reduce the stress and race for
    the treatment,” <i>Science Translational Medicine</i>, vol. 10, no. 423. American
    Association for the Advancement of Science, 2018.'
  ista: 'Novarino G. 2018. Zika-associated microcephaly: Reduce the stress and race
    for the treatment. Science Translational Medicine. 10(423), eaar7514.'
  mla: 'Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race
    for the Treatment.” <i>Science Translational Medicine</i>, vol. 10, no. 423, eaar7514,
    American Association for the Advancement of Science, 2018, doi:<a href="https://doi.org/10.1126/scitranslmed.aar7514">10.1126/scitranslmed.aar7514</a>.'
  short: G. Novarino, Science Translational Medicine 10 (2018).
date_created: 2018-12-11T11:46:34Z
date_published: 2018-01-10T00:00:00Z
date_updated: 2021-01-12T07:59:42Z
day: '10'
department:
- _id: GaNo
doi: 10.1126/scitranslmed.aar7514
intvolume: '        10'
issue: '423'
language:
- iso: eng
month: '01'
oa_version: None
publication: Science Translational Medicine
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '7365'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Zika-associated microcephaly: Reduce the stress and race for the treatment'
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2018'
...
---
_id: '457'
abstract:
- lang: eng
  text: Temperate bacteriophages integrate in bacterial genomes as prophages and represent
    an important source of genetic variation for bacterial evolution, frequently transmitting
    fitness-augmenting genes such as toxins responsible for virulence of major pathogens.
    However, only a fraction of bacteriophage infections are lysogenic and lead to
    prophage acquisition, whereas the majority are lytic and kill the infected bacteria.
    Unless able to discriminate lytic from lysogenic infections, mechanisms of immunity
    to bacteriophages are expected to act as a double-edged sword and increase the
    odds of survival at the cost of depriving bacteria of potentially beneficial prophages.
    We show that although restriction-modification systems as mechanisms of innate
    immunity prevent both lytic and lysogenic infections indiscriminately in individual
    bacteria, they increase the number of prophage-acquiring individuals at the population
    level. We find that this counterintuitive result is a consequence of phage-host
    population dynamics, in which restriction-modification systems delay infection
    onset until bacteria reach densities at which the probability of lysogeny increases.
    These results underscore the importance of population-level dynamics as a key
    factor modulating costs and benefits of immunity to temperate bacteriophages
article_processing_charge: No
author:
- first_name: Maros
  full_name: Pleska, Maros
  id: 4569785E-F248-11E8-B48F-1D18A9856A87
  last_name: Pleska
  orcid: 0000-0001-7460-7479
- first_name: Moritz
  full_name: Lang, Moritz
  id: 29E0800A-F248-11E8-B48F-1D18A9856A87
  last_name: Lang
- first_name: Dominik
  full_name: Refardt, Dominik
  last_name: Refardt
- first_name: Bruce
  full_name: Levin, Bruce
  last_name: Levin
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
citation:
  ama: Pleska M, Lang M, Refardt D, Levin B, Guet CC. Phage-host population dynamics
    promotes prophage acquisition in bacteria with innate immunity. <i>Nature Ecology
    and Evolution</i>. 2018;2(2):359-366. doi:<a href="https://doi.org/10.1038/s41559-017-0424-z">10.1038/s41559-017-0424-z</a>
  apa: Pleska, M., Lang, M., Refardt, D., Levin, B., &#38; Guet, C. C. (2018). Phage-host
    population dynamics promotes prophage acquisition in bacteria with innate immunity.
    <i>Nature Ecology and Evolution</i>. Springer Nature. <a href="https://doi.org/10.1038/s41559-017-0424-z">https://doi.org/10.1038/s41559-017-0424-z</a>
  chicago: Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet.
    “Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with
    Innate Immunity.” <i>Nature Ecology and Evolution</i>. Springer Nature, 2018.
    <a href="https://doi.org/10.1038/s41559-017-0424-z">https://doi.org/10.1038/s41559-017-0424-z</a>.
  ieee: M. Pleska, M. Lang, D. Refardt, B. Levin, and C. C. Guet, “Phage-host population
    dynamics promotes prophage acquisition in bacteria with innate immunity,” <i>Nature
    Ecology and Evolution</i>, vol. 2, no. 2. Springer Nature, pp. 359–366, 2018.
  ista: Pleska M, Lang M, Refardt D, Levin B, Guet CC. 2018. Phage-host population
    dynamics promotes prophage acquisition in bacteria with innate immunity. Nature
    Ecology and Evolution. 2(2), 359–366.
  mla: Pleska, Maros, et al. “Phage-Host Population Dynamics Promotes Prophage Acquisition
    in Bacteria with Innate Immunity.” <i>Nature Ecology and Evolution</i>, vol. 2,
    no. 2, Springer Nature, 2018, pp. 359–66, doi:<a href="https://doi.org/10.1038/s41559-017-0424-z">10.1038/s41559-017-0424-z</a>.
  short: M. Pleska, M. Lang, D. Refardt, B. Levin, C.C. Guet, Nature Ecology and Evolution
    2 (2018) 359–366.
date_created: 2018-12-11T11:46:35Z
date_published: 2018-02-01T00:00:00Z
date_updated: 2023-09-15T12:04:57Z
day: '01'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1038/s41559-017-0424-z
ec_funded: 1
external_id:
  isi:
  - '000426516400027'
intvolume: '         2'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 359 - 366
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 251BCBEC-B435-11E9-9278-68D0E5697425
  grant_number: RGY0079/2011
  name: Multi-Level Conflicts in Evolutionary Dynamics of Restriction-Modification
    Systems (HFSP Young investigators' grant)
- _id: 251D65D8-B435-11E9-9278-68D0E5697425
  grant_number: '24210'
  name: Effects of Stochasticity on the Function of Restriction-Modi cation Systems
    at the Single-Cell Level (DOC Fellowship)
publication: Nature Ecology and Evolution
publication_status: published
publisher: Springer Nature
publist_id: '7364'
quality_controlled: '1'
related_material:
  record:
  - id: '202'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Phage-host population dynamics promotes prophage acquisition in bacteria with
  innate immunity
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2
year: '2018'
...
---
_id: '458'
abstract:
- lang: eng
  text: We consider congruences of straight lines in a plane with the combinatorics
    of the square grid, with all elementary quadrilaterals possessing an incircle.
    It is shown that all the vertices of such nets (we call them incircular or IC-nets)
    lie on confocal conics. Our main new results are on checkerboard IC-nets in the
    plane. These are congruences of straight lines in the plane with the combinatorics
    of the square grid, combinatorially colored as a checkerboard, such that all black
    coordinate quadrilaterals possess inscribed circles. We show how this larger class
    of IC-nets appears quite naturally in Laguerre geometry of oriented planes and
    spheres and leads to new remarkable incidence theorems. Most of our results are
    valid in hyperbolic and spherical geometries as well. We present also generalizations
    in spaces of higher dimension, called checkerboard IS-nets. The construction of
    these nets is based on a new 9 inspheres incidence theorem.
acknowledgement: DFG Collaborative Research Center TRR 109 “Discretization in Geometry
  and Dynamics”; People Programme (Marie Curie Actions) of the European Union’s Seventh
  Framework Programme (FP7/2007-2013) REA grant agreement n◦[291734]
article_processing_charge: No
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Alexander
  full_name: Bobenko, Alexander
  last_name: Bobenko
citation:
  ama: Akopyan A, Bobenko A. Incircular nets and confocal conics. <i>Transactions
    of the American Mathematical Society</i>. 2018;370(4):2825-2854. doi:<a href="https://doi.org/10.1090/tran/7292">10.1090/tran/7292</a>
  apa: Akopyan, A., &#38; Bobenko, A. (2018). Incircular nets and confocal conics.
    <i>Transactions of the American Mathematical Society</i>. American Mathematical
    Society. <a href="https://doi.org/10.1090/tran/7292">https://doi.org/10.1090/tran/7292</a>
  chicago: Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal
    Conics.” <i>Transactions of the American Mathematical Society</i>. American Mathematical
    Society, 2018. <a href="https://doi.org/10.1090/tran/7292">https://doi.org/10.1090/tran/7292</a>.
  ieee: A. Akopyan and A. Bobenko, “Incircular nets and confocal conics,” <i>Transactions
    of the American Mathematical Society</i>, vol. 370, no. 4. American Mathematical
    Society, pp. 2825–2854, 2018.
  ista: Akopyan A, Bobenko A. 2018. Incircular nets and confocal conics. Transactions
    of the American Mathematical Society. 370(4), 2825–2854.
  mla: Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal Conics.”
    <i>Transactions of the American Mathematical Society</i>, vol. 370, no. 4, American
    Mathematical Society, 2018, pp. 2825–54, doi:<a href="https://doi.org/10.1090/tran/7292">10.1090/tran/7292</a>.
  short: A. Akopyan, A. Bobenko, Transactions of the American Mathematical Society
    370 (2018) 2825–2854.
date_created: 2018-12-11T11:46:35Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2023-09-11T14:19:12Z
day: '01'
department:
- _id: HeEd
doi: 10.1090/tran/7292
ec_funded: 1
external_id:
  isi:
  - '000423197800019'
intvolume: '       370'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.04637
month: '04'
oa: 1
oa_version: Preprint
page: 2825 - 2854
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Transactions of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '7363'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Incircular nets and confocal conics
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 370
year: '2018'
...
---
_id: '46'
abstract:
- lang: eng
  text: We analyze a disordered central spin model, where a central spin interacts
    equally with each spin in a periodic one-dimensional (1D) random-field Heisenberg
    chain. If the Heisenberg chain is initially in the many-body localized (MBL) phase,
    we find that the coupling to the central spin suffices to delocalize the chain
    for a substantial range of coupling strengths. We calculate the phase diagram
    of the model and identify the phase boundary between the MBL and ergodic phase.
    Within the localized phase, the central spin significantly enhances the rate of
    the logarithmic entanglement growth and its saturation value. We attribute the
    increase in entanglement entropy to a nonextensive enhancement of magnetization
    fluctuations induced by the central spin. Finally, we demonstrate that correlation
    functions of the central spin can be utilized to distinguish between MBL and ergodic
    phases of the 1D chain. Hence, we propose the use of a central spin as a possible
    experimental probe to identify the MBL phase.
acknowledgement: F.P. acknowledges the sup- port of the DFG Research Unit FOR 1807
  through Grants No. PO 1370/2-1 and No. TRR80, the Nanosystems Initiative Munich
  (NIM) by the German Excellence Initiative, and the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation programme (Grant
  Agreement No. 771537). N.Y.Y. acknowledges support from the NSF (PHY-1654740), the
  ARO STIR program, and a Google research award.
article_number: '161122'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Daniel
  full_name: Hetterich, Daniel
  last_name: Hetterich
- first_name: Norman
  full_name: Yao, Norman
  last_name: Yao
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Frank
  full_name: Pollmann, Frank
  last_name: Pollmann
- first_name: Björn
  full_name: Trauzettel, Björn
  last_name: Trauzettel
citation:
  ama: Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. Detection and characterization
    of many-body localization in central spin models. <i>Physical Review B</i>. 2018;98(16).
    doi:<a href="https://doi.org/10.1103/PhysRevB.98.161122">10.1103/PhysRevB.98.161122</a>
  apa: Hetterich, D., Yao, N., Serbyn, M., Pollmann, F., &#38; Trauzettel, B. (2018).
    Detection and characterization of many-body localization in central spin models.
    <i>Physical Review B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.98.161122">https://doi.org/10.1103/PhysRevB.98.161122</a>
  chicago: Hetterich, Daniel, Norman Yao, Maksym Serbyn, Frank Pollmann, and Björn
    Trauzettel. “Detection and Characterization of Many-Body Localization in Central
    Spin Models.” <i>Physical Review B</i>. American Physical Society, 2018. <a href="https://doi.org/10.1103/PhysRevB.98.161122">https://doi.org/10.1103/PhysRevB.98.161122</a>.
  ieee: D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, and B. Trauzettel, “Detection
    and characterization of many-body localization in central spin models,” <i>Physical
    Review B</i>, vol. 98, no. 16. American Physical Society, 2018.
  ista: Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. 2018. Detection and
    characterization of many-body localization in central spin models. Physical Review
    B. 98(16), 161122.
  mla: Hetterich, Daniel, et al. “Detection and Characterization of Many-Body Localization
    in Central Spin Models.” <i>Physical Review B</i>, vol. 98, no. 16, 161122, American
    Physical Society, 2018, doi:<a href="https://doi.org/10.1103/PhysRevB.98.161122">10.1103/PhysRevB.98.161122</a>.
  short: D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, B. Trauzettel, Physical Review
    B 98 (2018).
date_created: 2018-12-11T11:44:20Z
date_published: 2018-10-15T00:00:00Z
date_updated: 2023-09-11T12:55:03Z
day: '15'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.98.161122
external_id:
  arxiv:
  - '1806.08316'
  isi:
  - '000448596500002'
intvolume: '        98'
isi: 1
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1806.08316
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '8008'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Detection and characterization of many-body localization in central spin models
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 98
year: '2018'
...
---
_id: '461'
abstract:
- lang: eng
  text: Turbulence is the major cause of friction losses in transport processes and
    it is responsible for a drastic drag increase in flows over bounding surfaces.
    While much effort is invested into developing ways to control and reduce turbulence
    intensities, so far no methods exist to altogether eliminate turbulence if velocities
    are sufficiently large. We demonstrate for pipe flow that appropriate distortions
    to the velocity profile lead to a complete collapse of turbulence and subsequently
    friction losses are reduced by as much as 90%. Counterintuitively, the return
    to laminar motion is accomplished by initially increasing turbulence intensities
    or by transiently amplifying wall shear. Since neither the Reynolds number nor
    the shear stresses decrease (the latter often increase), these measures are not
    indicative of turbulence collapse. Instead, an amplification mechanism                      measuring
    the interaction between eddies and the mean shear is found to set a threshold
    below which turbulence is suppressed beyond recovery.
acknowledgement: We acknowledge the European Research Council under the European Union’s
  Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement 306589, the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  programme (grant agreement no. 737549) and the Deutsche Forschungsgemeinschaft (Project
  No. FOR 1182) for financial support. We thank our technician P. Maier for providing
  highly valuable ideas and greatly supporting us in all technical aspects. We thank
  M. Schaner for technical drawings, construction and design. We thank M. Schwegel
  for a Matlab code to post-process experimental data.
article_processing_charge: No
author:
- first_name: Jakob
  full_name: Kühnen, Jakob
  id: 3A47AE32-F248-11E8-B48F-1D18A9856A87
  last_name: Kühnen
  orcid: 0000-0003-4312-0179
- first_name: Baofang
  full_name: Song, Baofang
  last_name: Song
- first_name: Davide
  full_name: Scarselli, Davide
  id: 40315C30-F248-11E8-B48F-1D18A9856A87
  last_name: Scarselli
  orcid: 0000-0001-5227-4271
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Michael
  full_name: Riedl, Michael
  id: 3BE60946-F248-11E8-B48F-1D18A9856A87
  last_name: Riedl
  orcid: 0000-0003-4844-6311
- first_name: Ashley
  full_name: Willis, Ashley
  last_name: Willis
- first_name: Marc
  full_name: Avila, Marc
  last_name: Avila
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Kühnen J, Song B, Scarselli D, et al. Destabilizing turbulence in pipe flow.
    <i>Nature Physics</i>. 2018;14:386-390. doi:<a href="https://doi.org/10.1038/s41567-017-0018-3">10.1038/s41567-017-0018-3</a>
  apa: Kühnen, J., Song, B., Scarselli, D., Budanur, N. B., Riedl, M., Willis, A.,
    … Hof, B. (2018). Destabilizing turbulence in pipe flow. <i>Nature Physics</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/s41567-017-0018-3">https://doi.org/10.1038/s41567-017-0018-3</a>
  chicago: Kühnen, Jakob, Baofang Song, Davide Scarselli, Nazmi B Budanur, Michael
    Riedl, Ashley Willis, Marc Avila, and Björn Hof. “Destabilizing Turbulence in
    Pipe Flow.” <i>Nature Physics</i>. Nature Publishing Group, 2018. <a href="https://doi.org/10.1038/s41567-017-0018-3">https://doi.org/10.1038/s41567-017-0018-3</a>.
  ieee: J. Kühnen <i>et al.</i>, “Destabilizing turbulence in pipe flow,” <i>Nature
    Physics</i>, vol. 14. Nature Publishing Group, pp. 386–390, 2018.
  ista: Kühnen J, Song B, Scarselli D, Budanur NB, Riedl M, Willis A, Avila M, Hof
    B. 2018. Destabilizing turbulence in pipe flow. Nature Physics. 14, 386–390.
  mla: Kühnen, Jakob, et al. “Destabilizing Turbulence in Pipe Flow.” <i>Nature Physics</i>,
    vol. 14, Nature Publishing Group, 2018, pp. 386–90, doi:<a href="https://doi.org/10.1038/s41567-017-0018-3">10.1038/s41567-017-0018-3</a>.
  short: J. Kühnen, B. Song, D. Scarselli, N.B. Budanur, M. Riedl, A. Willis, M. Avila,
    B. Hof, Nature Physics 14 (2018) 386–390.
date_created: 2018-12-11T11:46:36Z
date_published: 2018-01-08T00:00:00Z
date_updated: 2024-03-25T23:30:20Z
day: '08'
department:
- _id: BjHo
doi: 10.1038/s41567-017-0018-3
ec_funded: 1
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  url: https://arxiv.org/abs/1711.06543
month: '01'
oa: 1
oa_version: Preprint
page: 386-390
project:
- _id: 25152F3A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '306589'
  name: Decoding the complexity of turbulence at its origin
- _id: 25104D44-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '737549'
  name: Eliminating turbulence in oil pipelines
publication: Nature Physics
publication_status: published
publisher: Nature Publishing Group
publist_id: '7360'
quality_controlled: '1'
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scopus_import: '1'
status: public
title: Destabilizing turbulence in pipe flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 14
year: '2018'
...
---
_id: '462'
abstract:
- lang: eng
  text: 'AtNHX5 and AtNHX6 are endosomal Na+,K+/H+ antiporters that are critical for
    growth and development in Arabidopsis, but the mechanism behind their action remains
    unknown. Here, we report that AtNHX5 and AtNHX6, functioning as H+ leak, control
    auxin homeostasis and auxin-mediated development. We found that nhx5 nhx6 exhibited
    growth variations of auxin-related defects. We further showed that nhx5 nhx6 was
    affected in auxin homeostasis. Genetic analysis showed that AtNHX5 and AtNHX6
    were required for the function of the ER-localized auxin transporter PIN5. Although
    AtNHX5 and AtNHX6 were co-localized with PIN5 at ER, they did not interact directly.
    Instead, the conserved acidic residues in AtNHX5 and AtNHX6, which are essential
    for exchange activity, were required for PIN5 function. AtNHX5 and AtNHX6 regulated
    the pH in ER. Overall, AtNHX5 and AtNHX6 may regulate auxin transport across the
    ER via the pH gradient created by their transport activity. H+-leak pathway provides
    a fine-tuning mechanism that controls cellular auxin fluxes. '
acknowledgement: 'This work was supported by the National Natural Science Foundation
  of China (31571464, 31371438 and 31070222 to Q.S.Q.), the National Basic Research
  Program of China (973 project, 2013CB429904 to Q.S.Q.), the Research Fund for the
  Doctoral Program of Higher Education of China (20130211110001 to Q.S.Q.), the Ministry
  of Education, Youth and Sports of the Czech Republic (the National Program for Sustainability
  I, LO1204), and The Czech Science Foundation GAČR (GA13–40637S) to JF. We thank
  Dr. Tom J. Guilfoyle for DR5::GUS line and Dr. Jia Li for pBIB‐RFP vector and DR5::GFP
  line. We thank Liping Guan and Yang Zhao for their help with the confocal microscope
  assay. '
article_processing_charge: No
article_type: original
author:
- first_name: Ligang
  full_name: Fan, Ligang
  last_name: Fan
- first_name: Lei
  full_name: Zhao, Lei
  last_name: Zhao
- first_name: Wei
  full_name: Hu, Wei
  last_name: Hu
- first_name: Weina
  full_name: Li, Weina
  last_name: Li
- first_name: Ondřej
  full_name: Novák, Ondřej
  last_name: Novák
- first_name: Miroslav
  full_name: Strnad, Miroslav
  last_name: Strnad
- first_name: Sibu
  full_name: Simon, Sibu
  id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
  last_name: Simon
  orcid: 0000-0002-1998-6741
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Jinbo
  full_name: Shen, Jinbo
  last_name: Shen
- first_name: Liwen
  full_name: Jiang, Liwen
  last_name: Jiang
- first_name: Quan
  full_name: Qiu, Quan
  last_name: Qiu
citation:
  ama: Fan L, Zhao L, Hu W, et al. NHX antiporters regulate the pH of endoplasmic
    reticulum and auxin-mediated development. <i>Plant, Cell and Environment</i>.
    2018;41:850-864. doi:<a href="https://doi.org/10.1111/pce.13153">10.1111/pce.13153</a>
  apa: Fan, L., Zhao, L., Hu, W., Li, W., Novák, O., Strnad, M., … Qiu, Q. (2018).
    NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development.
    <i>Plant, Cell and Environment</i>. Wiley-Blackwell. <a href="https://doi.org/10.1111/pce.13153">https://doi.org/10.1111/pce.13153</a>
  chicago: Fan, Ligang, Lei Zhao, Wei Hu, Weina Li, Ondřej Novák, Miroslav Strnad,
    Sibu Simon, et al. “NHX Antiporters Regulate the PH of Endoplasmic Reticulum and
    Auxin-Mediated Development.” <i>Plant, Cell and Environment</i>. Wiley-Blackwell,
    2018. <a href="https://doi.org/10.1111/pce.13153">https://doi.org/10.1111/pce.13153</a>.
  ieee: L. Fan <i>et al.</i>, “NHX antiporters regulate the pH of endoplasmic reticulum
    and auxin-mediated development,” <i>Plant, Cell and Environment</i>, vol. 41.
    Wiley-Blackwell, pp. 850–864, 2018.
  ista: Fan L, Zhao L, Hu W, Li W, Novák O, Strnad M, Simon S, Friml J, Shen J, Jiang
    L, Qiu Q. 2018. NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated
    development. Plant, Cell and Environment. 41, 850–864.
  mla: Fan, Ligang, et al. “NHX Antiporters Regulate the PH of Endoplasmic Reticulum
    and Auxin-Mediated Development.” <i>Plant, Cell and Environment</i>, vol. 41,
    Wiley-Blackwell, 2018, pp. 850–64, doi:<a href="https://doi.org/10.1111/pce.13153">10.1111/pce.13153</a>.
  short: L. Fan, L. Zhao, W. Hu, W. Li, O. Novák, M. Strnad, S. Simon, J. Friml, J.
    Shen, L. Jiang, Q. Qiu, Plant, Cell and Environment 41 (2018) 850–864.
date_created: 2018-12-11T11:46:36Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-09-13T09:03:18Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/pce.13153
external_id:
  isi:
  - '000426870500012'
  pmid:
  - '29360148'
file:
- access_level: open_access
  checksum: 6a20f843565f962cb20281cdf5e40914
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-18T16:22:22Z
  date_updated: 2020-07-14T12:46:32Z
  file_id: '7042'
  file_name: 2018_PlantCellEnv_Fan.pdf
  file_size: 1937976
  relation: main_file
file_date_updated: 2020-07-14T12:46:32Z
has_accepted_license: '1'
intvolume: '        41'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
page: 850 - 864
pmid: 1
publication: Plant, Cell and Environment
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7359'
quality_controlled: '1'
scopus_import: '1'
status: public
title: NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated
  development
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 41
year: '2018'
...
---
_id: '47'
abstract:
- lang: eng
  text: Plant hormones as signalling molecules play an essential role in the control
    of plant growth and development. Typically, sites of hormonal action are usually
    distant from the site of biosynthesis thus relying on efficient transport mechanisms.
    Over the last decades, molecular identification of proteins and protein complexes
    involved in hormonal transport has started. Advanced screens for genes involved
    in hormonal transport in combination with transport assays using heterologous
    systems such as yeast, insect, or tobacco BY2 cells or Xenopus oocytes provided
    important insights into mechanisms underlying distribution of hormones in plant
    body and led to identification of principal transporters for each hormone. This
    review gives a short overview of the mechanisms of hormonal transport and transporters
    identified in Arabidopsis thaliana.
article_processing_charge: No
author:
- first_name: Rashed
  full_name: Abualia, Rashed
  id: 4827E134-F248-11E8-B48F-1D18A9856A87
  last_name: Abualia
  orcid: 0000-0002-9357-9415
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
- first_name: Benoît
  full_name: Lacombe, Benoît
  last_name: Lacombe
citation:
  ama: Abualia R, Benková E, Lacombe B. Transporters and mechanisms of hormone transport
    in arabidopsis. <i>Advances in Botanical Research</i>. 2018;87:115-138. doi:<a
    href="https://doi.org/10.1016/bs.abr.2018.09.007">10.1016/bs.abr.2018.09.007</a>
  apa: Abualia, R., Benková, E., &#38; Lacombe, B. (2018). Transporters and mechanisms
    of hormone transport in arabidopsis. <i>Advances in Botanical Research</i>. Elsevier.
    <a href="https://doi.org/10.1016/bs.abr.2018.09.007">https://doi.org/10.1016/bs.abr.2018.09.007</a>
  chicago: Abualia, Rashed, Eva Benková, and Benoît Lacombe. “Transporters and Mechanisms
    of Hormone Transport in Arabidopsis.” <i>Advances in Botanical Research</i>. Elsevier,
    2018. <a href="https://doi.org/10.1016/bs.abr.2018.09.007">https://doi.org/10.1016/bs.abr.2018.09.007</a>.
  ieee: R. Abualia, E. Benková, and B. Lacombe, “Transporters and mechanisms of hormone
    transport in arabidopsis,” <i>Advances in Botanical Research</i>, vol. 87. Elsevier,
    pp. 115–138, 2018.
  ista: Abualia R, Benková E, Lacombe B. 2018. Transporters and mechanisms of hormone
    transport in arabidopsis. Advances in Botanical Research. 87, 115–138.
  mla: Abualia, Rashed, et al. “Transporters and Mechanisms of Hormone Transport in
    Arabidopsis.” <i>Advances in Botanical Research</i>, vol. 87, Elsevier, 2018,
    pp. 115–38, doi:<a href="https://doi.org/10.1016/bs.abr.2018.09.007">10.1016/bs.abr.2018.09.007</a>.
  short: R. Abualia, E. Benková, B. Lacombe, Advances in Botanical Research 87 (2018)
    115–138.
date_created: 2018-12-11T11:44:20Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2024-03-25T23:30:22Z
day: '01'
department:
- _id: EvBe
doi: 10.1016/bs.abr.2018.09.007
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  isi:
  - '000453657800006'
intvolume: '        87'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 115 - 138
publication: Advances in Botanical Research
publication_status: published
publisher: Elsevier
publist_id: '8007'
quality_controlled: '1'
related_material:
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  - id: '10303'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Transporters and mechanisms of hormone transport in arabidopsis
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 87
year: '2018'
...
