---
_id: '9803'
abstract:
- lang: eng
  text: Understanding the mechanisms causing phenotypic differences between females
    and males has long fascinated evolutionary biologists. An extensive literature
    exists on animal sexual dimorphism but less is known about sex differences in
    plants, particularly the extent of geographical variation in sexual dimorphism
    and its life-cycle dynamics. Here, we investigate patterns of genetically-based
    sexual dimorphism in vegetative and reproductive traits of a wind-pollinated dioecious
    plant, Rumex hastatulus, across three life-cycle stages using open-pollinated
    families from 30 populations spanning the geographic range and chromosomal variation
    (XY and XY1Y2) of the species. The direction and degree of sexual dimorphism was
    highly variable among populations and life-cycle stages. Sex-specific differences
    in reproductive function explained a significant amount of temporal change in
    sexual dimorphism. For several traits, geographical variation in sexual dimorphism
    was associated with bioclimatic parameters, likely due to the differential responses
    of the sexes to climate. We found no systematic differences in sexual dimorphism
    between chromosome races. Sex-specific trait differences in dioecious plants largely
    result from a balance between sexual and natural selection on resource allocation.
    Our results indicate that abiotic factors associated with geographical context
    also play a role in modifying sexual dimorphism during the plant life cycle.
article_processing_charge: No
author:
- first_name: Gemma
  full_name: Puixeu Sala, Gemma
  id: 33AB266C-F248-11E8-B48F-1D18A9856A87
  last_name: Puixeu Sala
  orcid: 0000-0001-8330-1754
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: David
  full_name: Field, David
  last_name: Field
- first_name: Spencer C.H.
  full_name: Barrett, Spencer C.H.
  last_name: Barrett
citation:
  ama: 'Puixeu Sala G, Pickup M, Field D, Barrett SCH. Data from: Variation in sexual
    dimorphism in a wind-pollinated plant: the influence of geographical context and
    life-cycle dynamics. 2019. doi:<a href="https://doi.org/10.5061/dryad.n1701c9">10.5061/dryad.n1701c9</a>'
  apa: 'Puixeu Sala, G., Pickup, M., Field, D., &#38; Barrett, S. C. H. (2019). Data
    from: Variation in sexual dimorphism in a wind-pollinated plant: the influence
    of geographical context and life-cycle dynamics. Dryad. <a href="https://doi.org/10.5061/dryad.n1701c9">https://doi.org/10.5061/dryad.n1701c9</a>'
  chicago: 'Puixeu Sala, Gemma, Melinda Pickup, David Field, and Spencer C.H. Barrett.
    “Data from: Variation in Sexual Dimorphism in a Wind-Pollinated Plant: The Influence
    of Geographical Context and Life-Cycle Dynamics.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.n1701c9">https://doi.org/10.5061/dryad.n1701c9</a>.'
  ieee: 'G. Puixeu Sala, M. Pickup, D. Field, and S. C. H. Barrett, “Data from: Variation
    in sexual dimorphism in a wind-pollinated plant: the influence of geographical
    context and life-cycle dynamics.” Dryad, 2019.'
  ista: 'Puixeu Sala G, Pickup M, Field D, Barrett SCH. 2019. Data from: Variation
    in sexual dimorphism in a wind-pollinated plant: the influence of geographical
    context and life-cycle dynamics, Dryad, <a href="https://doi.org/10.5061/dryad.n1701c9">10.5061/dryad.n1701c9</a>.'
  mla: 'Puixeu Sala, Gemma, et al. <i>Data from: Variation in Sexual Dimorphism in
    a Wind-Pollinated Plant: The Influence of Geographical Context and Life-Cycle
    Dynamics</i>. Dryad, 2019, doi:<a href="https://doi.org/10.5061/dryad.n1701c9">10.5061/dryad.n1701c9</a>.'
  short: G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, (2019).
date_created: 2021-08-06T11:48:42Z
date_published: 2019-07-22T00:00:00Z
date_updated: 2023-08-29T07:17:07Z
day: '22'
department:
- _id: NiBa
- _id: BeVi
doi: 10.5061/dryad.n1701c9
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.n1701c9
month: '07'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '14058'
    relation: used_in_publication
    status: public
  - id: '6831'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Variation in sexual dimorphism in a wind-pollinated plant: the
  influence of geographical context and life-cycle dynamics'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9804'
abstract:
- lang: eng
  text: Evolutionary studies are often limited by missing data that are critical to
    understanding the history of selection. Selection experiments, which reproduce
    rapid evolution under controlled conditions, are excellent tools to study how
    genomes evolve under selection. Here we present a genomic dissection of the Longshanks
    selection experiment, in which mice were selectively bred over 20 generations
    for longer tibiae relative to body mass, resulting in 13% longer tibiae in two
    replicates. We synthesized evolutionary theory, genome sequences and molecular
    genetics to understand the selection response and found that it involved both
    polygenic adaptation and discrete loci of major effect, with the strongest loci
    tending to be selected in parallel between replicates. We show that selection
    may favor de-repression of bone growth through inactivating two limb enhancers
    of an inhibitor, Nkx3-2. Our integrative genomic analyses thus show that it is
    possible to connect individual base-pair changes to the overall selection response.
article_processing_charge: No
author:
- first_name: João Pl
  full_name: Castro, João Pl
  last_name: Castro
- first_name: Michelle N.
  full_name: Yancoskie, Michelle N.
  last_name: Yancoskie
- first_name: Marta
  full_name: Marchini, Marta
  last_name: Marchini
- first_name: Stefanie
  full_name: Belohlavy, Stefanie
  id: 43FE426A-F248-11E8-B48F-1D18A9856A87
  last_name: Belohlavy
  orcid: 0000-0002-9849-498X
- first_name: Layla
  full_name: Hiramatsu, Layla
  last_name: Hiramatsu
- first_name: Marek
  full_name: Kučka, Marek
  last_name: Kučka
- first_name: William H.
  full_name: Beluch, William H.
  last_name: Beluch
- first_name: Ronald
  full_name: Naumann, Ronald
  last_name: Naumann
- first_name: Isabella
  full_name: Skuplik, Isabella
  last_name: Skuplik
- first_name: John
  full_name: Cobb, John
  last_name: Cobb
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Campbell
  full_name: Rolian, Campbell
  last_name: Rolian
- first_name: Yingguang Frank
  full_name: Chan, Yingguang Frank
  last_name: Chan
citation:
  ama: 'Castro JP, Yancoskie MN, Marchini M, et al. Data from: An integrative genomic
    analysis of the Longshanks selection experiment for longer limbs in mice. 2019.
    doi:<a href="https://doi.org/10.5061/dryad.0q2h6tk">10.5061/dryad.0q2h6tk</a>'
  apa: 'Castro, J. P., Yancoskie, M. N., Marchini, M., Belohlavy, S., Hiramatsu, L.,
    Kučka, M., … Chan, Y. F. (2019). Data from: An integrative genomic analysis of
    the Longshanks selection experiment for longer limbs in mice. Dryad. <a href="https://doi.org/10.5061/dryad.0q2h6tk">https://doi.org/10.5061/dryad.0q2h6tk</a>'
  chicago: 'Castro, João Pl, Michelle N. Yancoskie, Marta Marchini, Stefanie Belohlavy,
    Layla Hiramatsu, Marek Kučka, William H. Beluch, et al. “Data from: An Integrative
    Genomic Analysis of the Longshanks Selection Experiment for Longer Limbs in Mice.”
    Dryad, 2019. <a href="https://doi.org/10.5061/dryad.0q2h6tk">https://doi.org/10.5061/dryad.0q2h6tk</a>.'
  ieee: 'J. P. Castro <i>et al.</i>, “Data from: An integrative genomic analysis of
    the Longshanks selection experiment for longer limbs in mice.” Dryad, 2019.'
  ista: 'Castro JP, Yancoskie MN, Marchini M, Belohlavy S, Hiramatsu L, Kučka M, Beluch
    WH, Naumann R, Skuplik I, Cobb J, Barton NH, Rolian C, Chan YF. 2019. Data from:
    An integrative genomic analysis of the Longshanks selection experiment for longer
    limbs in mice, Dryad, <a href="https://doi.org/10.5061/dryad.0q2h6tk">10.5061/dryad.0q2h6tk</a>.'
  mla: 'Castro, João Pl, et al. <i>Data from: An Integrative Genomic Analysis of the
    Longshanks Selection Experiment for Longer Limbs in Mice</i>. Dryad, 2019, doi:<a
    href="https://doi.org/10.5061/dryad.0q2h6tk">10.5061/dryad.0q2h6tk</a>.'
  short: J.P. Castro, M.N. Yancoskie, M. Marchini, S. Belohlavy, L. Hiramatsu, M.
    Kučka, W.H. Beluch, R. Naumann, I. Skuplik, J. Cobb, N.H. Barton, C. Rolian, Y.F.
    Chan, (2019).
date_created: 2021-08-06T11:52:54Z
date_published: 2019-06-06T00:00:00Z
date_updated: 2023-08-29T06:41:51Z
day: '06'
department:
- _id: NiBa
doi: 10.5061/dryad.0q2h6tk
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.0q2h6tk
month: '06'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '6713'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: An integrative genomic analysis of the Longshanks selection experiment
  for longer limbs in mice'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9805'
abstract:
- lang: eng
  text: The spread of adaptive alleles is fundamental to evolution, and in theory,
    this process is well‐understood. However, only rarely can we follow this process—whether
    it originates from the spread of a new mutation, or by introgression from another
    population. In this issue of Molecular Ecology, Hanemaaijer et al. (2018) report
    on a 25‐year long study of the mosquitoes Anopheles gambiae (Figure 1) and Anopheles
    coluzzi in Mali, based on genotypes at 15 single‐nucleotide polymorphism (SNP).
    The species are usually reproductively isolated from each other, but in 2002 and
    2006, bursts of hybridization were observed, when F1 hybrids became abundant.
    Alleles backcrossed from A. gambiae into A. coluzzi, but after the first event,
    these declined over the following years. In contrast, after 2006, an insecticide
    resistance allele that had established in A. gambiae spread into A. coluzzi, and
    rose to high frequency there, over 6 years (~75 generations). Whole genome sequences
    of 74 individuals showed that A. gambiae SNP from across the genome had become
    common in the A. coluzzi population, but that most of these were clustered in
    34 genes around the resistance locus. A new set of SNP from 25 of these genes
    were assayed over time; over the 4 years since near‐fixation of the resistance
    allele; some remained common, whereas others declined. What do these patterns
    tell us about this introgression event?
article_processing_charge: No
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Barton NH. Data from: The consequences of an introgression event. 2019. doi:<a
    href="https://doi.org/10.5061/dryad.2kb6fh4">10.5061/dryad.2kb6fh4</a>'
  apa: 'Barton, N. H. (2019). Data from: The consequences of an introgression event.
    Dryad. <a href="https://doi.org/10.5061/dryad.2kb6fh4">https://doi.org/10.5061/dryad.2kb6fh4</a>'
  chicago: 'Barton, Nicholas H. “Data from: The Consequences of an Introgression Event.”
    Dryad, 2019. <a href="https://doi.org/10.5061/dryad.2kb6fh4">https://doi.org/10.5061/dryad.2kb6fh4</a>.'
  ieee: 'N. H. Barton, “Data from: The consequences of an introgression event.” Dryad,
    2019.'
  ista: 'Barton NH. 2019. Data from: The consequences of an introgression event, Dryad,
    <a href="https://doi.org/10.5061/dryad.2kb6fh4">10.5061/dryad.2kb6fh4</a>.'
  mla: 'Barton, Nicholas H. <i>Data from: The Consequences of an Introgression Event</i>.
    Dryad, 2019, doi:<a href="https://doi.org/10.5061/dryad.2kb6fh4">10.5061/dryad.2kb6fh4</a>.'
  short: N.H. Barton, (2019).
date_created: 2021-08-06T12:03:50Z
date_published: 2019-01-09T00:00:00Z
date_updated: 2023-09-19T10:06:07Z
day: '09'
department:
- _id: NiBa
doi: 10.5061/dryad.2kb6fh4
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.2kb6fh4
month: '01'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '40'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: The consequences of an introgression event'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9806'
abstract:
- lang: eng
  text: 1. Hosts can alter their strategy towards pathogens during their lifetime,
    i.e., they can show phenotypic plasticity in immunity or life history. Immune
    priming is one such example, where a previous encounter with a pathogen confers
    enhanced protection upon secondary challenge, resulting in reduced pathogen load
    (i.e. resistance) and improved host survival. However, an initial encounter might
    also enhance tolerance, particularly to less virulent opportunistic pathogens
    that establish persistent infections. In this scenario, individuals are better
    able to reduce the negative fitness consequences that result from a high pathogen
    load. Finally, previous exposure may also lead to life history adjustments, such
    as terminal investment into reproduction. 2. Using different Drosophila melanogaster
    host genotypes and two bacterial pathogens, Lactococcus lactis and Pseudomonas
    entomophila, we tested if previous exposure results in resistance or tolerance
    and whether it modifies immune gene expression during an acute-phase infection
    (one day post-challenge). We then asked if previous pathogen exposure affects
    chronic-phase pathogen persistence and longer-term survival (28 days post-challenge).
    3. We predicted that previous exposure would increase host resistance to an early
    stage bacterial infection while it might come at a cost to host fecundity tolerance.
    We reasoned that resistance would be due in part to stronger immune gene expression
    after challenge. We expected that previous exposure would improve long-term survival,
    that it would reduce infection persistence, and we expected to find genetic variation
    in these responses. 4. We found that previous exposure to P. entomophila weakened
    host resistance to a second infection independent of genotype and had no effect
    on immune gene expression. Fecundity tolerance showed genotypic variation but
    was not influenced by previous exposure. However, L. lactis persisted as a chronic
    infection, whereas survivors cleared the more pathogenic P. entomophila infection.
    5. To our knowledge, this is the first study that addresses host tolerance to
    bacteria in relation to previous exposure, taking a multi-faceted approach to
    address the topic. Our results suggest that previous exposure comes with transient
    costs to resistance during the early stage of infection in this host-pathogen
    system and that infection persistence may be bacterium-specific.
article_processing_charge: No
author:
- first_name: Megan
  full_name: Kutzer, Megan
  id: 29D0B332-F248-11E8-B48F-1D18A9856A87
  last_name: Kutzer
  orcid: 0000-0002-8696-6978
- first_name: Joachim
  full_name: Kurtz, Joachim
  last_name: Kurtz
- first_name: Sophie A.O.
  full_name: Armitage, Sophie A.O.
  last_name: Armitage
citation:
  ama: 'Kutzer M, Kurtz J, Armitage SAO. Data from: A multi-faceted approach testing
    the effects of previous bacterial exposure on resistance and tolerance. 2019.
    doi:<a href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>'
  apa: 'Kutzer, M., Kurtz, J., &#38; Armitage, S. A. O. (2019). Data from: A multi-faceted
    approach testing the effects of previous bacterial exposure on resistance and
    tolerance. Dryad. <a href="https://doi.org/10.5061/dryad.9kj41f0">https://doi.org/10.5061/dryad.9kj41f0</a>'
  chicago: 'Kutzer, Megan, Joachim Kurtz, and Sophie A.O. Armitage. “Data from: A
    Multi-Faceted Approach Testing the Effects of Previous Bacterial Exposure on Resistance
    and Tolerance.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.9kj41f0">https://doi.org/10.5061/dryad.9kj41f0</a>.'
  ieee: 'M. Kutzer, J. Kurtz, and S. A. O. Armitage, “Data from: A multi-faceted approach
    testing the effects of previous bacterial exposure on resistance and tolerance.”
    Dryad, 2019.'
  ista: 'Kutzer M, Kurtz J, Armitage SAO. 2019. Data from: A multi-faceted approach
    testing the effects of previous bacterial exposure on resistance and tolerance,
    Dryad, <a href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>.'
  mla: 'Kutzer, Megan, et al. <i>Data from: A Multi-Faceted Approach Testing the Effects
    of Previous Bacterial Exposure on Resistance and Tolerance</i>. Dryad, 2019, doi:<a
    href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>.'
  short: M. Kutzer, J. Kurtz, S.A.O. Armitage, (2019).
date_created: 2021-08-06T12:06:40Z
date_published: 2019-02-05T00:00:00Z
date_updated: 2023-08-25T08:04:52Z
day: '05'
department:
- _id: SyCr
doi: 10.5061/dryad.9kj41f0
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.9kj41f0
month: '02'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '6105'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: A multi-faceted approach testing the effects of previous bacterial
  exposure on resistance and tolerance'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9839'
abstract:
- lang: eng
  text: 'More than 100 years after Grigg’s influential analysis of species’ borders,
    the causes of limits to species’ ranges still represent a puzzle that has never
    been understood with clarity. The topic has become especially important recently
    as many scientists have become interested in the potential for species’ ranges
    to shift in response to climate change—and yet nearly all of those studies fail
    to recognise or incorporate evolutionary genetics in a way that relates to theoretical
    developments. I show that range margins can be understood based on just two measurable
    parameters: (i) the fitness cost of dispersal—a measure of environmental heterogeneity—and
    (ii) the strength of genetic drift, which reduces genetic diversity. Together,
    these two parameters define an ‘expansion threshold’: adaptation fails when genetic
    drift reduces genetic diversity below that required for adaptation to a heterogeneous
    environment. When the key parameters drop below this expansion threshold locally,
    a sharp range margin forms. When they drop below this threshold throughout the
    species’ range, adaptation collapses everywhere, resulting in either extinction
    or formation of a fragmented metapopulation. Because the effects of dispersal
    differ fundamentally with dimension, the second parameter—the strength of genetic
    drift—is qualitatively different compared to a linear habitat. In two-dimensional
    habitats, genetic drift becomes effectively independent of selection. It decreases
    with ‘neighbourhood size’—the number of individuals accessible by dispersal within
    one generation. Moreover, in contrast to earlier predictions, which neglected
    evolution of genetic variance and/or stochasticity in two dimensions, dispersal
    into small marginal populations aids adaptation. This is because the reduction
    of both genetic and demographic stochasticity has a stronger effect than the cost
    of dispersal through increased maladaptation. The expansion threshold thus provides
    a novel, theoretically justified, and testable prediction for formation of the
    range margin and collapse of the species’ range.'
article_processing_charge: No
author:
- first_name: Jitka
  full_name: Polechova, Jitka
  id: 3BBFB084-F248-11E8-B48F-1D18A9856A87
  last_name: Polechova
  orcid: 0000-0003-0951-3112
citation:
  ama: 'Polechova J. Data from: Is the sky the limit? On the expansion threshold of
    a species’ range. 2019. doi:<a href="https://doi.org/10.5061/dryad.5vv37">10.5061/dryad.5vv37</a>'
  apa: 'Polechova, J. (2019). Data from: Is the sky the limit? On the expansion threshold
    of a species’ range. Dryad. <a href="https://doi.org/10.5061/dryad.5vv37">https://doi.org/10.5061/dryad.5vv37</a>'
  chicago: 'Polechova, Jitka. “Data from: Is the Sky the Limit? On the Expansion Threshold
    of a Species’ Range.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.5vv37">https://doi.org/10.5061/dryad.5vv37</a>.'
  ieee: 'J. Polechova, “Data from: Is the sky the limit? On the expansion threshold
    of a species’ range.” Dryad, 2019.'
  ista: 'Polechova J. 2019. Data from: Is the sky the limit? On the expansion threshold
    of a species’ range, Dryad, <a href="https://doi.org/10.5061/dryad.5vv37">10.5061/dryad.5vv37</a>.'
  mla: 'Polechova, Jitka. <i>Data from: Is the Sky the Limit? On the Expansion Threshold
    of a Species’ Range</i>. Dryad, 2019, doi:<a href="https://doi.org/10.5061/dryad.5vv37">10.5061/dryad.5vv37</a>.'
  short: J. Polechova, (2019).
date_created: 2021-08-09T13:07:28Z
date_published: 2019-06-22T00:00:00Z
date_updated: 2023-02-23T11:14:30Z
day: '22'
department:
- _id: NiBa
doi: 10.5061/dryad.5vv37
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.5vv37
month: '06'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '315'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Is the sky the limit? On the expansion threshold of a species''
  range'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9890'
abstract:
- lang: eng
  text: Distribution of OGs with mosaic phyletic patterns across species (complete
    genomes only). (CSV 7 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 15 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808802.v1">10.6084/m9.figshare.9808802.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 15 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808802.v1">https://doi.org/10.6084/m9.figshare.9808802.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808802.v1">https://doi.org/10.6084/m9.figshare.9808802.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 15 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 15 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808802.v1">10.6084/m9.figshare.9808802.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 15 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808802.v1">10.6084/m9.figshare.9808802.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-11T14:26:40Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808802.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808802.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
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  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 15 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9892'
abstract:
- lang: eng
  text: Distribution of OGs with mosaic phyletic patterns across species (all genomes).
    (CSV 10 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V
  full_name: Chaplin, Andrei V
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 16 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808814.v1">10.6084/m9.figshare.9808814.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 16 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808814.v1">https://doi.org/10.6084/m9.figshare.9808814.v1</a>
  chicago: Sigalova, Olga M., Andrei V Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808814.v1">https://doi.org/10.6084/m9.figshare.9808814.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 16 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 16 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808814.v1">10.6084/m9.figshare.9808814.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 16 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808814.v1">10.6084/m9.figshare.9808814.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:11:53Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808814.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808814.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 16 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9893'
abstract:
- lang: eng
  text: Summary of peripheral genesa phyletic patterns and tree concordance. (CSV
    26 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 17 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808820.v1">10.6084/m9.figshare.9808820.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 17 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808820.v1">https://doi.org/10.6084/m9.figshare.9808820.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 17 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808820.v1">https://doi.org/10.6084/m9.figshare.9808820.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 17 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 17 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808820.v1">10.6084/m9.figshare.9808820.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 17 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808820.v1">10.6084/m9.figshare.9808820.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:20:10Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808820.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808820.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 17 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9894'
abstract:
- lang: eng
  text: Orthologous families (OFs) derived by MCL clustering of OGs. (CSV 189 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 18 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808826.v1">10.6084/m9.figshare.9808826.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 18 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808826.v1">https://doi.org/10.6084/m9.figshare.9808826.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 18 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808826.v1">https://doi.org/10.6084/m9.figshare.9808826.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 18 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 18 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808826.v1">10.6084/m9.figshare.9808826.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 18 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808826.v1">10.6084/m9.figshare.9808826.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:25:07Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808826.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808826.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 18 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9895'
abstract:
- lang: eng
  text: Additional information on proteins from OG1. (CSV 30 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 19 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808835.v1">10.6084/m9.figshare.9808835.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 19 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808835.v1">https://doi.org/10.6084/m9.figshare.9808835.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 19 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808835.v1">https://doi.org/10.6084/m9.figshare.9808835.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 19 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 19 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808835.v1">10.6084/m9.figshare.9808835.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 19 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808835.v1">10.6084/m9.figshare.9808835.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:44:52Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808835.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808835.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 19 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9896'
abstract:
- lang: eng
  text: Summary of the analysed genomes. (CSV 24 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 1 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808841.v1">10.6084/m9.figshare.9808841.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 1 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808841.v1">https://doi.org/10.6084/m9.figshare.9808841.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 1 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808841.v1">https://doi.org/10.6084/m9.figshare.9808841.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 1 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 1 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808841.v1">10.6084/m9.figshare.9808841.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 1 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808841.v1">10.6084/m9.figshare.9808841.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:50:53Z
date_published: 2019-09-02T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '02'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808841.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808841.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 1 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9897'
abstract:
- lang: eng
  text: Frameshift and nonsense mutations near homopolymeric tracts of OG1 genes.
    Only 374 genes with typical length and domain composition were considered. (CSV
    6 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 20 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808850.v1">10.6084/m9.figshare.9808850.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 20 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808850.v1">https://doi.org/10.6084/m9.figshare.9808850.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 20 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808850.v1">https://doi.org/10.6084/m9.figshare.9808850.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 20 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 20 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808850.v1">10.6084/m9.figshare.9808850.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 20 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808850.v1">10.6084/m9.figshare.9808850.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:58:15Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808850.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808850.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 20 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9898'
abstract:
- lang: eng
  text: All polyN tracts of length 5 or more nucleotides in sequences of genes from
    OG1. Sequences were extracted and scanned prior to automatic correction for frameshifts
    implemented in the RAST pipeline. (CSV 133 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 21 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808859.v1">10.6084/m9.figshare.9808859.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 21 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808859.v1">https://doi.org/10.6084/m9.figshare.9808859.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 21 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808859.v1">https://doi.org/10.6084/m9.figshare.9808859.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 21 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 21 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808859.v1">10.6084/m9.figshare.9808859.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 21 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808859.v1">10.6084/m9.figshare.9808859.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T08:10:23Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808859.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808859.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 21 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9899'
abstract:
- lang: eng
  text: Summary of orthologous groups (OGs) for 227 genomes of genus Chlamydia. (CSV
    362 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 2 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808865.v1">10.6084/m9.figshare.9808865.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 2 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808865.v1">https://doi.org/10.6084/m9.figshare.9808865.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 2 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808865.v1">https://doi.org/10.6084/m9.figshare.9808865.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 2 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 2 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808865.v1">10.6084/m9.figshare.9808865.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 2 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808865.v1">10.6084/m9.figshare.9808865.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T08:18:09Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808865.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808865.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 2 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9900'
abstract:
- lang: eng
  text: Pan-genome statistics by species. (CSV 3 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 5 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808886.v1">10.6084/m9.figshare.9808886.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 5 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808886.v1">https://doi.org/10.6084/m9.figshare.9808886.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 5 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808886.v1">https://doi.org/10.6084/m9.figshare.9808886.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 5 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 5 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808886.v1">10.6084/m9.figshare.9808886.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 5 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808886.v1">10.6084/m9.figshare.9808886.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T08:44:49Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808886.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808886.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 5 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9901'
abstract:
- lang: eng
  text: Clusters of Orthologous Genes (COGs) and corresponding functional categories
    assigned to OGs. (CSV 117 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 9 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808907.v1">10.6084/m9.figshare.9808907.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 9 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808907.v1">https://doi.org/10.6084/m9.figshare.9808907.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808907.v1">https://doi.org/10.6084/m9.figshare.9808907.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 9 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 9 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808907.v1">10.6084/m9.figshare.9808907.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 9 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808907.v1">10.6084/m9.figshare.9808907.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T10:54:03Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808907.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808907.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 9 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '405'
abstract:
- lang: eng
  text: We investigate the quantum Jensen divergences from the viewpoint of joint
    convexity. It turns out that the set of the functions which generate jointly convex
    quantum Jensen divergences on positive matrices coincides with the Matrix Entropy
    Class which has been introduced by Chen and Tropp quite recently.
acknowledgement: The author was supported by the ISTFELLOW program of the Institute
  of Science and Technology Austria (project code IC1027FELL01) and partially supported
  by the Hungarian National Research, Development and Innovation Office – NKFIH (grant
  no. K124152)
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Daniel
  full_name: Virosztek, Daniel
  id: 48DB45DA-F248-11E8-B48F-1D18A9856A87
  last_name: Virosztek
  orcid: 0000-0003-1109-5511
citation:
  ama: Virosztek D. Jointly convex quantum Jensen divergences. <i>Linear Algebra and
    Its Applications</i>. 2019;576:67-78. doi:<a href="https://doi.org/10.1016/j.laa.2018.03.002">10.1016/j.laa.2018.03.002</a>
  apa: Virosztek, D. (2019). Jointly convex quantum Jensen divergences. <i>Linear
    Algebra and Its Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.laa.2018.03.002">https://doi.org/10.1016/j.laa.2018.03.002</a>
  chicago: Virosztek, Daniel. “Jointly Convex Quantum Jensen Divergences.” <i>Linear
    Algebra and Its Applications</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.laa.2018.03.002">https://doi.org/10.1016/j.laa.2018.03.002</a>.
  ieee: D. Virosztek, “Jointly convex quantum Jensen divergences,” <i>Linear Algebra
    and Its Applications</i>, vol. 576. Elsevier, pp. 67–78, 2019.
  ista: Virosztek D. 2019. Jointly convex quantum Jensen divergences. Linear Algebra
    and Its Applications. 576, 67–78.
  mla: Virosztek, Daniel. “Jointly Convex Quantum Jensen Divergences.” <i>Linear Algebra
    and Its Applications</i>, vol. 576, Elsevier, 2019, pp. 67–78, doi:<a href="https://doi.org/10.1016/j.laa.2018.03.002">10.1016/j.laa.2018.03.002</a>.
  short: D. Virosztek, Linear Algebra and Its Applications 576 (2019) 67–78.
date_created: 2018-12-11T11:46:17Z
date_published: 2019-09-01T00:00:00Z
date_updated: 2023-08-24T14:31:47Z
day: '01'
department:
- _id: LaEr
doi: 10.1016/j.laa.2018.03.002
ec_funded: 1
external_id:
  arxiv:
  - '1712.05324'
  isi:
  - '000470955300005'
intvolume: '       576'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1712.05324
month: '09'
oa: 1
oa_version: Preprint
page: 67-78
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Linear Algebra and Its Applications
publication_status: published
publisher: Elsevier
publist_id: '7424'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Jointly convex quantum Jensen divergences
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 576
year: '2019'
...
---
_id: '429'
abstract:
- lang: eng
  text: We consider real symmetric or complex hermitian random matrices with correlated
    entries. We prove local laws for the resolvent and universality of the local eigenvalue
    statistics in the bulk of the spectrum. The correlations have fast decay but are
    otherwise of general form. The key novelty is the detailed stability analysis
    of the corresponding matrix valued Dyson equation whose solution is the deterministic
    limit of the resolvent.
acknowledgement: "Open access funding provided by Institute of Science and Technology
  (IST Austria).\r\n"
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Oskari H
  full_name: Ajanki, Oskari H
  id: 36F2FB7E-F248-11E8-B48F-1D18A9856A87
  last_name: Ajanki
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
citation:
  ama: Ajanki OH, Erdös L, Krüger TH. Stability of the matrix Dyson equation and random
    matrices with correlations. <i>Probability Theory and Related Fields</i>. 2019;173(1-2):293–373.
    doi:<a href="https://doi.org/10.1007/s00440-018-0835-z">10.1007/s00440-018-0835-z</a>
  apa: Ajanki, O. H., Erdös, L., &#38; Krüger, T. H. (2019). Stability of the matrix
    Dyson equation and random matrices with correlations. <i>Probability Theory and
    Related Fields</i>. Springer. <a href="https://doi.org/10.1007/s00440-018-0835-z">https://doi.org/10.1007/s00440-018-0835-z</a>
  chicago: Ajanki, Oskari H, László Erdös, and Torben H Krüger. “Stability of the
    Matrix Dyson Equation and Random Matrices with Correlations.” <i>Probability Theory
    and Related Fields</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00440-018-0835-z">https://doi.org/10.1007/s00440-018-0835-z</a>.
  ieee: O. H. Ajanki, L. Erdös, and T. H. Krüger, “Stability of the matrix Dyson equation
    and random matrices with correlations,” <i>Probability Theory and Related Fields</i>,
    vol. 173, no. 1–2. Springer, pp. 293–373, 2019.
  ista: Ajanki OH, Erdös L, Krüger TH. 2019. Stability of the matrix Dyson equation
    and random matrices with correlations. Probability Theory and Related Fields.
    173(1–2), 293–373.
  mla: Ajanki, Oskari H., et al. “Stability of the Matrix Dyson Equation and Random
    Matrices with Correlations.” <i>Probability Theory and Related Fields</i>, vol.
    173, no. 1–2, Springer, 2019, pp. 293–373, doi:<a href="https://doi.org/10.1007/s00440-018-0835-z">10.1007/s00440-018-0835-z</a>.
  short: O.H. Ajanki, L. Erdös, T.H. Krüger, Probability Theory and Related Fields
    173 (2019) 293–373.
date_created: 2018-12-11T11:46:25Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2023-08-24T14:39:00Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s00440-018-0835-z
ec_funded: 1
external_id:
  isi:
  - '000459396500007'
file:
- access_level: open_access
  checksum: f9354fa5c71f9edd17132588f0dc7d01
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T16:12:08Z
  date_updated: 2020-07-14T12:46:26Z
  file_id: '5720'
  file_name: 2018_ProbTheory_Ajanki.pdf
  file_size: 1201840
  relation: main_file
file_date_updated: 2020-07-14T12:46:26Z
has_accepted_license: '1'
intvolume: '       173'
isi: 1
issue: 1-2
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: 293–373
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Probability Theory and Related Fields
publication_identifier:
  eissn:
  - '14322064'
  issn:
  - '01788051'
publication_status: published
publisher: Springer
publist_id: '7394'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stability of the matrix Dyson equation and random matrices with correlations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 173
year: '2019'
...
---
_id: '439'
abstract:
- lang: eng
  text: "We count points over a finite field on wild character varieties,of Riemann
    surfaces for singularities with regular semisimple leading term. The new feature
    in our counting formulas is the appearance of characters of Yokonuma–Hecke algebras.
    Our result leads to the conjecture that the mixed Hodge polynomials of these character
    varieties agree with previously conjectured perverse Hodge polynomials of certain
    twisted parabolic Higgs moduli spaces, indicating the\r\npossibility of a P =
    W conjecture for a suitable wild Hitchin system."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Tamas
  full_name: Hausel, Tamas
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Martin
  full_name: Mereb, Martin
  id: 43D735EE-F248-11E8-B48F-1D18A9856A87
  last_name: Mereb
- first_name: Michael
  full_name: Wong, Michael
  last_name: Wong
citation:
  ama: Hausel T, Mereb M, Wong M. Arithmetic and representation theory of wild character
    varieties. <i>Journal of the European Mathematical Society</i>. 2019;21(10):2995-3052.
    doi:<a href="https://doi.org/10.4171/JEMS/896">10.4171/JEMS/896</a>
  apa: Hausel, T., Mereb, M., &#38; Wong, M. (2019). Arithmetic and representation
    theory of wild character varieties. <i>Journal of the European Mathematical Society</i>.
    European Mathematical Society. <a href="https://doi.org/10.4171/JEMS/896">https://doi.org/10.4171/JEMS/896</a>
  chicago: Hausel, Tamás, Martin Mereb, and Michael Wong. “Arithmetic and Representation
    Theory of Wild Character Varieties.” <i>Journal of the European Mathematical Society</i>.
    European Mathematical Society, 2019. <a href="https://doi.org/10.4171/JEMS/896">https://doi.org/10.4171/JEMS/896</a>.
  ieee: T. Hausel, M. Mereb, and M. Wong, “Arithmetic and representation theory of
    wild character varieties,” <i>Journal of the European Mathematical Society</i>,
    vol. 21, no. 10. European Mathematical Society, pp. 2995–3052, 2019.
  ista: Hausel T, Mereb M, Wong M. 2019. Arithmetic and representation theory of wild
    character varieties. Journal of the European Mathematical Society. 21(10), 2995–3052.
  mla: Hausel, Tamás, et al. “Arithmetic and Representation Theory of Wild Character
    Varieties.” <i>Journal of the European Mathematical Society</i>, vol. 21, no.
    10, European Mathematical Society, 2019, pp. 2995–3052, doi:<a href="https://doi.org/10.4171/JEMS/896">10.4171/JEMS/896</a>.
  short: T. Hausel, M. Mereb, M. Wong, Journal of the European Mathematical Society
    21 (2019) 2995–3052.
date_created: 2018-12-11T11:46:29Z
date_published: 2019-10-01T00:00:00Z
date_updated: 2023-08-24T14:24:49Z
day: '01'
department:
- _id: TaHa
doi: 10.4171/JEMS/896
ec_funded: 1
external_id:
  arxiv:
  - '1604.03382'
  isi:
  - '000480413600002'
intvolume: '        21'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1604.03382
month: '10'
oa: 1
oa_version: Preprint
page: 2995-3052
project:
- _id: 25E549F4-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '320593'
  name: Arithmetic and physics of Higgs moduli spaces
publication: Journal of the European Mathematical Society
publication_identifier:
  eissn:
  - 1435-9855
publication_status: published
publisher: European Mathematical Society
publist_id: '7384'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arithmetic and representation theory of wild character varieties
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 21
year: '2019'
...
---
_id: '441'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nikita
  full_name: Kalinin, Nikita
  last_name: Kalinin
- first_name: Mikhail
  full_name: Shkolnikov, Mikhail
  id: 35084A62-F248-11E8-B48F-1D18A9856A87
  last_name: Shkolnikov
  orcid: 0000-0002-4310-178X
citation:
  ama: Kalinin N, Shkolnikov M. Tropical formulae for summation over a part of SL(2,Z).
    <i>European Journal of Mathematics</i>. 2019;5(3):909–928. doi:<a href="https://doi.org/10.1007/s40879-018-0218-0">10.1007/s40879-018-0218-0</a>
  apa: Kalinin, N., &#38; Shkolnikov, M. (2019). Tropical formulae for summation over
    a part of SL(2,Z). <i>European Journal of Mathematics</i>. Springer Nature. <a
    href="https://doi.org/10.1007/s40879-018-0218-0">https://doi.org/10.1007/s40879-018-0218-0</a>
  chicago: Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation
    over a Part of SL(2,Z).” <i>European Journal of Mathematics</i>. Springer Nature,
    2019. <a href="https://doi.org/10.1007/s40879-018-0218-0">https://doi.org/10.1007/s40879-018-0218-0</a>.
  ieee: N. Kalinin and M. Shkolnikov, “Tropical formulae for summation over a part
    of SL(2,Z),” <i>European Journal of Mathematics</i>, vol. 5, no. 3. Springer Nature,
    pp. 909–928, 2019.
  ista: Kalinin N, Shkolnikov M. 2019. Tropical formulae for summation over a part
    of SL(2,Z). European Journal of Mathematics. 5(3), 909–928.
  mla: Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation over
    a Part of SL(2,Z).” <i>European Journal of Mathematics</i>, vol. 5, no. 3, Springer
    Nature, 2019, pp. 909–928, doi:<a href="https://doi.org/10.1007/s40879-018-0218-0">10.1007/s40879-018-0218-0</a>.
  short: N. Kalinin, M. Shkolnikov, European Journal of Mathematics 5 (2019) 909–928.
date_created: 2018-12-11T11:46:29Z
date_published: 2019-09-15T00:00:00Z
date_updated: 2021-01-12T07:56:46Z
day: '15'
department:
- _id: TaHa
doi: 10.1007/s40879-018-0218-0
ec_funded: 1
external_id:
  arxiv:
  - '1711.02089'
intvolume: '         5'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1711.02089
month: '09'
oa: 1
oa_version: Preprint
page: 909–928
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: European Journal of Mathematics
publication_identifier:
  eissn:
  - 2199-6768
  issn:
  - 2199-675X
publication_status: published
publisher: Springer Nature
publist_id: '7382'
quality_controlled: '1'
scopus_import: 1
status: public
title: Tropical formulae for summation over a part of SL(2,Z)
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 5
year: '2019'
...
