---
_id: '12601'
abstract:
- lang: eng
  text: Ice cliffs and ponds on debris-covered glaciers have received increased attention
    due to their role in amplifying local melt. However, very few studies have looked
    at these features on the catchment scale to determine their patterns and changes
    in space and time. We have compiled a detailed inventory of cliffs and ponds in
    the Langtang catchment, central Himalaya, from six high-resolution satellite orthoimages
    and DEMs between 2006 and 2015, and a historic orthophoto from 1974. Cliffs cover
    between 1.4% (± 0.4%) in the dry and 3.4% (± 0.9%) in the wet seasons and ponds
    between 0.6% (± 0.1%) and 1.6% (± 0.3%) of the total debris-covered tongues. We
    find large variations between seasons, as cliffs and ponds tend to grow in the
    wetter monsoon period, but there is no obvious trend in total area over the study
    period. The inventory further shows that cliffs are predominately north-facing
    irrespective of the glacier flow direction. Both cliffs and ponds appear in higher
    densities several hundred metres from the terminus in areas where tributaries
    reach the main glacier tongue. On the largest glacier in the catchment ~10% of
    all cliffs and ponds persisted over nearly a decade.
article_processing_charge: No
article_type: original
author:
- first_name: JAKOB F.
  full_name: STEINER, JAKOB F.
  last_name: STEINER
- first_name: PASCAL
  full_name: BURI, PASCAL
  last_name: BURI
- first_name: EVAN S.
  full_name: MILES, EVAN S.
  last_name: MILES
- first_name: SILVAN
  full_name: RAGETTLI, SILVAN
  last_name: RAGETTLI
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
citation:
  ama: 'STEINER JF, BURI P, MILES ES, RAGETTLI S, Pellicciotti F. Supraglacial ice
    cliffs and ponds on debris-covered glaciers: Spatio-temporal distribution and
    characteristics. <i>Journal of Glaciology</i>. 2019;65(252):617-632. doi:<a href="https://doi.org/10.1017/jog.2019.40">10.1017/jog.2019.40</a>'
  apa: 'STEINER, J. F., BURI, P., MILES, E. S., RAGETTLI, S., &#38; Pellicciotti,
    F. (2019). Supraglacial ice cliffs and ponds on debris-covered glaciers: Spatio-temporal
    distribution and characteristics. <i>Journal of Glaciology</i>. Cambridge University
    Press. <a href="https://doi.org/10.1017/jog.2019.40">https://doi.org/10.1017/jog.2019.40</a>'
  chicago: 'STEINER, JAKOB F., PASCAL BURI, EVAN S. MILES, SILVAN RAGETTLI, and Francesca
    Pellicciotti. “Supraglacial Ice Cliffs and Ponds on Debris-Covered Glaciers: Spatio-Temporal
    Distribution and Characteristics.” <i>Journal of Glaciology</i>. Cambridge University
    Press, 2019. <a href="https://doi.org/10.1017/jog.2019.40">https://doi.org/10.1017/jog.2019.40</a>.'
  ieee: 'J. F. STEINER, P. BURI, E. S. MILES, S. RAGETTLI, and F. Pellicciotti, “Supraglacial
    ice cliffs and ponds on debris-covered glaciers: Spatio-temporal distribution
    and characteristics,” <i>Journal of Glaciology</i>, vol. 65, no. 252. Cambridge
    University Press, pp. 617–632, 2019.'
  ista: 'STEINER JF, BURI P, MILES ES, RAGETTLI S, Pellicciotti F. 2019. Supraglacial
    ice cliffs and ponds on debris-covered glaciers: Spatio-temporal distribution
    and characteristics. Journal of Glaciology. 65(252), 617–632.'
  mla: 'STEINER, JAKOB F., et al. “Supraglacial Ice Cliffs and Ponds on Debris-Covered
    Glaciers: Spatio-Temporal Distribution and Characteristics.” <i>Journal of Glaciology</i>,
    vol. 65, no. 252, Cambridge University Press, 2019, pp. 617–32, doi:<a href="https://doi.org/10.1017/jog.2019.40">10.1017/jog.2019.40</a>.'
  short: J.F. STEINER, P. BURI, E.S. MILES, S. RAGETTLI, F. Pellicciotti, Journal
    of Glaciology 65 (2019) 617–632.
date_created: 2023-02-20T08:13:03Z
date_published: 2019-08-01T00:00:00Z
date_updated: 2023-02-28T12:11:07Z
day: '01'
doi: 10.1017/jog.2019.40
extern: '1'
intvolume: '        65'
issue: '252'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1017/jog.2019.40
month: '08'
oa: 1
oa_version: Published Version
page: 617-632
publication: Journal of Glaciology
publication_identifier:
  eissn:
  - 1727-5652
  issn:
  - 0022-1430
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Supraglacial ice cliffs and ponds on debris-covered glaciers: Spatio-temporal
  distribution and characteristics'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 65
year: '2019'
...
---
_id: '12602'
abstract:
- lang: eng
  text: 'This study aims at developing and applying a spatially-distributed coupled
    glacier mass balance and ice-flow model to attribute the response of glaciers
    to natural and anthropogenic climate change. We focus on two glaciers with contrasting
    surface characteristics: a debris-covered glacier (Langtang Glacier in Nepal)
    and a clean-ice glacier (Hintereisferner in Austria). The model is applied from
    the end of the Little Ice Age (1850) to the present-day (2016) and is forced with
    four bias-corrected General Circulation Models (GCMs) from the historical experiment
    of the CMIP5 archive. The selected GCMs represent region-specific warm-dry, warm-wet,
    cold-dry, and cold-wet climate conditions. To isolate the effects of anthropogenic
    climate change on glacier mass balance and flow runs from these GCMs with and
    without further anthropogenic forcing after 1970 until 2016 are selected. The
    outcomes indicate that both glaciers experience the largest reduction in area
    and volume under warm climate conditions, whereas area and volume reductions are
    smaller under cold climate conditions. Simultaneously with changes in glacier
    area and volume, surface velocities generally decrease over time. Without further
    anthropogenic forcing the results reveal a 3% (9%) smaller decline in glacier
    area (volume) for the debris-covered glacier and a 18% (39%) smaller decline in
    glacier area (volume) for the clean-ice glacier. The difference in the magnitude
    between the two glaciers can mainly be attributed to differences in the response
    time of the glaciers, where the clean-ice glacier shows a much faster response
    to climate change. We conclude that the response of the two glaciers can mainly
    be attributed to anthropogenic climate change and that the impact is larger on
    the clean-ice glacier. The outcomes show that the model performs well under different
    climate conditions and that the developed approach can be used for regional-scale
    glacio-hydrological modeling.'
article_number: '143'
article_processing_charge: No
article_type: original
author:
- first_name: René R.
  full_name: Wijngaard, René R.
  last_name: Wijngaard
- first_name: Jakob F.
  full_name: Steiner, Jakob F.
  last_name: Steiner
- first_name: Philip D. A.
  full_name: Kraaijenbrink, Philip D. A.
  last_name: Kraaijenbrink
- first_name: Christoph
  full_name: Klug, Christoph
  last_name: Klug
- first_name: Surendra
  full_name: Adhikari, Surendra
  last_name: Adhikari
- first_name: Argha
  full_name: Banerjee, Argha
  last_name: Banerjee
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
- first_name: Ludovicus P. H.
  full_name: van Beek, Ludovicus P. H.
  last_name: van Beek
- first_name: Marc F. P.
  full_name: Bierkens, Marc F. P.
  last_name: Bierkens
- first_name: Arthur F.
  full_name: Lutz, Arthur F.
  last_name: Lutz
- first_name: Walter W.
  full_name: Immerzeel, Walter W.
  last_name: Immerzeel
citation:
  ama: Wijngaard RR, Steiner JF, Kraaijenbrink PDA, et al. Modeling the response of
    the Langtang Glacier and the Hintereisferner to a changing climate since the Little
    Ice Age. <i>Frontiers in Earth Science</i>. 2019;7. doi:<a href="https://doi.org/10.3389/feart.2019.00143">10.3389/feart.2019.00143</a>
  apa: Wijngaard, R. R., Steiner, J. F., Kraaijenbrink, P. D. A., Klug, C., Adhikari,
    S., Banerjee, A., … Immerzeel, W. W. (2019). Modeling the response of the Langtang
    Glacier and the Hintereisferner to a changing climate since the Little Ice Age.
    <i>Frontiers in Earth Science</i>. Frontiers Media. <a href="https://doi.org/10.3389/feart.2019.00143">https://doi.org/10.3389/feart.2019.00143</a>
  chicago: Wijngaard, René R., Jakob F. Steiner, Philip D. A. Kraaijenbrink, Christoph
    Klug, Surendra Adhikari, Argha Banerjee, Francesca Pellicciotti, et al. “Modeling
    the Response of the Langtang Glacier and the Hintereisferner to a Changing Climate
    since the Little Ice Age.” <i>Frontiers in Earth Science</i>. Frontiers Media,
    2019. <a href="https://doi.org/10.3389/feart.2019.00143">https://doi.org/10.3389/feart.2019.00143</a>.
  ieee: R. R. Wijngaard <i>et al.</i>, “Modeling the response of the Langtang Glacier
    and the Hintereisferner to a changing climate since the Little Ice Age,” <i>Frontiers
    in Earth Science</i>, vol. 7. Frontiers Media, 2019.
  ista: Wijngaard RR, Steiner JF, Kraaijenbrink PDA, Klug C, Adhikari S, Banerjee
    A, Pellicciotti F, van Beek LPH, Bierkens MFP, Lutz AF, Immerzeel WW. 2019. Modeling
    the response of the Langtang Glacier and the Hintereisferner to a changing climate
    since the Little Ice Age. Frontiers in Earth Science. 7, 143.
  mla: Wijngaard, René R., et al. “Modeling the Response of the Langtang Glacier and
    the Hintereisferner to a Changing Climate since the Little Ice Age.” <i>Frontiers
    in Earth Science</i>, vol. 7, 143, Frontiers Media, 2019, doi:<a href="https://doi.org/10.3389/feart.2019.00143">10.3389/feart.2019.00143</a>.
  short: R.R. Wijngaard, J.F. Steiner, P.D.A. Kraaijenbrink, C. Klug, S. Adhikari,
    A. Banerjee, F. Pellicciotti, L.P.H. van Beek, M.F.P. Bierkens, A.F. Lutz, W.W.
    Immerzeel, Frontiers in Earth Science 7 (2019).
date_created: 2023-02-20T08:13:08Z
date_published: 2019-06-04T00:00:00Z
date_updated: 2023-02-28T12:04:48Z
day: '04'
doi: 10.3389/feart.2019.00143
extern: '1'
intvolume: '         7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3389/feart.2019.00143
month: '06'
oa: 1
oa_version: Published Version
publication: Frontiers in Earth Science
publication_identifier:
  issn:
  - 2296-6463
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modeling the response of the Langtang Glacier and the Hintereisferner to a
  changing climate since the Little Ice Age
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2019'
...
---
_id: '12901'
article_processing_charge: No
author:
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Janos
  full_name: Kiss, Janos
  id: 3D3A06F8-F248-11E8-B48F-1D18A9856A87
  last_name: Kiss
- first_name: Stefano
  full_name: Elefante, Stefano
  id: 490F40CE-F248-11E8-B48F-1D18A9856A87
  last_name: Elefante
citation:
  ama: 'Schlögl A, Kiss J, Elefante S. Is Debian suitable for running an HPC Cluster?
    In: <i>AHPC19 - Austrian HPC Meeting 2019 </i>. Institut für Mathematik und wissenschaftliches
    Rechnen der Universität Graz; 2019:25.'
  apa: 'Schlögl, A., Kiss, J., &#38; Elefante, S. (2019). Is Debian suitable for running
    an HPC Cluster? In <i>AHPC19 - Austrian HPC Meeting 2019 </i> (p. 25). Grundlsee,
    Austria: Institut für Mathematik und wissenschaftliches Rechnen der Universität
    Graz.'
  chicago: Schlögl, Alois, Janos Kiss, and Stefano Elefante. “Is Debian Suitable for
    Running an HPC Cluster?” In <i>AHPC19 - Austrian HPC Meeting 2019 </i>, 25. Institut
    für Mathematik und wissenschaftliches Rechnen der Universität Graz, 2019.
  ieee: A. Schlögl, J. Kiss, and S. Elefante, “Is Debian suitable for running an HPC
    Cluster?,” in <i>AHPC19 - Austrian HPC Meeting 2019 </i>, Grundlsee, Austria,
    2019, p. 25.
  ista: 'Schlögl A, Kiss J, Elefante S. 2019. Is Debian suitable for running an HPC
    Cluster? AHPC19 - Austrian HPC Meeting 2019 . AHPC: Austrian HPC Meeting, 25.'
  mla: Schlögl, Alois, et al. “Is Debian Suitable for Running an HPC Cluster?” <i>AHPC19
    - Austrian HPC Meeting 2019 </i>, Institut für Mathematik und wissenschaftliches
    Rechnen der Universität Graz, 2019, p. 25.
  short: A. Schlögl, J. Kiss, S. Elefante, in:, AHPC19 - Austrian HPC Meeting 2019
    , Institut für Mathematik und wissenschaftliches Rechnen der Universität Graz,
    2019, p. 25.
conference:
  end_date: 2019-02-27
  location: Grundlsee, Austria
  name: 'AHPC: Austrian HPC Meeting'
  start_date: 2019-02-25
date_created: 2023-05-05T12:48:48Z
date_published: 2019-02-27T00:00:00Z
date_updated: 2023-05-16T07:29:32Z
day: '27'
ddc:
- '000'
department:
- _id: ScienComp
file:
- access_level: open_access
  checksum: acc8272027faaf30709c51ac5c58ffa4
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-16T07:27:09Z
  date_updated: 2023-05-16T07:27:09Z
  file_id: '12970'
  file_name: 2019_AHPC_Schloegl.pdf
  file_size: 1097603
  relation: main_file
  success: 1
file_date_updated: 2023-05-16T07:27:09Z
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://vsc.ac.at/fileadmin/user_upload/vsc/conferences/ahpc19/BOOKLET_AHPC19.pdf
month: '02'
oa: 1
oa_version: Published Version
page: '25'
publication: 'AHPC19 - Austrian HPC Meeting 2019 '
publication_status: published
publisher: Institut für Mathematik und wissenschaftliches Rechnen der Universität
  Graz
status: public
title: Is Debian suitable for running an HPC Cluster?
type: conference_abstract
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '9726'
abstract:
- lang: eng
  text: A detailed description of the two stochastic models, table of parameters,
    supplementary data for Figures 4 and 5, parameter dependence of the results, and
    an analysis on motors with different force–velocity functions (PDF)
article_processing_charge: No
author:
- first_name: Mehmet C
  full_name: Ucar, Mehmet C
  id: 50B2A802-6007-11E9-A42B-EB23E6697425
  last_name: Ucar
  orcid: 0000-0003-0506-4217
- first_name: Reinhard
  full_name: Lipowsky, Reinhard
  last_name: Lipowsky
citation:
  ama: Ucar MC, Lipowsky R. Supplementary information - Collective force generation
    by molecular motors is determined by strain-induced unbinding. 2019. doi:<a href="https://doi.org/10.1021/acs.nanolett.9b04445.s001">10.1021/acs.nanolett.9b04445.s001</a>
  apa: Ucar, M. C., &#38; Lipowsky, R. (2019). Supplementary information - Collective
    force generation by molecular motors is determined by strain-induced unbinding.
    American Chemical Society . <a href="https://doi.org/10.1021/acs.nanolett.9b04445.s001">https://doi.org/10.1021/acs.nanolett.9b04445.s001</a>
  chicago: Ucar, Mehmet C, and Reinhard Lipowsky. “Supplementary Information - Collective
    Force Generation by Molecular Motors Is Determined by Strain-Induced Unbinding.”
    American Chemical Society , 2019. <a href="https://doi.org/10.1021/acs.nanolett.9b04445.s001">https://doi.org/10.1021/acs.nanolett.9b04445.s001</a>.
  ieee: M. C. Ucar and R. Lipowsky, “Supplementary information - Collective force
    generation by molecular motors is determined by strain-induced unbinding.” American
    Chemical Society , 2019.
  ista: Ucar MC, Lipowsky R. 2019. Supplementary information - Collective force generation
    by molecular motors is determined by strain-induced unbinding, American Chemical
    Society , <a href="https://doi.org/10.1021/acs.nanolett.9b04445.s001">10.1021/acs.nanolett.9b04445.s001</a>.
  mla: Ucar, Mehmet C., and Reinhard Lipowsky. <i>Supplementary Information - Collective
    Force Generation by Molecular Motors Is Determined by Strain-Induced Unbinding</i>.
    American Chemical Society , 2019, doi:<a href="https://doi.org/10.1021/acs.nanolett.9b04445.s001">10.1021/acs.nanolett.9b04445.s001</a>.
  short: M.C. Ucar, R. Lipowsky, (2019).
date_created: 2021-07-27T09:51:46Z
date_published: 2019-12-19T00:00:00Z
date_updated: 2023-08-17T14:07:52Z
day: '19'
department:
- _id: EdHa
doi: 10.1021/acs.nanolett.9b04445.s001
month: '12'
oa_version: Published Version
publisher: 'American Chemical Society '
related_material:
  record:
  - id: '7166'
    relation: used_in_publication
    status: public
status: public
title: Supplementary information - Collective force generation by molecular motors
  is determined by strain-induced unbinding
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9731'
abstract:
- lang: eng
  text: OGs with putative pseudogenes by the number of affected genomes in different
    chlamydial species. Frameshift and nonsense mutations located less than 60 bp
    upstreamof the gene end or present in a single genome from the corresponding OG
    were excluded. (CSV 31 kb)
article_processing_charge: No
author:
- first_name: Olga
  full_name: Sigalova, Olga
  last_name: Sigalova
- first_name: Andrei
  full_name: Chaplin, Andrei
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel
  full_name: Shelyakin, Pavel
  last_name: Shelyakin
- first_name: Vsevolod
  full_name: Filaretov, Vsevolod
  last_name: Filaretov
- first_name: Evgeny
  full_name: Akkuratov, Evgeny
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova O, Chaplin A, Bochkareva O, et al. Additional file 11 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808772.v1">10.6084/m9.figshare.9808772.v1</a>
  apa: Sigalova, O., Chaplin, A., Bochkareva, O., Shelyakin, P., Filaretov, V., Akkuratov,
    E., … Gelfand, M. S. (2019). Additional file 11 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction.
    Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808772.v1">https://doi.org/10.6084/m9.figshare.9808772.v1</a>
  chicago: Sigalova, Olga, Andrei Chaplin, Olga Bochkareva, Pavel Shelyakin, Vsevolod
    Filaretov, Evgeny Akkuratov, Valentina Burskaia, and Mikhail S. Gelfand. “Additional
    File 11 of Chlamydia Pan-Genomic Analysis Reveals Balance between Host Adaptation
    and Selective Pressure to Genome Reduction.” Springer Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808772.v1">https://doi.org/10.6084/m9.figshare.9808772.v1</a>.
  ieee: O. Sigalova <i>et al.</i>, “Additional file 11 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction.”
    Springer Nature, 2019.
  ista: Sigalova O, Chaplin A, Bochkareva O, Shelyakin P, Filaretov V, Akkuratov E,
    Burskaia V, Gelfand MS. 2019. Additional file 11 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808772.v1">10.6084/m9.figshare.9808772.v1</a>.
  mla: Sigalova, Olga, et al. <i>Additional File 11 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808772.v1">10.6084/m9.figshare.9808772.v1</a>.
  short: O. Sigalova, A. Chaplin, O. Bochkareva, P. Shelyakin, V. Filaretov, E. Akkuratov,
    V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-07-27T14:09:11Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808772.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808772.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 11 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9783'
abstract:
- lang: eng
  text: Predicted frameshift and nonsense mutations in Chlamydial pan-genome. For
    the analysis of putative pseudogenes, events located less than 60 bp. away from
    gene end or present in a single genome from the corresponding OG were excluded.
    (CSV 600 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 10 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808760.v1">10.6084/m9.figshare.9808760.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 10 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808760.v1">https://doi.org/10.6084/m9.figshare.9808760.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 10 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808760.v1">https://doi.org/10.6084/m9.figshare.9808760.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 10 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 10 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808760.v1">10.6084/m9.figshare.9808760.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 10 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808760.v1">10.6084/m9.figshare.9808760.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-06T07:59:56Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808760.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808760.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
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status: public
title: Additional file 10 of Chlamydia pan-genomic analysis reveals balance between
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type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
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...
---
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abstract:
- lang: eng
  text: 'Additional file 1: Table S1. Kinetics of MDA-MB-231 cell growth in either
    the presence or absence of 100Â mg/L glyphosate. Cell counts are given at day-1
    of seeding flasks and following 6-days of continuous culture. Note: no differences
    in cell numbers were observed between negative control and glyphosate treated
    cultures.'
article_processing_charge: No
author:
- first_name: Michael N.
  full_name: Antoniou, Michael N.
  last_name: Antoniou
- first_name: Armel
  full_name: Nicolas, Armel
  id: 2A103192-F248-11E8-B48F-1D18A9856A87
  last_name: Nicolas
- first_name: Robin
  full_name: Mesnage, Robin
  last_name: Mesnage
- first_name: Martina
  full_name: Biserni, Martina
  last_name: Biserni
- first_name: Francesco V.
  full_name: Rao, Francesco V.
  last_name: Rao
- first_name: Cristina Vazquez
  full_name: Martin, Cristina Vazquez
  last_name: Martin
citation:
  ama: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. MOESM1 of
    Glyphosate does not substitute for glycine in proteins of actively dividing mammalian
    cells. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9411761.v1">10.6084/m9.figshare.9411761.v1</a>
  apa: Antoniou, M. N., Nicolas, A., Mesnage, R., Biserni, M., Rao, F. V., &#38; Martin,
    C. V. (2019). MOESM1 of Glyphosate does not substitute for glycine in proteins
    of actively dividing mammalian cells. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9411761.v1">https://doi.org/10.6084/m9.figshare.9411761.v1</a>
  chicago: Antoniou, Michael N., Armel Nicolas, Robin Mesnage, Martina Biserni, Francesco
    V. Rao, and Cristina Vazquez Martin. “MOESM1 of Glyphosate Does Not Substitute
    for Glycine in Proteins of Actively Dividing Mammalian Cells.” Springer Nature,
    2019. <a href="https://doi.org/10.6084/m9.figshare.9411761.v1">https://doi.org/10.6084/m9.figshare.9411761.v1</a>.
  ieee: M. N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F. V. Rao, and C. V. Martin,
    “MOESM1 of Glyphosate does not substitute for glycine in proteins of actively
    dividing mammalian cells.” Springer Nature, 2019.
  ista: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. 2019. MOESM1
    of Glyphosate does not substitute for glycine in proteins of actively dividing
    mammalian cells, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9411761.v1">10.6084/m9.figshare.9411761.v1</a>.
  mla: Antoniou, Michael N., et al. <i>MOESM1 of Glyphosate Does Not Substitute for
    Glycine in Proteins of Actively Dividing Mammalian Cells</i>. Springer Nature,
    2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9411761.v1">10.6084/m9.figshare.9411761.v1</a>.
  short: M.N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F.V. Rao, C.V. Martin,
    (2019).
date_created: 2021-08-06T08:14:05Z
date_published: 2019-08-09T00:00:00Z
date_updated: 2023-02-23T12:52:29Z
day: '09'
department:
- _id: LifeSc
doi: 10.6084/m9.figshare.9411761.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9411761.v1
month: '08'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
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  - id: '6819'
    relation: used_in_publication
    status: public
status: public
title: MOESM1 of Glyphosate does not substitute for glycine in proteins of actively
  dividing mammalian cells
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
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article_processing_charge: No
author:
- first_name: Jakob
  full_name: Ruess, Jakob
  id: 4A245D00-F248-11E8-B48F-1D18A9856A87
  last_name: Ruess
  orcid: 0000-0003-1615-3282
- first_name: Maros
  full_name: Pleska, Maros
  id: 4569785E-F248-11E8-B48F-1D18A9856A87
  last_name: Pleska
  orcid: 0000-0001-7460-7479
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: Ruess J, Pleska M, Guet CC, Tkačik G. Supporting text and results. 2019. doi:<a
    href="https://doi.org/10.1371/journal.pcbi.1007168.s001">10.1371/journal.pcbi.1007168.s001</a>
  apa: Ruess, J., Pleska, M., Guet, C. C., &#38; Tkačik, G. (2019). Supporting text
    and results. Public Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1007168.s001">https://doi.org/10.1371/journal.pcbi.1007168.s001</a>
  chicago: Ruess, Jakob, Maros Pleska, Calin C Guet, and Gašper Tkačik. “Supporting
    Text and Results.” Public Library of Science, 2019. <a href="https://doi.org/10.1371/journal.pcbi.1007168.s001">https://doi.org/10.1371/journal.pcbi.1007168.s001</a>.
  ieee: J. Ruess, M. Pleska, C. C. Guet, and G. Tkačik, “Supporting text and results.”
    Public Library of Science, 2019.
  ista: Ruess J, Pleska M, Guet CC, Tkačik G. 2019. Supporting text and results, Public
    Library of Science, <a href="https://doi.org/10.1371/journal.pcbi.1007168.s001">10.1371/journal.pcbi.1007168.s001</a>.
  mla: Ruess, Jakob, et al. <i>Supporting Text and Results</i>. Public Library of
    Science, 2019, doi:<a href="https://doi.org/10.1371/journal.pcbi.1007168.s001">10.1371/journal.pcbi.1007168.s001</a>.
  short: J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, (2019).
date_created: 2021-08-06T08:23:43Z
date_published: 2019-07-02T00:00:00Z
date_updated: 2023-08-29T07:10:05Z
day: '02'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1371/journal.pcbi.1007168.s001
month: '07'
oa_version: Published Version
publisher: Public Library of Science
related_material:
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status: public
title: Supporting text and results
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
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article_processing_charge: No
author:
- first_name: Victoria
  full_name: Pokusaeva, Victoria
  id: 3184041C-F248-11E8-B48F-1D18A9856A87
  last_name: Pokusaeva
  orcid: 0000-0001-7660-444X
- first_name: Dinara R.
  full_name: Usmanova, Dinara R.
  last_name: Usmanova
- first_name: Ekaterina V.
  full_name: Putintseva, Ekaterina V.
  last_name: Putintseva
- first_name: Lorena
  full_name: Espinar, Lorena
  last_name: Espinar
- first_name: Karen
  full_name: Sarkisyan, Karen
  id: 39A7BF80-F248-11E8-B48F-1D18A9856A87
  last_name: Sarkisyan
  orcid: 0000-0002-5375-6341
- first_name: Alexander S.
  full_name: Mishin, Alexander S.
  last_name: Mishin
- first_name: Natalya S.
  full_name: Bogatyreva, Natalya S.
  last_name: Bogatyreva
- first_name: Dmitry
  full_name: Ivankov, Dmitry
  id: 49FF1036-F248-11E8-B48F-1D18A9856A87
  last_name: Ivankov
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
- first_name: Inna S.
  full_name: Povolotskaya, Inna S.
  last_name: Povolotskaya
- first_name: Guillaume J.
  full_name: Filion, Guillaume J.
  last_name: Filion
- first_name: Lucas B.
  full_name: Carey, Lucas B.
  last_name: Carey
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Pokusaeva V, Usmanova DR, Putintseva EV, et al. Multiple alignment of His3
    orthologues. 2019. doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s010">10.1371/journal.pgen.1008079.s010</a>
  apa: Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan,
    K., Mishin, A. S., … Kondrashov, F. (2019). Multiple alignment of His3 orthologues.
    Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1008079.s010">https://doi.org/10.1371/journal.pgen.1008079.s010</a>
  chicago: Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena
    Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “Multiple
    Alignment of His3 Orthologues.” Public Library of Science, 2019. <a href="https://doi.org/10.1371/journal.pgen.1008079.s010">https://doi.org/10.1371/journal.pgen.1008079.s010</a>.
  ieee: V. Pokusaeva <i>et al.</i>, “Multiple alignment of His3 orthologues.” Public
    Library of Science, 2019.
  ista: Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS,
    Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ,
    Carey LB, Kondrashov F. 2019. Multiple alignment of His3 orthologues, Public Library
    of Science, <a href="https://doi.org/10.1371/journal.pgen.1008079.s010">10.1371/journal.pgen.1008079.s010</a>.
  mla: Pokusaeva, Victoria, et al. <i>Multiple Alignment of His3 Orthologues</i>.
    Public Library of Science, 2019, doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s010">10.1371/journal.pgen.1008079.s010</a>.
  short: V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S.
    Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya,
    G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
date_created: 2021-08-06T08:38:50Z
date_published: 2019-04-10T00:00:00Z
date_updated: 2023-08-25T10:30:36Z
day: '10'
department:
- _id: FyKo
doi: 10.1371/journal.pgen.1008079.s010
month: '04'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '6419'
    relation: used_in_publication
    status: public
status: public
title: Multiple alignment of His3 orthologues
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
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author:
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  full_name: Pokusaeva, Victoria
  id: 3184041C-F248-11E8-B48F-1D18A9856A87
  last_name: Pokusaeva
  orcid: 0000-0001-7660-444X
- first_name: Dinara R.
  full_name: Usmanova, Dinara R.
  last_name: Usmanova
- first_name: Ekaterina V.
  full_name: Putintseva, Ekaterina V.
  last_name: Putintseva
- first_name: Lorena
  full_name: Espinar, Lorena
  last_name: Espinar
- first_name: Karen
  full_name: Sarkisyan, Karen
  id: 39A7BF80-F248-11E8-B48F-1D18A9856A87
  last_name: Sarkisyan
  orcid: 0000-0002-5375-6341
- first_name: Alexander S.
  full_name: Mishin, Alexander S.
  last_name: Mishin
- first_name: Natalya S.
  full_name: Bogatyreva, Natalya S.
  last_name: Bogatyreva
- first_name: Dmitry
  full_name: Ivankov, Dmitry
  id: 49FF1036-F248-11E8-B48F-1D18A9856A87
  last_name: Ivankov
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
- first_name: Inna S.
  full_name: Povolotskaya, Inna S.
  last_name: Povolotskaya
- first_name: Guillaume J.
  full_name: Filion, Guillaume J.
  last_name: Filion
- first_name: Lucas B.
  full_name: Carey, Lucas B.
  last_name: Carey
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Pokusaeva V, Usmanova DR, Putintseva EV, et al. A statistical summary of segment
    libraries and sequencing results. 2019. doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>
  apa: Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan,
    K., Mishin, A. S., … Kondrashov, F. (2019). A statistical summary of segment libraries
    and sequencing results. Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>
  chicago: Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena
    Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “A
    Statistical Summary of Segment Libraries and Sequencing Results.” Public Library
    of Science, 2019. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>.
  ieee: V. Pokusaeva <i>et al.</i>, “A statistical summary of segment libraries and
    sequencing results.” Public Library of Science, 2019.
  ista: Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS,
    Bogatyreva NS, Ivankov D, Akopyan A, Avvakumov S, Povolotskaya IS, Filion GJ,
    Carey LB, Kondrashov F. 2019. A statistical summary of segment libraries and sequencing
    results, Public Library of Science, <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  mla: Pokusaeva, Victoria, et al. <i>A Statistical Summary of Segment Libraries and
    Sequencing Results</i>. Public Library of Science, 2019, doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  short: V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S.
    Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya,
    G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
date_created: 2021-08-06T08:50:15Z
date_published: 2019-04-10T00:00:00Z
date_updated: 2023-08-25T10:30:36Z
day: '10'
department:
- _id: FyKo
doi: 10.1371/journal.pgen.1008079.s011
month: '04'
oa_version: Published Version
publisher: Public Library of Science
related_material:
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  - id: '6419'
    relation: used_in_publication
    status: public
status: public
title: A statistical summary of segment libraries and sequencing results
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9797'
article_processing_charge: No
author:
- first_name: Victoria
  full_name: Pokusaeva, Victoria
  id: 3184041C-F248-11E8-B48F-1D18A9856A87
  last_name: Pokusaeva
  orcid: 0000-0001-7660-444X
- first_name: Dinara R.
  full_name: Usmanova, Dinara R.
  last_name: Usmanova
- first_name: Ekaterina V.
  full_name: Putintseva, Ekaterina V.
  last_name: Putintseva
- first_name: Lorena
  full_name: Espinar, Lorena
  last_name: Espinar
- first_name: Karen
  full_name: Sarkisyan, Karen
  id: 39A7BF80-F248-11E8-B48F-1D18A9856A87
  last_name: Sarkisyan
  orcid: 0000-0002-5375-6341
- first_name: Alexander S.
  full_name: Mishin, Alexander S.
  last_name: Mishin
- first_name: Natalya S.
  full_name: Bogatyreva, Natalya S.
  last_name: Bogatyreva
- first_name: Dmitry
  full_name: Ivankov, Dmitry
  id: 49FF1036-F248-11E8-B48F-1D18A9856A87
  last_name: Ivankov
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Inna S.
  full_name: Povolotskaya, Inna S.
  last_name: Povolotskaya
- first_name: Guillaume J.
  full_name: Filion, Guillaume J.
  last_name: Filion
- first_name: Lucas B.
  full_name: Carey, Lucas B.
  last_name: Carey
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Pokusaeva V, Usmanova DR, Putintseva EV, et al. A statistical summary of segment
    libraries and sequencing results. 2019. doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>
  apa: Pokusaeva, V., Usmanova, D. R., Putintseva, E. V., Espinar, L., Sarkisyan,
    K., Mishin, A. S., … Kondrashov, F. (2019). A statistical summary of segment libraries
    and sequencing results. Public Library of Science. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>
  chicago: Pokusaeva, Victoria, Dinara R. Usmanova, Ekaterina V. Putintseva, Lorena
    Espinar, Karen Sarkisyan, Alexander S. Mishin, Natalya S. Bogatyreva, et al. “A
    Statistical Summary of Segment Libraries and Sequencing Results.” Public Library
    of Science, 2019. <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">https://doi.org/10.1371/journal.pgen.1008079.s011</a>.
  ieee: V. Pokusaeva <i>et al.</i>, “A statistical summary of segment libraries and
    sequencing results.” Public Library of Science, 2019.
  ista: Pokusaeva V, Usmanova DR, Putintseva EV, Espinar L, Sarkisyan K, Mishin AS,
    Bogatyreva NS, Ivankov D, Akopyan A, Povolotskaya IS, Filion GJ, Carey LB, Kondrashov
    F. 2019. A statistical summary of segment libraries and sequencing results, Public
    Library of Science, <a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  mla: Pokusaeva, Victoria, et al. <i>A Statistical Summary of Segment Libraries and
    Sequencing Results</i>. Public Library of Science, 2019, doi:<a href="https://doi.org/10.1371/journal.pgen.1008079.s011">10.1371/journal.pgen.1008079.s011</a>.
  short: V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S.
    Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, I.S. Povolotskaya, G.J. Filion,
    L.B. Carey, F. Kondrashov, (2019).
date_created: 2021-08-06T11:08:20Z
date_published: 2019-04-10T00:00:00Z
date_updated: 2023-08-25T10:30:36Z
day: '10'
department:
- _id: FyKo
doi: 10.1371/journal.pgen.1008079.s011
month: '04'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '6419'
    relation: used_in_publication
    status: public
status: public
title: A statistical summary of segment libraries and sequencing results
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9801'
article_processing_charge: No
author:
- first_name: Richard M.
  full_name: Merrill, Richard M.
  last_name: Merrill
- first_name: Pasi
  full_name: Rastas, Pasi
  last_name: Rastas
- first_name: Simon H.
  full_name: Martin, Simon H.
  last_name: Martin
- first_name: Maria C
  full_name: Melo Hurtado, Maria C
  id: 386D7308-F248-11E8-B48F-1D18A9856A87
  last_name: Melo Hurtado
- first_name: Sarah
  full_name: Barker, Sarah
  last_name: Barker
- first_name: John
  full_name: Davey, John
  last_name: Davey
- first_name: W. Owen
  full_name: Mcmillan, W. Owen
  last_name: Mcmillan
- first_name: Chris D.
  full_name: Jiggins, Chris D.
  last_name: Jiggins
citation:
  ama: Merrill RM, Rastas P, Martin SH, et al. Raw behavioral data. 2019. doi:<a href="https://doi.org/10.1371/journal.pbio.2005902.s006">10.1371/journal.pbio.2005902.s006</a>
  apa: Merrill, R. M., Rastas, P., Martin, S. H., Melo Hurtado, M. C., Barker, S.,
    Davey, J., … Jiggins, C. D. (2019). Raw behavioral data. Public Library of Science.
    <a href="https://doi.org/10.1371/journal.pbio.2005902.s006">https://doi.org/10.1371/journal.pbio.2005902.s006</a>
  chicago: Merrill, Richard M., Pasi Rastas, Simon H. Martin, Maria C Melo Hurtado,
    Sarah Barker, John Davey, W. Owen Mcmillan, and Chris D. Jiggins. “Raw Behavioral
    Data.” Public Library of Science, 2019. <a href="https://doi.org/10.1371/journal.pbio.2005902.s006">https://doi.org/10.1371/journal.pbio.2005902.s006</a>.
  ieee: R. M. Merrill <i>et al.</i>, “Raw behavioral data.” Public Library of Science,
    2019.
  ista: Merrill RM, Rastas P, Martin SH, Melo Hurtado MC, Barker S, Davey J, Mcmillan
    WO, Jiggins CD. 2019. Raw behavioral data, Public Library of Science, <a href="https://doi.org/10.1371/journal.pbio.2005902.s006">10.1371/journal.pbio.2005902.s006</a>.
  mla: Merrill, Richard M., et al. <i>Raw Behavioral Data</i>. Public Library of Science,
    2019, doi:<a href="https://doi.org/10.1371/journal.pbio.2005902.s006">10.1371/journal.pbio.2005902.s006</a>.
  short: R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey,
    W.O. Mcmillan, C.D. Jiggins, (2019).
date_created: 2021-08-06T11:34:56Z
date_published: 2019-02-07T00:00:00Z
date_updated: 2023-08-24T14:46:23Z
day: '07'
department:
- _id: NiBa
doi: 10.1371/journal.pbio.2005902.s006
month: '02'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '6022'
    relation: used_in_publication
    status: public
status: public
title: Raw behavioral data
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9802'
abstract:
- lang: eng
  text: This paper analyzes how partial selfing in a large source population influences
    its ability to colonize a new habitat via the introduction of a few founder individuals.
    Founders experience inbreeding depression due to partially recessive deleterious
    alleles as well as maladaptation to the new environment due to selection on a
    large number of additive loci. I first introduce a simplified version of the Inbreeding
    History Model (Kelly, 2007) in order to characterize mutation-selection balance
    in a large, partially selfing source population under selection involving multiple
    non-identical loci. I then use individual-based simulations to study the eco-evolutionary
    dynamics of founders establishing in the new habitat under a model of hard selection.
    The study explores how selfing rate shapes establishment probabilities of founders
    via effects on both inbreeding depression and adaptability to the new environment,
    and also distinguishes the effects of selfing on the initial fitness of founders
    from its effects on the long-term adaptive response of the populations they found.
    A high rate of (but not complete) selfing is found to aid establishment over a
    wide range of parameters, even in the absence of mate limitation. The sensitivity
    of the results to assumptions about the nature of polygenic selection are discussed.
article_processing_charge: No
author:
- first_name: Himani
  full_name: Sachdeva, Himani
  id: 42377A0A-F248-11E8-B48F-1D18A9856A87
  last_name: Sachdeva
citation:
  ama: 'Sachdeva H. Data from: Effect of partial selfing and polygenic selection on
    establishment in a new habitat. 2019. doi:<a href="https://doi.org/10.5061/dryad.8tp0900">10.5061/dryad.8tp0900</a>'
  apa: 'Sachdeva, H. (2019). Data from: Effect of partial selfing and polygenic selection
    on establishment in a new habitat. Dryad. <a href="https://doi.org/10.5061/dryad.8tp0900">https://doi.org/10.5061/dryad.8tp0900</a>'
  chicago: 'Sachdeva, Himani. “Data from: Effect of Partial Selfing and Polygenic
    Selection on Establishment in a New Habitat.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.8tp0900">https://doi.org/10.5061/dryad.8tp0900</a>.'
  ieee: 'H. Sachdeva, “Data from: Effect of partial selfing and polygenic selection
    on establishment in a new habitat.” Dryad, 2019.'
  ista: 'Sachdeva H. 2019. Data from: Effect of partial selfing and polygenic selection
    on establishment in a new habitat, Dryad, <a href="https://doi.org/10.5061/dryad.8tp0900">10.5061/dryad.8tp0900</a>.'
  mla: 'Sachdeva, Himani. <i>Data from: Effect of Partial Selfing and Polygenic Selection
    on Establishment in a New Habitat</i>. Dryad, 2019, doi:<a href="https://doi.org/10.5061/dryad.8tp0900">10.5061/dryad.8tp0900</a>.'
  short: H. Sachdeva, (2019).
date_created: 2021-08-06T11:45:11Z
date_published: 2019-07-16T00:00:00Z
date_updated: 2023-08-29T06:43:57Z
day: '16'
department:
- _id: NiBa
doi: 10.5061/dryad.8tp0900
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.8tp0900
month: '07'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '6680'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Effect of partial selfing and polygenic selection on establishment
  in a new habitat'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9803'
abstract:
- lang: eng
  text: Understanding the mechanisms causing phenotypic differences between females
    and males has long fascinated evolutionary biologists. An extensive literature
    exists on animal sexual dimorphism but less is known about sex differences in
    plants, particularly the extent of geographical variation in sexual dimorphism
    and its life-cycle dynamics. Here, we investigate patterns of genetically-based
    sexual dimorphism in vegetative and reproductive traits of a wind-pollinated dioecious
    plant, Rumex hastatulus, across three life-cycle stages using open-pollinated
    families from 30 populations spanning the geographic range and chromosomal variation
    (XY and XY1Y2) of the species. The direction and degree of sexual dimorphism was
    highly variable among populations and life-cycle stages. Sex-specific differences
    in reproductive function explained a significant amount of temporal change in
    sexual dimorphism. For several traits, geographical variation in sexual dimorphism
    was associated with bioclimatic parameters, likely due to the differential responses
    of the sexes to climate. We found no systematic differences in sexual dimorphism
    between chromosome races. Sex-specific trait differences in dioecious plants largely
    result from a balance between sexual and natural selection on resource allocation.
    Our results indicate that abiotic factors associated with geographical context
    also play a role in modifying sexual dimorphism during the plant life cycle.
article_processing_charge: No
author:
- first_name: Gemma
  full_name: Puixeu Sala, Gemma
  id: 33AB266C-F248-11E8-B48F-1D18A9856A87
  last_name: Puixeu Sala
  orcid: 0000-0001-8330-1754
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: David
  full_name: Field, David
  last_name: Field
- first_name: Spencer C.H.
  full_name: Barrett, Spencer C.H.
  last_name: Barrett
citation:
  ama: 'Puixeu Sala G, Pickup M, Field D, Barrett SCH. Data from: Variation in sexual
    dimorphism in a wind-pollinated plant: the influence of geographical context and
    life-cycle dynamics. 2019. doi:<a href="https://doi.org/10.5061/dryad.n1701c9">10.5061/dryad.n1701c9</a>'
  apa: 'Puixeu Sala, G., Pickup, M., Field, D., &#38; Barrett, S. C. H. (2019). Data
    from: Variation in sexual dimorphism in a wind-pollinated plant: the influence
    of geographical context and life-cycle dynamics. Dryad. <a href="https://doi.org/10.5061/dryad.n1701c9">https://doi.org/10.5061/dryad.n1701c9</a>'
  chicago: 'Puixeu Sala, Gemma, Melinda Pickup, David Field, and Spencer C.H. Barrett.
    “Data from: Variation in Sexual Dimorphism in a Wind-Pollinated Plant: The Influence
    of Geographical Context and Life-Cycle Dynamics.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.n1701c9">https://doi.org/10.5061/dryad.n1701c9</a>.'
  ieee: 'G. Puixeu Sala, M. Pickup, D. Field, and S. C. H. Barrett, “Data from: Variation
    in sexual dimorphism in a wind-pollinated plant: the influence of geographical
    context and life-cycle dynamics.” Dryad, 2019.'
  ista: 'Puixeu Sala G, Pickup M, Field D, Barrett SCH. 2019. Data from: Variation
    in sexual dimorphism in a wind-pollinated plant: the influence of geographical
    context and life-cycle dynamics, Dryad, <a href="https://doi.org/10.5061/dryad.n1701c9">10.5061/dryad.n1701c9</a>.'
  mla: 'Puixeu Sala, Gemma, et al. <i>Data from: Variation in Sexual Dimorphism in
    a Wind-Pollinated Plant: The Influence of Geographical Context and Life-Cycle
    Dynamics</i>. Dryad, 2019, doi:<a href="https://doi.org/10.5061/dryad.n1701c9">10.5061/dryad.n1701c9</a>.'
  short: G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, (2019).
date_created: 2021-08-06T11:48:42Z
date_published: 2019-07-22T00:00:00Z
date_updated: 2023-08-29T07:17:07Z
day: '22'
department:
- _id: NiBa
- _id: BeVi
doi: 10.5061/dryad.n1701c9
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.n1701c9
month: '07'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '14058'
    relation: used_in_publication
    status: public
  - id: '6831'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Variation in sexual dimorphism in a wind-pollinated plant: the
  influence of geographical context and life-cycle dynamics'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9804'
abstract:
- lang: eng
  text: Evolutionary studies are often limited by missing data that are critical to
    understanding the history of selection. Selection experiments, which reproduce
    rapid evolution under controlled conditions, are excellent tools to study how
    genomes evolve under selection. Here we present a genomic dissection of the Longshanks
    selection experiment, in which mice were selectively bred over 20 generations
    for longer tibiae relative to body mass, resulting in 13% longer tibiae in two
    replicates. We synthesized evolutionary theory, genome sequences and molecular
    genetics to understand the selection response and found that it involved both
    polygenic adaptation and discrete loci of major effect, with the strongest loci
    tending to be selected in parallel between replicates. We show that selection
    may favor de-repression of bone growth through inactivating two limb enhancers
    of an inhibitor, Nkx3-2. Our integrative genomic analyses thus show that it is
    possible to connect individual base-pair changes to the overall selection response.
article_processing_charge: No
author:
- first_name: João Pl
  full_name: Castro, João Pl
  last_name: Castro
- first_name: Michelle N.
  full_name: Yancoskie, Michelle N.
  last_name: Yancoskie
- first_name: Marta
  full_name: Marchini, Marta
  last_name: Marchini
- first_name: Stefanie
  full_name: Belohlavy, Stefanie
  id: 43FE426A-F248-11E8-B48F-1D18A9856A87
  last_name: Belohlavy
  orcid: 0000-0002-9849-498X
- first_name: Layla
  full_name: Hiramatsu, Layla
  last_name: Hiramatsu
- first_name: Marek
  full_name: Kučka, Marek
  last_name: Kučka
- first_name: William H.
  full_name: Beluch, William H.
  last_name: Beluch
- first_name: Ronald
  full_name: Naumann, Ronald
  last_name: Naumann
- first_name: Isabella
  full_name: Skuplik, Isabella
  last_name: Skuplik
- first_name: John
  full_name: Cobb, John
  last_name: Cobb
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Campbell
  full_name: Rolian, Campbell
  last_name: Rolian
- first_name: Yingguang Frank
  full_name: Chan, Yingguang Frank
  last_name: Chan
citation:
  ama: 'Castro JP, Yancoskie MN, Marchini M, et al. Data from: An integrative genomic
    analysis of the Longshanks selection experiment for longer limbs in mice. 2019.
    doi:<a href="https://doi.org/10.5061/dryad.0q2h6tk">10.5061/dryad.0q2h6tk</a>'
  apa: 'Castro, J. P., Yancoskie, M. N., Marchini, M., Belohlavy, S., Hiramatsu, L.,
    Kučka, M., … Chan, Y. F. (2019). Data from: An integrative genomic analysis of
    the Longshanks selection experiment for longer limbs in mice. Dryad. <a href="https://doi.org/10.5061/dryad.0q2h6tk">https://doi.org/10.5061/dryad.0q2h6tk</a>'
  chicago: 'Castro, João Pl, Michelle N. Yancoskie, Marta Marchini, Stefanie Belohlavy,
    Layla Hiramatsu, Marek Kučka, William H. Beluch, et al. “Data from: An Integrative
    Genomic Analysis of the Longshanks Selection Experiment for Longer Limbs in Mice.”
    Dryad, 2019. <a href="https://doi.org/10.5061/dryad.0q2h6tk">https://doi.org/10.5061/dryad.0q2h6tk</a>.'
  ieee: 'J. P. Castro <i>et al.</i>, “Data from: An integrative genomic analysis of
    the Longshanks selection experiment for longer limbs in mice.” Dryad, 2019.'
  ista: 'Castro JP, Yancoskie MN, Marchini M, Belohlavy S, Hiramatsu L, Kučka M, Beluch
    WH, Naumann R, Skuplik I, Cobb J, Barton NH, Rolian C, Chan YF. 2019. Data from:
    An integrative genomic analysis of the Longshanks selection experiment for longer
    limbs in mice, Dryad, <a href="https://doi.org/10.5061/dryad.0q2h6tk">10.5061/dryad.0q2h6tk</a>.'
  mla: 'Castro, João Pl, et al. <i>Data from: An Integrative Genomic Analysis of the
    Longshanks Selection Experiment for Longer Limbs in Mice</i>. Dryad, 2019, doi:<a
    href="https://doi.org/10.5061/dryad.0q2h6tk">10.5061/dryad.0q2h6tk</a>.'
  short: J.P. Castro, M.N. Yancoskie, M. Marchini, S. Belohlavy, L. Hiramatsu, M.
    Kučka, W.H. Beluch, R. Naumann, I. Skuplik, J. Cobb, N.H. Barton, C. Rolian, Y.F.
    Chan, (2019).
date_created: 2021-08-06T11:52:54Z
date_published: 2019-06-06T00:00:00Z
date_updated: 2023-08-29T06:41:51Z
day: '06'
department:
- _id: NiBa
doi: 10.5061/dryad.0q2h6tk
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.0q2h6tk
month: '06'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '6713'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: An integrative genomic analysis of the Longshanks selection experiment
  for longer limbs in mice'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9805'
abstract:
- lang: eng
  text: The spread of adaptive alleles is fundamental to evolution, and in theory,
    this process is well‐understood. However, only rarely can we follow this process—whether
    it originates from the spread of a new mutation, or by introgression from another
    population. In this issue of Molecular Ecology, Hanemaaijer et al. (2018) report
    on a 25‐year long study of the mosquitoes Anopheles gambiae (Figure 1) and Anopheles
    coluzzi in Mali, based on genotypes at 15 single‐nucleotide polymorphism (SNP).
    The species are usually reproductively isolated from each other, but in 2002 and
    2006, bursts of hybridization were observed, when F1 hybrids became abundant.
    Alleles backcrossed from A. gambiae into A. coluzzi, but after the first event,
    these declined over the following years. In contrast, after 2006, an insecticide
    resistance allele that had established in A. gambiae spread into A. coluzzi, and
    rose to high frequency there, over 6 years (~75 generations). Whole genome sequences
    of 74 individuals showed that A. gambiae SNP from across the genome had become
    common in the A. coluzzi population, but that most of these were clustered in
    34 genes around the resistance locus. A new set of SNP from 25 of these genes
    were assayed over time; over the 4 years since near‐fixation of the resistance
    allele; some remained common, whereas others declined. What do these patterns
    tell us about this introgression event?
article_processing_charge: No
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: 'Barton NH. Data from: The consequences of an introgression event. 2019. doi:<a
    href="https://doi.org/10.5061/dryad.2kb6fh4">10.5061/dryad.2kb6fh4</a>'
  apa: 'Barton, N. H. (2019). Data from: The consequences of an introgression event.
    Dryad. <a href="https://doi.org/10.5061/dryad.2kb6fh4">https://doi.org/10.5061/dryad.2kb6fh4</a>'
  chicago: 'Barton, Nicholas H. “Data from: The Consequences of an Introgression Event.”
    Dryad, 2019. <a href="https://doi.org/10.5061/dryad.2kb6fh4">https://doi.org/10.5061/dryad.2kb6fh4</a>.'
  ieee: 'N. H. Barton, “Data from: The consequences of an introgression event.” Dryad,
    2019.'
  ista: 'Barton NH. 2019. Data from: The consequences of an introgression event, Dryad,
    <a href="https://doi.org/10.5061/dryad.2kb6fh4">10.5061/dryad.2kb6fh4</a>.'
  mla: 'Barton, Nicholas H. <i>Data from: The Consequences of an Introgression Event</i>.
    Dryad, 2019, doi:<a href="https://doi.org/10.5061/dryad.2kb6fh4">10.5061/dryad.2kb6fh4</a>.'
  short: N.H. Barton, (2019).
date_created: 2021-08-06T12:03:50Z
date_published: 2019-01-09T00:00:00Z
date_updated: 2023-09-19T10:06:07Z
day: '09'
department:
- _id: NiBa
doi: 10.5061/dryad.2kb6fh4
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.2kb6fh4
month: '01'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '40'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: The consequences of an introgression event'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9806'
abstract:
- lang: eng
  text: 1. Hosts can alter their strategy towards pathogens during their lifetime,
    i.e., they can show phenotypic plasticity in immunity or life history. Immune
    priming is one such example, where a previous encounter with a pathogen confers
    enhanced protection upon secondary challenge, resulting in reduced pathogen load
    (i.e. resistance) and improved host survival. However, an initial encounter might
    also enhance tolerance, particularly to less virulent opportunistic pathogens
    that establish persistent infections. In this scenario, individuals are better
    able to reduce the negative fitness consequences that result from a high pathogen
    load. Finally, previous exposure may also lead to life history adjustments, such
    as terminal investment into reproduction. 2. Using different Drosophila melanogaster
    host genotypes and two bacterial pathogens, Lactococcus lactis and Pseudomonas
    entomophila, we tested if previous exposure results in resistance or tolerance
    and whether it modifies immune gene expression during an acute-phase infection
    (one day post-challenge). We then asked if previous pathogen exposure affects
    chronic-phase pathogen persistence and longer-term survival (28 days post-challenge).
    3. We predicted that previous exposure would increase host resistance to an early
    stage bacterial infection while it might come at a cost to host fecundity tolerance.
    We reasoned that resistance would be due in part to stronger immune gene expression
    after challenge. We expected that previous exposure would improve long-term survival,
    that it would reduce infection persistence, and we expected to find genetic variation
    in these responses. 4. We found that previous exposure to P. entomophila weakened
    host resistance to a second infection independent of genotype and had no effect
    on immune gene expression. Fecundity tolerance showed genotypic variation but
    was not influenced by previous exposure. However, L. lactis persisted as a chronic
    infection, whereas survivors cleared the more pathogenic P. entomophila infection.
    5. To our knowledge, this is the first study that addresses host tolerance to
    bacteria in relation to previous exposure, taking a multi-faceted approach to
    address the topic. Our results suggest that previous exposure comes with transient
    costs to resistance during the early stage of infection in this host-pathogen
    system and that infection persistence may be bacterium-specific.
article_processing_charge: No
author:
- first_name: Megan
  full_name: Kutzer, Megan
  id: 29D0B332-F248-11E8-B48F-1D18A9856A87
  last_name: Kutzer
  orcid: 0000-0002-8696-6978
- first_name: Joachim
  full_name: Kurtz, Joachim
  last_name: Kurtz
- first_name: Sophie A.O.
  full_name: Armitage, Sophie A.O.
  last_name: Armitage
citation:
  ama: 'Kutzer M, Kurtz J, Armitage SAO. Data from: A multi-faceted approach testing
    the effects of previous bacterial exposure on resistance and tolerance. 2019.
    doi:<a href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>'
  apa: 'Kutzer, M., Kurtz, J., &#38; Armitage, S. A. O. (2019). Data from: A multi-faceted
    approach testing the effects of previous bacterial exposure on resistance and
    tolerance. Dryad. <a href="https://doi.org/10.5061/dryad.9kj41f0">https://doi.org/10.5061/dryad.9kj41f0</a>'
  chicago: 'Kutzer, Megan, Joachim Kurtz, and Sophie A.O. Armitage. “Data from: A
    Multi-Faceted Approach Testing the Effects of Previous Bacterial Exposure on Resistance
    and Tolerance.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.9kj41f0">https://doi.org/10.5061/dryad.9kj41f0</a>.'
  ieee: 'M. Kutzer, J. Kurtz, and S. A. O. Armitage, “Data from: A multi-faceted approach
    testing the effects of previous bacterial exposure on resistance and tolerance.”
    Dryad, 2019.'
  ista: 'Kutzer M, Kurtz J, Armitage SAO. 2019. Data from: A multi-faceted approach
    testing the effects of previous bacterial exposure on resistance and tolerance,
    Dryad, <a href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>.'
  mla: 'Kutzer, Megan, et al. <i>Data from: A Multi-Faceted Approach Testing the Effects
    of Previous Bacterial Exposure on Resistance and Tolerance</i>. Dryad, 2019, doi:<a
    href="https://doi.org/10.5061/dryad.9kj41f0">10.5061/dryad.9kj41f0</a>.'
  short: M. Kutzer, J. Kurtz, S.A.O. Armitage, (2019).
date_created: 2021-08-06T12:06:40Z
date_published: 2019-02-05T00:00:00Z
date_updated: 2023-08-25T08:04:52Z
day: '05'
department:
- _id: SyCr
doi: 10.5061/dryad.9kj41f0
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.9kj41f0
month: '02'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '6105'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: A multi-faceted approach testing the effects of previous bacterial
  exposure on resistance and tolerance'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9839'
abstract:
- lang: eng
  text: 'More than 100 years after Grigg’s influential analysis of species’ borders,
    the causes of limits to species’ ranges still represent a puzzle that has never
    been understood with clarity. The topic has become especially important recently
    as many scientists have become interested in the potential for species’ ranges
    to shift in response to climate change—and yet nearly all of those studies fail
    to recognise or incorporate evolutionary genetics in a way that relates to theoretical
    developments. I show that range margins can be understood based on just two measurable
    parameters: (i) the fitness cost of dispersal—a measure of environmental heterogeneity—and
    (ii) the strength of genetic drift, which reduces genetic diversity. Together,
    these two parameters define an ‘expansion threshold’: adaptation fails when genetic
    drift reduces genetic diversity below that required for adaptation to a heterogeneous
    environment. When the key parameters drop below this expansion threshold locally,
    a sharp range margin forms. When they drop below this threshold throughout the
    species’ range, adaptation collapses everywhere, resulting in either extinction
    or formation of a fragmented metapopulation. Because the effects of dispersal
    differ fundamentally with dimension, the second parameter—the strength of genetic
    drift—is qualitatively different compared to a linear habitat. In two-dimensional
    habitats, genetic drift becomes effectively independent of selection. It decreases
    with ‘neighbourhood size’—the number of individuals accessible by dispersal within
    one generation. Moreover, in contrast to earlier predictions, which neglected
    evolution of genetic variance and/or stochasticity in two dimensions, dispersal
    into small marginal populations aids adaptation. This is because the reduction
    of both genetic and demographic stochasticity has a stronger effect than the cost
    of dispersal through increased maladaptation. The expansion threshold thus provides
    a novel, theoretically justified, and testable prediction for formation of the
    range margin and collapse of the species’ range.'
article_processing_charge: No
author:
- first_name: Jitka
  full_name: Polechova, Jitka
  id: 3BBFB084-F248-11E8-B48F-1D18A9856A87
  last_name: Polechova
  orcid: 0000-0003-0951-3112
citation:
  ama: 'Polechova J. Data from: Is the sky the limit? On the expansion threshold of
    a species’ range. 2019. doi:<a href="https://doi.org/10.5061/dryad.5vv37">10.5061/dryad.5vv37</a>'
  apa: 'Polechova, J. (2019). Data from: Is the sky the limit? On the expansion threshold
    of a species’ range. Dryad. <a href="https://doi.org/10.5061/dryad.5vv37">https://doi.org/10.5061/dryad.5vv37</a>'
  chicago: 'Polechova, Jitka. “Data from: Is the Sky the Limit? On the Expansion Threshold
    of a Species’ Range.” Dryad, 2019. <a href="https://doi.org/10.5061/dryad.5vv37">https://doi.org/10.5061/dryad.5vv37</a>.'
  ieee: 'J. Polechova, “Data from: Is the sky the limit? On the expansion threshold
    of a species’ range.” Dryad, 2019.'
  ista: 'Polechova J. 2019. Data from: Is the sky the limit? On the expansion threshold
    of a species’ range, Dryad, <a href="https://doi.org/10.5061/dryad.5vv37">10.5061/dryad.5vv37</a>.'
  mla: 'Polechova, Jitka. <i>Data from: Is the Sky the Limit? On the Expansion Threshold
    of a Species’ Range</i>. Dryad, 2019, doi:<a href="https://doi.org/10.5061/dryad.5vv37">10.5061/dryad.5vv37</a>.'
  short: J. Polechova, (2019).
date_created: 2021-08-09T13:07:28Z
date_published: 2019-06-22T00:00:00Z
date_updated: 2023-02-23T11:14:30Z
day: '22'
department:
- _id: NiBa
doi: 10.5061/dryad.5vv37
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5061/dryad.5vv37
month: '06'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
  record:
  - id: '315'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Is the sky the limit? On the expansion threshold of a species''
  range'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9890'
abstract:
- lang: eng
  text: Distribution of OGs with mosaic phyletic patterns across species (complete
    genomes only). (CSV 7 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 15 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808802.v1">10.6084/m9.figshare.9808802.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 15 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808802.v1">https://doi.org/10.6084/m9.figshare.9808802.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 15 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808802.v1">https://doi.org/10.6084/m9.figshare.9808802.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 15 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 15 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808802.v1">10.6084/m9.figshare.9808802.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 15 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808802.v1">10.6084/m9.figshare.9808802.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-11T14:26:40Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808802.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808802.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 15 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9892'
abstract:
- lang: eng
  text: Distribution of OGs with mosaic phyletic patterns across species (all genomes).
    (CSV 10 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V
  full_name: Chaplin, Andrei V
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 16 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808814.v1">10.6084/m9.figshare.9808814.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 16 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808814.v1">https://doi.org/10.6084/m9.figshare.9808814.v1</a>
  chicago: Sigalova, Olga M., Andrei V Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 16 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808814.v1">https://doi.org/10.6084/m9.figshare.9808814.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 16 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 16 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808814.v1">10.6084/m9.figshare.9808814.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 16 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808814.v1">10.6084/m9.figshare.9808814.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:11:53Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808814.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808814.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 16 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
