---
_id: '7611'
abstract:
- lang: eng
  text: We consider a system of N bosons in the limit N→∞, interacting through singular
    potentials. For initial data exhibiting Bose–Einstein condensation, the many-body
    time evolution is well approximated through a quadratic fluctuation dynamics around
    a cubic nonlinear Schrödinger equation of the condensate wave function. We show
    that these fluctuations satisfy a (multi-variate) central limit theorem.
acknowledgement: "Simone Rademacher acknowledges partial support from the NCCR SwissMAP.
  This project has received\r\nfunding from the European Union’s Horizon 2020 research
  and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen
  access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R.
  would like to thank Benjamin Schlein for many fruitful discussions."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Simone Anna Elvira
  full_name: Rademacher, Simone Anna Elvira
  id: 856966FE-A408-11E9-977E-802DE6697425
  last_name: Rademacher
  orcid: 0000-0001-5059-4466
citation:
  ama: Rademacher SAE. Central limit theorem for Bose gases interacting through singular
    potentials. <i>Letters in Mathematical Physics</i>. 2020;110:2143-2174. doi:<a
    href="https://doi.org/10.1007/s11005-020-01286-w">10.1007/s11005-020-01286-w</a>
  apa: Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting
    through singular potentials. <i>Letters in Mathematical Physics</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s11005-020-01286-w">https://doi.org/10.1007/s11005-020-01286-w</a>
  chicago: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
    through Singular Potentials.” <i>Letters in Mathematical Physics</i>. Springer
    Nature, 2020. <a href="https://doi.org/10.1007/s11005-020-01286-w">https://doi.org/10.1007/s11005-020-01286-w</a>.
  ieee: S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through
    singular potentials,” <i>Letters in Mathematical Physics</i>, vol. 110. Springer
    Nature, pp. 2143–2174, 2020.
  ista: Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through
    singular potentials. Letters in Mathematical Physics. 110, 2143–2174.
  mla: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
    through Singular Potentials.” <i>Letters in Mathematical Physics</i>, vol. 110,
    Springer Nature, 2020, pp. 2143–74, doi:<a href="https://doi.org/10.1007/s11005-020-01286-w">10.1007/s11005-020-01286-w</a>.
  short: S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.
date_created: 2020-03-23T11:11:47Z
date_published: 2020-03-12T00:00:00Z
date_updated: 2023-09-05T15:14:50Z
day: '12'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s11005-020-01286-w
ec_funded: 1
external_id:
  isi:
  - '000551556000006'
file:
- access_level: open_access
  checksum: 3bdd41f10ad947b67a45b98f507a7d4a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T12:04:26Z
  date_updated: 2020-11-20T12:04:26Z
  file_id: '8784'
  file_name: 2020_LettersMathPhysics_Rademacher.pdf
  file_size: 478683
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T12:04:26Z
has_accepted_license: '1'
intvolume: '       110'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 2143-2174
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - 1573-0530
  issn:
  - 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Central limit theorem for Bose gases interacting through singular potentials
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 110
year: '2020'
...
---
_id: '7618'
abstract:
- lang: eng
  text: 'This short note aims to study quantum Hellinger distances investigated recently
    by Bhatia et al. (Lett Math Phys 109:1777–1804, 2019) with a particular emphasis
    on barycenters. We introduce the family of generalized quantum Hellinger divergences
    that are of the form ϕ(A,B)=Tr((1−c)A+cB−AσB), where σ is an arbitrary Kubo–Ando
    mean, and c∈(0,1) is the weight of σ. We note that these divergences belong to
    the family of maximal quantum f-divergences, and hence are jointly convex, and
    satisfy the data processing inequality. We derive a characterization of the barycenter
    of finitely many positive definite operators for these generalized quantum Hellinger
    divergences. We note that the characterization of the barycenter as the weighted
    multivariate 1/2-power mean, that was claimed in Bhatia et al. (2019), is true
    in the case of commuting operators, but it is not correct in the general case. '
acknowledgement: "J. Pitrik was supported by the Hungarian Academy of Sciences Lendület-Momentum
  Grant for Quantum\r\nInformation Theory, No. 96 141, and by the Hungarian National
  Research, Development and Innovation\r\nOffice (NKFIH) via Grants Nos. K119442,
  K124152 and KH129601. D. Virosztek was supported by the\r\nISTFELLOW program of
  the Institute of Science and Technology Austria (Project Code IC1027FELL01),\r\nby
  the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSklodowska-Curie
  Grant Agreement No. 846294, and partially supported by the Hungarian National\r\nResearch,
  Development and Innovation Office (NKFIH) via Grants Nos. K124152 and KH129601.\r\nWe
  are grateful to Milán Mosonyi for drawing our attention to Ref.’s [6,14,15,17,\r\n20,21],
  for comments on earlier versions of this paper, and for several discussions on the
  topic. We are\r\nalso grateful to Miklós Pálfia for several discussions; to László
  Erdös for his essential suggestions on the\r\nstructure and highlights of this paper,
  and for his comments on earlier versions; and to the anonymous\r\nreferee for his/her
  valuable comments and suggestions."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jozsef
  full_name: Pitrik, Jozsef
  last_name: Pitrik
- first_name: Daniel
  full_name: Virosztek, Daniel
  id: 48DB45DA-F248-11E8-B48F-1D18A9856A87
  last_name: Virosztek
  orcid: 0000-0003-1109-5511
citation:
  ama: Pitrik J, Virosztek D. Quantum Hellinger distances revisited. <i>Letters in
    Mathematical Physics</i>. 2020;110(8):2039-2052. doi:<a href="https://doi.org/10.1007/s11005-020-01282-0">10.1007/s11005-020-01282-0</a>
  apa: Pitrik, J., &#38; Virosztek, D. (2020). Quantum Hellinger distances revisited.
    <i>Letters in Mathematical Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/s11005-020-01282-0">https://doi.org/10.1007/s11005-020-01282-0</a>
  chicago: Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.”
    <i>Letters in Mathematical Physics</i>. Springer Nature, 2020. <a href="https://doi.org/10.1007/s11005-020-01282-0">https://doi.org/10.1007/s11005-020-01282-0</a>.
  ieee: J. Pitrik and D. Virosztek, “Quantum Hellinger distances revisited,” <i>Letters
    in Mathematical Physics</i>, vol. 110, no. 8. Springer Nature, pp. 2039–2052,
    2020.
  ista: Pitrik J, Virosztek D. 2020. Quantum Hellinger distances revisited. Letters
    in Mathematical Physics. 110(8), 2039–2052.
  mla: Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.”
    <i>Letters in Mathematical Physics</i>, vol. 110, no. 8, Springer Nature, 2020,
    pp. 2039–52, doi:<a href="https://doi.org/10.1007/s11005-020-01282-0">10.1007/s11005-020-01282-0</a>.
  short: J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.
date_created: 2020-03-25T15:57:48Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2023-08-18T10:17:26Z
day: '01'
department:
- _id: LaEr
doi: 10.1007/s11005-020-01282-0
ec_funded: 1
external_id:
  arxiv:
  - '1903.10455'
  isi:
  - '000551556000002'
intvolume: '       110'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1903.10455
month: '08'
oa: 1
oa_version: Preprint
page: 2039-2052
project:
- _id: 26A455A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '846294'
  name: Geometric study of Wasserstein spaces and free probability
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - 1573-0530
  issn:
  - 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum Hellinger distances revisited
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 110
year: '2020'
...
---
_id: '7619'
abstract:
- lang: eng
  text: Cell polarity is a fundamental feature of all multicellular organisms. In
    plants, prominent cell polarity markers are PIN auxin transporters crucial for
    plant development. To identify novel components involved in cell polarity establishment
    and maintenance, we carried out a forward genetic screening with PIN2:PIN1-HA;pin2
    Arabidopsis plants, which ectopically express predominantly basally localized
    PIN1 in the root epidermal cells leading to agravitropic root growth. From the
    screen, we identified the regulator of PIN polarity 12 (repp12) mutation, which
    restored gravitropic root growth and caused PIN1-HA polarity switch from basal
    to apical side of root epidermal cells. Complementation experiments established
    the repp12 causative mutation as an amino acid substitution in Aminophospholipid
    ATPase3 (ALA3), a phospholipid flippase with predicted function in vesicle formation.
    ala3 T-DNA mutants show defects in many auxin-regulated processes, in asymmetric
    auxin distribution and in PIN trafficking. Analysis of quintuple and sextuple
    mutants confirmed a crucial role of ALA proteins in regulating plant development
    and in PIN trafficking and polarity. Genetic and physical interaction studies
    revealed that ALA3 functions together with GNOM and BIG3 ARF GEFs. Taken together,
    our results identified ALA3 flippase as an important interactor and regulator
    of ARF GEF functioning in PIN polarity, trafficking and auxin-mediated development.
acknowledged_ssus:
- _id: Bio
article_processing_charge: No
article_type: original
author:
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Petra
  full_name: Marhavá, Petra
  id: 44E59624-F248-11E8-B48F-1D18A9856A87
  last_name: Marhavá
- first_name: Shutang
  full_name: Tan, Shutang
  id: 2DE75584-F248-11E8-B48F-1D18A9856A87
  last_name: Tan
  orcid: 0000-0002-0471-8285
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Vendula
  full_name: Pukyšová, Vendula
  last_name: Pukyšová
- first_name: Adrià Sans
  full_name: Sánchez, Adrià Sans
  last_name: Sánchez
- first_name: Vivek Kumar
  full_name: Raxwal, Vivek Kumar
  last_name: Raxwal
- first_name: Christian S.
  full_name: Hardtke, Christian S.
  last_name: Hardtke
- first_name: Tomasz
  full_name: Nodzynski, Tomasz
  last_name: Nodzynski
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with
    ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin
    transporters. <i>The Plant Cell</i>. 2020;32(5):1644-1664. doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>
  apa: Zhang, X., Adamowski, M., Marhavá, P., Tan, S., Zhang, Y., Rodriguez Solovey,
    L., … Friml, J. (2020). Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters. <i>The
    Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>
  chicago: Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang,
    Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate
    with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN
    Auxin Transporters.” <i>The Plant Cell</i>. American Society of Plant Biologists,
    2020. <a href="https://doi.org/10.1105/tpc.19.00869">https://doi.org/10.1105/tpc.19.00869</a>.
  ieee: X. Zhang <i>et al.</i>, “Arabidopsis flippases cooperate with ARF GTPase exchange
    factors to regulate the trafficking and polarity of PIN auxin transporters,” <i>The
    Plant Cell</i>, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664,
    2020.
  ista: Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka
    M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020.
    Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the
    trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.
  mla: Zhang, Xixi, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange
    Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” <i>The
    Plant Cell</i>, vol. 32, no. 5, American Society of Plant Biologists, 2020, pp.
    1644–64, doi:<a href="https://doi.org/10.1105/tpc.19.00869">10.1105/tpc.19.00869</a>.
  short: X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey,
    M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski,
    J. Friml, The Plant Cell 32 (2020) 1644–1664.
date_created: 2020-03-28T07:39:22Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-05T12:21:06Z
day: '01'
department:
- _id: JiFr
doi: 10.1105/tpc.19.00869
ec_funded: 1
external_id:
  isi:
  - '000545741500030'
  pmid:
  - '32193204'
intvolume: '        32'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1105/tpc.19.00869
month: '05'
oa: 1
oa_version: Published Version
page: 1644-1664
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: The Plant Cell
publication_identifier:
  eissn:
  - 1532-298X
  issn:
  - 1040-4651
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate
  the trafficking and polarity of PIN auxin transporters
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 32
year: '2020'
...
---
_id: '7622'
abstract:
- lang: eng
  text: The International Young Physicists' Tournament (IYPT) continued in 2018 in
    Beijing, China and 2019 in Warsaw, Poland with its 31st and 32nd editions. The
    IYPT is a modern scientific competition for teams of high school students, also
    known as the Physics World Cup. It involves long-term theoretical and experimental
    work focused on solving 17 publicly announced open-ended problems in teams of
    five. On top of that, teams have to present their solutions in front of other
    teams and a scientific jury, and get opposed and reviewed by their peers. Here
    we present a brief information about the competition with a specific focus on
    one of the IYPT 2018 tasks, the 'Ring Oiler'. This seemingly simple mechanical
    problem appeared to be of such a complexity that even the dozens of participating
    teams and jurying scientists were not able to solve all of its subtleties.
article_number: '034001'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Martin
  full_name: Plesch, Martin
  last_name: Plesch
- first_name: Samuel
  full_name: Plesník, Samuel
  last_name: Plesník
- first_name: Natalia
  full_name: Ruzickova, Natalia
  id: D2761128-D73D-11E9-A1BF-BA0DE6697425
  last_name: Ruzickova
citation:
  ama: Plesch M, Plesník S, Ruzickova N. The IYPT and the “Ring Oiler” problem. <i>European
    Journal of Physics</i>. 2020;41(3). doi:<a href="https://doi.org/10.1088/1361-6404/ab6414">10.1088/1361-6404/ab6414</a>
  apa: Plesch, M., Plesník, S., &#38; Ruzickova, N. (2020). The IYPT and the “Ring
    Oiler” problem. <i>European Journal of Physics</i>. IOP Publishing. <a href="https://doi.org/10.1088/1361-6404/ab6414">https://doi.org/10.1088/1361-6404/ab6414</a>
  chicago: Plesch, Martin, Samuel Plesník, and Natalia Ruzickova. “The IYPT and the
    ‘Ring Oiler’ Problem.” <i>European Journal of Physics</i>. IOP Publishing, 2020.
    <a href="https://doi.org/10.1088/1361-6404/ab6414">https://doi.org/10.1088/1361-6404/ab6414</a>.
  ieee: M. Plesch, S. Plesník, and N. Ruzickova, “The IYPT and the ‘Ring Oiler’ problem,”
    <i>European Journal of Physics</i>, vol. 41, no. 3. IOP Publishing, 2020.
  ista: Plesch M, Plesník S, Ruzickova N. 2020. The IYPT and the ‘Ring Oiler’ problem.
    European Journal of Physics. 41(3), 034001.
  mla: Plesch, Martin, et al. “The IYPT and the ‘Ring Oiler’ Problem.” <i>European
    Journal of Physics</i>, vol. 41, no. 3, 034001, IOP Publishing, 2020, doi:<a href="https://doi.org/10.1088/1361-6404/ab6414">10.1088/1361-6404/ab6414</a>.
  short: M. Plesch, S. Plesník, N. Ruzickova, European Journal of Physics 41 (2020).
date_created: 2020-03-31T11:25:04Z
date_published: 2020-02-24T00:00:00Z
date_updated: 2023-08-18T10:18:29Z
day: '24'
ddc:
- '530'
department:
- _id: FyKo
doi: 10.1088/1361-6404/ab6414
external_id:
  arxiv:
  - '1910.03290'
  isi:
  - '000537425400001'
file:
- access_level: open_access
  checksum: 47dda164e33b6c0c6c3ed14aad298376
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T08:53:53Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7641'
  file_name: 2020_EuropJourPhysics_Plesch.pdf
  file_size: 1533672
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        41'
isi: 1
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: European Journal of Physics
publication_identifier:
  eissn:
  - '13616404'
  issn:
  - '01430807'
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: The IYPT and the 'Ring Oiler' problem
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2020'
...
---
_id: '7623'
abstract:
- lang: eng
  text: A two-dimensional mathematical model for cells migrating without adhesion
    capabilities is presented and analyzed. Cells are represented by their cortex,
    which is modeled as an elastic curve, subject to an internal pressure force. Net
    polymerization or depolymerization in the cortex is modeled via local addition
    or removal of material, driving a cortical flow. The model takes the form of a
    fully nonlinear degenerate parabolic system. An existence analysis is carried
    out by adapting ideas from the theory of gradient flows. Numerical simulations
    show that these simple rules can account for the behavior observed in experiments,
    suggesting a possible mechanical mechanism for adhesion-independent motility.
acknowledgement: This work has been supported by the Vienna Science and Technology
  Fund, Grant no. LS13-029. G.J. and C.S. also acknowledge support by the Austrian
  Science Fund, Grants no. W1245, F 65, and W1261, as well as by the Fondation Sciences
  Mathématiques de Paris, and by Paris-Sciences-et-Lettres.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Gaspard
  full_name: Jankowiak, Gaspard
  last_name: Jankowiak
- first_name: Diane
  full_name: Peurichard, Diane
  last_name: Peurichard
- first_name: Anne
  full_name: Reversat, Anne
  id: 35B76592-F248-11E8-B48F-1D18A9856A87
  last_name: Reversat
  orcid: 0000-0003-0666-8928
- first_name: Christian
  full_name: Schmeiser, Christian
  last_name: Schmeiser
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. Modeling adhesion-independent
    cell migration. <i>Mathematical Models and Methods in Applied Sciences</i>. 2020;30(3):513-537.
    doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>
  apa: Jankowiak, G., Peurichard, D., Reversat, A., Schmeiser, C., &#38; Sixt, M.
    K. (2020). Modeling adhesion-independent cell migration. <i>Mathematical Models
    and Methods in Applied Sciences</i>. World Scientific. <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>
  chicago: Jankowiak, Gaspard, Diane Peurichard, Anne Reversat, Christian Schmeiser,
    and Michael K Sixt. “Modeling Adhesion-Independent Cell Migration.” <i>Mathematical
    Models and Methods in Applied Sciences</i>. World Scientific, 2020. <a href="https://doi.org/10.1142/S021820252050013X">https://doi.org/10.1142/S021820252050013X</a>.
  ieee: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, and M. K. Sixt, “Modeling
    adhesion-independent cell migration,” <i>Mathematical Models and Methods in Applied
    Sciences</i>, vol. 30, no. 3. World Scientific, pp. 513–537, 2020.
  ista: Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. 2020. Modeling
    adhesion-independent cell migration. Mathematical Models and Methods in Applied
    Sciences. 30(3), 513–537.
  mla: Jankowiak, Gaspard, et al. “Modeling Adhesion-Independent Cell Migration.”
    <i>Mathematical Models and Methods in Applied Sciences</i>, vol. 30, no. 3, World
    Scientific, 2020, pp. 513–37, doi:<a href="https://doi.org/10.1142/S021820252050013X">10.1142/S021820252050013X</a>.
  short: G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, M.K. Sixt, Mathematical
    Models and Methods in Applied Sciences 30 (2020) 513–537.
date_created: 2020-03-31T11:25:05Z
date_published: 2020-03-18T00:00:00Z
date_updated: 2023-08-18T10:18:56Z
day: '18'
department:
- _id: MiSi
doi: 10.1142/S021820252050013X
external_id:
  arxiv:
  - '1903.09426'
  isi:
  - '000525349900003'
intvolume: '        30'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1903.09426
month: '03'
oa: 1
oa_version: Preprint
page: 513-537
project:
- _id: 25AD6156-B435-11E9-9278-68D0E5697425
  grant_number: LS13-029
  name: Modeling of Polarization and Motility of Leukocytes in Three-Dimensional Environments
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
  issn:
  - '02182025'
publication_status: published
publisher: World Scientific
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modeling adhesion-independent cell migration
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 30
year: '2020'
...
---
_id: '7629'
abstract:
- lang: eng
  text: "This thesis is based on three main topics: In the first part, we study convergence
    of discrete gradient flow structures associated with regular finite-volume discretisations
    of Fokker-Planck equations. We show evolutionary I convergence of the discrete
    gradient flows to the L2-Wasserstein gradient flow corresponding to the solution
    of a Fokker-Planck\r\nequation in arbitrary dimension d >= 1. Along the argument,
    we prove Mosco- and I-convergence results for discrete energy functionals, which
    are of independent interest for convergence of equivalent gradient flow structures
    in Hilbert spaces.\r\nThe second part investigates L2-Wasserstein flows on metric
    graph. The starting point is a Benamou-Brenier formula for the L2-Wasserstein
    distance, which is proved via a regularisation scheme for solutions of the continuity
    equation, adapted to the peculiar geometric structure of metric graphs. Based
    on those results, we show that the L2-Wasserstein space over a metric graph admits
    a gradient flow which may be identified as a solution of a Fokker-Planck equation.\r\nIn
    the third part, we focus again on the discrete gradient flows, already encountered
    in the first part. We propose a variational structure which extends the gradient
    flow structure to Markov chains violating the detailed-balance conditions. Using
    this structure, we characterise contraction estimates for the discrete heat flow
    in terms of convexity of\r\ncorresponding path-dependent energy functionals. In
    addition, we use this approach to derive several functional inequalities for said
    functionals."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Dominik L
  full_name: Forkert, Dominik L
  id: 35C79D68-F248-11E8-B48F-1D18A9856A87
  last_name: Forkert
citation:
  ama: Forkert DL. Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains. 2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:7629">10.15479/AT:ISTA:7629</a>
  apa: Forkert, D. L. (2020). <i>Gradient flows in spaces of probability measures
    for finite-volume schemes, metric graphs and non-reversible Markov chains</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:7629">https://doi.org/10.15479/AT:ISTA:7629</a>
  chicago: Forkert, Dominik L. “Gradient Flows in Spaces of Probability Measures for
    Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains.” Institute
    of Science and Technology Austria, 2020. <a href="https://doi.org/10.15479/AT:ISTA:7629">https://doi.org/10.15479/AT:ISTA:7629</a>.
  ieee: D. L. Forkert, “Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains,” Institute of Science
    and Technology Austria, 2020.
  ista: Forkert DL. 2020. Gradient flows in spaces of probability measures for finite-volume
    schemes, metric graphs and non-reversible Markov chains. Institute of Science
    and Technology Austria.
  mla: Forkert, Dominik L. <i>Gradient Flows in Spaces of Probability Measures for
    Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains</i>. Institute
    of Science and Technology Austria, 2020, doi:<a href="https://doi.org/10.15479/AT:ISTA:7629">10.15479/AT:ISTA:7629</a>.
  short: D.L. Forkert, Gradient Flows in Spaces of Probability Measures for Finite-Volume
    Schemes, Metric Graphs and Non-Reversible Markov Chains, Institute of Science
    and Technology Austria, 2020.
date_created: 2020-04-02T06:40:23Z
date_published: 2020-03-31T00:00:00Z
date_updated: 2023-09-07T13:03:12Z
day: '31'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: JaMa
doi: 10.15479/AT:ISTA:7629
ec_funded: 1
file:
- access_level: open_access
  checksum: c814a1a6195269ca6fe48b0dca45ae8a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T10:47:59Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7657'
  file_name: Thesis_Forkert_PDFA.pdf
  file_size: 3297129
  relation: main_file
- access_level: closed
  checksum: ceafb53f923d1b5bdf14b2b0f22e4a81
  content_type: application/x-zip-compressed
  creator: dernst
  date_created: 2020-04-14T10:47:59Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7658'
  file_name: Thesis_Forkert_source.zip
  file_size: 1063908
  relation: source_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '154'
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
title: Gradient flows in spaces of probability measures for finite-volume schemes,
  metric graphs and non-reversible Markov chains
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7632'
abstract:
- lang: eng
  text: The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical
    network supporting goal-directed behaviour, with functions including sensorimotor
    transformations and decision making. In primates, this network links performed
    and observed actions via mirror neurons, which fire both when individuals perform
    an action and when they observe the same action performed by a conspecific. Mirror
    neurons are believed to be important for social learning, but it is not known
    whether mirror-like neurons occur in similar networks in other social species,
    such as rodents, or if they can be measured in such models using paradigms where
    observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in
    PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching
    and wheel-running tasks, and found that cell populations in both areas robustly
    encoded several naturalistic behaviours. However, neural responses to the same
    set of observed actions were absent, although we verified that observer mice were
    attentive to performers and that PPC neurons responded reliably to visual cues.
    Statistical modelling also indicated that executed actions outperformed observed
    actions in predicting neural responses. These results raise the possibility that
    sensorimotor action recognition in rodents could take place outside of the parieto-frontal
    circuit, and underscore that detecting socially-driven neural coding depends critically
    on the species and behavioural paradigm used.
article_number: '5559'
article_processing_charge: No
article_type: original
author:
- first_name: Tuce
  full_name: Tombaz, Tuce
  last_name: Tombaz
- first_name: Benjamin A.
  full_name: Dunn, Benjamin A.
  last_name: Dunn
- first_name: Karoline
  full_name: Hovde, Karoline
  last_name: Hovde
- first_name: Ryan J
  full_name: Cubero, Ryan J
  id: 850B2E12-9CD4-11E9-837F-E719E6697425
  last_name: Cubero
  orcid: 0000-0003-0002-1867
- first_name: Bartul
  full_name: Mimica, Bartul
  last_name: Mimica
- first_name: Pranav
  full_name: Mamidanna, Pranav
  last_name: Mamidanna
- first_name: Yasser
  full_name: Roudi, Yasser
  last_name: Roudi
- first_name: Jonathan R.
  full_name: Whitlock, Jonathan R.
  last_name: Whitlock
citation:
  ama: Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal
    network. <i>Scientific reports</i>. 2020;10(1). doi:<a href="https://doi.org/10.1038/s41598-020-62089-6">10.1038/s41598-020-62089-6</a>
  apa: Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P.,
    … Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network.
    <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-020-62089-6">https://doi.org/10.1038/s41598-020-62089-6</a>
  chicago: Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica,
    Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation
    in the Mouse Parieto-Frontal Network.” <i>Scientific Reports</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1038/s41598-020-62089-6">https://doi.org/10.1038/s41598-020-62089-6</a>.
  ieee: T. Tombaz <i>et al.</i>, “Action representation in the mouse parieto-frontal
    network,” <i>Scientific reports</i>, vol. 10, no. 1. Springer Nature, 2020.
  ista: Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock
    JR. 2020. Action representation in the mouse parieto-frontal network. Scientific
    reports. 10(1), 5559.
  mla: Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.”
    <i>Scientific Reports</i>, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:<a
    href="https://doi.org/10.1038/s41598-020-62089-6">10.1038/s41598-020-62089-6</a>.
  short: T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y.
    Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
date_created: 2020-04-05T22:00:47Z
date_published: 2020-03-27T00:00:00Z
date_updated: 2023-08-18T10:25:13Z
day: '27'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1038/s41598-020-62089-6
external_id:
  isi:
  - '000560406800007'
file:
- access_level: open_access
  checksum: e6cfaaaf7986532132934400038b824a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T10:44:23Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7644'
  file_name: 2020_ScientificReports_Tombaz.pdf
  file_size: 2621249
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Scientific reports
publication_identifier:
  eissn:
  - '20452322'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Action representation in the mouse parieto-frontal network
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2020'
...
---
_id: '7634'
abstract:
- lang: eng
  text: Assemblies of colloidal semiconductor nanocrystals (NCs) in the form of thin
    solid films leverage the size-dependent quantum confinement properties and the
    wet chemical methods vital for the development of the emerging solution-processable
    electronics, photonics, and optoelectronics technologies. The ability to control
    the charge carrier transport in the colloidal NC assemblies is fundamental for
    altering their electronic and optical properties for the desired applications.
    Here we demonstrate a strategy to render the solids of narrow-bandgap NC assemblies
    exclusively electron-transporting by creating a type-II heterojunction via shelling.
    Electronic transport of molecularly cross-linked PbTe@PbS core@shell NC assemblies
    is measured using both a conventional solid gate transistor and an electric-double-layer
    transistor, as well as compared with those of core-only PbTe NCs. In contrast
    to the ambipolar characteristics demonstrated by many narrow-bandgap NCs, the
    core@shell NCs exhibit exclusive n-type transport, i.e., drastically suppressed
    contribution of holes to the overall transport. The PbS shell that forms a type-II
    heterojunction assists the selective carrier transport by heavy doping of electrons
    into the PbTe-core conduction level and simultaneously strongly localizes the
    holes within the NC core valence level. This strongly enhanced n-type transport
    makes these core@shell NCs suitable for applications where ambipolar characteristics
    should be actively suppressed, in particular, for thermoelectric and electron-transporting
    layers in photovoltaic devices.
acknowledgement: This work is partly supported by Grants-in-Aid for Scientific Research
  by Young Scientist A (KAKENHI Wakate-A) No. JP17H04802, Grants-in-Aid for Scientific
  Research No. JP19H05602 from the Japan Society for the Promotion of Science, and
  RIKEN Incentive Research Grant (Shoreikadai) 2016. M.V.K. and M.I. acknowledge financial
  support from the European Union (EU) via FP7 ERC Starting Grant 2012 (Project NANOSOLID,
  GA No. 306733) and ETH Zurich via ETH career seed grant (SEED-18 16-2). Support
  from Cambridge Display Technology, Ltd., and Sumitomo Chemical Company is also acknowledged.
  We thank Mrs. T. Kikitsu and Dr. D. Hashizume (RIKEN-CEMS) for access to the transmission
  electron microscope facility.
article_processing_charge: No
article_type: original
author:
- first_name: Retno
  full_name: Miranti, Retno
  last_name: Miranti
- first_name: Daiki
  full_name: Shin, Daiki
  last_name: Shin
- first_name: Ricky Dwi
  full_name: Septianto, Ricky Dwi
  last_name: Septianto
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Maksym V.
  full_name: Kovalenko, Maksym V.
  last_name: Kovalenko
- first_name: Nobuhiro
  full_name: Matsushita, Nobuhiro
  last_name: Matsushita
- first_name: Yoshihiro
  full_name: Iwasa, Yoshihiro
  last_name: Iwasa
- first_name: Satria Zulkarnaen
  full_name: Bisri, Satria Zulkarnaen
  last_name: Bisri
citation:
  ama: Miranti R, Shin D, Septianto RD, et al. Exclusive electron transport in Core@Shell
    PbTe@PbS colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. 2020;14(3):3242-3250.
    doi:<a href="https://doi.org/10.1021/acsnano.9b08687">10.1021/acsnano.9b08687</a>
  apa: Miranti, R., Shin, D., Septianto, R. D., Ibáñez, M., Kovalenko, M. V., Matsushita,
    N., … Bisri, S. Z. (2020). Exclusive electron transport in Core@Shell PbTe@PbS
    colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/acsnano.9b08687">https://doi.org/10.1021/acsnano.9b08687</a>
  chicago: Miranti, Retno, Daiki Shin, Ricky Dwi Septianto, Maria Ibáñez, Maksym V.
    Kovalenko, Nobuhiro Matsushita, Yoshihiro Iwasa, and Satria Zulkarnaen Bisri.
    “Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal
    Assemblies.” <i>ACS Nano</i>. American Chemical Society, 2020. <a href="https://doi.org/10.1021/acsnano.9b08687">https://doi.org/10.1021/acsnano.9b08687</a>.
  ieee: R. Miranti <i>et al.</i>, “Exclusive electron transport in Core@Shell PbTe@PbS
    colloidal semiconductor nanocrystal assemblies,” <i>ACS Nano</i>, vol. 14, no.
    3. American Chemical Society, pp. 3242–3250, 2020.
  ista: Miranti R, Shin D, Septianto RD, Ibáñez M, Kovalenko MV, Matsushita N, Iwasa
    Y, Bisri SZ. 2020. Exclusive electron transport in Core@Shell PbTe@PbS colloidal
    semiconductor nanocrystal assemblies. ACS Nano. 14(3), 3242–3250.
  mla: Miranti, Retno, et al. “Exclusive Electron Transport in Core@Shell PbTe@PbS
    Colloidal Semiconductor Nanocrystal Assemblies.” <i>ACS Nano</i>, vol. 14, no.
    3, American Chemical Society, 2020, pp. 3242–50, doi:<a href="https://doi.org/10.1021/acsnano.9b08687">10.1021/acsnano.9b08687</a>.
  short: R. Miranti, D. Shin, R.D. Septianto, M. Ibáñez, M.V. Kovalenko, N. Matsushita,
    Y. Iwasa, S.Z. Bisri, ACS Nano 14 (2020) 3242–3250.
date_created: 2020-04-05T22:00:48Z
date_published: 2020-03-24T00:00:00Z
date_updated: 2023-08-18T10:25:40Z
day: '24'
department:
- _id: MaIb
doi: 10.1021/acsnano.9b08687
external_id:
  isi:
  - '000526301400057'
  pmid:
  - '32073817'
intvolume: '        14'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 3242-3250
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor
  nanocrystal assemblies
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2020'
...
---
_id: '7635'
abstract:
- lang: eng
  text: Concurrent programming can be notoriously complex and error-prone. Programming
    bugs can arise from a variety of sources, such as operation re-reordering, or
    incomplete understanding of the memory model. A variety of formal and model checking
    methods have been developed to address this fundamental difficulty. While technically
    interesting, existing academic methods are still hard to apply to the large codebases
    typical of industrial deployments, which limits their practical impact.
article_processing_charge: No
author:
- first_name: Nikita
  full_name: Koval, Nikita
  id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
  last_name: Koval
- first_name: Mariia
  full_name: Sokolova, Mariia
  id: 26217AE4-77FF-11EA-8101-AD24D49E41F4
  last_name: Sokolova
- first_name: Alexander
  full_name: Fedorov, Alexander
  last_name: Fedorov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Dmitry
  full_name: Tsitelov, Dmitry
  last_name: Tsitelov
citation:
  ama: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency
    on the JVM with Lincheck. In: <i>Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming, PPOPP</i>. Association for Computing Machinery;
    2020:423-424. doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>'
  apa: 'Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., &#38; Tsitelov, D.
    (2020). Testing concurrency on the JVM with Lincheck. In <i>Proceedings of the
    ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP</i>
    (pp. 423–424). San Diego, CA, United States: Association for Computing Machinery.
    <a href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>'
  chicago: Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh,
    and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
    PPOPP</i>, 423–24. Association for Computing Machinery, 2020. <a href="https://doi.org/10.1145/3332466.3374503">https://doi.org/10.1145/3332466.3374503</a>.
  ieee: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing
    concurrency on the JVM with Lincheck,” in <i>Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming, PPOPP</i>, San Diego, CA,
    United States, 2020, pp. 423–424.
  ista: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency
    on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles
    and Practice of Parallel Programming, PPOPP. PPOPP: Principles and Practice of
    Parallel Programming, 423–424.'
  mla: Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
    PPOPP</i>, Association for Computing Machinery, 2020, pp. 423–24, doi:<a href="https://doi.org/10.1145/3332466.3374503">10.1145/3332466.3374503</a>.
  short: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
    PPOPP, Association for Computing Machinery, 2020, pp. 423–424.
conference:
  end_date: 2020-02-26
  location: San Diego, CA, United States
  name: 'PPOPP: Principles and Practice of Parallel Programming'
  start_date: 2020-02-22
date_created: 2020-04-05T22:00:48Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2024-02-28T12:53:46Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374503
language:
- iso: eng
month: '02'
oa_version: None
page: 423-424
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
  Parallel Programming, PPOPP
publication_identifier:
  isbn:
  - '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing concurrency on the JVM with Lincheck
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7636'
abstract:
- lang: eng
  text: "Balanced search trees typically use key comparisons to guide their operations,
    and achieve logarithmic running time. By relying on numerical properties of the
    keys, interpolation search achieves lower search complexity and better performance.
    Although interpolation-based data structures were investigated in the past, their
    non-blocking concurrent variants have received very little attention so far.\r\nIn
    this paper, we propose the first non-blocking implementation of the classic interpolation
    search tree (IST) data structure. For arbitrary key distributions, the data structure
    ensures worst-case O(log n + p) amortized time for search, insertion and deletion
    traversals. When the input key distributions are smooth, lookups run in expected
    O(log log n + p) time, and insertion and deletion run in expected amortized O(log
    log n + p) time, where p is a bound on the number of threads. To improve the scalability
    of concurrent insertion and deletion, we propose a novel parallel rebuilding technique,
    which should be of independent interest.\r\nWe evaluate whether the theoretical
    improvements translate to practice by implementing the concurrent interpolation
    search tree, and benchmarking it on uniform and nonuniform key distributions,
    for dataset sizes in the millions to billions of keys. Relative to the state-of-the-art
    concurrent data structures, the concurrent interpolation search tree achieves
    performance improvements of up to 15% under high update rates, and of up to 50%
    under moderate update rates. Further, ISTs exhibit up to 2X less cache-misses,
    and consume 1.2 -- 2.6X less memory compared to the next best alternative on typical
    dataset sizes. We find that the results are surprisingly robust to distributional
    skew, which suggests that our data structure can be a promising alternative to
    classic concurrent search structures."
acknowledgement: "This project has received funding from the European Research Council
  (ERC) under the European Union Horizon 2020 research and innovation program, grant
  agreement No 805223, ERC Starting Grant ScaleML. We acknowledge the support of the
  Natural Sciences and\r\nEngineering Research Council of Canada (NSERC). "
article_processing_charge: No
author:
- first_name: Trevor A
  full_name: Brown, Trevor A
  id: 3569F0A0-F248-11E8-B48F-1D18A9856A87
  last_name: Brown
- first_name: Aleksandar
  full_name: Prokopec, Aleksandar
  last_name: Prokopec
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Brown TA, Prokopec A, Alistarh D-A. Non-blocking interpolation search trees
    with doubly-logarithmic running time. In: <i>Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming</i>. Association for Computing
    Machinery; 2020:276-291. doi:<a href="https://doi.org/10.1145/3332466.3374542">10.1145/3332466.3374542</a>'
  apa: 'Brown, T. A., Prokopec, A., &#38; Alistarh, D.-A. (2020). Non-blocking interpolation
    search trees with doubly-logarithmic running time. In <i>Proceedings of the ACM
    SIGPLAN Symposium on Principles and Practice of Parallel Programming</i> (pp.
    276–291). San Diego, CA, United States: Association for Computing Machinery. <a
    href="https://doi.org/10.1145/3332466.3374542">https://doi.org/10.1145/3332466.3374542</a>'
  chicago: Brown, Trevor A, Aleksandar Prokopec, and Dan-Adrian Alistarh. “Non-Blocking
    Interpolation Search Trees with Doubly-Logarithmic Running Time.” In <i>Proceedings
    of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>,
    276–91. Association for Computing Machinery, 2020. <a href="https://doi.org/10.1145/3332466.3374542">https://doi.org/10.1145/3332466.3374542</a>.
  ieee: T. A. Brown, A. Prokopec, and D.-A. Alistarh, “Non-blocking interpolation
    search trees with doubly-logarithmic running time,” in <i>Proceedings of the ACM
    SIGPLAN Symposium on Principles and Practice of Parallel Programming</i>, San
    Diego, CA, United States, 2020, pp. 276–291.
  ista: 'Brown TA, Prokopec A, Alistarh D-A. 2020. Non-blocking interpolation search
    trees with doubly-logarithmic running time. Proceedings of the ACM SIGPLAN Symposium
    on Principles and Practice of Parallel Programming. PPOPP: Principles and Practice
    of Parallel Programming, 276–291.'
  mla: Brown, Trevor A., et al. “Non-Blocking Interpolation Search Trees with Doubly-Logarithmic
    Running Time.” <i>Proceedings of the ACM SIGPLAN Symposium on Principles and Practice
    of Parallel Programming</i>, Association for Computing Machinery, 2020, pp. 276–91,
    doi:<a href="https://doi.org/10.1145/3332466.3374542">10.1145/3332466.3374542</a>.
  short: T.A. Brown, A. Prokopec, D.-A. Alistarh, in:, Proceedings of the ACM SIGPLAN
    Symposium on Principles and Practice of Parallel Programming, Association for
    Computing Machinery, 2020, pp. 276–291.
conference:
  end_date: 2020-02-26
  location: San Diego, CA, United States
  name: 'PPOPP: Principles and Practice of Parallel Programming'
  start_date: 2020-02-22
date_created: 2020-04-05T22:00:49Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2024-02-28T12:55:14Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374542
ec_funded: 1
external_id:
  isi:
  - '000564476500020'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3332466.3374542
month: '02'
oa: 1
oa_version: Published Version
page: 276-291
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
  Parallel Programming
publication_identifier:
  isbn:
  - '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-blocking interpolation search trees with doubly-logarithmic running time
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7637'
abstract:
- lang: eng
  text: The evolution of finitely many particles obeying Langevin dynamics is described
    by Dean–Kawasaki equations, a class of stochastic equations featuring a non-Lipschitz
    multiplicative noise in divergence form. We derive a regularised Dean–Kawasaki
    model based on second order Langevin dynamics by analysing a system of particles
    interacting via a pairwise potential. Key tools of our analysis are the propagation
    of chaos and Simon's compactness criterion. The model we obtain is a small-noise
    stochastic perturbation of the undamped McKean–Vlasov equation. We also provide
    a high-probability result for existence and uniqueness for our model.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Federico
  full_name: Cornalba, Federico
  id: 2CEB641C-A400-11E9-A717-D712E6697425
  last_name: Cornalba
  orcid: 0000-0002-6269-5149
- first_name: Tony
  full_name: Shardlow, Tony
  last_name: Shardlow
- first_name: Johannes
  full_name: Zimmer, Johannes
  last_name: Zimmer
citation:
  ama: Cornalba F, Shardlow T, Zimmer J. From weakly interacting particles to a regularised
    Dean-Kawasaki model. <i>Nonlinearity</i>. 2020;33(2):864-891. doi:<a href="https://doi.org/10.1088/1361-6544/ab5174">10.1088/1361-6544/ab5174</a>
  apa: Cornalba, F., Shardlow, T., &#38; Zimmer, J. (2020). From weakly interacting
    particles to a regularised Dean-Kawasaki model. <i>Nonlinearity</i>. IOP Publishing.
    <a href="https://doi.org/10.1088/1361-6544/ab5174">https://doi.org/10.1088/1361-6544/ab5174</a>
  chicago: Cornalba, Federico, Tony Shardlow, and Johannes Zimmer. “From Weakly Interacting
    Particles to a Regularised Dean-Kawasaki Model.” <i>Nonlinearity</i>. IOP Publishing,
    2020. <a href="https://doi.org/10.1088/1361-6544/ab5174">https://doi.org/10.1088/1361-6544/ab5174</a>.
  ieee: F. Cornalba, T. Shardlow, and J. Zimmer, “From weakly interacting particles
    to a regularised Dean-Kawasaki model,” <i>Nonlinearity</i>, vol. 33, no. 2. IOP
    Publishing, pp. 864–891, 2020.
  ista: Cornalba F, Shardlow T, Zimmer J. 2020. From weakly interacting particles
    to a regularised Dean-Kawasaki model. Nonlinearity. 33(2), 864–891.
  mla: Cornalba, Federico, et al. “From Weakly Interacting Particles to a Regularised
    Dean-Kawasaki Model.” <i>Nonlinearity</i>, vol. 33, no. 2, IOP Publishing, 2020,
    pp. 864–91, doi:<a href="https://doi.org/10.1088/1361-6544/ab5174">10.1088/1361-6544/ab5174</a>.
  short: F. Cornalba, T. Shardlow, J. Zimmer, Nonlinearity 33 (2020) 864–891.
date_created: 2020-04-05T22:00:49Z
date_published: 2020-01-10T00:00:00Z
date_updated: 2023-08-18T10:26:07Z
day: '10'
department:
- _id: JuFi
doi: 10.1088/1361-6544/ab5174
external_id:
  arxiv:
  - '1811.06448'
  isi:
  - '000508175400001'
intvolume: '        33'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1811.06448
month: '01'
oa: 1
oa_version: Preprint
page: 864-891
publication: Nonlinearity
publication_identifier:
  eissn:
  - '13616544'
  issn:
  - '09517715'
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: From weakly interacting particles to a regularised Dean-Kawasaki model
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 33
year: '2020'
...
---
_id: '7638'
abstract:
- lang: eng
  text: Following on from our recent work, we investigate a stochastic approach to
    non-equilibrium quantum spin systems. We show how the method can be applied to
    a variety of physical observables and for different initial conditions. We provide
    exact formulae of broad applicability for the time-dependence of expectation values
    and correlation functions following a quantum quench in terms of averages over
    classical stochastic processes. We further explore the behavior of the classical
    stochastic variables in the presence of dynamical quantum phase transitions, including
    results for their distributions and correlation functions. We provide details
    on the numerical solution of the associated stochastic differential equations,
    and examine the growth of fluctuations in the classical description. We discuss
    the strengths and limitations of the current implementation of the stochastic
    approach and the potential for further development.
article_number: '013106'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefano
  full_name: De Nicola, Stefano
  id: 42832B76-F248-11E8-B48F-1D18A9856A87
  last_name: De Nicola
  orcid: 0000-0002-4842-6671
- first_name: B.
  full_name: Doyon, B.
  last_name: Doyon
- first_name: M. J.
  full_name: Bhaseen, M. J.
  last_name: Bhaseen
citation:
  ama: 'De Nicola S, Doyon B, Bhaseen MJ. Non-equilibrium quantum spin dynamics from
    classical stochastic processes. <i>Journal of Statistical Mechanics: Theory and
    Experiment</i>. 2020;2020(1). doi:<a href="https://doi.org/10.1088/1742-5468/ab6093">10.1088/1742-5468/ab6093</a>'
  apa: 'De Nicola, S., Doyon, B., &#38; Bhaseen, M. J. (2020). Non-equilibrium quantum
    spin dynamics from classical stochastic processes. <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>. IOP Publishing. <a href="https://doi.org/10.1088/1742-5468/ab6093">https://doi.org/10.1088/1742-5468/ab6093</a>'
  chicago: 'De Nicola, Stefano, B. Doyon, and M. J. Bhaseen. “Non-Equilibrium Quantum
    Spin Dynamics from Classical Stochastic Processes.” <i>Journal of Statistical
    Mechanics: Theory and Experiment</i>. IOP Publishing, 2020. <a href="https://doi.org/10.1088/1742-5468/ab6093">https://doi.org/10.1088/1742-5468/ab6093</a>.'
  ieee: 'S. De Nicola, B. Doyon, and M. J. Bhaseen, “Non-equilibrium quantum spin
    dynamics from classical stochastic processes,” <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>, vol. 2020, no. 1. IOP Publishing, 2020.'
  ista: 'De Nicola S, Doyon B, Bhaseen MJ. 2020. Non-equilibrium quantum spin dynamics
    from classical stochastic processes. Journal of Statistical Mechanics: Theory
    and Experiment. 2020(1), 013106.'
  mla: 'De Nicola, Stefano, et al. “Non-Equilibrium Quantum Spin Dynamics from Classical
    Stochastic Processes.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>,
    vol. 2020, no. 1, 013106, IOP Publishing, 2020, doi:<a href="https://doi.org/10.1088/1742-5468/ab6093">10.1088/1742-5468/ab6093</a>.'
  short: 'S. De Nicola, B. Doyon, M.J. Bhaseen, Journal of Statistical Mechanics:
    Theory and Experiment 2020 (2020).'
date_created: 2020-04-05T22:00:50Z
date_published: 2020-01-22T00:00:00Z
date_updated: 2023-08-18T10:27:15Z
day: '22'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1088/1742-5468/ab6093
ec_funded: 1
external_id:
  arxiv:
  - '1909.13142'
  isi:
  - '000520187500001'
file:
- access_level: open_access
  checksum: 4030e683c15d30b7b4794ec7dc1b6537
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-06T13:15:49Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7648'
  file_name: 2020_JournStatisticalMech_DeNicola.pdf
  file_size: 3159026
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '      2020'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: 'Journal of Statistical Mechanics: Theory and Experiment'
publication_identifier:
  eissn:
  - '17425468'
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-equilibrium quantum spin dynamics from classical stochastic processes
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2020
year: '2020'
...
---
_id: '7643'
acknowledgement: 'This work was supported by the European Research Council under the
  European Union’s Horizon 2020 research and innovation Programme (ERC grant agreement
  number 742985), and the Austrian Science Fund (FWF, grant number I 3630-B25) to
  JF. HH is supported by the China Scholarship Council (CSC scholarship). '
article_processing_charge: No
article_type: letter_note
author:
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: Hana
  full_name: Rakusova, Hana
  id: 4CAAA450-78D2-11EA-8E57-B40A396E08BA
  last_name: Rakusova
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Yuzhou
  full_name: Zhang, Yuzhou
  id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-2627-6956
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. SCF TIR1/AFB auxin signaling
    for bending termination during shoot gravitropism. <i>Plant Physiology</i>. 2020;183(5):37-40.
    doi:<a href="https://doi.org/10.1104/pp.20.00212">10.1104/pp.20.00212</a>
  apa: Han, H., Rakusova, H., Verstraeten, I., Zhang, Y., &#38; Friml, J. (2020).
    SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism.
    <i>Plant Physiology</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1104/pp.20.00212">https://doi.org/10.1104/pp.20.00212</a>
  chicago: Han, Huibin, Hana Rakusova, Inge Verstraeten, Yuzhou Zhang, and Jiří Friml.
    “SCF TIR1/AFB Auxin Signaling for Bending Termination during Shoot Gravitropism.”
    <i>Plant Physiology</i>. American Society of Plant Biologists, 2020. <a href="https://doi.org/10.1104/pp.20.00212">https://doi.org/10.1104/pp.20.00212</a>.
  ieee: H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, and J. Friml, “SCF TIR1/AFB
    auxin signaling for bending termination during shoot gravitropism,” <i>Plant Physiology</i>,
    vol. 183, no. 5. American Society of Plant Biologists, pp. 37–40, 2020.
  ista: Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. 2020. SCF TIR1/AFB auxin
    signaling for bending termination during shoot gravitropism. Plant Physiology.
    183(5), 37–40.
  mla: Han, Huibin, et al. “SCF TIR1/AFB Auxin Signaling for Bending Termination during
    Shoot Gravitropism.” <i>Plant Physiology</i>, vol. 183, no. 5, American Society
    of Plant Biologists, 2020, pp. 37–40, doi:<a href="https://doi.org/10.1104/pp.20.00212">10.1104/pp.20.00212</a>.
  short: H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, J. Friml, Plant Physiology
    183 (2020) 37–40.
date_created: 2020-04-06T10:06:40Z
date_published: 2020-05-08T00:00:00Z
date_updated: 2023-09-07T13:13:04Z
day: '08'
department:
- _id: JiFr
doi: 10.1104/pp.20.00212
ec_funded: 1
external_id:
  isi:
  - '000536641800018'
  pmid:
  - '32107280'
intvolume: '       183'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1104/pp.20.00212
month: '05'
oa: 1
oa_version: Published Version
page: 37-40
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
  eissn:
  - 1532-2548
  issn:
  - 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
related_material:
  record:
  - id: '8589'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 183
year: '2020'
...
---
_id: '7646'
abstract:
- lang: eng
  text: In plant cells, environmental stressors promote changes in connectivity between
    the cortical ER and the PM. Although this process is tightly regulated in space
    and time, the molecular signals and structural components mediating these changes
    in inter-organelle communication are only starting to be characterized. In this
    report, we confirm the presence of a putative tethering complex containing the
    synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein
    1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow
    responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent
    rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+)
    rare earth elements (REEs). Although REEs are generally used as non-selective
    cation channel blockers at the PM, here we show that the slow internalization
    of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular
    signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the
    PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes.
    We propose that the observed EPCS rearrangements act as a slow adaptive response
    to sustained stress conditions, and that this process involves the accumulation
    of stress-specific phosphoinositides species at the PM.
article_processing_charge: No
article_type: original
author:
- first_name: E
  full_name: Lee, E
  last_name: Lee
- first_name: B
  full_name: Vila Nova Santana, B
  last_name: Vila Nova Santana
- first_name: E
  full_name: Samuels, E
  last_name: Samuels
- first_name: F
  full_name: Benitez-Fuente, F
  last_name: Benitez-Fuente
- first_name: E
  full_name: Corsi, E
  last_name: Corsi
- first_name: MA
  full_name: Botella, MA
  last_name: Botella
- first_name: J
  full_name: Perez-Sancho, J
  last_name: Perez-Sancho
- first_name: S
  full_name: Vanneste, S
  last_name: Vanneste
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: A
  full_name: Macho, A
  last_name: Macho
- first_name: A
  full_name: Alves Azevedo, A
  last_name: Alves Azevedo
- first_name: A
  full_name: Rosado, A
  last_name: Rosado
citation:
  ama: Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. 2020;71(14):3986–3998. doi:<a
    href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>
  apa: Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E.,
    Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent
    and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in
    Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a
    href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>
  chicago: Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella,
    J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and
    PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.”
    <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1093/jxb/eraa138">https://doi.org/10.1093/jxb/eraa138</a>.
  ieee: E. Lee <i>et al.</i>, “Rare earth elements induce cytoskeleton-dependent and
    PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,”
    <i>Journal of Experimental Botany</i>, vol. 71, no. 14. Oxford University Press,
    pp. 3986–3998, 2020.
  ista: Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella
    M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020.
    Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
    of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental
    Botany. 71(14), 3986–3998.
  mla: Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated
    Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal
    of Experimental Botany</i>, vol. 71, no. 14, Oxford University Press, 2020, pp.
    3986–3998, doi:<a href="https://doi.org/10.1093/jxb/eraa138">10.1093/jxb/eraa138</a>.
  short: E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M.
    Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A.
    Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.
date_created: 2020-04-06T10:57:08Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2023-08-18T10:27:52Z
day: '06'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/jxb/eraa138
external_id:
  isi:
  - '000553125400007'
  pmid:
  - '32179893'
file:
- access_level: open_access
  checksum: b06aaaa93dc41896da805fe4b75cf3a1
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-06T07:41:35Z
  date_updated: 2020-10-06T07:41:35Z
  file_id: '8613'
  file_name: 2020_JourExperimBotany_Lee.pdf
  file_size: 1916031
  relation: main_file
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file_date_updated: 2020-10-06T07:41:35Z
has_accepted_license: '1'
intvolume: '        71'
isi: 1
issue: '14'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 3986–3998
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
  eissn:
  - 1460-2431
  issn:
  - 0022-0957
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement
  of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 71
year: '2020'
...
---
_id: '7650'
abstract:
- lang: eng
  text: We consider a dilute, homogeneous Bose gas at positive temperature. The system
    is investigated in the Gross–Pitaevskii limit, where the scattering length a is
    so small that the interaction energy is of the same order of magnitude as the
    spectral gap of the Laplacian, and for temperatures that are comparable to the
    critical temperature of the ideal gas. We show that the difference between the
    specific free energy of the interacting system and the one of the ideal gas is
    to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system
    and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show
    that the one-particle density matrix of any approximate minimizer of the Gibbs
    free energy functional is to leading order given by the one of the ideal gas.
    This in particular proves Bose–Einstein condensation with critical temperature
    given by the one of the ideal gas to leading order. One key ingredient of our
    proof is a novel use of the Gibbs variational principle that goes hand in hand
    with the c-number substitution.
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions.
  Financial support by the European Research Council (ERC) under the European Union’sHorizon
  2020 research and innovation programme (Grant Agreement No. 694227) is gratefully
  acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020
  research and innovation programme under the Marie Sklodowska-Curie Grant Agreement
  No. 836146.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Andreas
  full_name: Deuchert, Andreas
  id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
  last_name: Deuchert
  orcid: 0000-0003-3146-6746
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at
    positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. 2020;236(6):1217-1271.
    doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>
  apa: Deuchert, A., &#38; Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous
    Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>
  chicago: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s00205-020-01489-4">https://doi.org/10.1007/s00205-020-01489-4</a>.
  ieee: A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature,” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.
  ista: Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose
    gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6),
    1217–1271.
  mla: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
    Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>,
    vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:<a href="https://doi.org/10.1007/s00205-020-01489-4">10.1007/s00205-020-01489-4</a>.
  short: A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236
    (2020) 1217–1271.
date_created: 2020-04-08T15:18:03Z
date_published: 2020-03-09T00:00:00Z
date_updated: 2023-09-05T14:18:49Z
day: '09'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00205-020-01489-4
ec_funded: 1
external_id:
  arxiv:
  - '1901.11363'
  isi:
  - '000519415000001'
file:
- access_level: open_access
  checksum: b645fb64bfe95bbc05b3eea374109a9c
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-20T13:17:42Z
  date_updated: 2020-11-20T13:17:42Z
  file_id: '8785'
  file_name: 2020_ArchRatMechanicsAnalysis_Deuchert.pdf
  file_size: 704633
  relation: main_file
  success: 1
file_date_updated: 2020-11-20T13:17:42Z
has_accepted_license: '1'
intvolume: '       236'
isi: 1
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1217-1271
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
  eissn:
  - 1432-0673
  issn:
  - 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 236
year: '2020'
...
---
_id: '7651'
abstract:
- lang: eng
  text: The growth of snail shells can be described by simple mathematical rules.
    Variation in a few parameters can explain much of the diversity of shell shapes
    seen in nature. However, empirical studies of gastropod shell shape variation
    typically use geometric morphometric approaches, which do not capture this growth
    pattern. We have developed a way to infer a set of developmentally descriptive
    shape parameters based on three-dimensional logarithmic helicospiral growth and
    using landmarks from two-dimensional shell images as input. We demonstrate the
    utility of this approach, and compare it to the geometric morphometric approach,
    using a large set of Littorina saxatilis shells in which locally adapted populations
    differ in shape. Our method can be modified easily to make it applicable to a
    wide range of shell forms, which would allow for investigations of the similarities
    and differences between and within many different species of gastropods.
article_number: '20190721'
article_processing_charge: No
article_type: original
author:
- first_name: J.
  full_name: Larsson, J.
  last_name: Larsson
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: S.
  full_name: Bengmark, S.
  last_name: Bengmark
- first_name: T.
  full_name: Lundh, T.
  last_name: Lundh
- first_name: R. K.
  full_name: Butlin, R. K.
  last_name: Butlin
citation:
  ama: Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. A developmentally descriptive
    method for quantifying shape in gastropod shells. <i>Journal of The Royal Society
    Interface</i>. 2020;17(163). doi:<a href="https://doi.org/10.1098/rsif.2019.0721">10.1098/rsif.2019.0721</a>
  apa: Larsson, J., Westram, A. M., Bengmark, S., Lundh, T., &#38; Butlin, R. K. (2020).
    A developmentally descriptive method for quantifying shape in gastropod shells.
    <i>Journal of The Royal Society Interface</i>. The Royal Society. <a href="https://doi.org/10.1098/rsif.2019.0721">https://doi.org/10.1098/rsif.2019.0721</a>
  chicago: Larsson, J., Anja M Westram, S. Bengmark, T. Lundh, and R. K. Butlin. “A
    Developmentally Descriptive Method for Quantifying Shape in Gastropod Shells.”
    <i>Journal of The Royal Society Interface</i>. The Royal Society, 2020. <a href="https://doi.org/10.1098/rsif.2019.0721">https://doi.org/10.1098/rsif.2019.0721</a>.
  ieee: J. Larsson, A. M. Westram, S. Bengmark, T. Lundh, and R. K. Butlin, “A developmentally
    descriptive method for quantifying shape in gastropod shells,” <i>Journal of The
    Royal Society Interface</i>, vol. 17, no. 163. The Royal Society, 2020.
  ista: Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. 2020. A developmentally
    descriptive method for quantifying shape in gastropod shells. Journal of The Royal
    Society Interface. 17(163), 20190721.
  mla: Larsson, J., et al. “A Developmentally Descriptive Method for Quantifying Shape
    in Gastropod Shells.” <i>Journal of The Royal Society Interface</i>, vol. 17,
    no. 163, 20190721, The Royal Society, 2020, doi:<a href="https://doi.org/10.1098/rsif.2019.0721">10.1098/rsif.2019.0721</a>.
  short: J. Larsson, A.M. Westram, S. Bengmark, T. Lundh, R.K. Butlin, Journal of
    The Royal Society Interface 17 (2020).
date_created: 2020-04-08T15:19:17Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2021-01-12T08:14:41Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1098/rsif.2019.0721
file:
- access_level: open_access
  checksum: 4eb102304402f5c56432516b84df86d6
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T12:31:16Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7660'
  file_name: 2020_JournRoyalSociety_Larsson.pdf
  file_size: 1556190
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        17'
issue: '163'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Journal of The Royal Society Interface
publication_identifier:
  eissn:
  - 1742-5662
  issn:
  - 1742-5689
publication_status: published
publisher: The Royal Society
quality_controlled: '1'
scopus_import: 1
status: public
title: A developmentally descriptive method for quantifying shape in gastropod shells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2020'
...
---
_id: '7652'
abstract:
- lang: eng
  text: Organisms cope with change by taking advantage of transcriptional regulators.
    However, when faced with rare environments, the evolution of transcriptional regulators
    and their promoters may be too slow. Here, we investigate whether the intrinsic
    instability of gene duplication and amplification provides a generic alternative
    to canonical gene regulation. Using real-time monitoring of gene-copy-number mutations
    in Escherichia coli, we show that gene duplications and amplifications enable
    adaptation to fluctuating environments by rapidly generating copy-number and,
    therefore, expression-level polymorphisms. This amplification-mediated gene expression
    tuning (AMGET) occurs on timescales that are similar to canonical gene regulation
    and can respond to rapid environmental changes. Mathematical modelling shows that
    amplifications also tune gene expression in stochastic environments in which transcription-factor-based
    schemes are hard to evolve or maintain. The fleeting nature of gene amplifications
    gives rise to a generic population-level mechanism that relies on genetic heterogeneity
    to rapidly tune the expression of any gene, without leaving any genomic signature.
acknowledgement: We thank L. Hurst, N. Barton, M. Pleska, M. Steinrück, B. Kavcic
  and A. Staron for input on the manuscript, and To. Bergmiller and R. Chait for help
  with microfluidics experiments. I.T. is a recipient the OMV fellowship. R.G. is
  a recipient of a DOC (Doctoral Fellowship Programme of the Austrian Academy of Sciences)
  Fellowship of the Austrian Academy of Sciences.
article_processing_charge: No
article_type: original
author:
- first_name: Isabella
  full_name: Tomanek, Isabella
  id: 3981F020-F248-11E8-B48F-1D18A9856A87
  last_name: Tomanek
  orcid: 0000-0001-6197-363X
- first_name: Rok
  full_name: Grah, Rok
  id: 483E70DE-F248-11E8-B48F-1D18A9856A87
  last_name: Grah
  orcid: 0000-0003-2539-3560
- first_name: M.
  full_name: Lagator, M.
  last_name: Lagator
- first_name: A. M. C.
  full_name: Andersson, A. M. C.
  last_name: Andersson
- first_name: Jonathan P
  full_name: Bollback, Jonathan P
  id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
  last_name: Bollback
  orcid: 0000-0002-4624-4612
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
citation:
  ama: Tomanek I, Grah R, Lagator M, et al. Gene amplification as a form of population-level
    gene expression regulation. <i>Nature Ecology &#38; Evolution</i>. 2020;4(4):612-625.
    doi:<a href="https://doi.org/10.1038/s41559-020-1132-7">10.1038/s41559-020-1132-7</a>
  apa: Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkačik,
    G., &#38; Guet, C. C. (2020). Gene amplification as a form of population-level
    gene expression regulation. <i>Nature Ecology &#38; Evolution</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41559-020-1132-7">https://doi.org/10.1038/s41559-020-1132-7</a>
  chicago: Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P
    Bollback, Gašper Tkačik, and Calin C Guet. “Gene Amplification as a Form of Population-Level
    Gene Expression Regulation.” <i>Nature Ecology &#38; Evolution</i>. Springer Nature,
    2020. <a href="https://doi.org/10.1038/s41559-020-1132-7">https://doi.org/10.1038/s41559-020-1132-7</a>.
  ieee: I. Tomanek <i>et al.</i>, “Gene amplification as a form of population-level
    gene expression regulation,” <i>Nature Ecology &#38; Evolution</i>, vol. 4, no.
    4. Springer Nature, pp. 612–625, 2020.
  ista: Tomanek I, Grah R, Lagator M, Andersson AMC, Bollback JP, Tkačik G, Guet CC.
    2020. Gene amplification as a form of population-level gene expression regulation.
    Nature Ecology &#38; Evolution. 4(4), 612–625.
  mla: Tomanek, Isabella, et al. “Gene Amplification as a Form of Population-Level
    Gene Expression Regulation.” <i>Nature Ecology &#38; Evolution</i>, vol. 4, no.
    4, Springer Nature, 2020, pp. 612–25, doi:<a href="https://doi.org/10.1038/s41559-020-1132-7">10.1038/s41559-020-1132-7</a>.
  short: I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik,
    C.C. Guet, Nature Ecology &#38; Evolution 4 (2020) 612–625.
date_created: 2020-04-08T15:20:53Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2024-03-25T23:30:20Z
day: '01'
ddc:
- '570'
department:
- _id: GaTk
- _id: CaGu
doi: 10.1038/s41559-020-1132-7
external_id:
  isi:
  - '000519008300005'
file:
- access_level: open_access
  checksum: ef3bbf42023e30b2c24a6278025d2040
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-09T09:56:01Z
  date_updated: 2020-10-09T09:56:01Z
  file_id: '8640'
  file_name: 2020_NatureEcolEvo_Tomanek.pdf
  file_size: 745242
  relation: main_file
  success: 1
file_date_updated: 2020-10-09T09:56:01Z
has_accepted_license: '1'
intvolume: '         4'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 612-625
project:
- _id: 267C84F4-B435-11E9-9278-68D0E5697425
  name: Biophysically realistic genotype-phenotype maps for regulatory networks
publication: Nature Ecology & Evolution
publication_identifier:
  issn:
  - 2397-334X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/how-to-thrive-without-gene-regulation/
  record:
  - id: '8155'
    relation: dissertation_contains
    status: public
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    status: public
  - id: '8653'
    relation: used_in_publication
    status: public
scopus_import: '1'
status: public
title: Gene amplification as a form of population-level gene expression regulation
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 4
year: '2020'
...
---
_id: '7656'
abstract:
- lang: eng
  text: 'We propose that correlations among neurons are generically strong enough
    to organize neural activity patterns into a discrete set of clusters, which can
    each be viewed as a population codeword. Our reasoning starts with the analysis
    of retinal ganglion cell data using maximum entropy models, showing that the population
    is robustly in a frustrated, marginally sub-critical, or glassy, state. This leads
    to an argument that neural populations in many other brain areas might share this
    structure. Next, we use latent variable models to show that this glassy state
    possesses well-defined clusters of neural activity. Clusters have three appealing
    properties: (i) clusters exhibit error correction, i.e., they are reproducibly
    elicited by the same stimulus despite variability at the level of constituent
    neurons; (ii) clusters encode qualitatively different visual features than their
    constituent neurons; and (iii) clusters can be learned by downstream neural circuits
    in an unsupervised fashion. We hypothesize that these properties give rise to
    a “learnable” neural code which the cortical hierarchy uses to extract increasingly
    complex features without supervision or reinforcement.'
article_number: '20'
article_processing_charge: No
article_type: original
author:
- first_name: Michael J.
  full_name: Berry, Michael J.
  last_name: Berry
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: 'Berry MJ, Tkačik G. Clustering of neural activity: A design principle for
    population codes. <i>Frontiers in Computational Neuroscience</i>. 2020;14. doi:<a
    href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>'
  apa: 'Berry, M. J., &#38; Tkačik, G. (2020). Clustering of neural activity: A design
    principle for population codes. <i>Frontiers in Computational Neuroscience</i>.
    Frontiers. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>'
  chicago: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity:
    A Design Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>.
    Frontiers, 2020. <a href="https://doi.org/10.3389/fncom.2020.00020">https://doi.org/10.3389/fncom.2020.00020</a>.'
  ieee: 'M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle
    for population codes,” <i>Frontiers in Computational Neuroscience</i>, vol. 14.
    Frontiers, 2020.'
  ista: 'Berry MJ, Tkačik G. 2020. Clustering of neural activity: A design principle
    for population codes. Frontiers in Computational Neuroscience. 14, 20.'
  mla: 'Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design
    Principle for Population Codes.” <i>Frontiers in Computational Neuroscience</i>,
    vol. 14, 20, Frontiers, 2020, doi:<a href="https://doi.org/10.3389/fncom.2020.00020">10.3389/fncom.2020.00020</a>.'
  short: M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020).
date_created: 2020-04-12T22:00:40Z
date_published: 2020-03-13T00:00:00Z
date_updated: 2023-08-18T10:30:11Z
day: '13'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.3389/fncom.2020.00020
external_id:
  isi:
  - '000525543200001'
  pmid:
  - '32231528'
file:
- access_level: open_access
  checksum: 2b1da23823eae9cedbb42d701945b61e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-14T12:20:39Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7659'
  file_name: 2020_Frontiers_Berry.pdf
  file_size: 4082937
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file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Computational Neuroscience
publication_identifier:
  eissn:
  - '16625188'
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Clustering of neural activity: A design principle for population codes'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2020'
...
---
_id: '7663'
abstract:
- lang: eng
  text: Wood, as the most abundant carbon dioxide storing bioresource, is currently
    driven beyond its traditional use through creative innovations and nanotechnology.
    For many properties the micro- and nanostructure plays a crucial role and one
    key challenge is control and detection of chemical and physical processes in the
    confined microstructure and nanopores of the wooden cell wall. In this study,
    correlative Raman and atomic force microscopy show high potential for tracking
    in situ molecular rearrangement of wood polymers during compression. More water
    molecules (interpreted as wider cellulose microfibril distances) and disentangling
    of hemicellulose chains are detected in the opened cell wall regions, whereas
    an increase of lignin is revealed in the compressed areas. These results support
    a new more “loose” cell wall model based on flexible lignin nanodomains and advance
    our knowledge of the molecular reorganization during deformation of wood for optimized
    processing and utilization.
article_processing_charge: No
article_type: original
author:
- first_name: Martin
  full_name: Felhofer, Martin
  last_name: Felhofer
- first_name: Peter
  full_name: Bock, Peter
  last_name: Bock
- first_name: Adya
  full_name: Singh, Adya
  last_name: Singh
- first_name: Batirtze
  full_name: Prats Mateu, Batirtze
  id: 299FE892-F248-11E8-B48F-1D18A9856A87
  last_name: Prats Mateu
- first_name: Ronald
  full_name: Zirbs, Ronald
  last_name: Zirbs
- first_name: Notburga
  full_name: Gierlinger, Notburga
  last_name: Gierlinger
citation:
  ama: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. Wood deformation
    leads to rearrangement of molecules at the nanoscale. <i>Nano Letters</i>. 2020;20(4):2647-2653.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>
  apa: Felhofer, M., Bock, P., Singh, A., Prats Mateu, B., Zirbs, R., &#38; Gierlinger,
    N. (2020). Wood deformation leads to rearrangement of molecules at the nanoscale.
    <i>Nano Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>
  chicago: Felhofer, Martin, Peter Bock, Adya Singh, Batirtze Prats Mateu, Ronald
    Zirbs, and Notburga Gierlinger. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>. American Chemical Society, 2020. <a href="https://doi.org/10.1021/acs.nanolett.0c00205">https://doi.org/10.1021/acs.nanolett.0c00205</a>.
  ieee: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, and N. Gierlinger,
    “Wood deformation leads to rearrangement of molecules at the nanoscale,” <i>Nano
    Letters</i>, vol. 20, no. 4. American Chemical Society, pp. 2647–2653, 2020.
  ista: Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. 2020. Wood
    deformation leads to rearrangement of molecules at the nanoscale. Nano Letters.
    20(4), 2647–2653.
  mla: Felhofer, Martin, et al. “Wood Deformation Leads to Rearrangement of Molecules
    at the Nanoscale.” <i>Nano Letters</i>, vol. 20, no. 4, American Chemical Society,
    2020, pp. 2647–53, doi:<a href="https://doi.org/10.1021/acs.nanolett.0c00205">10.1021/acs.nanolett.0c00205</a>.
  short: M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, N. Gierlinger,
    Nano Letters 20 (2020) 2647–2653.
date_created: 2020-04-19T22:00:54Z
date_published: 2020-04-08T00:00:00Z
date_updated: 2023-08-21T06:12:09Z
day: '08'
ddc:
- '530'
department:
- _id: MaLo
doi: 10.1021/acs.nanolett.0c00205
external_id:
  isi:
  - '000526413400055'
  pmid:
  - '32196350'
file:
- access_level: open_access
  checksum: fe46146a9c4c620592a1932a8599069e
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T10:43:36Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7667'
  file_name: 2020_NanoLetters_Felhofer.pdf
  file_size: 7108014
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2647-2653
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - '15306992'
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Wood deformation leads to rearrangement of molecules at the nanoscale
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 20
year: '2020'
...
---
_id: '7664'
abstract:
- lang: eng
  text: Metabotropic γ-aminobutyric acid (GABAB) receptors contribute to the control
    of network activity and information processing in hippocampal circuits by regulating
    neuronal excitability and synaptic transmission. The dysfunction in the dentate
    gyrus (DG) has been implicated in Alzheimer´s disease (AD). Given the involvement
    of GABAB receptors in AD, to determine their subcellular localisation and possible
    alteration in granule cells of the DG in a mouse model of AD at 12 months of age,
    we used high-resolution immunoelectron microscopic analysis. Immunohistochemistry
    at the light microscopic level showed that the regional and cellular expression
    pattern of GABAB1 was similar in an AD model mouse expressing mutated human amyloid
    precursor protein and presenilin1 (APP/PS1) and in age-matched wild type mice.
    High-resolution immunoelectron microscopy revealed a distance-dependent gradient
    of immunolabelling for GABAB receptors, increasing from proximal to distal dendrites
    in both wild type and APP/PS1 mice. However, the overall density of GABAB receptors
    at the neuronal surface of these postsynaptic compartments of granule cells was
    significantly reduced in APP/PS1 mice. Parallel to this reduction in surface receptors,
    we found a significant increase in GABAB1 at cytoplasmic sites. GABAB receptors
    were also detected at presynaptic sites in the molecular layer of the DG. We also
    found a decrease in plasma membrane GABAB receptors in axon terminals contacting
    dendritic spines of granule cells, which was more pronounced in the outer than
    in the inner molecular layer. Altogether, our data showing post- and presynaptic
    reduction in surface GABAB receptors in the DG suggest the alteration of the GABAB-mediated
    modulation of excitability and synaptic transmission in granule cells, which may
    contribute to the cognitive dysfunctions in the APP/PS1 model of AD
article_number: '2459'
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
  full_name: Martín-Belmonte, Alejandro
  last_name: Martín-Belmonte
- first_name: Carolina
  full_name: Aguado, Carolina
  last_name: Aguado
- first_name: Rocío
  full_name: Alfaro-Ruíz, Rocío
  last_name: Alfaro-Ruíz
- first_name: Ana Esther
  full_name: Moreno-Martínez, Ana Esther
  last_name: Moreno-Martínez
- first_name: Luis
  full_name: De La Ossa, Luis
  last_name: De La Ossa
- first_name: José
  full_name: Martínez-Hernández, José
  last_name: Martínez-Hernández
- first_name: Alain
  full_name: Buisson, Alain
  last_name: Buisson
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Yugo
  full_name: Fukazawa, Yugo
  last_name: Fukazawa
- first_name: Rafael
  full_name: Luján, Rafael
  last_name: Luján
citation:
  ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International journal of molecular sciences</i>. 2020;21(7). doi:<a
    href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>
  apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
    La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Density of GABAB receptors
    is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s
    disease. <i>International Journal of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>
  chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
    Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, Ryuichi
    Shigemoto, Yugo Fukazawa, and Rafael Luján. “Density of GABAB Receptors Is Reduced
    in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.”
    <i>International Journal of Molecular Sciences</i>. MDPI, 2020. <a href="https://doi.org/10.3390/ijms21072459">https://doi.org/10.3390/ijms21072459</a>.
  ieee: A. Martín-Belmonte <i>et al.</i>, “Density of GABAB receptors is reduced in
    granule cells of the hippocampus in a mouse model of Alzheimer’s disease,” <i>International
    journal of molecular sciences</i>, vol. 21, no. 7. MDPI, 2020.
  ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
    L, Martínez-Hernández J, Buisson A, Shigemoto R, Fukazawa Y, Luján R. 2020. Density
    of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model
    of Alzheimer’s disease. International journal of molecular sciences. 21(7), 2459.
  mla: Martín-Belmonte, Alejandro, et al. “Density of GABAB Receptors Is Reduced in
    Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>International
    Journal of Molecular Sciences</i>, vol. 21, no. 7, 2459, MDPI, 2020, doi:<a href="https://doi.org/10.3390/ijms21072459">10.3390/ijms21072459</a>.
  short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
    La Ossa, J. Martínez-Hernández, A. Buisson, R. Shigemoto, Y. Fukazawa, R. Luján,
    International Journal of Molecular Sciences 21 (2020).
date_created: 2020-04-19T22:00:55Z
date_published: 2020-04-02T00:00:00Z
date_updated: 2023-08-21T06:13:19Z
day: '02'
ddc:
- '570'
department:
- _id: RySh
doi: 10.3390/ijms21072459
external_id:
  isi:
  - '000535574200201'
  pmid:
  - '32252271'
file:
- access_level: open_access
  checksum: b9d2f1657d8c4a74b01a62b474d009b0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-04-20T11:43:18Z
  date_updated: 2020-07-14T12:48:01Z
  file_id: '7669'
  file_name: 2020_JournMolecSciences_Martin_Belmonte.pdf
  file_size: 2941197
  relation: main_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '7'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: International journal of molecular sciences
publication_identifier:
  eissn:
  - '14220067'
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density of GABAB receptors is reduced in granule cells of the hippocampus in
  a mouse model of Alzheimer's disease
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 21
year: '2020'
...
