---
_id: '23'
abstract:
- lang: eng
  text: The strong atomistic spin–orbit coupling of holes makes single-shot spin readout
    measurements difficult because it reduces the spin lifetimes. By integrating the
    charge sensor into a high bandwidth radio frequency reflectometry setup, we were
    able to demonstrate single-shot readout of a germanium quantum dot hole spin and
    measure the spin lifetime. Hole spin relaxation times of about 90 μs at 500 mT
    are reported, with a total readout visibility of about 70%. By analyzing separately
    the spin-to-charge conversion and charge readout fidelities, we have obtained
    insight into the processes limiting the visibilities of hole spins. The analyses
    suggest that high hole visibilities are feasible at realistic experimental conditions,
    underlying the potential of hole spins for the realization of viable qubit devices.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
article_processing_charge: No
author:
- first_name: Lada
  full_name: Vukušić, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukušić
  orcid: 0000-0003-2424-8636
- first_name: Josip
  full_name: Kukucka, Josip
  id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
  last_name: Kukucka
- first_name: Hannes
  full_name: Watzinger, Hannes
  id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
  last_name: Watzinger
- first_name: Joshua M
  full_name: Milem, Joshua M
  id: 4CDE0A96-F248-11E8-B48F-1D18A9856A87
  last_name: Milem
- first_name: Friedrich
  full_name: Schäffler, Friedrich
  last_name: Schäffler
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
citation:
  ama: Vukušić L, Kukucka J, Watzinger H, Milem JM, Schäffler F, Katsaros G. Single-shot
    readout of hole spins in Ge. <i>Nano Letters</i>. 2018;18(11):7141-7145. doi:<a
    href="https://doi.org/10.1021/acs.nanolett.8b03217">10.1021/acs.nanolett.8b03217</a>
  apa: Vukušić, L., Kukucka, J., Watzinger, H., Milem, J. M., Schäffler, F., &#38;
    Katsaros, G. (2018). Single-shot readout of hole spins in Ge. <i>Nano Letters</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.8b03217">https://doi.org/10.1021/acs.nanolett.8b03217</a>
  chicago: Vukušić, Lada, Josip Kukucka, Hannes Watzinger, Joshua M Milem, Friedrich
    Schäffler, and Georgios Katsaros. “Single-Shot Readout of Hole Spins in Ge.” <i>Nano
    Letters</i>. American Chemical Society, 2018. <a href="https://doi.org/10.1021/acs.nanolett.8b03217">https://doi.org/10.1021/acs.nanolett.8b03217</a>.
  ieee: L. Vukušić, J. Kukucka, H. Watzinger, J. M. Milem, F. Schäffler, and G. Katsaros,
    “Single-shot readout of hole spins in Ge,” <i>Nano Letters</i>, vol. 18, no. 11.
    American Chemical Society, pp. 7141–7145, 2018.
  ista: Vukušić L, Kukucka J, Watzinger H, Milem JM, Schäffler F, Katsaros G. 2018.
    Single-shot readout of hole spins in Ge. Nano Letters. 18(11), 7141–7145.
  mla: Vukušić, Lada, et al. “Single-Shot Readout of Hole Spins in Ge.” <i>Nano Letters</i>,
    vol. 18, no. 11, American Chemical Society, 2018, pp. 7141–45, doi:<a href="https://doi.org/10.1021/acs.nanolett.8b03217">10.1021/acs.nanolett.8b03217</a>.
  short: L. Vukušić, J. Kukucka, H. Watzinger, J.M. Milem, F. Schäffler, G. Katsaros,
    Nano Letters 18 (2018) 7141–7145.
date_created: 2018-12-11T11:44:13Z
date_published: 2018-10-25T00:00:00Z
date_updated: 2023-09-18T09:30:37Z
day: '25'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1021/acs.nanolett.8b03217
ec_funded: 1
external_id:
  isi:
  - '000451102100064'
  pmid:
  - '30359041'
file:
- access_level: open_access
  checksum: 3e6034a94c6b5335e939145d88bdb371
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:16:08Z
  date_updated: 2020-07-14T12:45:37Z
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  file_name: IST-2018-1065-v1+1_ACS_nanoletters_8b03217.pdf
  file_size: 1361441
  relation: main_file
file_date_updated: 2020-07-14T12:45:37Z
has_accepted_license: '1'
intvolume: '        18'
isi: 1
issue: '11'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 7141 - 7145
pmid: 1
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '335497'
  name: Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires
publication: Nano Letters
publication_identifier:
  issn:
  - '15306984'
publication_status: published
publisher: American Chemical Society
publist_id: '8032'
pubrep_id: '1065'
quality_controlled: '1'
related_material:
  record:
  - id: '7977'
    relation: popular_science
  - id: '69'
    relation: dissertation_contains
    status: public
  - id: '7996'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Single-shot readout of hole spins in Ge
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 18
year: '2018'
...
---
_id: '24'
abstract:
- lang: eng
  text: Partially-observable Markov decision processes (POMDPs) with discounted-sum
    payoff are a standard framework to model a wide range of problems related to decision
    making under uncertainty. Traditionally, the goal has been to obtain policies
    that optimize the expectation of the discounted-sum payoff. A key drawback of
    the expectation measure is that even low probability events with extreme payoff
    can significantly affect the expectation, and thus the obtained policies are not
    necessarily risk-averse. An alternate approach is to optimize the probability
    that the payoff is above a certain threshold, which allows obtaining risk-averse
    policies, but ignores optimization of the expectation. We consider the expectation
    optimization with probabilistic guarantee (EOPG) problem, where the goal is to
    optimize the expectation ensuring that the payoff is above a given threshold with
    at least a specified probability. We present several results on the EOPG problem,
    including the first algorithm to solve it.
acknowledgement: "This research was supported by the Vienna Science and Technology
  Fund (WWTF) grant ICT15-003; Austrian Science Fund (FWF): S11407-N23(RiSE/SHiNE);and
  an ERC Start Grant (279307:Graph Games).\r\n"
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Adrian
  full_name: Elgyütt, Adrian
  id: 4A2E9DBA-F248-11E8-B48F-1D18A9856A87
  last_name: Elgyütt
- first_name: Petr
  full_name: Novotny, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotny
- first_name: Owen
  full_name: Rouillé, Owen
  last_name: Rouillé
citation:
  ama: 'Chatterjee K, Elgyütt A, Novotný P, Rouillé O. Expectation optimization with
    probabilistic guarantees in POMDPs with discounted-sum objectives. In: Vol 2018.
    IJCAI; 2018:4692-4699. doi:<a href="https://doi.org/10.24963/ijcai.2018/652">10.24963/ijcai.2018/652</a>'
  apa: 'Chatterjee, K., Elgyütt, A., Novotný, P., &#38; Rouillé, O. (2018). Expectation
    optimization with probabilistic guarantees in POMDPs with discounted-sum objectives
    (Vol. 2018, pp. 4692–4699). Presented at the IJCAI: International Joint Conference
    on Artificial Intelligence, Stockholm, Sweden: IJCAI. <a href="https://doi.org/10.24963/ijcai.2018/652">https://doi.org/10.24963/ijcai.2018/652</a>'
  chicago: Chatterjee, Krishnendu, Adrian Elgyütt, Petr Novotný, and Owen Rouillé.
    “Expectation Optimization with Probabilistic Guarantees in POMDPs with Discounted-Sum
    Objectives,” 2018:4692–99. IJCAI, 2018. <a href="https://doi.org/10.24963/ijcai.2018/652">https://doi.org/10.24963/ijcai.2018/652</a>.
  ieee: 'K. Chatterjee, A. Elgyütt, P. Novotný, and O. Rouillé, “Expectation optimization
    with probabilistic guarantees in POMDPs with discounted-sum objectives,” presented
    at the IJCAI: International Joint Conference on Artificial Intelligence, Stockholm,
    Sweden, 2018, vol. 2018, pp. 4692–4699.'
  ista: 'Chatterjee K, Elgyütt A, Novotný P, Rouillé O. 2018. Expectation optimization
    with probabilistic guarantees in POMDPs with discounted-sum objectives. IJCAI:
    International Joint Conference on Artificial Intelligence vol. 2018, 4692–4699.'
  mla: Chatterjee, Krishnendu, et al. <i>Expectation Optimization with Probabilistic
    Guarantees in POMDPs with Discounted-Sum Objectives</i>. Vol. 2018, IJCAI, 2018,
    pp. 4692–99, doi:<a href="https://doi.org/10.24963/ijcai.2018/652">10.24963/ijcai.2018/652</a>.
  short: K. Chatterjee, A. Elgyütt, P. Novotný, O. Rouillé, in:, IJCAI, 2018, pp.
    4692–4699.
conference:
  end_date: 2018-07-19
  location: Stockholm, Sweden
  name: 'IJCAI: International Joint Conference on Artificial Intelligence'
  start_date: 2018-07-13
date_created: 2018-12-11T11:44:13Z
date_published: 2018-07-01T00:00:00Z
date_updated: 2025-06-02T08:53:48Z
day: '01'
department:
- _id: KrCh
- _id: ToHe
doi: 10.24963/ijcai.2018/652
ec_funded: 1
external_id:
  arxiv:
  - '1804.10601'
  isi:
  - '000764175404117'
intvolume: '      2018'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1804.10601
month: '07'
oa: 1
oa_version: Preprint
page: 4692 - 4699
project:
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
  grant_number: ICT15-003
  name: Efficient Algorithms for Computer Aided Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S 11407_N23
  name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication_status: published
publisher: IJCAI
publist_id: '8031'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Expectation optimization with probabilistic guarantees in POMDPs with discounted-sum
  objectives
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2018
year: '2018'
...
---
_id: '6664'
abstract:
- lang: eng
  text: Reed-Muller (RM) and polar codes are a class of capacity-achieving channel
    coding schemes with the same factor graph representation. Low-complexity decoding
    algorithms fall short in providing a good error-correction performance for RM
    and polar codes. Using the symmetric group of RM and polar codes, the specific
    decoding algorithm can be carried out on multiple permutations of the factor graph
    to boost the error-correction performance. However, this approach results in high
    decoding complexity. In this paper, we first derive the total number of factor
    graph permutations on which the decoding can be performed. We further propose
    a successive permutation (SP) scheme which finds the permutations on the fly,
    thus the decoding always progresses on a single factor graph permutation. We show
    that SP can be used to improve the error-correction performance of RM and polar
    codes under successive-cancellation (SC) and SC list (SCL) decoding, while keeping
    the memory requirements of the decoders unaltered. Our results for RM and polar
    codes of length 128 and rate 0.5 show that when SP is used and at a target frame
    error rate of 10 -4 , up to 0.5 dB and 0.1 dB improvement can be achieved for
    RM and polar codes respectively.
arxiv: 1
author:
- first_name: Seyyed Ali
  full_name: Hashemi, Seyyed Ali
  last_name: Hashemi
- first_name: Nghia
  full_name: Doan, Nghia
  last_name: Doan
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: 'Warren '
  full_name: 'Gross, Warren '
  last_name: Gross
citation:
  ama: 'Hashemi SA, Doan N, Mondelli M, Gross W. Decoding Reed-Muller and polar codes
    by successive factor graph permutations. In: <i>2018 IEEE 10th International Symposium
    on Turbo Codes &#38; Iterative Information Processing</i>. IEEE; 2018:1-5. doi:<a
    href="https://doi.org/10.1109/istc.2018.8625281">10.1109/istc.2018.8625281</a>'
  apa: 'Hashemi, S. A., Doan, N., Mondelli, M., &#38; Gross, W. (2018). Decoding Reed-Muller
    and polar codes by successive factor graph permutations. In <i>2018 IEEE 10th
    International Symposium on Turbo Codes &#38; Iterative Information Processing</i>
    (pp. 1–5). Hong Kong, China: IEEE. <a href="https://doi.org/10.1109/istc.2018.8625281">https://doi.org/10.1109/istc.2018.8625281</a>'
  chicago: Hashemi, Seyyed Ali, Nghia Doan, Marco Mondelli, and Warren  Gross. “Decoding
    Reed-Muller and Polar Codes by Successive Factor Graph Permutations.” In <i>2018
    IEEE 10th International Symposium on Turbo Codes &#38; Iterative Information Processing</i>,
    1–5. IEEE, 2018. <a href="https://doi.org/10.1109/istc.2018.8625281">https://doi.org/10.1109/istc.2018.8625281</a>.
  ieee: S. A. Hashemi, N. Doan, M. Mondelli, and W. Gross, “Decoding Reed-Muller and
    polar codes by successive factor graph permutations,” in <i>2018 IEEE 10th International
    Symposium on Turbo Codes &#38; Iterative Information Processing</i>, Hong Kong,
    China, 2018, pp. 1–5.
  ista: 'Hashemi SA, Doan N, Mondelli M, Gross W. 2018. Decoding Reed-Muller and polar
    codes by successive factor graph permutations. 2018 IEEE 10th International Symposium
    on Turbo Codes &#38; Iterative Information Processing. ISTC: Symposium on Turbo
    Codes &#38; Iterative Information Processing, 1–5.'
  mla: Hashemi, Seyyed Ali, et al. “Decoding Reed-Muller and Polar Codes by Successive
    Factor Graph Permutations.” <i>2018 IEEE 10th International Symposium on Turbo
    Codes &#38; Iterative Information Processing</i>, IEEE, 2018, pp. 1–5, doi:<a
    href="https://doi.org/10.1109/istc.2018.8625281">10.1109/istc.2018.8625281</a>.
  short: S.A. Hashemi, N. Doan, M. Mondelli, W. Gross, in:, 2018 IEEE 10th International
    Symposium on Turbo Codes &#38; Iterative Information Processing, IEEE, 2018, pp.
    1–5.
conference:
  end_date: 2018-12-07
  location: Hong Kong, China
  name: 'ISTC: Symposium on Turbo Codes & Iterative Information Processing'
  start_date: 2018-12-03
date_created: 2019-07-23T09:12:43Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2021-01-12T08:08:29Z
day: '01'
doi: 10.1109/istc.2018.8625281
extern: '1'
external_id:
  arxiv:
  - '1807.03912'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1807.03912
month: '12'
oa: 1
oa_version: Preprint
page: 1-5
publication: 2018 IEEE 10th International Symposium on Turbo Codes & Iterative Information
  Processing
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: Decoding Reed-Muller and polar codes by successive factor graph permutations
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '6665'
abstract:
- lang: eng
  text: We prove that, at least for the binary erasure channel, the polar-coding paradigm
    gives rise to codes that not only approach the Shannon limit but, in fact, do
    so under the best possible scaling of their block length as a function of the
    gap to capacity. This result exhibits the first known family of binary codes that
    attain both optimal scaling and quasi-linear complexity of encoding and decoding.
    Specifically, for any fixed δ > 0, we exhibit binary linear codes that ensure
    reliable communication at rates within ε > 0 of capacity with block length n =
    O(1/ε 2+δ ), construction complexity Θ(n), and encoding/decoding complexity Θ(n
    log n).
arxiv: 1
author:
- first_name: Arman
  full_name: Fazeli, Arman
  last_name: Fazeli
- first_name: Hamed
  full_name: Hassani, Hamed
  last_name: Hassani
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Alexander
  full_name: Vardy, Alexander
  last_name: Vardy
citation:
  ama: 'Fazeli A, Hassani H, Mondelli M, Vardy A. Binary linear codes with optimal
    scaling: Polar codes with large kernels. In: <i>2018 IEEE Information Theory Workshop</i>.
    IEEE; 2018:1-5. doi:<a href="https://doi.org/10.1109/itw.2018.8613428">10.1109/itw.2018.8613428</a>'
  apa: 'Fazeli, A., Hassani, H., Mondelli, M., &#38; Vardy, A. (2018). Binary linear
    codes with optimal scaling: Polar codes with large kernels. In <i>2018 IEEE Information
    Theory Workshop</i> (pp. 1–5). Guangzhou, China: IEEE. <a href="https://doi.org/10.1109/itw.2018.8613428">https://doi.org/10.1109/itw.2018.8613428</a>'
  chicago: 'Fazeli, Arman, Hamed Hassani, Marco Mondelli, and Alexander Vardy. “Binary
    Linear Codes with Optimal Scaling: Polar Codes with Large Kernels.” In <i>2018
    IEEE Information Theory Workshop</i>, 1–5. IEEE, 2018. <a href="https://doi.org/10.1109/itw.2018.8613428">https://doi.org/10.1109/itw.2018.8613428</a>.'
  ieee: 'A. Fazeli, H. Hassani, M. Mondelli, and A. Vardy, “Binary linear codes with
    optimal scaling: Polar codes with large kernels,” in <i>2018 IEEE Information
    Theory Workshop</i>, Guangzhou, China, 2018, pp. 1–5.'
  ista: 'Fazeli A, Hassani H, Mondelli M, Vardy A. 2018. Binary linear codes with
    optimal scaling: Polar codes with large kernels. 2018 IEEE Information Theory
    Workshop. ITW: Information Theory Workshop, 1–5.'
  mla: 'Fazeli, Arman, et al. “Binary Linear Codes with Optimal Scaling: Polar Codes
    with Large Kernels.” <i>2018 IEEE Information Theory Workshop</i>, IEEE, 2018,
    pp. 1–5, doi:<a href="https://doi.org/10.1109/itw.2018.8613428">10.1109/itw.2018.8613428</a>.'
  short: A. Fazeli, H. Hassani, M. Mondelli, A. Vardy, in:, 2018 IEEE Information
    Theory Workshop, IEEE, 2018, pp. 1–5.
conference:
  end_date: 2018-11-29
  location: Guangzhou, China
  name: 'ITW: Information Theory Workshop'
  start_date: 2018-11-25
date_created: 2019-07-23T11:01:42Z
date_published: 2018-11-01T00:00:00Z
date_updated: 2024-03-07T12:18:50Z
day: '01'
doi: 10.1109/itw.2018.8613428
extern: '1'
external_id:
  arxiv:
  - '1711.01339'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1711.01339
month: '11'
oa: 1
oa_version: Preprint
page: 1-5
publication: 2018 IEEE Information Theory Workshop
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '9002'
    relation: later_version
    status: public
status: public
title: 'Binary linear codes with optimal scaling: Polar codes with large kernels'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '6674'
abstract:
- lang: eng
  text: Polar codes represent one of the major recent breakthroughs in coding theory
    and, because of their attractive features, they have been selected for the incoming
    5G standard. As such, a lot of attention has been devoted to the development of
    decoding algorithms with good error performance and efficient hardware implementation.
    One of the leading candidates in this regard is represented by successive-cancellation
    list (SCL) decoding. However, its hardware implementation requires a large amount
    of memory. Recently, a partitioned SCL (PSCL) decoder has been proposed to significantly
    reduce the memory consumption. In this paper, we consider the paradigm of PSCL
    decoding from a practical standpoint, and we provide several improvements. First,
    by changing the target signal-to-noise ratio and consequently modifying the construction
    of the code, we are able to improve the performance at no additional computational,
    latency, or memory cost. Second, we bridge the performance gap between SCL and
    PSCL decoding by introducing a generalized PSCL decoder and a layered PSCL decoder.
    In this way, we obtain almost the same performance of the SCL decoder with a significantly
    lower memory requirement, as testified by hardware implementation results. Third,
    we present an optimal scheme to allocate cyclic redundancy checks. Finally, we
    provide a lower bound on the list size that guarantees optimal maximum a posteriori
    performance for the binary erasure channel.
author:
- first_name: Seyyed Ali
  full_name: Hashemi, Seyyed Ali
  last_name: Hashemi
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: S. Hamed
  full_name: Hassani, S. Hamed
  last_name: Hassani
- first_name: Carlo
  full_name: Condo, Carlo
  last_name: Condo
- first_name: Rudiger L.
  full_name: Urbanke, Rudiger L.
  last_name: Urbanke
- first_name: Warren J.
  full_name: Gross, Warren J.
  last_name: Gross
citation:
  ama: 'Hashemi SA, Mondelli M, Hassani SH, Condo C, Urbanke RL, Gross WJ. Decoder
    partitioning: Towards practical list decoding of polar codes. <i>IEEE Transactions
    on Communications</i>. 2018;66(9):3749-3759. doi:<a href="https://doi.org/10.1109/tcomm.2018.2832207">10.1109/tcomm.2018.2832207</a>'
  apa: 'Hashemi, S. A., Mondelli, M., Hassani, S. H., Condo, C., Urbanke, R. L., &#38;
    Gross, W. J. (2018). Decoder partitioning: Towards practical list decoding of
    polar codes. <i>IEEE Transactions on Communications</i>. IEEE. <a href="https://doi.org/10.1109/tcomm.2018.2832207">https://doi.org/10.1109/tcomm.2018.2832207</a>'
  chicago: 'Hashemi, Seyyed Ali, Marco Mondelli, S. Hamed Hassani, Carlo Condo, Rudiger
    L. Urbanke, and Warren J. Gross. “Decoder Partitioning: Towards Practical List
    Decoding of Polar Codes.” <i>IEEE Transactions on Communications</i>. IEEE, 2018.
    <a href="https://doi.org/10.1109/tcomm.2018.2832207">https://doi.org/10.1109/tcomm.2018.2832207</a>.'
  ieee: 'S. A. Hashemi, M. Mondelli, S. H. Hassani, C. Condo, R. L. Urbanke, and W.
    J. Gross, “Decoder partitioning: Towards practical list decoding of polar codes,”
    <i>IEEE Transactions on Communications</i>, vol. 66, no. 9. IEEE, pp. 3749–3759,
    2018.'
  ista: 'Hashemi SA, Mondelli M, Hassani SH, Condo C, Urbanke RL, Gross WJ. 2018.
    Decoder partitioning: Towards practical list decoding of polar codes. IEEE Transactions
    on Communications. 66(9), 3749–3759.'
  mla: 'Hashemi, Seyyed Ali, et al. “Decoder Partitioning: Towards Practical List
    Decoding of Polar Codes.” <i>IEEE Transactions on Communications</i>, vol. 66,
    no. 9, IEEE, 2018, pp. 3749–59, doi:<a href="https://doi.org/10.1109/tcomm.2018.2832207">10.1109/tcomm.2018.2832207</a>.'
  short: S.A. Hashemi, M. Mondelli, S.H. Hassani, C. Condo, R.L. Urbanke, W.J. Gross,
    IEEE Transactions on Communications 66 (2018) 3749–3759.
date_created: 2019-07-24T08:59:41Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2021-01-12T08:08:31Z
day: '01'
doi: 10.1109/tcomm.2018.2832207
extern: '1'
intvolume: '        66'
issue: '9'
language:
- iso: eng
month: '09'
oa_version: None
page: 3749-3759
publication: IEEE Transactions on Communications
publication_identifier:
  eissn:
  - 1558-0857
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'Decoder partitioning: Towards practical list decoding of polar codes'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 66
year: '2018'
...
---
_id: '6675'
abstract:
- lang: eng
  text: 'We present a coding paradigm that provides a new achievable rate for the
    primitive relay channel by combining compress-and-forward and decode-and-forward
    with a chaining construction. In the primitive relay channel model, the source
    broadcasts a message to the relay and to the destination; and the relay facilitates
    this communication by sending an additional message to the destination through
    a separate channel. Two well-known coding approaches for this setting are decode-and-forward
    and compress-and-forward: in the former, the relay decodes the message and sends
    some of the information to the destination; in the latter, the relay does not
    attempt to decode, but it sends a compressed description of the received sequence
    to the destination via Wyner-Ziv coding. In our scheme, we transmit over pairs
    of blocks and we use compress-and-forward for the first block and decode-and-forward
    for the second. In particular, in the first block, the relay does not attempt
    to decode and it sends only a part of the compressed description of the received
    sequence; in the second block, the relay decodes the message and sends this information
    plus the remaining part of the compressed sequence relative to the first block.
    As a result, we strictly outperform both compress-and- forward and decode-and-forward.
    Furthermore, this paradigm can be implemented with a low-complexity polar coding
    scheme that has the typical attractive features of polar codes, i.e., quasi-linear
    encoding/decoding complexity and super-polynomial decay of the error probability.
    Throughout the paper we consider as a running example the special case of the
    erasure relay channel and we compare the rates achievable by our proposed scheme
    with the existing upper and lower bounds.'
arxiv: 1
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Hamed
  full_name: Hassani, Hamed
  last_name: Hassani
- first_name: Rudiger
  full_name: Urbanke, Rudiger
  last_name: Urbanke
citation:
  ama: 'Mondelli M, Hassani H, Urbanke R. A new coding paradigm for the primitive
    relay channel. In: <i>2018 IEEE International Symposium on Information Theory</i>.
    IEEE; 2018:351-355. doi:<a href="https://doi.org/10.1109/isit.2018.8437479">10.1109/isit.2018.8437479</a>'
  apa: 'Mondelli, M., Hassani, H., &#38; Urbanke, R. (2018). A new coding paradigm
    for the primitive relay channel. In <i>2018 IEEE International Symposium on Information
    Theory</i> (pp. 351–355). Vail, CO, United States: IEEE. <a href="https://doi.org/10.1109/isit.2018.8437479">https://doi.org/10.1109/isit.2018.8437479</a>'
  chicago: Mondelli, Marco, Hamed Hassani, and Rudiger Urbanke. “A New Coding Paradigm
    for the Primitive Relay Channel.” In <i>2018 IEEE International Symposium on Information
    Theory</i>, 351–55. IEEE, 2018. <a href="https://doi.org/10.1109/isit.2018.8437479">https://doi.org/10.1109/isit.2018.8437479</a>.
  ieee: M. Mondelli, H. Hassani, and R. Urbanke, “A new coding paradigm for the primitive
    relay channel,” in <i>2018 IEEE International Symposium on Information Theory</i>,
    Vail, CO, United States, 2018, pp. 351–355.
  ista: 'Mondelli M, Hassani H, Urbanke R. 2018. A new coding paradigm for the primitive
    relay channel. 2018 IEEE International Symposium on Information Theory. ISIT:
    International Symposium on Information Theory , 351–355.'
  mla: Mondelli, Marco, et al. “A New Coding Paradigm for the Primitive Relay Channel.”
    <i>2018 IEEE International Symposium on Information Theory</i>, IEEE, 2018, pp.
    351–55, doi:<a href="https://doi.org/10.1109/isit.2018.8437479">10.1109/isit.2018.8437479</a>.
  short: M. Mondelli, H. Hassani, R. Urbanke, in:, 2018 IEEE International Symposium
    on Information Theory, IEEE, 2018, pp. 351–355.
conference:
  end_date: 2018-06-22
  location: Vail, CO, United States
  name: 'ISIT: International Symposium on Information Theory '
  start_date: 2018-06-17
date_created: 2019-07-24T09:10:38Z
date_published: 2018-06-16T00:00:00Z
date_updated: 2023-02-23T12:56:49Z
day: '16'
doi: 10.1109/isit.2018.8437479
extern: '1'
external_id:
  arxiv:
  - '1801.03153'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1801.03153
month: '06'
oa: 1
oa_version: Preprint
page: 351-355
publication: 2018 IEEE International Symposium on Information Theory
publication_identifier:
  eissn:
  - 2157-8117
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '7007'
    relation: later_version
    status: public
status: public
title: A new coding paradigm for the primitive relay channel
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '6678'
abstract:
- lang: eng
  text: We survey coding techniques that enable reliable transmission at rates that
    approach the capacity of an arbitrary discrete memoryless channel. In particular,
    we take the point of view of modern coding theory and discuss how recent advances
    in coding for symmetric channels help provide more efficient solutions for the
    asymmetric case. We consider, in more detail, three basic coding paradigms. The
    first one is Gallager's scheme that consists of concatenating a linear code with
    a non-linear mapping so that the input distribution can be appropriately shaped.
    We explicitly show that both polar codes and spatially coupled codes can be employed
    in this scenario. Furthermore, we derive a scaling law between the gap to capacity,
    the cardinality of the input and output alphabets, and the required size of the
    mapper. The second one is an integrated scheme in which the code is used both
    for source coding, in order to create codewords distributed according to the capacity-achieving
    input distribution, and for channel coding, in order to provide error protection.
    Such a technique has been recently introduced by Honda and Yamamoto in the context
    of polar codes, and we show how to apply it also to the design of sparse graph
    codes. The third paradigm is based on an idea of Böcherer and Mathar, and separates
    the two tasks of source coding and channel coding by a chaining construction that
    binds together several codewords. We present conditions for the source code and
    the channel code, and we describe how to combine any source code with any channel
    code that fulfill those conditions, in order to provide capacity-achieving schemes
    for asymmetric channels. In particular, we show that polar codes, spatially coupled
    codes, and homophonic codes are suitable as basic building blocks of the proposed
    coding strategy. Rather than focusing on the exact details of the schemes, the
    purpose of this tutorial is to present different coding techniques that can then
    be implemented with many variants. There is no absolute winner and, in order to
    understand the most suitable technique for a specific application scenario, we
    provide a detailed comparison that takes into account several performance metrics.
article_type: original
arxiv: 1
author:
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Hamed
  full_name: Hassani, Hamed
  last_name: Hassani
- first_name: 'Rudiger '
  full_name: 'Urbanke, Rudiger '
  last_name: Urbanke
citation:
  ama: Mondelli M, Hassani H, Urbanke R. How to achieve the capacity of asymmetric
    channels. <i>IEEE Transactions on Information Theory</i>. 2018;64(5):3371-3393.
    doi:<a href="https://doi.org/10.1109/tit.2018.2789885">10.1109/tit.2018.2789885</a>
  apa: Mondelli, M., Hassani, H., &#38; Urbanke, R. (2018). How to achieve the capacity
    of asymmetric channels. <i>IEEE Transactions on Information Theory</i>. IEEE.
    <a href="https://doi.org/10.1109/tit.2018.2789885">https://doi.org/10.1109/tit.2018.2789885</a>
  chicago: Mondelli, Marco, Hamed Hassani, and Rudiger  Urbanke. “How to Achieve the
    Capacity of Asymmetric Channels.” <i>IEEE Transactions on Information Theory</i>.
    IEEE, 2018. <a href="https://doi.org/10.1109/tit.2018.2789885">https://doi.org/10.1109/tit.2018.2789885</a>.
  ieee: M. Mondelli, H. Hassani, and R. Urbanke, “How to achieve the capacity of asymmetric
    channels,” <i>IEEE Transactions on Information Theory</i>, vol. 64, no. 5. IEEE,
    pp. 3371–3393, 2018.
  ista: Mondelli M, Hassani H, Urbanke R. 2018. How to achieve the capacity of asymmetric
    channels. IEEE Transactions on Information Theory. 64(5), 3371–3393.
  mla: Mondelli, Marco, et al. “How to Achieve the Capacity of Asymmetric Channels.”
    <i>IEEE Transactions on Information Theory</i>, vol. 64, no. 5, IEEE, 2018, pp.
    3371–93, doi:<a href="https://doi.org/10.1109/tit.2018.2789885">10.1109/tit.2018.2789885</a>.
  short: M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Information Theory
    64 (2018) 3371–3393.
date_created: 2019-07-24T12:38:49Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-02-23T12:50:46Z
day: '01'
doi: 10.1109/tit.2018.2789885
extern: '1'
external_id:
  arxiv:
  - '1406.7373'
intvolume: '        64'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1406.7373
month: '05'
oa: 1
oa_version: Preprint
page: 3371-3393
publication: IEEE Transactions on Information Theory
publication_identifier:
  issn:
  - 0018-9448
  - 1557-9654
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  record:
  - id: '6740'
    relation: earlier_version
    status: public
status: public
title: How to achieve the capacity of asymmetric channels
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 64
year: '2018'
...
---
_id: '67'
abstract:
- lang: eng
  text: 'Gene regulatory networks evolve through rewiring of individual components—that
    is, through changes in regulatory connections. However, the mechanistic basis
    of regulatory rewiring is poorly understood. Using a canonical gene regulatory
    system, we quantify the properties of transcription factors that determine the
    evolutionary potential for rewiring of regulatory connections: robustness, tunability
    and evolvability. In vivo repression measurements of two repressors at mutated
    operator sites reveal their contrasting evolutionary potential: while robustness
    and evolvability were positively correlated, both were in trade-off with tunability.
    Epistatic interactions between adjacent operators alleviated this trade-off. A
    thermodynamic model explains how the differences in robustness, tunability and
    evolvability arise from biophysical characteristics of repressor–DNA binding.
    The model also uncovers that the energy matrix, which describes how mutations
    affect repressor–DNA binding, encodes crucial information about the evolutionary
    potential of a repressor. The biophysical determinants of evolutionary potential
    for regulatory rewiring constitute a mechanistic framework for understanding network
    evolution.'
article_processing_charge: No
article_type: original
author:
- first_name: Claudia
  full_name: Igler, Claudia
  id: 46613666-F248-11E8-B48F-1D18A9856A87
  last_name: Igler
- first_name: Mato
  full_name: Lagator, Mato
  id: 345D25EC-F248-11E8-B48F-1D18A9856A87
  last_name: Lagator
- first_name: Gasper
  full_name: Tkacik, Gasper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkacik
  orcid: 0000-0002-6699-1455
- first_name: Jonathan P
  full_name: Bollback, Jonathan P
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
citation:
  ama: Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. Evolutionary potential
    of transcription factors for gene regulatory rewiring. <i>Nature Ecology and Evolution</i>.
    2018;2(10):1633-1643. doi:<a href="https://doi.org/10.1038/s41559-018-0651-y">10.1038/s41559-018-0651-y</a>
  apa: Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., &#38; Guet, C. C. (2018).
    Evolutionary potential of transcription factors for gene regulatory rewiring.
    <i>Nature Ecology and Evolution</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41559-018-0651-y">https://doi.org/10.1038/s41559-018-0651-y</a>
  chicago: Igler, Claudia, Mato Lagator, Gašper Tkačik, Jonathan P Bollback, and Calin
    C Guet. “Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.”
    <i>Nature Ecology and Evolution</i>. Nature Publishing Group, 2018. <a href="https://doi.org/10.1038/s41559-018-0651-y">https://doi.org/10.1038/s41559-018-0651-y</a>.
  ieee: C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Evolutionary
    potential of transcription factors for gene regulatory rewiring,” <i>Nature Ecology
    and Evolution</i>, vol. 2, no. 10. Nature Publishing Group, pp. 1633–1643, 2018.
  ista: Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. 2018. Evolutionary potential
    of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution.
    2(10), 1633–1643.
  mla: Igler, Claudia, et al. “Evolutionary Potential of Transcription Factors for
    Gene Regulatory Rewiring.” <i>Nature Ecology and Evolution</i>, vol. 2, no. 10,
    Nature Publishing Group, 2018, pp. 1633–43, doi:<a href="https://doi.org/10.1038/s41559-018-0651-y">10.1038/s41559-018-0651-y</a>.
  short: C. Igler, M. Lagator, G. Tkačik, J.P. Bollback, C.C. Guet, Nature Ecology
    and Evolution 2 (2018) 1633–1643.
date_created: 2018-12-11T11:44:27Z
date_published: 2018-09-10T00:00:00Z
date_updated: 2024-03-25T23:30:27Z
day: '10'
ddc:
- '570'
department:
- _id: CaGu
- _id: GaTk
- _id: JoBo
doi: 10.1038/s41559-018-0651-y
ec_funded: 1
external_id:
  isi:
  - '000447947600021'
file:
- access_level: open_access
  checksum: 383a2e2c944a856e2e821ec8e7bf71b6
  content_type: application/pdf
  creator: dernst
  date_created: 2020-05-14T11:28:52Z
  date_updated: 2020-07-14T12:47:37Z
  file_id: '7830'
  file_name: 2018_NatureEcology_Igler.pdf
  file_size: 1135973
  relation: main_file
file_date_updated: 2020-07-14T12:47:37Z
has_accepted_license: '1'
intvolume: '         2'
isi: 1
issue: '10'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 1633 - 1643
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 2578D616-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '648440'
  name: Selective Barriers to Horizontal Gene Transfer
- _id: 251EE76E-B435-11E9-9278-68D0E5697425
  grant_number: '24573'
  name: Design principles underlying genetic switch architecture (DOC Fellowship)
publication: Nature Ecology and Evolution
publication_status: published
publisher: Nature Publishing Group
publist_id: '7987'
quality_controlled: '1'
related_material:
  record:
  - id: '5585'
    relation: popular_science
    status: public
  - id: '6371'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Evolutionary potential of transcription factors for gene regulatory rewiring
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2
year: '2018'
...
---
_id: '6728'
abstract:
- lang: eng
  text: Polar codes are a channel coding scheme for the next generation of wireless
    communications standard (5G). The belief propagation (BP) decoder allows for parallel
    decoding of polar codes, making it suitable for high throughput applications.
    However, the error-correction performance of polar codes under BP decoding is
    far from the requirements of 5G. It has been shown that the error-correction performance
    of BP can be improved if the decoding is performed on multiple permuted factor
    graphs of polar codes. However, a different BP decoding scheduling is required
    for each factor graph permutation which results in the design of a different decoder
    for each permutation. Moreover, the selection of the different factor graph permutations
    is at random, which prevents the decoder to achieve a desirable error correction
    performance with a small number of permutations. In this paper, we first show
    that the permutations on the factor graph can be mapped into suitable permutations
    on the codeword positions. As a result, we can make use of a single decoder for
    all the permutations. In addition, we introduce a method to construct a set of
    predetermined permutations which can provide the correct codeword if the decoding
    fails on the original permutation. We show that for the 5G polar code of length
    1024, the error-correction performance of the proposed decoder is more than 0.25
    dB better than that of the BP decoder with the same number of random permutations
    at the frame error rate of 10 -4 .
arxiv: 1
author:
- first_name: Nghia
  full_name: Doan, Nghia
  last_name: Doan
- first_name: Seyyed Ali
  full_name: Hashemi, Seyyed Ali
  last_name: Hashemi
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
- first_name: Warren J.
  full_name: Gross, Warren J.
  last_name: Gross
citation:
  ama: 'Doan N, Hashemi SA, Mondelli M, Gross WJ. On the decoding of polar codes on
    permuted factor graphs. In: <i>2018 IEEE Global Communications Conference </i>.
    IEEE; 2018. doi:<a href="https://doi.org/10.1109/glocom.2018.8647308">10.1109/glocom.2018.8647308</a>'
  apa: 'Doan, N., Hashemi, S. A., Mondelli, M., &#38; Gross, W. J. (2018). On the
    decoding of polar codes on permuted factor graphs. In <i>2018 IEEE Global Communications
    Conference </i>. Abu Dhabi, United Arab Emirates: IEEE. <a href="https://doi.org/10.1109/glocom.2018.8647308">https://doi.org/10.1109/glocom.2018.8647308</a>'
  chicago: Doan, Nghia, Seyyed Ali Hashemi, Marco Mondelli, and Warren J. Gross. “On
    the Decoding of Polar Codes on Permuted Factor Graphs.” In <i>2018 IEEE Global
    Communications Conference </i>. IEEE, 2018. <a href="https://doi.org/10.1109/glocom.2018.8647308">https://doi.org/10.1109/glocom.2018.8647308</a>.
  ieee: N. Doan, S. A. Hashemi, M. Mondelli, and W. J. Gross, “On the decoding of
    polar codes on permuted factor graphs,” in <i>2018 IEEE Global Communications
    Conference </i>, Abu Dhabi, United Arab Emirates, 2018.
  ista: 'Doan N, Hashemi SA, Mondelli M, Gross WJ. 2018. On the decoding of polar
    codes on permuted factor graphs. 2018 IEEE Global Communications Conference .
    GLOBECOM: Global Communications Conference.'
  mla: Doan, Nghia, et al. “On the Decoding of Polar Codes on Permuted Factor Graphs.”
    <i>2018 IEEE Global Communications Conference </i>, IEEE, 2018, doi:<a href="https://doi.org/10.1109/glocom.2018.8647308">10.1109/glocom.2018.8647308</a>.
  short: N. Doan, S.A. Hashemi, M. Mondelli, W.J. Gross, in:, 2018 IEEE Global Communications
    Conference , IEEE, 2018.
conference:
  end_date: 2018-12-13
  location: Abu Dhabi, United Arab Emirates
  name: 'GLOBECOM: Global Communications Conference'
  start_date: 2018-12-09
date_created: 2019-07-30T06:43:15Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2021-01-12T08:08:42Z
day: '01'
doi: 10.1109/glocom.2018.8647308
extern: '1'
external_id:
  arxiv:
  - '1806.11195'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1806.11195
month: '12'
oa: 1
oa_version: Preprint
publication: '2018 IEEE Global Communications Conference '
publication_identifier:
  isbn:
  - '9781538647271'
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: On the decoding of polar codes on permuted factor graphs
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '6774'
abstract:
- lang: eng
  text: "A central problem of algebraic topology is to understand the homotopy groups
    \ \U0001D70B\U0001D451(\U0001D44B)  of a topological space X. For the computational
    version of the problem, it is well known that there is no algorithm to decide
    whether the fundamental group  \U0001D70B1(\U0001D44B)  of a given finite simplicial
    complex X is trivial. On the other hand, there are several algorithms that, given
    a finite simplicial complex X that is simply connected (i.e., with   \U0001D70B1(\U0001D44B)
    \ trivial), compute the higher homotopy group   \U0001D70B\U0001D451(\U0001D44B)
    \ for any given   \U0001D451≥2 . However, these algorithms come with a caveat:
    They compute the isomorphism type of   \U0001D70B\U0001D451(\U0001D44B) ,   \U0001D451≥2
    \ as an abstract finitely generated abelian group given by generators and relations,
    but they work with very implicit representations of the elements of   \U0001D70B\U0001D451(\U0001D44B)
    . Converting elements of this abstract group into explicit geometric maps from
    the d-dimensional sphere   \U0001D446\U0001D451  to X has been one of the main
    unsolved problems in the emerging field of computational homotopy theory. Here
    we present an algorithm that, given a simply connected space X, computes   \U0001D70B\U0001D451(\U0001D44B)
    \ and represents its elements as simplicial maps from a suitable triangulation
    of the d-sphere   \U0001D446\U0001D451  to X. For fixed d, the algorithm runs
    in time exponential in   size(\U0001D44B) , the number of simplices of X. Moreover,
    we prove that this is optimal: For every fixed   \U0001D451≥2 , we construct a
    family of simply connected spaces X such that for any simplicial map representing
    a generator of   \U0001D70B\U0001D451(\U0001D44B) , the size of the triangulation
    of   \U0001D446\U0001D451  on which the map is defined, is exponential in size(\U0001D44B)
    ."
article_type: original
author:
- first_name: Marek
  full_name: Filakovský, Marek
  id: 3E8AF77E-F248-11E8-B48F-1D18A9856A87
  last_name: Filakovský
- first_name: Peter
  full_name: Franek, Peter
  id: 473294AE-F248-11E8-B48F-1D18A9856A87
  last_name: Franek
  orcid: 0000-0001-8878-8397
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
- first_name: Stephan Y
  full_name: Zhechev, Stephan Y
  id: 3AA52972-F248-11E8-B48F-1D18A9856A87
  last_name: Zhechev
citation:
  ama: Filakovský M, Franek P, Wagner U, Zhechev SY. Computing simplicial representatives
    of homotopy group elements. <i>Journal of Applied and Computational Topology</i>.
    2018;2(3-4):177-231. doi:<a href="https://doi.org/10.1007/s41468-018-0021-5">10.1007/s41468-018-0021-5</a>
  apa: Filakovský, M., Franek, P., Wagner, U., &#38; Zhechev, S. Y. (2018). Computing
    simplicial representatives of homotopy group elements. <i>Journal of Applied and
    Computational Topology</i>. Springer. <a href="https://doi.org/10.1007/s41468-018-0021-5">https://doi.org/10.1007/s41468-018-0021-5</a>
  chicago: Filakovský, Marek, Peter Franek, Uli Wagner, and Stephan Y Zhechev. “Computing
    Simplicial Representatives of Homotopy Group Elements.” <i>Journal of Applied
    and Computational Topology</i>. Springer, 2018. <a href="https://doi.org/10.1007/s41468-018-0021-5">https://doi.org/10.1007/s41468-018-0021-5</a>.
  ieee: M. Filakovský, P. Franek, U. Wagner, and S. Y. Zhechev, “Computing simplicial
    representatives of homotopy group elements,” <i>Journal of Applied and Computational
    Topology</i>, vol. 2, no. 3–4. Springer, pp. 177–231, 2018.
  ista: Filakovský M, Franek P, Wagner U, Zhechev SY. 2018. Computing simplicial representatives
    of homotopy group elements. Journal of Applied and Computational Topology. 2(3–4),
    177–231.
  mla: Filakovský, Marek, et al. “Computing Simplicial Representatives of Homotopy
    Group Elements.” <i>Journal of Applied and Computational Topology</i>, vol. 2,
    no. 3–4, Springer, 2018, pp. 177–231, doi:<a href="https://doi.org/10.1007/s41468-018-0021-5">10.1007/s41468-018-0021-5</a>.
  short: M. Filakovský, P. Franek, U. Wagner, S.Y. Zhechev, Journal of Applied and
    Computational Topology 2 (2018) 177–231.
date_created: 2019-08-08T06:47:40Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2023-09-07T13:10:36Z
day: '01'
ddc:
- '514'
department:
- _id: UlWa
doi: 10.1007/s41468-018-0021-5
file:
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  file_id: '6775'
  file_name: 2018_JourAppliedComputTopology_Filakovsky.pdf
  file_size: 1056278
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file_date_updated: 2020-07-14T12:47:40Z
has_accepted_license: '1'
intvolume: '         2'
issue: 3-4
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 177-231
project:
- _id: 25F8B9BC-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M01980
  name: Robust invariants of Nonlinear Systems
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  call_identifier: FWF
  name: FWF Open Access Fund
publication: Journal of Applied and Computational Topology
publication_identifier:
  eissn:
  - 2367-1734
  issn:
  - 2367-1726
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
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  - id: '6681'
    relation: dissertation_contains
    status: public
status: public
title: Computing simplicial representatives of homotopy group elements
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2018'
...
---
_id: '68'
abstract:
- lang: eng
  text: The most common assumption made in statistical learning theory is the assumption
    of the independent and identically distributed (i.i.d.) data. While being very
    convenient mathematically, it is often very clearly violated in practice. This
    disparity between the machine learning theory and applications underlies a growing
    demand in the development of algorithms that learn from dependent data and theory
    that can provide generalization guarantees similar to the independent situations.
    This thesis is dedicated to two variants of dependencies that can arise in practice.
    One is a dependence on the level of samples in a single learning task. Another
    dependency type arises in the multi-task setting when the tasks are dependent
    on each other even though the data for them can be i.i.d. In both cases we model
    the data (samples or tasks) as stochastic processes and introduce new algorithms
    for both settings that take into account and exploit the resulting dependencies.
    We prove the theoretical guarantees on the performance of the introduced algorithms
    under different evaluation criteria and, in addition, we compliment the theoretical
    study by the empirical one, where we evaluate some of the algorithms on two real
    world datasets to highlight their practical applicability.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Alexander
  full_name: Zimin, Alexander
  id: 37099E9C-F248-11E8-B48F-1D18A9856A87
  last_name: Zimin
citation:
  ama: Zimin A. Learning from dependent data. 2018. doi:<a href="https://doi.org/10.15479/AT:ISTA:TH1048">10.15479/AT:ISTA:TH1048</a>
  apa: Zimin, A. (2018). <i>Learning from dependent data</i>. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:TH1048">https://doi.org/10.15479/AT:ISTA:TH1048</a>
  chicago: Zimin, Alexander. “Learning from Dependent Data.” Institute of Science
    and Technology Austria, 2018. <a href="https://doi.org/10.15479/AT:ISTA:TH1048">https://doi.org/10.15479/AT:ISTA:TH1048</a>.
  ieee: A. Zimin, “Learning from dependent data,” Institute of Science and Technology
    Austria, 2018.
  ista: Zimin A. 2018. Learning from dependent data. Institute of Science and Technology
    Austria.
  mla: Zimin, Alexander. <i>Learning from Dependent Data</i>. Institute of Science
    and Technology Austria, 2018, doi:<a href="https://doi.org/10.15479/AT:ISTA:TH1048">10.15479/AT:ISTA:TH1048</a>.
  short: A. Zimin, Learning from Dependent Data, Institute of Science and Technology
    Austria, 2018.
date_created: 2018-12-11T11:44:27Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2023-09-07T12:29:07Z
day: '01'
ddc:
- '004'
- '519'
degree_awarded: PhD
department:
- _id: ChLa
doi: 10.15479/AT:ISTA:TH1048
ec_funded: 1
file:
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  creator: dernst
  date_created: 2019-04-09T07:32:47Z
  date_updated: 2020-07-14T12:47:40Z
  file_id: '6253'
  file_name: 2018_Thesis_Zimin.pdf
  file_size: 1036137
  relation: main_file
- access_level: closed
  checksum: da092153cec55c97461bd53c45c5d139
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  creator: dernst
  date_created: 2019-04-09T07:32:47Z
  date_updated: 2020-07-14T12:47:40Z
  file_id: '6254'
  file_name: 2018_Thesis_Zimin_Source.zip
  file_size: 637490
  relation: source_file
file_date_updated: 2020-07-14T12:47:40Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '92'
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '308036'
  name: Lifelong Learning of Visual Scene Understanding
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7986'
pubrep_id: '1048'
status: public
supervisor:
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
title: Learning from dependent data
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '69'
abstract:
- lang: eng
  text: 'A qubit, a unit of quantum information, is essentially any quantum mechanical
    two-level system which can be coherently controlled. Still, to be used for computation,
    it has to fulfill criteria. Qubits, regardless of the system in which they are
    realized, suffer from decoherence. This leads to loss of the information stored
    in the qubit. The upper bound of the time scale on which decoherence happens is
    set by the spin relaxation time. In this thesis I studied a two-level system consisting
    of a Zeeman-split hole spin confined in a quantum dot formed in a Ge hut wire.
    Such Ge hut wires have emerged as a promising material system for the realization
    of spin qubits, due to the combination of two significant properties: long spin
    coherence time as expected for group IV semiconductors due to the low hyperfine
    interaction and a strong valence band spin-orbit coupling. Here, I present how
    to fabricate quantum dot devices suitable for electrical transport measurements.
    Coupled quantum dot devices allowed the realization of a charge sensor, which
    is electrostatically and tunnel coupled to a quantum dot. By integrating the charge
    sensor into a radio-frequency reflectometry setup, I performed for the first time
    single-shot readout measurements of hole spins and extracted the hole spin relaxation
    times in Ge hut wires.'
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Lada
  full_name: Vukušić, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukušić
  orcid: 0000-0003-2424-8636
citation:
  ama: Vukušić L. Charge sensing and spin relaxation times of holes in Ge hut wires.
    2018. doi:<a href="https://doi.org/10.15479/AT:ISTA:TH_1047">10.15479/AT:ISTA:TH_1047</a>
  apa: Vukušić, L. (2018). <i>Charge sensing and spin relaxation times of holes in
    Ge hut wires</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:TH_1047">https://doi.org/10.15479/AT:ISTA:TH_1047</a>
  chicago: Vukušić, Lada. “Charge Sensing and Spin Relaxation Times of Holes in Ge
    Hut Wires.” Institute of Science and Technology Austria, 2018. <a href="https://doi.org/10.15479/AT:ISTA:TH_1047">https://doi.org/10.15479/AT:ISTA:TH_1047</a>.
  ieee: L. Vukušić, “Charge sensing and spin relaxation times of holes in Ge hut wires,”
    Institute of Science and Technology Austria, 2018.
  ista: Vukušić L. 2018. Charge sensing and spin relaxation times of holes in Ge hut
    wires. Institute of Science and Technology Austria.
  mla: Vukušić, Lada. <i>Charge Sensing and Spin Relaxation Times of Holes in Ge Hut
    Wires</i>. Institute of Science and Technology Austria, 2018, doi:<a href="https://doi.org/10.15479/AT:ISTA:TH_1047">10.15479/AT:ISTA:TH_1047</a>.
  short: L. Vukušić, Charge Sensing and Spin Relaxation Times of Holes in Ge Hut Wires,
    Institute of Science and Technology Austria, 2018.
date_created: 2018-12-11T11:44:28Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2023-09-26T15:50:22Z
day: '01'
ddc:
- '530'
- '600'
degree_awarded: PhD
department:
- _id: GeKa
- _id: GradSch
doi: 10.15479/AT:ISTA:TH_1047
file:
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  creator: dernst
  date_created: 2019-04-09T07:00:40Z
  date_updated: 2020-07-14T12:47:44Z
  file_id: '6248'
  file_name: 2018_Thesis_Vukusic_source.zip
  file_size: 53058704
  relation: source_file
file_date_updated: 2020-07-14T12:47:44Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '103'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7985'
pubrep_id: '1047'
related_material:
  record:
  - id: '23'
    relation: part_of_dissertation
    status: public
  - id: '840'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
title: Charge sensing and spin relaxation times of holes in Ge hut wires
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '690'
abstract:
- lang: eng
  text: We consider spectral properties and the edge universality of sparse random
    matrices, the class of random matrices that includes the adjacency matrices of
    the Erdős–Rényi graph model G(N, p). We prove a local law for the eigenvalue density
    up to the spectral edges. Under a suitable condition on the sparsity, we also
    prove that the rescaled extremal eigenvalues exhibit GOE Tracy–Widom fluctuations
    if a deterministic shift of the spectral edge due to the sparsity is included.
    For the adjacency matrix of the Erdős–Rényi graph this establishes the Tracy–Widom
    fluctuations of the second largest eigenvalue when p is much larger than N−2/3
    with a deterministic shift of order (Np)−1.
article_number: 543-616
arxiv: 1
author:
- first_name: Jii
  full_name: Lee, Jii
  last_name: Lee
- first_name: Kevin
  full_name: Schnelli, Kevin
  id: 434AD0AE-F248-11E8-B48F-1D18A9856A87
  last_name: Schnelli
  orcid: 0000-0003-0954-3231
citation:
  ama: Lee J, Schnelli K. Local law and Tracy–Widom limit for sparse random matrices.
    <i>Probability Theory and Related Fields</i>. 2018;171(1-2). doi:<a href="https://doi.org/10.1007/s00440-017-0787-8">10.1007/s00440-017-0787-8</a>
  apa: Lee, J., &#38; Schnelli, K. (2018). Local law and Tracy–Widom limit for sparse
    random matrices. <i>Probability Theory and Related Fields</i>. Springer. <a href="https://doi.org/10.1007/s00440-017-0787-8">https://doi.org/10.1007/s00440-017-0787-8</a>
  chicago: Lee, Jii, and Kevin Schnelli. “Local Law and Tracy–Widom Limit for Sparse
    Random Matrices.” <i>Probability Theory and Related Fields</i>. Springer, 2018.
    <a href="https://doi.org/10.1007/s00440-017-0787-8">https://doi.org/10.1007/s00440-017-0787-8</a>.
  ieee: J. Lee and K. Schnelli, “Local law and Tracy–Widom limit for sparse random
    matrices,” <i>Probability Theory and Related Fields</i>, vol. 171, no. 1–2. Springer,
    2018.
  ista: Lee J, Schnelli K. 2018. Local law and Tracy–Widom limit for sparse random
    matrices. Probability Theory and Related Fields. 171(1–2), 543–616.
  mla: Lee, Jii, and Kevin Schnelli. “Local Law and Tracy–Widom Limit for Sparse Random
    Matrices.” <i>Probability Theory and Related Fields</i>, vol. 171, no. 1–2, 543–616,
    Springer, 2018, doi:<a href="https://doi.org/10.1007/s00440-017-0787-8">10.1007/s00440-017-0787-8</a>.
  short: J. Lee, K. Schnelli, Probability Theory and Related Fields 171 (2018).
date_created: 2018-12-11T11:47:56Z
date_published: 2018-06-14T00:00:00Z
date_updated: 2021-01-12T08:09:33Z
day: '14'
department:
- _id: LaEr
doi: 10.1007/s00440-017-0787-8
ec_funded: 1
external_id:
  arxiv:
  - '1605.08767'
intvolume: '       171'
issue: 1-2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1605.08767
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Probability Theory and Related Fields
publication_status: published
publisher: Springer
publist_id: '7017'
quality_controlled: '1'
scopus_import: 1
status: public
title: Local law and Tracy–Widom limit for sparse random matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 171
year: '2018'
...
---
_id: '691'
abstract:
- lang: eng
  text: "Background: Transport protein particle (TRAPP) is a multisubunit complex
    that regulates membrane trafficking through the Golgi apparatus. The clinical
    phenotype associated with mutations in various TRAPP subunits has allowed elucidation
    of their functions in specific tissues. The role of some subunits in human disease,
    however, has not been fully established, and their functions remain uncertain.\r\n\r\nObjective:
    We aimed to expand the range of neurodevelopmental disorders associated with mutations
    in TRAPP subunits by exome sequencing of consanguineous families.\r\n\r\nMethods:
    Linkage and homozygosity mapping and candidate gene analysis were used to identify
    homozygous mutations in families. Patient fibroblasts were used to study splicing
    defect and zebrafish to model the disease.\r\n\r\nResults: We identified six individuals
    from three unrelated families with a founder homozygous splice mutation in TRAPPC6B,
    encoding a core subunit of the complex TRAPP I. Patients manifested a neurodevelopmental
    disorder characterised by microcephaly, epilepsy and autistic features, and showed
    splicing defect. Zebrafish trappc6b morphants replicated the human phenotype,
    displaying decreased head size and neuronal hyperexcitability, leading to a lower
    seizure threshold.\r\n\r\nConclusion: This study provides clinical and functional
    evidence of the role of TRAPPC6B in brain development and function."
article_processing_charge: No
article_type: original
author:
- first_name: Isaac
  full_name: Marin Valencia, Isaac
  last_name: Marin Valencia
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Anide
  full_name: Johansen, Anide
  last_name: Johansen
- first_name: Başak
  full_name: Rosti, Başak
  last_name: Rosti
- first_name: Mahmoud
  full_name: Issa, Mahmoud
  last_name: Issa
- first_name: Damir
  full_name: Musaev, Damir
  last_name: Musaev
- first_name: Gifty
  full_name: Bhat, Gifty
  last_name: Bhat
- first_name: Eric
  full_name: Scott, Eric
  last_name: Scott
- first_name: Jennifer
  full_name: Silhavy, Jennifer
  last_name: Silhavy
- first_name: Valentina
  full_name: Stanley, Valentina
  last_name: Stanley
- first_name: Rasim
  full_name: Rosti, Rasim
  last_name: Rosti
- first_name: Jeremy
  full_name: Gleeson, Jeremy
  last_name: Gleeson
- first_name: Farhad
  full_name: Imam, Farhad
  last_name: Imam
- first_name: Maha
  full_name: Zaki, Maha
  last_name: Zaki
- first_name: Joseph
  full_name: Gleeson, Joseph
  last_name: Gleeson
citation:
  ama: Marin Valencia I, Novarino G, Johansen A, et al. A homozygous founder mutation
    in TRAPPC6B associates with a neurodevelopmental disorder characterised by microcephaly
    epilepsy and autistic features. <i>Journal of Medical Genetics</i>. 2018;55(1):48-54.
    doi:<a href="https://doi.org/10.1136/jmedgenet-2017-104627">10.1136/jmedgenet-2017-104627</a>
  apa: Marin Valencia, I., Novarino, G., Johansen, A., Rosti, B., Issa, M., Musaev,
    D., … Gleeson, J. (2018). A homozygous founder mutation in TRAPPC6B associates
    with a neurodevelopmental disorder characterised by microcephaly epilepsy and
    autistic features. <i>Journal of Medical Genetics</i>. BMJ Publishing Group. <a
    href="https://doi.org/10.1136/jmedgenet-2017-104627">https://doi.org/10.1136/jmedgenet-2017-104627</a>
  chicago: Marin Valencia, Isaac, Gaia Novarino, Anide Johansen, Başak Rosti, Mahmoud
    Issa, Damir Musaev, Gifty Bhat, et al. “A Homozygous Founder Mutation in TRAPPC6B
    Associates with a Neurodevelopmental Disorder Characterised by Microcephaly Epilepsy
    and Autistic Features.” <i>Journal of Medical Genetics</i>. BMJ Publishing Group,
    2018. <a href="https://doi.org/10.1136/jmedgenet-2017-104627">https://doi.org/10.1136/jmedgenet-2017-104627</a>.
  ieee: I. Marin Valencia <i>et al.</i>, “A homozygous founder mutation in TRAPPC6B
    associates with a neurodevelopmental disorder characterised by microcephaly epilepsy
    and autistic features,” <i>Journal of Medical Genetics</i>, vol. 55, no. 1. BMJ
    Publishing Group, pp. 48–54, 2018.
  ista: Marin Valencia I, Novarino G, Johansen A, Rosti B, Issa M, Musaev D, Bhat
    G, Scott E, Silhavy J, Stanley V, Rosti R, Gleeson J, Imam F, Zaki M, Gleeson
    J. 2018. A homozygous founder mutation in TRAPPC6B associates with a neurodevelopmental
    disorder characterised by microcephaly epilepsy and autistic features. Journal
    of Medical Genetics. 55(1), 48–54.
  mla: Marin Valencia, Isaac, et al. “A Homozygous Founder Mutation in TRAPPC6B Associates
    with a Neurodevelopmental Disorder Characterised by Microcephaly Epilepsy and
    Autistic Features.” <i>Journal of Medical Genetics</i>, vol. 55, no. 1, BMJ Publishing
    Group, 2018, pp. 48–54, doi:<a href="https://doi.org/10.1136/jmedgenet-2017-104627">10.1136/jmedgenet-2017-104627</a>.
  short: I. Marin Valencia, G. Novarino, A. Johansen, B. Rosti, M. Issa, D. Musaev,
    G. Bhat, E. Scott, J. Silhavy, V. Stanley, R. Rosti, J. Gleeson, F. Imam, M. Zaki,
    J. Gleeson, Journal of Medical Genetics 55 (2018) 48–54.
date_created: 2018-12-11T11:47:57Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2023-10-16T09:55:43Z
day: '01'
department:
- _id: GaNo
doi: 10.1136/jmedgenet-2017-104627
external_id:
  isi:
  - '000418199800007'
  pmid:
  - '28626029'
intvolume: '        55'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056005/
month: '01'
oa: 1
oa_version: Submitted Version
page: 48 - 54
pmid: 1
project:
- _id: 254BA948-B435-11E9-9278-68D0E5697425
  grant_number: '401299'
  name: Probing development and reversibility of autism spectrum disorders
publication: Journal of Medical Genetics
publication_identifier:
  issn:
  - 0022-2593
publication_status: published
publisher: BMJ Publishing Group
publist_id: '7016'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A homozygous founder mutation in TRAPPC6B associates with a neurodevelopmental
  disorder characterised by microcephaly epilepsy and autistic features
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 55
year: '2018'
...
---
_id: '692'
abstract:
- lang: eng
  text: We consider families of confocal conics and two pencils of Apollonian circles
    having the same foci. We will show that these families of curves generate trivial
    3-webs and find the exact formulas describing them.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
citation:
  ama: Akopyan A. 3-Webs generated by confocal conics and circles. <i>Geometriae Dedicata</i>.
    2018;194(1):55-64. doi:<a href="https://doi.org/10.1007/s10711-017-0265-6">10.1007/s10711-017-0265-6</a>
  apa: Akopyan, A. (2018). 3-Webs generated by confocal conics and circles. <i>Geometriae
    Dedicata</i>. Springer. <a href="https://doi.org/10.1007/s10711-017-0265-6">https://doi.org/10.1007/s10711-017-0265-6</a>
  chicago: Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” <i>Geometriae
    Dedicata</i>. Springer, 2018. <a href="https://doi.org/10.1007/s10711-017-0265-6">https://doi.org/10.1007/s10711-017-0265-6</a>.
  ieee: A. Akopyan, “3-Webs generated by confocal conics and circles,” <i>Geometriae
    Dedicata</i>, vol. 194, no. 1. Springer, pp. 55–64, 2018.
  ista: Akopyan A. 2018. 3-Webs generated by confocal conics and circles. Geometriae
    Dedicata. 194(1), 55–64.
  mla: Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” <i>Geometriae
    Dedicata</i>, vol. 194, no. 1, Springer, 2018, pp. 55–64, doi:<a href="https://doi.org/10.1007/s10711-017-0265-6">10.1007/s10711-017-0265-6</a>.
  short: A. Akopyan, Geometriae Dedicata 194 (2018) 55–64.
date_created: 2018-12-11T11:47:57Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-08T11:40:29Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s10711-017-0265-6
ec_funded: 1
external_id:
  isi:
  - '000431418800004'
file:
- access_level: open_access
  checksum: 1febcfc1266486053a069e3425ea3713
  content_type: application/pdf
  creator: kschuh
  date_created: 2020-01-03T11:35:08Z
  date_updated: 2020-07-14T12:47:44Z
  file_id: '7222'
  file_name: 2018_Springer_Akopyan.pdf
  file_size: 1140860
  relation: main_file
file_date_updated: 2020-07-14T12:47:44Z
has_accepted_license: '1'
intvolume: '       194'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 55 - 64
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Geometriae Dedicata
publication_status: published
publisher: Springer
publist_id: '7014'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 3-Webs generated by confocal conics and circles
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 194
year: '2018'
...
---
_id: '6941'
abstract:
- lang: eng
  text: "Bitcoin has become the most successful cryptocurrency ever deployed, and
    its most distinctive feature is that it is decentralized. Its underlying protocol
    (Nakamoto consensus) achieves this by using proof of work, which has the drawback
    that it causes the consumption of vast amounts of energy to maintain the ledger.
    Moreover, Bitcoin mining dynamics have become less distributed over time.\r\n\r\nTowards
    addressing these issues, we propose SpaceMint, a cryptocurrency based on proofs
    of space instead of proofs of work. Miners in SpaceMint dedicate disk space rather
    than computation. We argue that SpaceMint’s design solves or alleviates several
    of Bitcoin’s issues: most notably, its large energy consumption. SpaceMint also
    rewards smaller miners fairly according to their contribution to the network,
    thus incentivizing more distributed participation.\r\n\r\nThis paper adapts proof
    of space to enable its use in cryptocurrency, studies the attacks that can arise
    against a Bitcoin-like blockchain that uses proof of space, and proposes a new
    blockchain format and transaction types to address these attacks. Our prototype
    shows that initializing 1 TB for mining takes about a day (a one-off setup cost),
    and miners spend on average just a fraction of a second per block mined. Finally,
    we provide a game-theoretic analysis modeling SpaceMint as an extensive game (the
    canonical game-theoretic notion for games that take place over time) and show
    that this stylized game satisfies a strong equilibrium notion, thereby arguing
    for SpaceMint ’s stability and consensus."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Sunoo
  full_name: Park, Sunoo
  last_name: Park
- first_name: Albert
  full_name: Kwon, Albert
  last_name: Kwon
- first_name: Georg
  full_name: Fuchsbauer, Georg
  id: 46B4C3EE-F248-11E8-B48F-1D18A9856A87
  last_name: Fuchsbauer
- first_name: Peter
  full_name: Gazi, Peter
  id: 3E0BFE38-F248-11E8-B48F-1D18A9856A87
  last_name: Gazi
- first_name: Joel F
  full_name: Alwen, Joel F
  id: 2A8DFA8C-F248-11E8-B48F-1D18A9856A87
  last_name: Alwen
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Park S, Kwon A, Fuchsbauer G, Gazi P, Alwen JF, Pietrzak KZ. SpaceMint: A
    cryptocurrency based on proofs of space. In: <i>22nd International Conference
    on Financial Cryptography and Data Security</i>. Vol 10957. Springer Nature; 2018:480-499.
    doi:<a href="https://doi.org/10.1007/978-3-662-58387-6_26">10.1007/978-3-662-58387-6_26</a>'
  apa: 'Park, S., Kwon, A., Fuchsbauer, G., Gazi, P., Alwen, J. F., &#38; Pietrzak,
    K. Z. (2018). SpaceMint: A cryptocurrency based on proofs of space. In <i>22nd
    International Conference on Financial Cryptography and Data Security</i> (Vol.
    10957, pp. 480–499). Nieuwpoort, Curacao: Springer Nature. <a href="https://doi.org/10.1007/978-3-662-58387-6_26">https://doi.org/10.1007/978-3-662-58387-6_26</a>'
  chicago: 'Park, Sunoo, Albert Kwon, Georg Fuchsbauer, Peter Gazi, Joel F Alwen,
    and Krzysztof Z Pietrzak. “SpaceMint: A Cryptocurrency Based on Proofs of Space.”
    In <i>22nd International Conference on Financial Cryptography and Data Security</i>,
    10957:480–99. Springer Nature, 2018. <a href="https://doi.org/10.1007/978-3-662-58387-6_26">https://doi.org/10.1007/978-3-662-58387-6_26</a>.'
  ieee: 'S. Park, A. Kwon, G. Fuchsbauer, P. Gazi, J. F. Alwen, and K. Z. Pietrzak,
    “SpaceMint: A cryptocurrency based on proofs of space,” in <i>22nd International
    Conference on Financial Cryptography and Data Security</i>, Nieuwpoort, Curacao,
    2018, vol. 10957, pp. 480–499.'
  ista: 'Park S, Kwon A, Fuchsbauer G, Gazi P, Alwen JF, Pietrzak KZ. 2018. SpaceMint:
    A cryptocurrency based on proofs of space. 22nd International Conference on Financial
    Cryptography and Data Security. FC: Financial Cryptography and Data Security,
    LNCS, vol. 10957, 480–499.'
  mla: 'Park, Sunoo, et al. “SpaceMint: A Cryptocurrency Based on Proofs of Space.”
    <i>22nd International Conference on Financial Cryptography and Data Security</i>,
    vol. 10957, Springer Nature, 2018, pp. 480–99, doi:<a href="https://doi.org/10.1007/978-3-662-58387-6_26">10.1007/978-3-662-58387-6_26</a>.'
  short: S. Park, A. Kwon, G. Fuchsbauer, P. Gazi, J.F. Alwen, K.Z. Pietrzak, in:,
    22nd International Conference on Financial Cryptography and Data Security, Springer
    Nature, 2018, pp. 480–499.
conference:
  end_date: 2018-03-02
  location: Nieuwpoort, Curacao
  name: 'FC: Financial Cryptography and Data Security'
  start_date: 2018-02-26
date_created: 2019-10-14T06:35:38Z
date_published: 2018-12-07T00:00:00Z
date_updated: 2023-09-19T15:02:13Z
day: '07'
department:
- _id: KrPi
doi: 10.1007/978-3-662-58387-6_26
ec_funded: 1
external_id:
  isi:
  - '000540656400026'
intvolume: '     10957'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2015/528
month: '12'
oa: 1
oa_version: Submitted Version
page: 480-499
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '682815'
  name: Teaching Old Crypto New Tricks
publication: 22nd International Conference on Financial Cryptography and Data Security
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783662583869'
  - '9783662583876'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'SpaceMint: A cryptocurrency based on proofs of space'
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10957
year: '2018'
...
---
_id: '7'
abstract:
- lang: eng
  text: Animal social networks are shaped by multiple selection pressures, including
    the need to ensure efficient communication and functioning while simultaneously
    limiting disease transmission. Social animals could potentially further reduce
    epidemic risk by altering their social networks in the presence of pathogens,
    yet there is currently no evidence for such pathogen-triggered responses. We tested
    this hypothesis experimentally in the ant Lasius niger using a combination of
    automated tracking, controlled pathogen exposure, transmission quantification,
    and temporally explicit simulations. Pathogen exposure induced behavioral changes
    in both exposed ants and their nestmates, which helped contain the disease by
    reinforcing key transmission-inhibitory properties of the colony's contact network.
    This suggests that social network plasticity in response to pathogens is an effective
    strategy for mitigating the effects of disease in social groups.
acknowledgement: This project was funded by two European Research Council Advanced
  Grants (Social Life, 249375, and resiliANT, 741491) and two Swiss National Science
  Foundation grants (CR32I3_141063 and 310030_156732) to L.K. and a European Research
  Council Starting Grant (SocialVaccines, 243071) to S.C.
article_processing_charge: No
article_type: original
author:
- first_name: Nathalie
  full_name: Stroeymeyt, Nathalie
  last_name: Stroeymeyt
- first_name: Anna V
  full_name: Grasse, Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- first_name: Alessandro
  full_name: Crespi, Alessandro
  last_name: Crespi
- first_name: Danielle
  full_name: Mersch, Danielle
  last_name: Mersch
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
- first_name: Laurent
  full_name: Keller, Laurent
  last_name: Keller
citation:
  ama: Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. Social network
    plasticity decreases disease transmission in a eusocial insect. <i>Science</i>.
    2018;362(6417):941-945. doi:<a href="https://doi.org/10.1126/science.aat4793">10.1126/science.aat4793</a>
  apa: Stroeymeyt, N., Grasse, A. V., Crespi, A., Mersch, D., Cremer, S., &#38; Keller,
    L. (2018). Social network plasticity decreases disease transmission in a eusocial
    insect. <i>Science</i>. AAAS. <a href="https://doi.org/10.1126/science.aat4793">https://doi.org/10.1126/science.aat4793</a>
  chicago: Stroeymeyt, Nathalie, Anna V Grasse, Alessandro Crespi, Danielle Mersch,
    Sylvia Cremer, and Laurent Keller. “Social Network Plasticity Decreases Disease
    Transmission in a Eusocial Insect.” <i>Science</i>. AAAS, 2018. <a href="https://doi.org/10.1126/science.aat4793">https://doi.org/10.1126/science.aat4793</a>.
  ieee: N. Stroeymeyt, A. V. Grasse, A. Crespi, D. Mersch, S. Cremer, and L. Keller,
    “Social network plasticity decreases disease transmission in a eusocial insect,”
    <i>Science</i>, vol. 362, no. 6417. AAAS, pp. 941–945, 2018.
  ista: Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. 2018. Social
    network plasticity decreases disease transmission in a eusocial insect. Science.
    362(6417), 941–945.
  mla: Stroeymeyt, Nathalie, et al. “Social Network Plasticity Decreases Disease Transmission
    in a Eusocial Insect.” <i>Science</i>, vol. 362, no. 6417, AAAS, 2018, pp. 941–45,
    doi:<a href="https://doi.org/10.1126/science.aat4793">10.1126/science.aat4793</a>.
  short: N. Stroeymeyt, A.V. Grasse, A. Crespi, D. Mersch, S. Cremer, L. Keller, Science
    362 (2018) 941–945.
date_created: 2018-12-11T11:44:07Z
date_published: 2018-11-23T00:00:00Z
date_updated: 2023-10-17T11:50:05Z
day: '23'
department:
- _id: SyCr
doi: 10.1126/science.aat4793
ec_funded: 1
external_id:
  isi:
  - '000451124500041'
intvolume: '       362'
isi: 1
issue: '6417'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://serval.unil.ch/resource/serval:BIB_E9228C205467.P001/REF.pdf
month: '11'
oa: 1
oa_version: Published Version
page: 941 - 945
project:
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '243071'
  name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
    Effects'
publication: Science
publication_identifier:
  issn:
  - 1095-9203
publication_status: published
publisher: AAAS
publist_id: '8049'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/for-ants-unity-is-strength-and-health/
  record:
  - id: '13055'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Social network plasticity decreases disease transmission in a eusocial insect
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 362
year: '2018'
...
---
_id: '70'
abstract:
- lang: eng
  text: We consider the totally asymmetric simple exclusion process in a critical
    scaling parametrized by a≥0, which creates a shock in the particle density of
    order aT−1/3, T the observation time. When starting from step initial data, we
    provide bounds on the limiting law which in particular imply that in the double
    limit lima→∞limT→∞ one recovers the product limit law and the degeneration of
    the correlation length observed at shocks of order 1. This result is shown to
    apply to a general last-passage percolation model. We also obtain bounds on the
    two-point functions of several airy processes.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Peter
  full_name: Nejjar, Peter
  id: 4BF426E2-F248-11E8-B48F-1D18A9856A87
  last_name: Nejjar
citation:
  ama: Nejjar P. Transition to shocks in TASEP and decoupling of last passage times.
    <i>Latin American Journal of Probability and Mathematical Statistics</i>. 2018;15(2):1311-1334.
    doi:<a href="https://doi.org/10.30757/ALEA.v15-49">10.30757/ALEA.v15-49</a>
  apa: Nejjar, P. (2018). Transition to shocks in TASEP and decoupling of last passage
    times. <i>Latin American Journal of Probability and Mathematical Statistics</i>.
    Instituto Nacional de Matematica Pura e Aplicada. <a href="https://doi.org/10.30757/ALEA.v15-49">https://doi.org/10.30757/ALEA.v15-49</a>
  chicago: Nejjar, Peter. “Transition to Shocks in TASEP and Decoupling of Last Passage
    Times.” <i>Latin American Journal of Probability and Mathematical Statistics</i>.
    Instituto Nacional de Matematica Pura e Aplicada, 2018. <a href="https://doi.org/10.30757/ALEA.v15-49">https://doi.org/10.30757/ALEA.v15-49</a>.
  ieee: P. Nejjar, “Transition to shocks in TASEP and decoupling of last passage times,”
    <i>Latin American Journal of Probability and Mathematical Statistics</i>, vol.
    15, no. 2. Instituto Nacional de Matematica Pura e Aplicada, pp. 1311–1334, 2018.
  ista: Nejjar P. 2018. Transition to shocks in TASEP and decoupling of last passage
    times. Latin American Journal of Probability and Mathematical Statistics. 15(2),
    1311–1334.
  mla: Nejjar, Peter. “Transition to Shocks in TASEP and Decoupling of Last Passage
    Times.” <i>Latin American Journal of Probability and Mathematical Statistics</i>,
    vol. 15, no. 2, Instituto Nacional de Matematica Pura e Aplicada, 2018, pp. 1311–34,
    doi:<a href="https://doi.org/10.30757/ALEA.v15-49">10.30757/ALEA.v15-49</a>.
  short: P. Nejjar, Latin American Journal of Probability and Mathematical Statistics
    15 (2018) 1311–1334.
date_created: 2018-12-11T11:44:28Z
date_published: 2018-10-01T00:00:00Z
date_updated: 2023-10-10T13:11:29Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
- _id: JaMa
doi: 10.30757/ALEA.v15-49
ec_funded: 1
external_id:
  arxiv:
  - '1705.08836'
  isi:
  - '000460475800022'
file:
- access_level: open_access
  checksum: 2ded46aa284a836a8cbb34133a64f1cb
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-02-14T09:44:10Z
  date_updated: 2020-07-14T12:47:46Z
  file_id: '5981'
  file_name: 2018_ALEA_Nejjar.pdf
  file_size: 394851
  relation: main_file
file_date_updated: 2020-07-14T12:47:46Z
has_accepted_license: '1'
intvolume: '        15'
isi: 1
issue: '2'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1311-1334
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
publication: Latin American Journal of Probability and Mathematical Statistics
publication_identifier:
  issn:
  - 1980-0436
publication_status: published
publisher: Instituto Nacional de Matematica Pura e Aplicada
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transition to shocks in TASEP and decoupling of last passage times
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2018'
...
---
_id: '703'
abstract:
- lang: eng
  text: We consider the NP-hard problem of MAP-inference for undirected discrete graphical
    models. We propose a polynomial time and practically efficient algorithm for finding
    a part of its optimal solution. Specifically, our algorithm marks some labels
    of the considered graphical model either as (i) optimal, meaning that they belong
    to all optimal solutions of the inference problem; (ii) non-optimal if they provably
    do not belong to any solution. With access to an exact solver of a linear programming
    relaxation to the MAP-inference problem, our algorithm marks the maximal possible
    (in a specified sense) number of labels. We also present a version of the algorithm,
    which has access to a suboptimal dual solver only and still can ensure the (non-)optimality
    for the marked labels, although the overall number of the marked labels may decrease.
    We propose an efficient implementation, which runs in time comparable to a single
    run of a suboptimal dual solver. Our method is well-scalable and shows state-of-the-art
    results on computational benchmarks from machine learning and computer vision.
arxiv: 1
author:
- first_name: Alexander
  full_name: Shekhovtsov, Alexander
  last_name: Shekhovtsov
- first_name: Paul
  full_name: Swoboda, Paul
  id: 446560C6-F248-11E8-B48F-1D18A9856A87
  last_name: Swoboda
- first_name: Bogdan
  full_name: Savchynskyy, Bogdan
  last_name: Savchynskyy
citation:
  ama: Shekhovtsov A, Swoboda P, Savchynskyy B. Maximum persistency via iterative
    relaxed inference with graphical models. <i>IEEE Transactions on Pattern Analysis
    and Machine Intelligence</i>. 2018;40(7):1668-1682. doi:<a href="https://doi.org/10.1109/TPAMI.2017.2730884">10.1109/TPAMI.2017.2730884</a>
  apa: Shekhovtsov, A., Swoboda, P., &#38; Savchynskyy, B. (2018). Maximum persistency
    via iterative relaxed inference with graphical models. <i>IEEE Transactions on
    Pattern Analysis and Machine Intelligence</i>. IEEE. <a href="https://doi.org/10.1109/TPAMI.2017.2730884">https://doi.org/10.1109/TPAMI.2017.2730884</a>
  chicago: Shekhovtsov, Alexander, Paul Swoboda, and Bogdan Savchynskyy. “Maximum
    Persistency via Iterative Relaxed Inference with Graphical Models.” <i>IEEE Transactions
    on Pattern Analysis and Machine Intelligence</i>. IEEE, 2018. <a href="https://doi.org/10.1109/TPAMI.2017.2730884">https://doi.org/10.1109/TPAMI.2017.2730884</a>.
  ieee: A. Shekhovtsov, P. Swoboda, and B. Savchynskyy, “Maximum persistency via iterative
    relaxed inference with graphical models,” <i>IEEE Transactions on Pattern Analysis
    and Machine Intelligence</i>, vol. 40, no. 7. IEEE, pp. 1668–1682, 2018.
  ista: Shekhovtsov A, Swoboda P, Savchynskyy B. 2018. Maximum persistency via iterative
    relaxed inference with graphical models. IEEE Transactions on Pattern Analysis
    and Machine Intelligence. 40(7), 1668–1682.
  mla: Shekhovtsov, Alexander, et al. “Maximum Persistency via Iterative Relaxed Inference
    with Graphical Models.” <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>,
    vol. 40, no. 7, IEEE, 2018, pp. 1668–82, doi:<a href="https://doi.org/10.1109/TPAMI.2017.2730884">10.1109/TPAMI.2017.2730884</a>.
  short: A. Shekhovtsov, P. Swoboda, B. Savchynskyy, IEEE Transactions on Pattern
    Analysis and Machine Intelligence 40 (2018) 1668–1682.
date_created: 2018-12-11T11:48:01Z
date_published: 2018-07-01T00:00:00Z
date_updated: 2021-01-12T08:11:32Z
day: '01'
department:
- _id: VlKo
doi: 10.1109/TPAMI.2017.2730884
external_id:
  arxiv:
  - '1508.07902'
intvolume: '        40'
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1508.07902
month: '07'
oa: 1
oa_version: Preprint
page: 1668-1682
publication: IEEE Transactions on Pattern Analysis and Machine Intelligence
publication_identifier:
  issn:
  - '01628828'
publication_status: published
publisher: IEEE
publist_id: '6992'
quality_controlled: '1'
scopus_import: 1
status: public
title: Maximum persistency via iterative relaxed inference with graphical models
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 40
year: '2018'
...
---
_id: '705'
abstract:
- lang: eng
  text: Although dopamine receptors D1 and D2 play key roles in hippocampal function,
    their synaptic localization within the hippocampus has not been fully elucidated.
    In order to understand precise functions of pre- or postsynaptic dopamine receptors
    (DRs), the development of protocols to differentiate pre- and postsynaptic DRs
    is essential. So far, most studies on determination and quantification of DRs
    did not discriminate between subsynaptic localization. Therefore, the aim of the
    study was to generate a robust workflow for the localization of DRs. This work
    provides the basis for future work on hippocampal DRs, in light that DRs may have
    different functions at pre- or postsynaptic sites. Synaptosomes from rat hippocampi
    isolated by a sucrose gradient protocol were prepared for super-resolution direct
    stochastic optical reconstruction microscopy (dSTORM) using Bassoon as a presynaptic
    zone and Homer1 as postsynaptic density marker. Direct labeling of primary validated
    antibodies against dopamine receptors D1 (D1R) and D2 (D2R) with Alexa Fluor 594
    enabled unequivocal assignment of D1R and D2R to both, pre- and postsynaptic sites.
    D1R immunoreactivity clusters were observed within the presynaptic active zone
    as well as at perisynaptic sites at the edge of the presynaptic active zone. The
    results may be useful for the interpretation of previous studies and the design
    of future work on DRs in the hippocampus. Moreover, the reduction of the complexity
    of brain tissue by the use of synaptosomal preparations and dSTORM technology
    may represent a useful tool for synaptic localization of brain proteins.
article_processing_charge: No
author:
- first_name: Andras
  full_name: Miklosi, Andras
  last_name: Miklosi
- first_name: Giorgia
  full_name: Del Favero, Giorgia
  last_name: Del Favero
- first_name: Tanja
  full_name: Bulat, Tanja
  last_name: Bulat
- first_name: Harald
  full_name: Höger, Harald
  last_name: Höger
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Doris
  full_name: Marko, Doris
  last_name: Marko
- first_name: Gert
  full_name: Lubec, Gert
  last_name: Lubec
citation:
  ama: Miklosi A, Del Favero G, Bulat T, et al. Super resolution microscopical localization
    of dopamine receptors 1 and 2 in rat hippocampal synaptosomes. <i>Molecular Neurobiology</i>.
    2018;55(6):4857 – 4869. doi:<a href="https://doi.org/10.1007/s12035-017-0688-y">10.1007/s12035-017-0688-y</a>
  apa: Miklosi, A., Del Favero, G., Bulat, T., Höger, H., Shigemoto, R., Marko, D.,
    &#38; Lubec, G. (2018). Super resolution microscopical localization of dopamine
    receptors 1 and 2 in rat hippocampal synaptosomes. <i>Molecular Neurobiology</i>.
    Springer. <a href="https://doi.org/10.1007/s12035-017-0688-y">https://doi.org/10.1007/s12035-017-0688-y</a>
  chicago: Miklosi, Andras, Giorgia Del Favero, Tanja Bulat, Harald Höger, Ryuichi
    Shigemoto, Doris Marko, and Gert Lubec. “Super Resolution Microscopical Localization
    of Dopamine Receptors 1 and 2 in Rat Hippocampal Synaptosomes.” <i>Molecular Neurobiology</i>.
    Springer, 2018. <a href="https://doi.org/10.1007/s12035-017-0688-y">https://doi.org/10.1007/s12035-017-0688-y</a>.
  ieee: A. Miklosi <i>et al.</i>, “Super resolution microscopical localization of
    dopamine receptors 1 and 2 in rat hippocampal synaptosomes,” <i>Molecular Neurobiology</i>,
    vol. 55, no. 6. Springer, pp. 4857 – 4869, 2018.
  ista: Miklosi A, Del Favero G, Bulat T, Höger H, Shigemoto R, Marko D, Lubec G.
    2018. Super resolution microscopical localization of dopamine receptors 1 and
    2 in rat hippocampal synaptosomes. Molecular Neurobiology. 55(6), 4857 – 4869.
  mla: Miklosi, Andras, et al. “Super Resolution Microscopical Localization of Dopamine
    Receptors 1 and 2 in Rat Hippocampal Synaptosomes.” <i>Molecular Neurobiology</i>,
    vol. 55, no. 6, Springer, 2018, pp. 4857 – 4869, doi:<a href="https://doi.org/10.1007/s12035-017-0688-y">10.1007/s12035-017-0688-y</a>.
  short: A. Miklosi, G. Del Favero, T. Bulat, H. Höger, R. Shigemoto, D. Marko, G.
    Lubec, Molecular Neurobiology 55 (2018) 4857 – 4869.
date_created: 2018-12-11T11:48:02Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-19T09:58:11Z
day: '01'
department:
- _id: RySh
doi: 10.1007/s12035-017-0688-y
external_id:
  isi:
  - '000431991500025'
intvolume: '        55'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 4857 – 4869
publication: Molecular Neurobiology
publication_status: published
publisher: Springer
publist_id: '6991'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Super resolution microscopical localization of dopamine receptors 1 and 2 in
  rat hippocampal synaptosomes
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 55
year: '2018'
...
