---
_id: '12142'
abstract:
- lang: eng
  text: Theory for liability-scale models of the underlying genetic basis of complex
    disease provides an important way to interpret, compare, and understand results
    generated from biological studies. In particular, through estimation of the liability-scale
    heritability (LSH), liability models facilitate an understanding and comparison
    of the relative importance of genetic and environmental risk factors that shape
    different clinically important disease outcomes. Increasingly, large-scale biobank
    studies that link genetic information to electronic health records, containing
    hundreds of disease diagnosis indicators that mostly occur infrequently within
    the sample, are becoming available. Here, we propose an extension of the existing
    liability-scale model theory suitable for estimating LSH in biobank studies of
    low-prevalence disease. In a simulation study, we find that our derived expression
    yields lower mean square error (MSE) and is less sensitive to prevalence misspecification
    as compared to previous transformations for diseases with  =< 2% population prevalence
    and LSH of =< 0.45, especially if the biobank sample prevalence is less than that
    of the wider population. Applying our expression to 13 diagnostic outcomes of  =<
    3% prevalence in the UK Biobank study revealed important differences in LSH obtained
    from the different theoretical expressions that impact the conclusions made when
    comparing LSH across disease outcomes. This demonstrates the importance of careful
    consideration for estimation and prediction of low-prevalence disease outcomes
    and facilitates improved inference of the underlying genetic basis of  =< 2% population
    prevalence diseases, especially where biobank sample ascertainment results in
    a healthier sample population.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This project was funded by an SNSF Eccellenza grant to M.R.R. (PCEGP3-181181),
  core funding from the Institute of Science and Technology Austria, and core funding
  from the Department of Computational Biology of the University of Lausanne. Z.K.
  was funded by the Swiss National Science Foundation (310030-189147). This research
  was supported by the Scientific Service Units (SSUs) of IST Austria through resources
  provided by Scientific Computing (SciComp). We would like to thank the participants
  of the UK Biobank.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Sven E.
  full_name: Ojavee, Sven E.
  last_name: Ojavee
- first_name: Zoltan
  full_name: Kutalik, Zoltan
  last_name: Kutalik
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
citation:
  ama: Ojavee SE, Kutalik Z, Robinson MR. Liability-scale heritability estimation
    for biobank studies of low-prevalence disease. <i>The American Journal of Human
    Genetics</i>. 2022;109(11):2009-2017. doi:<a href="https://doi.org/10.1016/j.ajhg.2022.09.011">10.1016/j.ajhg.2022.09.011</a>
  apa: Ojavee, S. E., Kutalik, Z., &#38; Robinson, M. R. (2022). Liability-scale heritability
    estimation for biobank studies of low-prevalence disease. <i>The American Journal
    of Human Genetics</i>. Elsevier. <a href="https://doi.org/10.1016/j.ajhg.2022.09.011">https://doi.org/10.1016/j.ajhg.2022.09.011</a>
  chicago: Ojavee, Sven E., Zoltan Kutalik, and Matthew Richard Robinson. “Liability-Scale
    Heritability Estimation for Biobank Studies of Low-Prevalence Disease.” <i>The
    American Journal of Human Genetics</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.ajhg.2022.09.011">https://doi.org/10.1016/j.ajhg.2022.09.011</a>.
  ieee: S. E. Ojavee, Z. Kutalik, and M. R. Robinson, “Liability-scale heritability
    estimation for biobank studies of low-prevalence disease,” <i>The American Journal
    of Human Genetics</i>, vol. 109, no. 11. Elsevier, pp. 2009–2017, 2022.
  ista: Ojavee SE, Kutalik Z, Robinson MR. 2022. Liability-scale heritability estimation
    for biobank studies of low-prevalence disease. The American Journal of Human Genetics.
    109(11), 2009–2017.
  mla: Ojavee, Sven E., et al. “Liability-Scale Heritability Estimation for Biobank
    Studies of Low-Prevalence Disease.” <i>The American Journal of Human Genetics</i>,
    vol. 109, no. 11, Elsevier, 2022, pp. 2009–17, doi:<a href="https://doi.org/10.1016/j.ajhg.2022.09.011">10.1016/j.ajhg.2022.09.011</a>.
  short: S.E. Ojavee, Z. Kutalik, M.R. Robinson, The American Journal of Human Genetics
    109 (2022) 2009–2017.
date_created: 2023-01-12T12:05:28Z
date_published: 2022-11-03T00:00:00Z
date_updated: 2023-08-04T08:56:46Z
day: '03'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1016/j.ajhg.2022.09.011
external_id:
  isi:
  - '000898683500006'
file:
- access_level: open_access
  checksum: 4cd7f12bfe21a8237bb095eedfa26361
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T09:23:01Z
  date_updated: 2023-01-24T09:23:01Z
  file_id: '12353'
  file_name: 2022_AJHG_Ojavee.pdf
  file_size: 705195
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T09:23:01Z
has_accepted_license: '1'
intvolume: '       109'
isi: 1
issue: '11'
keyword:
- Genetics (clinical)
- Genetics
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 2009-2017
project:
- _id: 9B8D11D6-BA93-11EA-9121-9846C619BF3A
  grant_number: PCEGP3_181181
  name: Improving estimation and prediction of common complex disease risk
publication: The American Journal of Human Genetics
publication_identifier:
  issn:
  - 0002-9297
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Liability-scale heritability estimation for biobank studies of low-prevalence
  disease
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 109
year: '2022'
...
---
_id: '12143'
abstract:
- lang: eng
  text: MicroRNA (miRNA) and RNA interference (RNAi) pathways rely on small RNAs produced
    by Dicer endonucleases. Mammalian Dicer primarily supports the essential gene-regulating
    miRNA pathway, but how it is specifically adapted to miRNA biogenesis is unknown.
    We show that the adaptation entails a unique structural role of Dicer’s DExD/H
    helicase domain. Although mice tolerate loss of its putative ATPase function,
    the complete absence of the domain is lethal because it assures high-fidelity
    miRNA biogenesis. Structures of murine Dicer⋅miRNA precursor complexes revealed
    that the DExD/H domain has a helicase-unrelated structural function. It locks
    Dicer in a closed state, which facilitates miRNA precursor selection. Transition
    to a cleavage-competent open state is stimulated by Dicer-binding protein TARBP2.
    Absence of the DExD/H domain or its mutations unlocks the closed state, reduces
    substrate selectivity, and activates RNAi. Thus, the DExD/H domain structurally
    contributes to mammalian miRNA biogenesis and underlies mechanistical partitioning
    of miRNA and RNAi pathways.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: We thank Kristian Vlahovicek (University of Zagreb) for support of
  bioinformatics analyses and Vladimir Benes (EMBL Sequencing Facility) and Genomics
  and Bioinformatics Core Facility at the Institute of Molecular Genetics for help
  with RNA sequencing. The main funding was provided by the Czech Science Foundation
  (EXPRO grant 20-03950X to P.S. and 22-19896S to R. Stefl). Early stages of the work
  were supported by European Research Council grants under the European Union’s Horizon
  2020 Research and Innovation Programme (grants 647403 to P.S. and 649030 to R. Stefl).
  V.B., D.F.J., and F.H. were in part supported by PhD student fellowships from the
  Charles University; this work will be in part fulfilling requirements for a PhD
  degree as “school work.” Funding of D.Z. included the OP RDE project “Internal Grant
  Agency of Masaryk University” no. CZ.02.2.69/0.0/0.0/19_073/0016943. The Ministry
  of Education, Youth, and Sports of the Czech Republic (MEYS CR) provided institutional
  support for CEITEC 2020 project LQ1601. For technical support, we acknowledge EMBL
  Monterotondo’s genome engineering and transgenic core facilities, the Czech Centre
  for Phenogenomics at the Institute of Molecular Genetics (supported by RVO 68378050
  from the Czech Academy of Sciences and LM2018126 and CZ.02.1.01/0.0/0.0/18_046/0015861
  CCP Infrastructure Upgrade II from MEYS CR), the Cryo-EM and Proteomics Core Facilities
  (CEITEC, Masaryk University) supported by the CIISB research infrastructure (LM2018127
  from MEYS CR), and support from the Scientific Service Units of ISTA through resources
  from the Electron Microscopy Facility. Computational resources included e-Infrastruktura
  CZ (LM2018140) and ELIXIR-CZ (LM2018131) projects by MEYS CR and the Croatian National
  Centres of Research Excellence in Personalized Healthcare (#KK.01.1.1.01.0010) and
  Data Science and Advanced Cooperative Systems (#KK.01.1.1.01.0009) projects funded
  by the European Structural and Investment Funds grants.
article_processing_charge: No
article_type: original
author:
- first_name: David
  full_name: Zapletal, David
  last_name: Zapletal
- first_name: Eliska
  full_name: Taborska, Eliska
  last_name: Taborska
- first_name: Josef
  full_name: Pasulka, Josef
  last_name: Pasulka
- first_name: Radek
  full_name: Malik, Radek
  last_name: Malik
- first_name: Karel
  full_name: Kubicek, Karel
  last_name: Kubicek
- first_name: Martina
  full_name: Zanova, Martina
  last_name: Zanova
- first_name: Christian
  full_name: Much, Christian
  last_name: Much
- first_name: Marek
  full_name: Sebesta, Marek
  last_name: Sebesta
- first_name: Valeria
  full_name: Buccheri, Valeria
  last_name: Buccheri
- first_name: Filip
  full_name: Horvat, Filip
  last_name: Horvat
- first_name: Irena
  full_name: Jenickova, Irena
  last_name: Jenickova
- first_name: Michaela
  full_name: Prochazkova, Michaela
  last_name: Prochazkova
- first_name: Jan
  full_name: Prochazka, Jan
  last_name: Prochazka
- first_name: Matyas
  full_name: Pinkas, Matyas
  last_name: Pinkas
- first_name: Jiri
  full_name: Novacek, Jiri
  last_name: Novacek
- first_name: Diego F.
  full_name: Joseph, Diego F.
  last_name: Joseph
- first_name: Radislav
  full_name: Sedlacek, Radislav
  last_name: Sedlacek
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
- first_name: Dónal
  full_name: O’Carroll, Dónal
  last_name: O’Carroll
- first_name: Richard
  full_name: Stefl, Richard
  last_name: Stefl
- first_name: Petr
  full_name: Svoboda, Petr
  last_name: Svoboda
citation:
  ama: Zapletal D, Taborska E, Pasulka J, et al. Structural and functional basis of
    mammalian microRNA biogenesis by Dicer. <i>Molecular Cell</i>. 2022;82(21):4064-4079.e13.
    doi:<a href="https://doi.org/10.1016/j.molcel.2022.10.010">10.1016/j.molcel.2022.10.010</a>
  apa: Zapletal, D., Taborska, E., Pasulka, J., Malik, R., Kubicek, K., Zanova, M.,
    … Svoboda, P. (2022). Structural and functional basis of mammalian microRNA biogenesis
    by Dicer. <i>Molecular Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.molcel.2022.10.010">https://doi.org/10.1016/j.molcel.2022.10.010</a>
  chicago: Zapletal, David, Eliska Taborska, Josef Pasulka, Radek Malik, Karel Kubicek,
    Martina Zanova, Christian Much, et al. “Structural and Functional Basis of Mammalian
    MicroRNA Biogenesis by Dicer.” <i>Molecular Cell</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.molcel.2022.10.010">https://doi.org/10.1016/j.molcel.2022.10.010</a>.
  ieee: D. Zapletal <i>et al.</i>, “Structural and functional basis of mammalian microRNA
    biogenesis by Dicer,” <i>Molecular Cell</i>, vol. 82, no. 21. Elsevier, p. 4064–4079.e13,
    2022.
  ista: Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta
    M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek
    J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural
    and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell.
    82(21), 4064–4079.e13.
  mla: Zapletal, David, et al. “Structural and Functional Basis of Mammalian MicroRNA
    Biogenesis by Dicer.” <i>Molecular Cell</i>, vol. 82, no. 21, Elsevier, 2022,
    p. 4064–4079.e13, doi:<a href="https://doi.org/10.1016/j.molcel.2022.10.010">10.1016/j.molcel.2022.10.010</a>.
  short: D. Zapletal, E. Taborska, J. Pasulka, R. Malik, K. Kubicek, M. Zanova, C.
    Much, M. Sebesta, V. Buccheri, F. Horvat, I. Jenickova, M. Prochazkova, J. Prochazka,
    M. Pinkas, J. Novacek, D.F. Joseph, R. Sedlacek, C. Bernecky, D. O’Carroll, R.
    Stefl, P. Svoboda, Molecular Cell 82 (2022) 4064–4079.e13.
date_created: 2023-01-12T12:05:36Z
date_published: 2022-11-03T00:00:00Z
date_updated: 2023-08-04T08:57:17Z
day: '03'
ddc:
- '570'
department:
- _id: CaBe
doi: 10.1016/j.molcel.2022.10.010
external_id:
  isi:
  - '000898565300011'
  pmid:
  - '36332606'
file:
- access_level: open_access
  checksum: 999e443b54e4fdaa2542ca5a97619731
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T09:29:02Z
  date_updated: 2023-01-24T09:29:02Z
  file_id: '12354'
  file_name: 2022_MolecularCell_Zapletal.pdf
  file_size: 7368534
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T09:29:02Z
has_accepted_license: '1'
intvolume: '        82'
isi: 1
issue: '21'
keyword:
- Cell Biology
- Molecular Biology
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 4064-4079.e13
pmid: 1
publication: Molecular Cell
publication_identifier:
  issn:
  - 1097-2765
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structural and functional basis of mammalian microRNA biogenesis by Dicer
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 82
year: '2022'
...
---
_id: '12144'
abstract:
- lang: eng
  text: The phytohormone auxin is the major coordinative signal in plant development1,
    mediating transcriptional reprogramming by a well-established canonical signalling
    pathway. TRANSPORT INHIBITOR RESPONSE 1 (TIR1)/AUXIN-SIGNALING F-BOX (AFB) auxin
    receptors are F-box subunits of ubiquitin ligase complexes. In response to auxin,
    they associate with Aux/IAA transcriptional repressors and target them for degradation
    via ubiquitination2,3. Here we identify adenylate cyclase (AC) activity as an
    additional function of TIR1/AFB receptors across land plants. Auxin, together
    with Aux/IAAs, stimulates cAMP production. Three separate mutations in the AC
    motif of the TIR1 C-terminal region, all of which abolish the AC activity, each
    render TIR1 ineffective in mediating gravitropism and sustained auxin-induced
    root growth inhibition, and also affect auxin-induced transcriptional regulation.
    These results highlight the importance of TIR1/AFB AC activity in canonical auxin
    signalling. They also identify a unique phytohormone receptor cassette combining
    F-box and AC motifs, and the role of cAMP as a second messenger in plants.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: This research was supported by the Lab Support Facility (LSF) and
  the Imaging and Optics Facility (IOF) of IST Austria. We thank C. Gehring for suggestions
  and advice; and K. U. Torii and G. Stacey for seeds and plasmids. This project was
  funded by a European Research Council Advanced Grant (ETAP-742985). M.F.K. and R.N.
  acknowledge the support of the EU MSCA-IF project CrysPINs (792329). M.K. was supported
  by the project POWR.03.05.00-00-Z302/17 Universitas Copernicana Thoruniensis in
  Futuro–IDS “Academia Copernicana”. CIDG acknowledges support from UKRI under Future
  Leaders Fellowship grant number MR/T020652/1.
article_processing_charge: No
article_type: original
author:
- first_name: Linlin
  full_name: Qi, Linlin
  id: 44B04502-A9ED-11E9-B6FC-583AE6697425
  last_name: Qi
  orcid: 0000-0001-5187-8401
- first_name: Mateusz
  full_name: Kwiatkowski, Mateusz
  last_name: Kwiatkowski
- first_name: Huihuang
  full_name: Chen, Huihuang
  id: 83c96512-15b2-11ec-abd3-b7eede36184f
  last_name: Chen
- first_name: Lukas
  full_name: Hörmayer, Lukas
  id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Hörmayer
  orcid: 0000-0001-8295-2926
- first_name: Scott A
  full_name: Sinclair, Scott A
  id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
  last_name: Sinclair
  orcid: 0000-0002-4566-0593
- first_name: Minxia
  full_name: Zou, Minxia
  id: 5c243f41-03f3-11ec-841c-96faf48a7ef9
  last_name: Zou
- first_name: Charo I.
  full_name: del Genio, Charo I.
  last_name: del Genio
- first_name: Martin F.
  full_name: Kubeš, Martin F.
  last_name: Kubeš
- first_name: Richard
  full_name: Napier, Richard
  last_name: Napier
- first_name: Krzysztof
  full_name: Jaworski, Krzysztof
  last_name: Jaworski
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Qi L, Kwiatkowski M, Chen H, et al. Adenylate cyclase activity of TIR1/AFB
    auxin receptors in plants. <i>Nature</i>. 2022;611(7934):133-138. doi:<a href="https://doi.org/10.1038/s41586-022-05369-7">10.1038/s41586-022-05369-7</a>
  apa: Qi, L., Kwiatkowski, M., Chen, H., Hörmayer, L., Sinclair, S. A., Zou, M.,
    … Friml, J. (2022). Adenylate cyclase activity of TIR1/AFB auxin receptors in
    plants. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05369-7">https://doi.org/10.1038/s41586-022-05369-7</a>
  chicago: Qi, Linlin, Mateusz Kwiatkowski, Huihuang Chen, Lukas Hörmayer, Scott A
    Sinclair, Minxia Zou, Charo I. del Genio, et al. “Adenylate Cyclase Activity of
    TIR1/AFB Auxin Receptors in Plants.” <i>Nature</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s41586-022-05369-7">https://doi.org/10.1038/s41586-022-05369-7</a>.
  ieee: L. Qi <i>et al.</i>, “Adenylate cyclase activity of TIR1/AFB auxin receptors
    in plants,” <i>Nature</i>, vol. 611, no. 7934. Springer Nature, pp. 133–138, 2022.
  ista: Qi L, Kwiatkowski M, Chen H, Hörmayer L, Sinclair SA, Zou M, del Genio CI,
    Kubeš MF, Napier R, Jaworski K, Friml J. 2022. Adenylate cyclase activity of TIR1/AFB
    auxin receptors in plants. Nature. 611(7934), 133–138.
  mla: Qi, Linlin, et al. “Adenylate Cyclase Activity of TIR1/AFB Auxin Receptors
    in Plants.” <i>Nature</i>, vol. 611, no. 7934, Springer Nature, 2022, pp. 133–38,
    doi:<a href="https://doi.org/10.1038/s41586-022-05369-7">10.1038/s41586-022-05369-7</a>.
  short: L. Qi, M. Kwiatkowski, H. Chen, L. Hörmayer, S.A. Sinclair, M. Zou, C.I.
    del Genio, M.F. Kubeš, R. Napier, K. Jaworski, J. Friml, Nature 611 (2022) 133–138.
date_created: 2023-01-12T12:06:05Z
date_published: 2022-11-03T00:00:00Z
date_updated: 2023-10-03T11:04:53Z
day: '03'
department:
- _id: JiFr
doi: 10.1038/s41586-022-05369-7
ec_funded: 1
external_id:
  isi:
  - '000875061600013'
  pmid:
  - '36289340'
intvolume: '       611'
isi: 1
issue: '7934'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://wrap.warwick.ac.uk/168325/1/WRAP-denylate-cyclase-activity-TIR1-AFB-auxin-receptors-root-growth-22.pdf
month: '11'
oa: 1
oa_version: Submitted Version
page: 133-138
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 611
year: '2022'
...
---
_id: '12145'
abstract:
- lang: eng
  text: In the class of strictly convex smooth boundaries each of which has no strip
    around its boundary foliated by invariant curves, we prove that the Taylor coefficients
    of the “normalized” Mather’s β-function are invariant under C∞-conjugacies. In
    contrast, we prove that any two elliptic billiard maps are C0-conjugate near their
    respective boundaries, and C∞-conjugate, near the boundary and away from a line
    passing through the center of the underlying ellipse. We also prove that, if the
    billiard maps corresponding to two ellipses are topologically conjugate, then
    the two ellipses are similar.
acknowledgement: "We are grateful to the anonymous referees for their careful reading
  and valuable remarks and\r\ncomments which helped to improve the paper significantly.
  We gratefully acknowledge support from the European Research Council (ERC) through
  the Advanced Grant “SPERIG” (#885707)."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Edmond
  full_name: Koudjinan, Edmond
  id: 52DF3E68-AEFA-11EA-95A4-124A3DDC885E
  last_name: Koudjinan
  orcid: 0000-0003-2640-4049
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
citation:
  ama: Koudjinan E, Kaloshin V. On some invariants of Birkhoff billiards under conjugacy.
    <i>Regular and Chaotic Dynamics</i>. 2022;27(6):525-537. doi:<a href="https://doi.org/10.1134/S1560354722050021">10.1134/S1560354722050021</a>
  apa: Koudjinan, E., &#38; Kaloshin, V. (2022). On some invariants of Birkhoff billiards
    under conjugacy. <i>Regular and Chaotic Dynamics</i>. Springer Nature. <a href="https://doi.org/10.1134/S1560354722050021">https://doi.org/10.1134/S1560354722050021</a>
  chicago: Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff
    Billiards under Conjugacy.” <i>Regular and Chaotic Dynamics</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1134/S1560354722050021">https://doi.org/10.1134/S1560354722050021</a>.
  ieee: E. Koudjinan and V. Kaloshin, “On some invariants of Birkhoff billiards under
    conjugacy,” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6. Springer Nature,
    pp. 525–537, 2022.
  ista: Koudjinan E, Kaloshin V. 2022. On some invariants of Birkhoff billiards under
    conjugacy. Regular and Chaotic Dynamics. 27(6), 525–537.
  mla: Koudjinan, Edmond, and Vadim Kaloshin. “On Some Invariants of Birkhoff Billiards
    under Conjugacy.” <i>Regular and Chaotic Dynamics</i>, vol. 27, no. 6, Springer
    Nature, 2022, pp. 525–37, doi:<a href="https://doi.org/10.1134/S1560354722050021">10.1134/S1560354722050021</a>.
  short: E. Koudjinan, V. Kaloshin, Regular and Chaotic Dynamics 27 (2022) 525–537.
date_created: 2023-01-12T12:06:49Z
date_published: 2022-10-03T00:00:00Z
date_updated: 2023-08-04T08:59:14Z
day: '03'
department:
- _id: VaKa
doi: 10.1134/S1560354722050021
ec_funded: 1
external_id:
  arxiv:
  - '2105.14640'
  isi:
  - '000865267300002'
intvolume: '        27'
isi: 1
issue: '6'
keyword:
- Mechanical Engineering
- Applied Mathematics
- Mathematical Physics
- Modeling and Simulation
- Statistical and Nonlinear Physics
- Mathematics (miscellaneous)
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2105.14640
month: '10'
oa: 1
oa_version: Preprint
page: 525-537
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '885707'
  name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Regular and Chaotic Dynamics
publication_identifier:
  eissn:
  - 1468-4845
  issn:
  - 1560-3547
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1134/s1560354722060107
scopus_import: '1'
status: public
title: On some invariants of Birkhoff billiards under conjugacy
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 27
year: '2022'
...
---
_id: '12146'
abstract:
- lang: eng
  text: 'In this paper, we explore the stability and dynamical relevance of a wide
    variety of steady, time-periodic, quasiperiodic, and chaotic flows arising between
    orthogonally stretching parallel plates. We first explore the stability of all
    the steady flow solution families formerly identified by Ayats et al. [“Flows
    between orthogonally stretching parallel plates,” Phys. Fluids 33, 024103 (2021)],
    concluding that only the one that originates from the Stokesian approximation
    is actually stable. When both plates are shrinking at identical or nearly the
    same deceleration rates, this Stokesian flow exhibits a Hopf bifurcation that
    leads to stable time-periodic regimes. The resulting time-periodic orbits or flows
    are tracked for different Reynolds numbers and stretching rates while monitoring
    their Floquet exponents to identify secondary instabilities. It is found that
    these time-periodic flows also exhibit Neimark–Sacker bifurcations, generating
    stable quasiperiodic flows (tori) that may sometimes give rise to chaotic dynamics
    through a Ruelle–Takens–Newhouse scenario. However, chaotic dynamics is unusually
    observed, as the quasiperiodic flows generally become phase-locked through a resonance
    mechanism before a strange attractor may arise, thus restoring the time-periodicity
    of the flow. In this work, we have identified and tracked four different resonance
    regions, also known as Arnold tongues or horns. In particular, the 1 : 4 strong
    resonance region is explored in great detail, where the identified scenarios are
    in very good agreement with normal form theory. '
acknowledgement: "This work was supported by the Spanish MINECO under Grant Nos. FIS2017-85794-P
  and PRX18/00179, the Spanish MICINN through Grant No. PID2020-114043GB-I00, and
  the\r\nGeneralitat de Catalunya under Grant No. 2017-SGR-785. B.W.’s research was
  also supported by the Chinese Scholarship Council through Grant CSC No. 201806440152."
article_number: '114111'
article_processing_charge: No
article_type: original
author:
- first_name: B.
  full_name: Wang, B.
  last_name: Wang
- first_name: Roger
  full_name: Ayats López, Roger
  id: ab77522d-073b-11ed-8aff-e71b39258362
  last_name: Ayats López
  orcid: 0000-0001-6572-0621
- first_name: A.
  full_name: Meseguer, A.
  last_name: Meseguer
- first_name: F.
  full_name: Marques, F.
  last_name: Marques
citation:
  ama: Wang B, Ayats López R, Meseguer A, Marques F. Phase-locking flows between orthogonally
    stretching parallel plates. <i>Physics of Fluids</i>. 2022;34(11). doi:<a href="https://doi.org/10.1063/5.0124152">10.1063/5.0124152</a>
  apa: Wang, B., Ayats López, R., Meseguer, A., &#38; Marques, F. (2022). Phase-locking
    flows between orthogonally stretching parallel plates. <i>Physics of Fluids</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0124152">https://doi.org/10.1063/5.0124152</a>
  chicago: Wang, B., Roger Ayats López, A. Meseguer, and F. Marques. “Phase-Locking
    Flows between Orthogonally Stretching Parallel Plates.” <i>Physics of Fluids</i>.
    AIP Publishing, 2022. <a href="https://doi.org/10.1063/5.0124152">https://doi.org/10.1063/5.0124152</a>.
  ieee: B. Wang, R. Ayats López, A. Meseguer, and F. Marques, “Phase-locking flows
    between orthogonally stretching parallel plates,” <i>Physics of Fluids</i>, vol.
    34, no. 11. AIP Publishing, 2022.
  ista: Wang B, Ayats López R, Meseguer A, Marques F. 2022. Phase-locking flows between
    orthogonally stretching parallel plates. Physics of Fluids. 34(11), 114111.
  mla: Wang, B., et al. “Phase-Locking Flows between Orthogonally Stretching Parallel
    Plates.” <i>Physics of Fluids</i>, vol. 34, no. 11, 114111, AIP Publishing, 2022,
    doi:<a href="https://doi.org/10.1063/5.0124152">10.1063/5.0124152</a>.
  short: B. Wang, R. Ayats López, A. Meseguer, F. Marques, Physics of Fluids 34 (2022).
date_created: 2023-01-12T12:06:58Z
date_published: 2022-11-04T00:00:00Z
date_updated: 2023-10-03T11:07:58Z
day: '04'
department:
- _id: BjHo
doi: 10.1063/5.0124152
external_id:
  isi:
  - '000880665300024'
intvolume: '        34'
isi: 1
issue: '11'
keyword:
- Condensed Matter Physics
- Fluid Flow and Transfer Processes
- Mechanics of Materials
- Computational Mechanics
- Mechanical Engineering
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://upcommons.upc.edu/handle/2117/385635
month: '11'
oa: 1
oa_version: Submitted Version
publication: Physics of Fluids
publication_identifier:
  eissn:
  - 1089-7666
  issn:
  - 1070-6631
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phase-locking flows between orthogonally stretching parallel plates
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2022'
...
---
_id: '12147'
abstract:
- lang: eng
  text: Continuous-time neural networks are a class of machine learning systems that
    can tackle representation learning on spatiotemporal decision-making tasks. These
    models are typically represented by continuous differential equations. However,
    their expressive power when they are deployed on computers is bottlenecked by
    numerical differential equation solvers. This limitation has notably slowed down
    the scaling and understanding of numerous natural physical phenomena such as the
    dynamics of nervous systems. Ideally, we would circumvent this bottleneck by solving
    the given dynamical system in closed form. This is known to be intractable in
    general. Here, we show that it is possible to closely approximate the interaction
    between neurons and synapses—the building blocks of natural and artificial neural
    networks—constructed by liquid time-constant networks efficiently in closed form.
    To this end, we compute a tightly bounded approximation of the solution of an
    integral appearing in liquid time-constant dynamics that has had no known closed-form
    solution so far. This closed-form solution impacts the design of continuous-time
    and continuous-depth neural models. For instance, since time appears explicitly
    in closed form, the formulation relaxes the need for complex numerical solvers.
    Consequently, we obtain models that are between one and five orders of magnitude
    faster in training and inference compared with differential equation-based counterparts.
    More importantly, in contrast to ordinary differential equation-based continuous
    networks, closed-form networks can scale remarkably well compared with other deep
    learning instances. Lastly, as these models are derived from liquid networks,
    they show good performance in time-series modelling compared with advanced recurrent
    neural network models.
acknowledgement: This research was supported in part by the AI2050 program at Schmidt
  Futures (grant G-22-63172), the Boeing Company, and the United States Air Force
  Research Laboratory and the United States Air Force Artificial Intelligence Accelerator
  and was accomplished under cooperative agreement number FA8750-19-2-1000. The views
  and conclusions contained in this document are those of the authors and should not
  be interpreted as representing the official policies, either expressed or implied,
  of the United States Air Force or the U.S. Government. The U.S. Government is authorized
  to reproduce and distribute reprints for Government purposes, notwithstanding any
  copyright notation herein. This work was further supported by The Boeing Company
  and Office of Naval Research grant N00014-18-1-2830. M.T. is supported by the Poul
  Due Jensen Foundation, grant 883901. M.L. was supported in part by the Austrian
  Science Fund under grant Z211-N23 (Wittgenstein Award). A.A. was supported by the
  National Science Foundation Graduate Research Fellowship Program. We thank T.-H.
  Wang, P. Kao, M. Chahine, W. Xiao, X. Li, L. Yin and Y. Ben for useful suggestions
  and for testing of CfC models to confirm the results across other domains.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ramin
  full_name: Hasani, Ramin
  last_name: Hasani
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Alexander
  full_name: Amini, Alexander
  last_name: Amini
- first_name: Lucas
  full_name: Liebenwein, Lucas
  last_name: Liebenwein
- first_name: Aaron
  full_name: Ray, Aaron
  last_name: Ray
- first_name: Max
  full_name: Tschaikowski, Max
  last_name: Tschaikowski
- first_name: Gerald
  full_name: Teschl, Gerald
  last_name: Teschl
- first_name: Daniela
  full_name: Rus, Daniela
  last_name: Rus
citation:
  ama: Hasani R, Lechner M, Amini A, et al. Closed-form continuous-time neural networks.
    <i>Nature Machine Intelligence</i>. 2022;4(11):992-1003. doi:<a href="https://doi.org/10.1038/s42256-022-00556-7">10.1038/s42256-022-00556-7</a>
  apa: Hasani, R., Lechner, M., Amini, A., Liebenwein, L., Ray, A., Tschaikowski,
    M., … Rus, D. (2022). Closed-form continuous-time neural networks. <i>Nature Machine
    Intelligence</i>. Springer Nature. <a href="https://doi.org/10.1038/s42256-022-00556-7">https://doi.org/10.1038/s42256-022-00556-7</a>
  chicago: Hasani, Ramin, Mathias Lechner, Alexander Amini, Lucas Liebenwein, Aaron
    Ray, Max Tschaikowski, Gerald Teschl, and Daniela Rus. “Closed-Form Continuous-Time
    Neural Networks.” <i>Nature Machine Intelligence</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s42256-022-00556-7">https://doi.org/10.1038/s42256-022-00556-7</a>.
  ieee: R. Hasani <i>et al.</i>, “Closed-form continuous-time neural networks,” <i>Nature
    Machine Intelligence</i>, vol. 4, no. 11. Springer Nature, pp. 992–1003, 2022.
  ista: Hasani R, Lechner M, Amini A, Liebenwein L, Ray A, Tschaikowski M, Teschl
    G, Rus D. 2022. Closed-form continuous-time neural networks. Nature Machine Intelligence.
    4(11), 992–1003.
  mla: Hasani, Ramin, et al. “Closed-Form Continuous-Time Neural Networks.” <i>Nature
    Machine Intelligence</i>, vol. 4, no. 11, Springer Nature, 2022, pp. 992–1003,
    doi:<a href="https://doi.org/10.1038/s42256-022-00556-7">10.1038/s42256-022-00556-7</a>.
  short: R. Hasani, M. Lechner, A. Amini, L. Liebenwein, A. Ray, M. Tschaikowski,
    G. Teschl, D. Rus, Nature Machine Intelligence 4 (2022) 992–1003.
date_created: 2023-01-12T12:07:21Z
date_published: 2022-11-15T00:00:00Z
date_updated: 2023-08-04T09:00:10Z
day: '15'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1038/s42256-022-00556-7
external_id:
  arxiv:
  - '2106.13898'
  isi:
  - '000884215600003'
file:
- access_level: open_access
  checksum: b4789122ce04bfb4ac042390f59aaa8b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T09:49:44Z
  date_updated: 2023-01-24T09:49:44Z
  file_id: '12355'
  file_name: 2022_NatureMachineIntelligence_Hasani.pdf
  file_size: 3259553
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T09:49:44Z
has_accepted_license: '1'
intvolume: '         4'
isi: 1
issue: '11'
keyword:
- Artificial Intelligence
- Computer Networks and Communications
- Computer Vision and Pattern Recognition
- Human-Computer Interaction
- Software
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 992-1003
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: The Wittgenstein Prize
publication: Nature Machine Intelligence
publication_identifier:
  issn:
  - 2522-5839
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s42256-022-00597-y
scopus_import: '1'
status: public
title: Closed-form continuous-time neural networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 4
year: '2022'
...
---
_id: '12148'
abstract:
- lang: eng
  text: 'We prove a general local law for Wigner matrices that optimally handles observables
    of arbitrary rank and thus unifies the well-known averaged and isotropic local
    laws. As an application, we prove a central limit theorem in quantum unique ergodicity
    (QUE): that is, we show that the quadratic forms of a general deterministic matrix
    A on the bulk eigenvectors of a Wigner matrix have approximately Gaussian fluctuation.
    For the bulk spectrum, we thus generalise our previous result [17] as valid for
    test matrices A of large rank as well as the result of Benigni and Lopatto [7]
    as valid for specific small-rank observables.'
acknowledgement: L.E. acknowledges support by ERC Advanced Grant ‘RMTBeyond’ No. 101020331.
  D.S. acknowledges the support of Dr. Max Rössler, the Walter Haefner Foundation
  and the ETH Zürich Foundation.
article_number: e96
article_processing_charge: No
article_type: original
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Cipolloni G, Erdös L, Schröder DJ. Rank-uniform local law for Wigner matrices.
    <i>Forum of Mathematics, Sigma</i>. 2022;10. doi:<a href="https://doi.org/10.1017/fms.2022.86">10.1017/fms.2022.86</a>
  apa: Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Rank-uniform local
    law for Wigner matrices. <i>Forum of Mathematics, Sigma</i>. Cambridge University
    Press. <a href="https://doi.org/10.1017/fms.2022.86">https://doi.org/10.1017/fms.2022.86</a>
  chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Rank-Uniform
    Local Law for Wigner Matrices.” <i>Forum of Mathematics, Sigma</i>. Cambridge
    University Press, 2022. <a href="https://doi.org/10.1017/fms.2022.86">https://doi.org/10.1017/fms.2022.86</a>.
  ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Rank-uniform local law for Wigner
    matrices,” <i>Forum of Mathematics, Sigma</i>, vol. 10. Cambridge University Press,
    2022.
  ista: Cipolloni G, Erdös L, Schröder DJ. 2022. Rank-uniform local law for Wigner
    matrices. Forum of Mathematics, Sigma. 10, e96.
  mla: Cipolloni, Giorgio, et al. “Rank-Uniform Local Law for Wigner Matrices.” <i>Forum
    of Mathematics, Sigma</i>, vol. 10, e96, Cambridge University Press, 2022, doi:<a
    href="https://doi.org/10.1017/fms.2022.86">10.1017/fms.2022.86</a>.
  short: G. Cipolloni, L. Erdös, D.J. Schröder, Forum of Mathematics, Sigma 10 (2022).
date_created: 2023-01-12T12:07:30Z
date_published: 2022-10-27T00:00:00Z
date_updated: 2023-08-04T09:00:35Z
day: '27'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1017/fms.2022.86
ec_funded: 1
external_id:
  isi:
  - '000873719200001'
file:
- access_level: open_access
  checksum: 94a049aeb1eea5497aa097712a73c400
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-24T10:02:40Z
  date_updated: 2023-01-24T10:02:40Z
  file_id: '12356'
  file_name: 2022_ForumMath_Cipolloni.pdf
  file_size: 817089
  relation: main_file
  success: 1
file_date_updated: 2023-01-24T10:02:40Z
has_accepted_license: '1'
intvolume: '        10'
isi: 1
keyword:
- Computational Mathematics
- Discrete Mathematics and Combinatorics
- Geometry and Topology
- Mathematical Physics
- Statistics and Probability
- Algebra and Number Theory
- Theoretical Computer Science
- Analysis
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: Forum of Mathematics, Sigma
publication_identifier:
  issn:
  - 2050-5094
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rank-uniform local law for Wigner matrices
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2022'
...
---
_id: '12278'
abstract:
- lang: eng
  text: Mercury telluride (HgTe) thin films with a critical thickness of 6.5 nm are
    predicted to possess a gapless Dirac-like band structure. We report a comprehensive
    study on gated and optically doped samples by magnetooptical spectroscopy in the
    THz range. The quasi-classical analysis of the cyclotron resonance allowed the
    mapping of the band dispersion of Dirac charge carriers in a broad range of electron
    and hole doping. A smooth transition through the charge neutrality point between
    Dirac holes and electrons was observed. An additional peak coming from a second
    type of holes with an almost density-independent mass of around 0.04m0 was detected
    in the hole-doping range and attributed to an asymmetric spin splitting of the
    Dirac cone. Spectroscopic evidence for disorder-induced band energy fluctuations
    could not be detected in present cyclotron resonance experiments.
acknowledgement: "This work was supported by the Austrian Science Funds (W1243, I
  3456-N27, I 5539-N).\r\nOpen Access Funding by the Austrian Science Fund (FWF)."
article_number: '2492'
article_processing_charge: Yes
article_type: original
author:
- first_name: Alexey
  full_name: Shuvaev, Alexey
  last_name: Shuvaev
- first_name: Uladzislau
  full_name: Dziom, Uladzislau
  id: 6A9A37C2-8C5C-11E9-AE53-F2FDE5697425
  last_name: Dziom
  orcid: 0000-0002-1648-0999
- first_name: Jan
  full_name: Gospodarič, Jan
  last_name: Gospodarič
- first_name: Elena G.
  full_name: Novik, Elena G.
  last_name: Novik
- first_name: Alena A.
  full_name: Dobretsova, Alena A.
  last_name: Dobretsova
- first_name: Nikolay N.
  full_name: Mikhailov, Nikolay N.
  last_name: Mikhailov
- first_name: Ze Don
  full_name: Kvon, Ze Don
  last_name: Kvon
- first_name: Andrei
  full_name: Pimenov, Andrei
  last_name: Pimenov
citation:
  ama: Shuvaev A, Dziom U, Gospodarič J, et al. Band structure near the Dirac Point
    in HgTe quantum wells with critical thickness. <i>Nanomaterials</i>. 2022;12(14).
    doi:<a href="https://doi.org/10.3390/nano12142492">10.3390/nano12142492</a>
  apa: Shuvaev, A., Dziom, U., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov,
    N. N., … Pimenov, A. (2022). Band structure near the Dirac Point in HgTe quantum
    wells with critical thickness. <i>Nanomaterials</i>. MDPI. <a href="https://doi.org/10.3390/nano12142492">https://doi.org/10.3390/nano12142492</a>
  chicago: Shuvaev, Alexey, Uladzislau Dziom, Jan Gospodarič, Elena G. Novik, Alena
    A. Dobretsova, Nikolay N. Mikhailov, Ze Don Kvon, and Andrei Pimenov. “Band Structure
    near the Dirac Point in HgTe Quantum Wells with Critical Thickness.” <i>Nanomaterials</i>.
    MDPI, 2022. <a href="https://doi.org/10.3390/nano12142492">https://doi.org/10.3390/nano12142492</a>.
  ieee: A. Shuvaev <i>et al.</i>, “Band structure near the Dirac Point in HgTe quantum
    wells with critical thickness,” <i>Nanomaterials</i>, vol. 12, no. 14. MDPI, 2022.
  ista: Shuvaev A, Dziom U, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon
    ZD, Pimenov A. 2022. Band structure near the Dirac Point in HgTe quantum wells
    with critical thickness. Nanomaterials. 12(14), 2492.
  mla: Shuvaev, Alexey, et al. “Band Structure near the Dirac Point in HgTe Quantum
    Wells with Critical Thickness.” <i>Nanomaterials</i>, vol. 12, no. 14, 2492, MDPI,
    2022, doi:<a href="https://doi.org/10.3390/nano12142492">10.3390/nano12142492</a>.
  short: A. Shuvaev, U. Dziom, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov,
    Z.D. Kvon, A. Pimenov, Nanomaterials 12 (2022).
date_created: 2023-01-16T10:02:31Z
date_published: 2022-07-20T00:00:00Z
date_updated: 2026-07-02T09:51:59Z
day: '20'
ddc:
- '530'
department:
- _id: ZhAl
doi: 10.3390/nano12142492
external_id:
  isi:
  - '000834401600001'
file:
- access_level: open_access
  checksum: efad6742f89f39a18bec63116dd689a0
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-30T11:16:54Z
  date_updated: 2023-01-30T11:16:54Z
  file_id: '12459'
  file_name: 2022_Nanomaterials_Shuvaev.pdf
  file_size: 464840
  relation: main_file
  success: 1
file_date_updated: 2023-01-30T11:16:54Z
has_accepted_license: '1'
intvolume: '        12'
isi: 1
issue: '14'
keyword:
- General Materials Science
- General Chemical Engineering
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Nanomaterials
publication_identifier:
  issn:
  - 2079-4991
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Band structure near the Dirac Point in HgTe quantum wells with critical thickness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2022'
...
---
_id: '12155'
abstract:
- lang: eng
  text: The growing demand of thermal management in various fields such as miniaturized
    5G chips has motivated researchers to develop new and high-performance solid-state
    refrigeration technologies, typically including multicaloric and thermoelectric
    (TE) cooling. Among them, TE cooling has attracted huge attention owing to its
    advantages of rapid response, large cooling temperature difference, high stability,
    and tunable device size. Bi2Te3-based alloys have long been the only commercialized
    TE cooling materials, while novel systems SnSe and Mg3(Bi,Sb)2 have recently been
    discovered as potential candidates. However, challenges and problems still require
    to be summarized and further resolved for realizing better cooling performance.
    In this review, we systematically investigate TE cooling from its internal mechanism,
    crucial parameters, to device design and applications. Furthermore, we summarize
    the current optimization strategies for existing TE cooling materials, and finally
    provide some personal prospects especially the material-planification concept
    on future research on establishing better TE cooling.
acknowledgement: We acknowledge support from the National Key Research and Development
  Program of China (2018YFA0702100), the National Natural Science Foundation of China
  (51571007, 51772012, 52002011 and 52002042), the Basic Science Center Project of
  National Natural Science Foundation of China (51788104), Beijing Natural Science
  Foundation (JQ18004), 111 Project (B17002), and the National Science Fund for Distinguished
  Young Scholars (51925101).
article_processing_charge: No
article_type: original
author:
- first_name: Yongxin
  full_name: Qin, Yongxin
  last_name: Qin
- first_name: Bingchao
  full_name: Qin, Bingchao
  last_name: Qin
- first_name: Dongyang
  full_name: Wang, Dongyang
  last_name: Wang
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Li-Dong
  full_name: Zhao, Li-Dong
  last_name: Zhao
citation:
  ama: 'Qin Y, Qin B, Wang D, Chang C, Zhao L-D. Solid-state cooling: Thermoelectrics.
    <i>Energy &#38; Environmental Science</i>. 2022;15(11):4527-4541. doi:<a href="https://doi.org/10.1039/d2ee02408j">10.1039/d2ee02408j</a>'
  apa: 'Qin, Y., Qin, B., Wang, D., Chang, C., &#38; Zhao, L.-D. (2022). Solid-state
    cooling: Thermoelectrics. <i>Energy &#38; Environmental Science</i>. Royal Society
    of Chemistry. <a href="https://doi.org/10.1039/d2ee02408j">https://doi.org/10.1039/d2ee02408j</a>'
  chicago: 'Qin, Yongxin, Bingchao Qin, Dongyang Wang, Cheng Chang, and Li-Dong Zhao.
    “Solid-State Cooling: Thermoelectrics.” <i>Energy &#38; Environmental Science</i>.
    Royal Society of Chemistry, 2022. <a href="https://doi.org/10.1039/d2ee02408j">https://doi.org/10.1039/d2ee02408j</a>.'
  ieee: 'Y. Qin, B. Qin, D. Wang, C. Chang, and L.-D. Zhao, “Solid-state cooling:
    Thermoelectrics,” <i>Energy &#38; Environmental Science</i>, vol. 15, no. 11.
    Royal Society of Chemistry, pp. 4527–4541, 2022.'
  ista: 'Qin Y, Qin B, Wang D, Chang C, Zhao L-D. 2022. Solid-state cooling: Thermoelectrics.
    Energy &#38; Environmental Science. 15(11), 4527–4541.'
  mla: 'Qin, Yongxin, et al. “Solid-State Cooling: Thermoelectrics.” <i>Energy &#38;
    Environmental Science</i>, vol. 15, no. 11, Royal Society of Chemistry, 2022,
    pp. 4527–41, doi:<a href="https://doi.org/10.1039/d2ee02408j">10.1039/d2ee02408j</a>.'
  short: Y. Qin, B. Qin, D. Wang, C. Chang, L.-D. Zhao, Energy &#38; Environmental
    Science 15 (2022) 4527–4541.
das_tickbox: '1'
date_created: 2023-01-12T12:08:41Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2026-06-18T07:57:42Z
day: '01'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1039/d2ee02408j
external_id:
  isi:
  - '000863642400001'
intvolume: '        15'
isi: 1
issue: '11'
keyword:
- Pollution
- Nuclear Energy and Engineering
- Renewable Energy
- Sustainability and the Environment
- Environmental Chemistry
language:
- iso: eng
month: '11'
oa_version: None
page: 4527-4541
publication: Energy & Environmental Science
publication_identifier:
  eissn:
  - 1754-5706
  issn:
  - 1754-5692
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1039/d3ee90067c
scopus_import: '1'
status: public
title: 'Solid-state cooling: Thermoelectrics'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2022'
...
---
_id: '12151'
abstract:
- lang: eng
  text: The k-sample G(k,W) from a graphon W:[0,1]2→[0,1] is the random graph on {1,…,k},
    where we sample x1,…,xk∈[0,1] uniformly at random and make each pair {i,j}⊆{1,…,k}
    an edge with probability W(xi,xj), with all these choices being mutually independent.
    Let the random variable Xk(W) be the number of edges in  G(k,W). Vera T. Sós asked
    in 2012 whether two graphons U, W are necessarily weakly isomorphic if the random
    variables Xk(U) and Xk(W) have the same distribution for every integer k≥2. This
    question when one of the graphons W is a constant function was answered positively
    by Endre Csóka and independently by Jacob Fox, Tomasz Łuczak and Vera T. Sós.
    Here we investigate the question when W is a 2-step graphon and prove that the
    answer is positive for a 3-dimensional family of such graphons. We also present
    some related results.
acknowledgement: "Supported by Austrian Science Fund (FWF) Grant I3747. Supported
  by ERC Advanced Grant 101020255 and Leverhulme Research Project Grant RPG-2018-424.\r\nAn
  extended abstract of this paper appeared in the Proceedings of the European Conference\r\non
  Combinatorics, Graph Theory and Applications (EuroComb 2021), CRM Research Perspectives,
  Springer."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Oliver
  full_name: Cooley, Oliver
  id: 43f4ddd0-a46b-11ec-8df6-ef3703bd721d
  last_name: Cooley
- first_name: M.
  full_name: Kang, M.
  last_name: Kang
- first_name: O.
  full_name: Pikhurko, O.
  last_name: Pikhurko
citation:
  ama: Cooley O, Kang M, Pikhurko O. On a question of Vera T. Sós about size forcing
    of graphons. <i>Acta Mathematica Hungarica</i>. 2022;168:1-26. doi:<a href="https://doi.org/10.1007/s10474-022-01265-8">10.1007/s10474-022-01265-8</a>
  apa: Cooley, O., Kang, M., &#38; Pikhurko, O. (2022). On a question of Vera T. Sós
    about size forcing of graphons. <i>Acta Mathematica Hungarica</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s10474-022-01265-8">https://doi.org/10.1007/s10474-022-01265-8</a>
  chicago: Cooley, Oliver, M. Kang, and O. Pikhurko. “On a Question of Vera T. Sós
    about Size Forcing of Graphons.” <i>Acta Mathematica Hungarica</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1007/s10474-022-01265-8">https://doi.org/10.1007/s10474-022-01265-8</a>.
  ieee: O. Cooley, M. Kang, and O. Pikhurko, “On a question of Vera T. Sós about size
    forcing of graphons,” <i>Acta Mathematica Hungarica</i>, vol. 168. Springer Nature,
    pp. 1–26, 2022.
  ista: Cooley O, Kang M, Pikhurko O. 2022. On a question of Vera T. Sós about size
    forcing of graphons. Acta Mathematica Hungarica. 168, 1–26.
  mla: Cooley, Oliver, et al. “On a Question of Vera T. Sós about Size Forcing of
    Graphons.” <i>Acta Mathematica Hungarica</i>, vol. 168, Springer Nature, 2022,
    pp. 1–26, doi:<a href="https://doi.org/10.1007/s10474-022-01265-8">10.1007/s10474-022-01265-8</a>.
  short: O. Cooley, M. Kang, O. Pikhurko, Acta Mathematica Hungarica 168 (2022) 1–26.
das_tickbox: '1'
date_created: 2023-01-12T12:07:59Z
date_published: 2022-11-23T00:00:00Z
date_updated: 2026-06-18T07:57:21Z
day: '23'
ddc:
- '500'
department:
- _id: MaKw
doi: 10.1007/s10474-022-01265-8
external_id:
  arxiv:
  - '2103.09114'
  isi:
  - '000886839900006'
intvolume: '       168'
isi: 1
keyword:
- graphon
- k-sample
- graphon forcing
- graph container
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2103.09114'
month: '11'
oa: 1
oa_version: Preprint
page: 1-26
publication: Acta Mathematica Hungarica
publication_identifier:
  eissn:
  - 1588-2632
  issn:
  - 0236-5294
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On a question of Vera T. Sós about size forcing of graphons
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 168
year: '2022'
...
---
_id: '11737'
abstract:
- lang: eng
  text: Spin-orbit coupling in thin HgTe quantum wells results in a relativistic-like
    electron band structure, making it a versatile solid state platform to observe
    and control nontrivial electrodynamic phenomena. Here we report an observation
    of universal terahertz (THz) transparency determined by fine-structure constant
    α≈1/137 in 6.5-nm-thick HgTe layer, close to the critical thickness separating
    phases with topologically different electronic band structure. Using THz spectroscopy
    in a magnetic field we obtain direct evidence of asymmetric spin splitting of
    the Dirac cone. This particle-hole asymmetry facilitates optical control of edge
    spin currents in the quantum wells.
acknowledgement: This work was supported by the Austrian Science Funds (W 1243, I
  3456-N27, I 5539-N).
article_number: '045302'
article_processing_charge: No
article_type: original
author:
- first_name: Uladzislau
  full_name: Dziom, Uladzislau
  id: 6A9A37C2-8C5C-11E9-AE53-F2FDE5697425
  last_name: Dziom
  orcid: 0000-0002-1648-0999
- first_name: A.
  full_name: Shuvaev, A.
  last_name: Shuvaev
- first_name: J.
  full_name: Gospodarič, J.
  last_name: Gospodarič
- first_name: E. G.
  full_name: Novik, E. G.
  last_name: Novik
- first_name: A. A.
  full_name: Dobretsova, A. A.
  last_name: Dobretsova
- first_name: N. N.
  full_name: Mikhailov, N. N.
  last_name: Mikhailov
- first_name: Z. D.
  full_name: Kvon, Z. D.
  last_name: Kvon
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
- first_name: A.
  full_name: Pimenov, A.
  last_name: Pimenov
citation:
  ama: Dziom U, Shuvaev A, Gospodarič J, et al. Universal transparency and asymmetric
    spin splitting near the Dirac point in HgTe quantum wells. <i>Physical Review
    B</i>. 2022;106(4). doi:<a href="https://doi.org/10.1103/PhysRevB.106.045302">10.1103/PhysRevB.106.045302</a>
  apa: Dziom, U., Shuvaev, A., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov,
    N. N., … Pimenov, A. (2022). Universal transparency and asymmetric spin splitting
    near the Dirac point in HgTe quantum wells. <i>Physical Review B</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevB.106.045302">https://doi.org/10.1103/PhysRevB.106.045302</a>
  chicago: Dziom, Uladzislau, A. Shuvaev, J. Gospodarič, E. G. Novik, A. A. Dobretsova,
    N. N. Mikhailov, Z. D. Kvon, Zhanybek Alpichshev, and A. Pimenov. “Universal Transparency
    and Asymmetric Spin Splitting near the Dirac Point in HgTe Quantum Wells.” <i>Physical
    Review B</i>. American Physical Society, 2022. <a href="https://doi.org/10.1103/PhysRevB.106.045302">https://doi.org/10.1103/PhysRevB.106.045302</a>.
  ieee: U. Dziom <i>et al.</i>, “Universal transparency and asymmetric spin splitting
    near the Dirac point in HgTe quantum wells,” <i>Physical Review B</i>, vol. 106,
    no. 4. American Physical Society, 2022.
  ista: Dziom U, Shuvaev A, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon
    ZD, Alpichshev Z, Pimenov A. 2022. Universal transparency and asymmetric spin
    splitting near the Dirac point in HgTe quantum wells. Physical Review B. 106(4),
    045302.
  mla: Dziom, Uladzislau, et al. “Universal Transparency and Asymmetric Spin Splitting
    near the Dirac Point in HgTe Quantum Wells.” <i>Physical Review B</i>, vol. 106,
    no. 4, 045302, American Physical Society, 2022, doi:<a href="https://doi.org/10.1103/PhysRevB.106.045302">10.1103/PhysRevB.106.045302</a>.
  short: U. Dziom, A. Shuvaev, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov,
    Z.D. Kvon, Z. Alpichshev, A. Pimenov, Physical Review B 106 (2022).
date_created: 2022-08-07T22:01:58Z
date_published: 2022-07-15T00:00:00Z
date_updated: 2026-07-02T09:51:59Z
day: '15'
ddc:
- '530'
department:
- _id: ZhAl
doi: 10.1103/PhysRevB.106.045302
external_id:
  isi:
  - '000834349200010'
file:
- access_level: open_access
  checksum: 115aff9e0cde2f806cb26953d7262791
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-08T06:58:22Z
  date_updated: 2022-08-08T06:58:22Z
  file_id: '11743'
  file_name: 2022_PhysRevB_Dziom.pdf
  file_size: 774455
  relation: main_file
  success: 1
file_date_updated: 2022-08-08T06:58:22Z
has_accepted_license: '1'
intvolume: '       106'
isi: 1
issue: '4'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Universal transparency and asymmetric spin splitting near the Dirac point in
  HgTe quantum wells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 106
year: '2022'
...
---
_id: '12186'
abstract:
- lang: eng
  text: Activation of cell-surface and intracellular receptor-mediated immunity results
    in rapid transcriptional reprogramming that underpins disease resistance. However,
    the mechanisms by which co-activation of both immune systems lead to transcriptional
    changes are not clear. Here, we combine RNA-seq and ATAC-seq to define changes
    in gene expression and chromatin accessibility. Activation of cell-surface or
    intracellular receptor-mediated immunity, or both, increases chromatin accessibility
    at induced defence genes. Analysis of ATAC-seq and RNA-seq data combined with
    publicly available information on transcription factor DNA-binding motifs enabled
    comparison of individual gene regulatory networks activated by cell-surface or
    intracellular receptor-mediated immunity, or by both. These results and analyses
    reveal overlapping and conserved transcriptional regulatory mechanisms between
    the two immune systems.
acknowledgement: "We thank the Gatsby Foundation (UK) for funding to the JDGJ laboratory.
  PD acknowledges support from the European Union’s Horizon 2020 Research and Innovation
  Program under Marie Skłodowska Curie Actions (grant agreement: 656243) and a Future
  Leader Fellowship from the Biotechnology and Biological Sciences Research Council
  (BBSRC) (grant agreement: BB/R012172/1). TS, RKS, DM, and JDGJ were supported by
  the Gatsby Foundation funding to the\r\nSainsbury Laboratory. NMP and KV were supported
  by a BOF grant from Ghent University (grant agreement: BOF24Y2019001901). WG and
  RZ were supported by the Scottish Government Rural and Environment Science and Analytical
  Services division (RESAS), and RZ also acknowledges the support from a BBSRC Bioinformatics
  and Biological Resources Fund (grant agreement: BB/S020160/1).BPMN was supported
  by the Norwich Research Park (NRP) Biosciences Doctoral Training Partnership (DTP)
  funded by the BBSRC (grant agreement: BB/M011216/1). SH and XF were supported by
  a BBSRC Responsive Mode grant (grant agreement: BB/S009620/1) and a European Research
  Council Starting grant ‘SexMeth’ (grant agreement: 804981). CL was supported by
  Deutsche Forschungsgemeinschaft (grant agreement: LI 2862/4). "
article_processing_charge: No
article_type: original
author:
- first_name: Pingtao
  full_name: Ding, Pingtao
  last_name: Ding
- first_name: Toshiyuki
  full_name: Sakai, Toshiyuki
  last_name: Sakai
- first_name: Ram
  full_name: Krishna Shrestha, Ram
  last_name: Krishna Shrestha
- first_name: Nicolas
  full_name: Manosalva Perez, Nicolas
  last_name: Manosalva Perez
- first_name: Wenbin
  full_name: Guo, Wenbin
  last_name: Guo
- first_name: Bruno Pok Man
  full_name: Ngou, Bruno Pok Man
  last_name: Ngou
- first_name: Shengbo
  full_name: He, Shengbo
  last_name: He
- first_name: Chang
  full_name: Liu, Chang
  last_name: Liu
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
- first_name: Runxuan
  full_name: Zhang, Runxuan
  last_name: Zhang
- first_name: Klaas
  full_name: Vandepoele, Klaas
  last_name: Vandepoele
- first_name: Dan
  full_name: MacLean, Dan
  last_name: MacLean
- first_name: Jonathan D G
  full_name: Jones, Jonathan D G
  last_name: Jones
citation:
  ama: Ding P, Sakai T, Krishna Shrestha R, et al. Chromatin accessibility landscapes
    activated by cell-surface and intracellular immune receptors. <i>Journal of Experimental
    Botany</i>. 2021;72(22):7927-7941. doi:<a href="https://doi.org/10.1093/jxb/erab373">10.1093/jxb/erab373</a>
  apa: Ding, P., Sakai, T., Krishna Shrestha, R., Manosalva Perez, N., Guo, W., Ngou,
    B. P. M., … Jones, J. D. G. (2021). Chromatin accessibility landscapes activated
    by cell-surface and intracellular immune receptors. <i>Journal of Experimental
    Botany</i>. Oxford University Press. <a href="https://doi.org/10.1093/jxb/erab373">https://doi.org/10.1093/jxb/erab373</a>
  chicago: Ding, Pingtao, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolas Manosalva
    Perez, Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, et al. “Chromatin Accessibility
    Landscapes Activated by Cell-Surface and Intracellular Immune Receptors.” <i>Journal
    of Experimental Botany</i>. Oxford University Press, 2021. <a href="https://doi.org/10.1093/jxb/erab373">https://doi.org/10.1093/jxb/erab373</a>.
  ieee: P. Ding <i>et al.</i>, “Chromatin accessibility landscapes activated by cell-surface
    and intracellular immune receptors,” <i>Journal of Experimental Botany</i>, vol.
    72, no. 22. Oxford University Press, pp. 7927–7941, 2021.
  ista: Ding P, Sakai T, Krishna Shrestha R, Manosalva Perez N, Guo W, Ngou BPM, He
    S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG. 2021. Chromatin
    accessibility landscapes activated by cell-surface and intracellular immune receptors.
    Journal of Experimental Botany. 72(22), 7927–7941.
  mla: Ding, Pingtao, et al. “Chromatin Accessibility Landscapes Activated by Cell-Surface
    and Intracellular Immune Receptors.” <i>Journal of Experimental Botany</i>, vol.
    72, no. 22, Oxford University Press, 2021, pp. 7927–41, doi:<a href="https://doi.org/10.1093/jxb/erab373">10.1093/jxb/erab373</a>.
  short: P. Ding, T. Sakai, R. Krishna Shrestha, N. Manosalva Perez, W. Guo, B.P.M.
    Ngou, S. He, C. Liu, X. Feng, R. Zhang, K. Vandepoele, D. MacLean, J.D.G. Jones,
    Journal of Experimental Botany 72 (2021) 7927–7941.
date_created: 2023-01-16T09:14:35Z
date_published: 2021-08-13T00:00:00Z
date_updated: 2023-05-08T11:01:18Z
day: '13'
department:
- _id: XiFe
doi: 10.1093/jxb/erab373
extern: '1'
external_id:
  pmid:
  - '34387350'
intvolume: '        72'
issue: '22'
keyword:
- Plant Science
- Physiology
language:
- iso: eng
month: '08'
oa_version: None
page: 7927-7941
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
  issn:
  - 0022-0957
  - 1460-2431
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Chromatin accessibility landscapes activated by cell-surface and intracellular
  immune receptors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 72
year: '2021'
...
---
_id: '12187'
abstract:
- lang: eng
  text: Genomes of germ cells present an existential vulnerability to organisms because
    germ cell mutations will propagate to future generations. Transposable elements
    are one source of such mutations. In the small flowering plant Arabidopsis, Long
    et al. found that genome methylation in the male germline is directed by small
    interfering RNAs (siRNAs) imperfectly transcribed from transposons (see the Perspective
    by Mosher). These germline siRNAs silence germline transposons and establish inherited
    methylation patterns in sperm, thus maintaining the integrity of the plant genome
    across generations.
acknowledgement: 'We thank the John Innes Centre Bioimaging Facility (S. Lopez, E.
  Wegel, and K. Findlay) for their assistance with microscopy and the Norwich BioScience
  Institute Partnership Computing Infrastructure for Science Group for high-performance
  computing resources. Funding: This work was funded by a European Research Council
  Starting Grant (“SexMeth” 804981; J.L., J.W., and X.F.), a Sainsbury Charitable
  Foundation studentship (J.W.), two Biotechnology and Biological Sciences Research
  Council (BBSRC) grants (BBS0096201 and BBP0135111; W.S., M.V., and X.F.), two John
  Innes Foundation studentships (B.A. and S.D.), and a BBSRC David Phillips Fellowship
  (BBL0250431; H.G. and X.F.). Author contributions: J.L., J.W., and X.F. designed
  the study and wrote the manuscript; J.L., W.S., B.A., H.G., and S.D. performed the
  experiments; and J.L., J.W., B.A., H.G., S.D., M.V., and X.F. analyzed the data.
  Competing interests: The authors declare no competing interests. Data and material
  availability: All sequencing data have been deposited in the Gene Expression Omnibus
  (GEO) under accession no. GSE161625. Accession nos. of published datasets used in
  this study are listed in table S6. Published software used in this study include
  Bowtie v1.2.2 (https://doi.org/10.1002/0471250953.bi1107s32), Bismark v0.22.2 (https://doi.org/10.1093/bioinformatics/btr167),
  Kallisto v0.43.0 (https://doi.org/10.1038/nbt0816-888d), Shortstack v3.8.5 (https://doi.org/10.1534/g3.116.030452),
  and Cutadapt v1.15 (https://doi.org/10.1089/cmb.2017.0096). TrimGalore v0.4.1 and
  MarkDuplicates v1.141 are available from https://github.com/FelixKrueger/TrimGalore
  and https://github.com/broadinstitute/picard, respectively. All remaining data are
  in the main paper or the supplementary materials.'
article_processing_charge: No
article_type: original
author:
- first_name: Jincheng
  full_name: Long, Jincheng
  last_name: Long
- first_name: James
  full_name: Walker, James
  last_name: Walker
- first_name: Wenjing
  full_name: She, Wenjing
  last_name: She
- first_name: Billy
  full_name: Aldridge, Billy
  last_name: Aldridge
- first_name: Hongbo
  full_name: Gao, Hongbo
  last_name: Gao
- first_name: Samuel
  full_name: Deans, Samuel
  last_name: Deans
- first_name: Martin
  full_name: Vickers, Martin
  last_name: Vickers
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
citation:
  ama: Long J, Walker J, She W, et al. Nurse cell--derived small RNAs define paternal
    epigenetic inheritance in Arabidopsis. <i>Science</i>. 2021;373(6550). doi:<a
    href="https://doi.org/10.1126/science.abh0556">10.1126/science.abh0556</a>
  apa: Long, J., Walker, J., She, W., Aldridge, B., Gao, H., Deans, S., … Feng, X.
    (2021). Nurse cell--derived small RNAs define paternal epigenetic inheritance
    in Arabidopsis. <i>Science</i>. American Association for the Advancement of Science
    (AAAS). <a href="https://doi.org/10.1126/science.abh0556">https://doi.org/10.1126/science.abh0556</a>
  chicago: Long, Jincheng, James Walker, Wenjing She, Billy Aldridge, Hongbo Gao,
    Samuel Deans, Martin Vickers, and Xiaoqi Feng. “Nurse Cell--Derived Small RNAs
    Define Paternal Epigenetic Inheritance in Arabidopsis.” <i>Science</i>. American
    Association for the Advancement of Science (AAAS), 2021. <a href="https://doi.org/10.1126/science.abh0556">https://doi.org/10.1126/science.abh0556</a>.
  ieee: J. Long <i>et al.</i>, “Nurse cell--derived small RNAs define paternal epigenetic
    inheritance in Arabidopsis,” <i>Science</i>, vol. 373, no. 6550. American Association
    for the Advancement of Science (AAAS), 2021.
  ista: Long J, Walker J, She W, Aldridge B, Gao H, Deans S, Vickers M, Feng X. 2021.
    Nurse cell--derived small RNAs define paternal epigenetic inheritance in Arabidopsis.
    Science. 373(6550).
  mla: Long, Jincheng, et al. “Nurse Cell--Derived Small RNAs Define Paternal Epigenetic
    Inheritance in Arabidopsis.” <i>Science</i>, vol. 373, no. 6550, American Association
    for the Advancement of Science (AAAS), 2021, doi:<a href="https://doi.org/10.1126/science.abh0556">10.1126/science.abh0556</a>.
  short: J. Long, J. Walker, W. She, B. Aldridge, H. Gao, S. Deans, M. Vickers, X.
    Feng, Science 373 (2021).
date_created: 2023-01-16T09:15:14Z
date_published: 2021-07-02T00:00:00Z
date_updated: 2023-05-08T10:56:39Z
day: '02'
department:
- _id: XiFe
doi: 10.1126/science.abh0556
extern: '1'
external_id:
  pmid:
  - '34210850'
intvolume: '       373'
issue: '6550'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '07'
oa_version: None
pmid: 1
publication: Science
publication_identifier:
  issn:
  - 0036-8075
  - 1095-9203
publication_status: published
publisher: American Association for the Advancement of Science (AAAS)
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nurse cell--derived small RNAs define paternal epigenetic inheritance in Arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 373
year: '2021'
...
---
_id: '12308'
abstract:
- lang: eng
  text: Let P and Q be two points on an elliptic curve defined over a number field
    K. For α∈End(E), define Bα to be the OK-integral ideal generated by the denominator
    of x(α(P)+Q). Let O be a subring of End(E), that is a Dedekind domain. We will
    study the sequence {Bα}α∈O. We will show that, for all but finitely many α∈O,
    the ideal Bα has a primitive divisor when P is a non-torsion point and there exist
    two endomorphisms g≠0 and f so that f(P)=g(Q). This is a generalization of previous
    results on elliptic divisibility sequences.
article_number: '37'
article_processing_charge: No
article_type: original
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. Primitive divisors of sequences associated to elliptic curves with
    complex multiplication. <i>Research in Number Theory</i>. 2021;7(2). doi:<a href="https://doi.org/10.1007/s40993-021-00267-9">10.1007/s40993-021-00267-9</a>
  apa: Verzobio, M. (2021). Primitive divisors of sequences associated to elliptic
    curves with complex multiplication. <i>Research in Number Theory</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s40993-021-00267-9">https://doi.org/10.1007/s40993-021-00267-9</a>
  chicago: Verzobio, Matteo. “Primitive Divisors of Sequences Associated to Elliptic
    Curves with Complex Multiplication.” <i>Research in Number Theory</i>. Springer
    Nature, 2021. <a href="https://doi.org/10.1007/s40993-021-00267-9">https://doi.org/10.1007/s40993-021-00267-9</a>.
  ieee: M. Verzobio, “Primitive divisors of sequences associated to elliptic curves
    with complex multiplication,” <i>Research in Number Theory</i>, vol. 7, no. 2.
    Springer Nature, 2021.
  ista: Verzobio M. 2021. Primitive divisors of sequences associated to elliptic curves
    with complex multiplication. Research in Number Theory. 7(2), 37.
  mla: Verzobio, Matteo. “Primitive Divisors of Sequences Associated to Elliptic Curves
    with Complex Multiplication.” <i>Research in Number Theory</i>, vol. 7, no. 2,
    37, Springer Nature, 2021, doi:<a href="https://doi.org/10.1007/s40993-021-00267-9">10.1007/s40993-021-00267-9</a>.
  short: M. Verzobio, Research in Number Theory 7 (2021).
date_created: 2023-01-16T11:44:39Z
date_published: 2021-05-20T00:00:00Z
date_updated: 2023-05-08T12:00:17Z
day: '20'
doi: 10.1007/s40993-021-00267-9
extern: '1'
intvolume: '         7'
issue: '2'
keyword:
- Algebra and Number Theory
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s40993-021-00267-9
month: '05'
oa: 1
oa_version: Published Version
publication: Research in Number Theory
publication_identifier:
  issn:
  - 2522-0160
  - 2363-9555
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Primitive divisors of sequences associated to elliptic curves with complex
  multiplication
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2021'
...
---
_id: '12309'
abstract:
- lang: eng
  text: Take a rational elliptic curve defined by the equation y2=x3+ax in minimal
    form and consider the sequence Bn of the denominators of the abscissas of the
    iterate of a non-torsion point. We show that B5m has a primitive divisor for every
    m. Then, we show how to generalize this method to the terms of the form Bmp with
    p a prime congruent to 1 modulo 4.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. Primitive divisors of elliptic divisibility sequences for elliptic
    curves with j=1728. <i>Acta Arithmetica</i>. 2021;198(2):129-168. doi:<a href="https://doi.org/10.4064/aa191016-30-7">10.4064/aa191016-30-7</a>
  apa: Verzobio, M. (2021). Primitive divisors of elliptic divisibility sequences
    for elliptic curves with j=1728. <i>Acta Arithmetica</i>. Institute of Mathematics,
    Polish Academy of Sciences. <a href="https://doi.org/10.4064/aa191016-30-7">https://doi.org/10.4064/aa191016-30-7</a>
  chicago: Verzobio, Matteo. “Primitive Divisors of Elliptic Divisibility Sequences
    for Elliptic Curves with J=1728.” <i>Acta Arithmetica</i>. Institute of Mathematics,
    Polish Academy of Sciences, 2021. <a href="https://doi.org/10.4064/aa191016-30-7">https://doi.org/10.4064/aa191016-30-7</a>.
  ieee: M. Verzobio, “Primitive divisors of elliptic divisibility sequences for elliptic
    curves with j=1728,” <i>Acta Arithmetica</i>, vol. 198, no. 2. Institute of Mathematics,
    Polish Academy of Sciences, pp. 129–168, 2021.
  ista: Verzobio M. 2021. Primitive divisors of elliptic divisibility sequences for
    elliptic curves with j=1728. Acta Arithmetica. 198(2), 129–168.
  mla: Verzobio, Matteo. “Primitive Divisors of Elliptic Divisibility Sequences for
    Elliptic Curves with J=1728.” <i>Acta Arithmetica</i>, vol. 198, no. 2, Institute
    of Mathematics, Polish Academy of Sciences, 2021, pp. 129–68, doi:<a href="https://doi.org/10.4064/aa191016-30-7">10.4064/aa191016-30-7</a>.
  short: M. Verzobio, Acta Arithmetica 198 (2021) 129–168.
date_created: 2023-01-16T11:44:54Z
date_published: 2021-01-04T00:00:00Z
date_updated: 2023-05-08T11:58:14Z
day: '04'
doi: 10.4064/aa191016-30-7
extern: '1'
external_id:
  arxiv:
  - '2001.09634'
intvolume: '       198'
issue: '2'
keyword:
- Algebra and Number Theory
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2001.09634
month: '01'
oa: 1
oa_version: Preprint
page: 129-168
publication: Acta Arithmetica
publication_identifier:
  issn:
  - 0065-1036
  - 1730-6264
publication_status: published
publisher: Institute of Mathematics, Polish Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Primitive divisors of elliptic divisibility sequences for elliptic curves with
  j=1728
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 198
year: '2021'
...
---
_id: '12314'
abstract:
- lang: eng
  text: "In literature, there are two different definitions of elliptic divisibility\r\nsequences.
    The first one says that a sequence of integers $\\{h_n\\}_{n\\geq 0}$\r\nis an
    elliptic divisibility sequence if it verifies the recurrence relation\r\n$h_{m+n}h_{m-n}h_{r}^2=h_{m+r}h_{m-r}h_{n}^2-h_{n+r}h_{n-r}h_{m}^2$
    for every\r\nnatural number $m\\geq n\\geq r$. The second definition says that
    a sequence of\r\nintegers $\\{\\beta_n\\}_{n\\geq 0}$ is an elliptic divisibility
    sequence if it is\r\nthe sequence of the square roots (chosen with an appropriate
    sign) of the\r\ndenominators of the abscissas of the iterates of a point on a
    rational elliptic\r\ncurve. It is well-known that the two sequences are not equivalent.
    Hence, given\r\na sequence of the denominators $\\{\\beta_n\\}_{n\\geq 0}$, in
    general does not\r\nhold\r\n$\\beta_{m+n}\\beta_{m-n}\\beta_{r}^2=\\beta_{m+r}\\beta_{m-r}\\beta_{n}^2-\\beta_{n+r}\\beta_{n-r}\\beta_{m}^2$\r\nfor
    $m\\geq n\\geq r$. We will prove that the recurrence relation above holds for\r\n$\\{\\beta_n\\}_{n\\geq
    0}$ under some conditions on the indexes $m$, $n$, and $r$."
article_number: '2102.07573'
article_processing_charge: No
arxiv: 1
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. A recurrence relation for elliptic divisibility sequences. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.2102.07573">10.48550/arXiv.2102.07573</a>
  apa: Verzobio, M. (n.d.). A recurrence relation for elliptic divisibility sequences.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2102.07573">https://doi.org/10.48550/arXiv.2102.07573</a>
  chicago: Verzobio, Matteo. “A Recurrence Relation for Elliptic Divisibility Sequences.”
    <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2102.07573">https://doi.org/10.48550/arXiv.2102.07573</a>.
  ieee: M. Verzobio, “A recurrence relation for elliptic divisibility sequences,”
    <i>arXiv</i>. .
  ista: Verzobio M. A recurrence relation for elliptic divisibility sequences. arXiv,
    2102.07573.
  mla: Verzobio, Matteo. “A Recurrence Relation for Elliptic Divisibility Sequences.”
    <i>ArXiv</i>, 2102.07573, doi:<a href="https://doi.org/10.48550/arXiv.2102.07573">10.48550/arXiv.2102.07573</a>.
  short: M. Verzobio, ArXiv (n.d.).
date_created: 2023-01-16T11:46:36Z
date_published: 2021-02-15T00:00:00Z
date_updated: 2023-02-21T10:22:57Z
day: '15'
doi: 10.48550/arXiv.2102.07573
extern: '1'
external_id:
  arxiv:
  - '2102.07573'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2102.07573'
month: '02'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: A recurrence relation for elliptic divisibility sequences
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '12583'
abstract:
- lang: eng
  text: Peruvian glaciers are important contributors to dry season runoff for agriculture
    and hydropower, but they are at risk of disappearing due to climate change. We
    applied a physically based, energy balance melt model at five on-glacier sites
    within the Peruvian Cordilleras Blanca and Vilcanota. Net shortwave radiation
    dominates the energy balance, and despite this flux being higher in the dry season,
    melt rates are lower due to losses from net longwave radiation and the latent
    heat flux. The sensible heat flux is a relatively small contributor to melt energy.
    At three of the sites the wet season snowpack was discontinuous, forming and melting
    within a daily to weekly timescale, and resulting in highly variable melt rates
    closely related to precipitation dynamics. Cold air temperatures due to a strong
    La Niña year at Shallap Glacier (Cordillera Blanca) resulted in a continuous wet
    season snowpack, significantly reducing wet season ablation. Sublimation was most
    important at the highest site in the accumulation zone of the Quelccaya Ice Cap
    (Cordillera Vilcanota), accounting for 81% of ablation, compared to 2%–4% for
    the other sites. Air temperature and precipitation inputs were perturbed to investigate
    the climate sensitivity of the five glaciers. At the lower sites warmer air temperatures
    resulted in a switch from snowfall to rain, so that ablation was increased via
    the decrease in albedo and increase in net shortwave radiation. At the top of
    Quelccaya Ice Cap warming caused melting to replace sublimation so that ablation
    increased nonlinearly with air temperature.
article_number: e2021JD034911
article_processing_charge: No
article_type: original
author:
- first_name: Catriona L.
  full_name: Fyffe, Catriona L.
  last_name: Fyffe
- first_name: Emily
  full_name: Potter, Emily
  last_name: Potter
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Andrew
  full_name: Orr, Andrew
  last_name: Orr
- first_name: Simone
  full_name: Fatichi, Simone
  last_name: Fatichi
- first_name: Edwin
  full_name: Loarte, Edwin
  last_name: Loarte
- first_name: Katy
  full_name: Medina, Katy
  last_name: Medina
- first_name: Robert Å.
  full_name: Hellström, Robert Å.
  last_name: Hellström
- first_name: Maud
  full_name: Bernat, Maud
  last_name: Bernat
- first_name: Caroline
  full_name: Aubry‐Wake, Caroline
  last_name: Aubry‐Wake
- first_name: Wolfgang
  full_name: Gurgiser, Wolfgang
  last_name: Gurgiser
- first_name: L. Baker
  full_name: Perry, L. Baker
  last_name: Perry
- first_name: Wilson
  full_name: Suarez, Wilson
  last_name: Suarez
- first_name: Duncan J.
  full_name: Quincey, Duncan J.
  last_name: Quincey
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
citation:
  ama: 'Fyffe CL, Potter E, Fugger S, et al. The energy and mass balance of Peruvian
    Glaciers. <i>Journal of Geophysical Research: Atmospheres</i>. 2021;126(23). doi:<a
    href="https://doi.org/10.1029/2021jd034911">10.1029/2021jd034911</a>'
  apa: 'Fyffe, C. L., Potter, E., Fugger, S., Orr, A., Fatichi, S., Loarte, E., …
    Pellicciotti, F. (2021). The energy and mass balance of Peruvian Glaciers. <i>Journal
    of Geophysical Research: Atmospheres</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2021jd034911">https://doi.org/10.1029/2021jd034911</a>'
  chicago: 'Fyffe, Catriona L., Emily Potter, Stefan Fugger, Andrew Orr, Simone Fatichi,
    Edwin Loarte, Katy Medina, et al. “The Energy and Mass Balance of Peruvian Glaciers.”
    <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union,
    2021. <a href="https://doi.org/10.1029/2021jd034911">https://doi.org/10.1029/2021jd034911</a>.'
  ieee: 'C. L. Fyffe <i>et al.</i>, “The energy and mass balance of Peruvian Glaciers,”
    <i>Journal of Geophysical Research: Atmospheres</i>, vol. 126, no. 23. American
    Geophysical Union, 2021.'
  ista: 'Fyffe CL, Potter E, Fugger S, Orr A, Fatichi S, Loarte E, Medina K, Hellström
    RÅ, Bernat M, Aubry‐Wake C, Gurgiser W, Perry LB, Suarez W, Quincey DJ, Pellicciotti
    F. 2021. The energy and mass balance of Peruvian Glaciers. Journal of Geophysical
    Research: Atmospheres. 126(23), e2021JD034911.'
  mla: 'Fyffe, Catriona L., et al. “The Energy and Mass Balance of Peruvian Glaciers.”
    <i>Journal of Geophysical Research: Atmospheres</i>, vol. 126, no. 23, e2021JD034911,
    American Geophysical Union, 2021, doi:<a href="https://doi.org/10.1029/2021jd034911">10.1029/2021jd034911</a>.'
  short: 'C.L. Fyffe, E. Potter, S. Fugger, A. Orr, S. Fatichi, E. Loarte, K. Medina,
    R.Å. Hellström, M. Bernat, C. Aubry‐Wake, W. Gurgiser, L.B. Perry, W. Suarez,
    D.J. Quincey, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 126
    (2021).'
date_created: 2023-02-20T08:10:43Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2023-02-28T13:31:08Z
day: '16'
doi: 10.1029/2021jd034911
extern: '1'
intvolume: '       126'
issue: '23'
keyword:
- Space and Planetary Science
- Earth and Planetary Sciences (miscellaneous)
- Atmospheric Science
- Geophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1029/2021JD034911
month: '12'
oa: 1
oa_version: Published Version
publication: 'Journal of Geophysical Research: Atmospheres'
publication_identifier:
  eissn:
  - 2169-8996
  issn:
  - 2169-897X
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: The energy and mass balance of Peruvian Glaciers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 126
year: '2021'
...
---
_id: '12584'
abstract:
- lang: eng
  text: This project explored the integrated use of satellite, ground observations
    and hydrological distributed models to support water resources assessment and
    monitoring in High Mountain Asia (HMA). Hydrological data products were generated
    taking advantage of the synergies of European and Chinese data assets and space-borne
    observation systems. Energy-budget-based glacier mass balance and hydrological
    models driven by satellite observations were developed. These models can be applied
    to describe glacier-melt contribution to river flow. Satellite hydrological data
    products were used for forcing, calibration, validation and data assimilation
    in distributed river basin models. A pilot study was carried out on the Red River
    basin. Multiple hydrological data products were generated using the data collected
    by Chinese satellites. A new Evapo-Transpiration (ET) dataset from 2000 to 2018
    was generated, including plant transpiration, soil evaporation, rainfall interception
    loss, snow/ice sublimation and open water evaporation. Higher resolution data
    were used to characterize glaciers and their response to environmental forcing.
    These studies focused on the Parlung Zangbo Basin, where glacier facies were mapped
    with GaoFeng (GF), Sentinal-2/Multi-Spectral Imager (S2/MSI) and Landsat8/Operational
    Land Imager (L8/OLI) data. The geodetic mass balance was estimated between 2000
    and 2017 with Zi-Yuan (ZY)-3 Stereo Images and the SRTM DEM. Surface velocity
    was studied with Landsat5/Thematic Mapper (L5/TM), L8/OLI and S2/MSI data over
    the period 2013–2019. An updated method was developed to improve the retrieval
    of glacier albedo by correcting glacier reflectance for anisotropy, and a new
    dataset on glacier albedo was generated for the period 2001–2020. A detailed glacier
    energy and mass balance model was developed with the support of field experiments
    at the Parlung No. 4 Glacier and the 24 K Glacier, both in the Tibetan Plateau.
    Besides meteorological measurements, the field experiments included glaciological
    and hydrological measurements. The energy balance model was formulated in terms
    of enthalpy for easier treatment of water phase transitions. The model was applied
    to assess the spatial variability in glacier melt. In the Parlung No. 4 Glacier,
    the accumulated glacier melt was between 1.5 and 2.5 m w.e. in the accumulation
    zone and between 4.5 and 6.0 m w.e. in the ablation zone, reaching 6.5 m w.e.
    at the terminus. The seasonality in the glacier mass balance was observed by combining
    intensive field campaigns with continuous automatic observations. The linkage
    of the glacier and snowpack mass balance with water resources in a river basin
    was analyzed in the Chiese (Italy) and Heihe (China) basins by developing and
    applying integrated hydrological models using satellite retrievals in multiple
    ways. The model FEST-WEB was calibrated using retrievals of Land Surface Temperature
    (LST) to map soil hydrological properties. A watershed model was developed by
    coupling ecohydrological and socioeconomic systems. Integrated modeling is supported
    by an updated and parallelized data assimilation system. The latter exploits retrievals
    of brightness temperature (Advanced Microwave Scanning Radiometer, AMSR), LST
    (Moderate Resolution Imaging Spectroradiometer, MODIS), precipitation (Tropical
    Rainfall Measuring Mission (TRMM) and FengYun (FY)-2D) and in-situ measurements.
    In the case study on the Red River Basin, a new algorithm has been applied to
    disaggregate the SMOS (Soil Moisture and Ocean Salinity) soil moisture retrievals
    by making use of the correlation between evaporative fraction and soil moisture.
article_number: '5122'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Massimo
  full_name: Menenti, Massimo
  last_name: Menenti
- first_name: Xin
  full_name: Li, Xin
  last_name: Li
- first_name: Li
  full_name: Jia, Li
  last_name: Jia
- first_name: Kun
  full_name: Yang, Kun
  last_name: Yang
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
- first_name: Marco
  full_name: Mancini, Marco
  last_name: Mancini
- first_name: Jiancheng
  full_name: Shi, Jiancheng
  last_name: Shi
- first_name: Maria José
  full_name: Escorihuela, Maria José
  last_name: Escorihuela
- first_name: Chaolei
  full_name: Zheng, Chaolei
  last_name: Zheng
- first_name: Qiting
  full_name: Chen, Qiting
  last_name: Chen
- first_name: Jing
  full_name: Lu, Jing
  last_name: Lu
- first_name: Jie
  full_name: Zhou, Jie
  last_name: Zhou
- first_name: Guangcheng
  full_name: Hu, Guangcheng
  last_name: Hu
- first_name: Shaoting
  full_name: Ren, Shaoting
  last_name: Ren
- first_name: Jing
  full_name: Zhang, Jing
  last_name: Zhang
- first_name: Qinhuo
  full_name: Liu, Qinhuo
  last_name: Liu
- first_name: Yubao
  full_name: Qiu, Yubao
  last_name: Qiu
- first_name: Chunlin
  full_name: Huang, Chunlin
  last_name: Huang
- first_name: Ji
  full_name: Zhou, Ji
  last_name: Zhou
- first_name: Xujun
  full_name: Han, Xujun
  last_name: Han
- first_name: Xiaoduo
  full_name: Pan, Xiaoduo
  last_name: Pan
- first_name: Hongyi
  full_name: Li, Hongyi
  last_name: Li
- first_name: Yerong
  full_name: Wu, Yerong
  last_name: Wu
- first_name: Baohong
  full_name: Ding, Baohong
  last_name: Ding
- first_name: Wei
  full_name: Yang, Wei
  last_name: Yang
- first_name: Pascal
  full_name: Buri, Pascal
  last_name: Buri
- first_name: Michael J.
  full_name: McCarthy, Michael J.
  last_name: McCarthy
- first_name: Evan S.
  full_name: Miles, Evan S.
  last_name: Miles
- first_name: Thomas E.
  full_name: Shaw, Thomas E.
  last_name: Shaw
- first_name: Chunfeng
  full_name: Ma, Chunfeng
  last_name: Ma
- first_name: Yanzhao
  full_name: Zhou, Yanzhao
  last_name: Zhou
- first_name: Chiara
  full_name: Corbari, Chiara
  last_name: Corbari
- first_name: Rui
  full_name: Li, Rui
  last_name: Li
- first_name: Tianjie
  full_name: Zhao, Tianjie
  last_name: Zhao
- first_name: Vivien
  full_name: Stefan, Vivien
  last_name: Stefan
- first_name: Qi
  full_name: Gao, Qi
  last_name: Gao
- first_name: Jingxiao
  full_name: Zhang, Jingxiao
  last_name: Zhang
- first_name: Qiuxia
  full_name: Xie, Qiuxia
  last_name: Xie
- first_name: Ning
  full_name: Wang, Ning
  last_name: Wang
- first_name: Yibo
  full_name: Sun, Yibo
  last_name: Sun
- first_name: Xinyu
  full_name: Mo, Xinyu
  last_name: Mo
- first_name: Junru
  full_name: Jia, Junru
  last_name: Jia
- first_name: Achille Pierre
  full_name: Jouberton, Achille Pierre
  last_name: Jouberton
- first_name: Marin
  full_name: Kneib, Marin
  last_name: Kneib
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Nicola
  full_name: Paciolla, Nicola
  last_name: Paciolla
- first_name: Giovanni
  full_name: Paolini, Giovanni
  last_name: Paolini
citation:
  ama: Menenti M, Li X, Jia L, et al. Multi-source hydrological data products to monitor
    High Asian river basins and regional water security. <i>Remote Sensing</i>. 2021;13(24).
    doi:<a href="https://doi.org/10.3390/rs13245122">10.3390/rs13245122</a>
  apa: Menenti, M., Li, X., Jia, L., Yang, K., Pellicciotti, F., Mancini, M., … Paolini,
    G. (2021). Multi-source hydrological data products to monitor High Asian river
    basins and regional water security. <i>Remote Sensing</i>. MDPI. <a href="https://doi.org/10.3390/rs13245122">https://doi.org/10.3390/rs13245122</a>
  chicago: Menenti, Massimo, Xin Li, Li Jia, Kun Yang, Francesca Pellicciotti, Marco
    Mancini, Jiancheng Shi, et al. “Multi-Source Hydrological Data Products to Monitor
    High Asian River Basins and Regional Water Security.” <i>Remote Sensing</i>. MDPI,
    2021. <a href="https://doi.org/10.3390/rs13245122">https://doi.org/10.3390/rs13245122</a>.
  ieee: M. Menenti <i>et al.</i>, “Multi-source hydrological data products to monitor
    High Asian river basins and regional water security,” <i>Remote Sensing</i>, vol.
    13, no. 24. MDPI, 2021.
  ista: Menenti M, Li X, Jia L, Yang K, Pellicciotti F, Mancini M, Shi J, Escorihuela
    MJ, Zheng C, Chen Q, Lu J, Zhou J, Hu G, Ren S, Zhang J, Liu Q, Qiu Y, Huang C,
    Zhou J, Han X, Pan X, Li H, Wu Y, Ding B, Yang W, Buri P, McCarthy MJ, Miles ES,
    Shaw TE, Ma C, Zhou Y, Corbari C, Li R, Zhao T, Stefan V, Gao Q, Zhang J, Xie
    Q, Wang N, Sun Y, Mo X, Jia J, Jouberton AP, Kneib M, Fugger S, Paciolla N, Paolini
    G. 2021. Multi-source hydrological data products to monitor High Asian river basins
    and regional water security. Remote Sensing. 13(24), 5122.
  mla: Menenti, Massimo, et al. “Multi-Source Hydrological Data Products to Monitor
    High Asian River Basins and Regional Water Security.” <i>Remote Sensing</i>, vol.
    13, no. 24, 5122, MDPI, 2021, doi:<a href="https://doi.org/10.3390/rs13245122">10.3390/rs13245122</a>.
  short: M. Menenti, X. Li, L. Jia, K. Yang, F. Pellicciotti, M. Mancini, J. Shi,
    M.J. Escorihuela, C. Zheng, Q. Chen, J. Lu, J. Zhou, G. Hu, S. Ren, J. Zhang,
    Q. Liu, Y. Qiu, C. Huang, J. Zhou, X. Han, X. Pan, H. Li, Y. Wu, B. Ding, W. Yang,
    P. Buri, M.J. McCarthy, E.S. Miles, T.E. Shaw, C. Ma, Y. Zhou, C. Corbari, R.
    Li, T. Zhao, V. Stefan, Q. Gao, J. Zhang, Q. Xie, N. Wang, Y. Sun, X. Mo, J. Jia,
    A.P. Jouberton, M. Kneib, S. Fugger, N. Paciolla, G. Paolini, Remote Sensing 13
    (2021).
date_created: 2023-02-20T08:10:49Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2023-02-28T13:26:53Z
day: '16'
doi: 10.3390/rs13245122
extern: '1'
intvolume: '        13'
issue: '24'
keyword:
- General Earth and Planetary Sciences
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3390/rs13245122
month: '12'
oa: 1
oa_version: Published Version
publication: Remote Sensing
publication_identifier:
  issn:
  - 2072-4292
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multi-source hydrological data products to monitor High Asian river basins
  and regional water security
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2021'
...
---
_id: '12585'
abstract:
- lang: eng
  text: Glaciers in High Mountain Asia generate meltwater that supports the water
    needs of 250 million people, but current knowledge of annual accumulation and
    ablation is limited to sparse field measurements biased in location and glacier
    size. Here, we present altitudinally-resolved specific mass balances (surface,
    internal, and basal combined) for 5527 glaciers in High Mountain Asia for 2000–2016,
    derived by correcting observed glacier thinning patterns for mass redistribution
    due to ice flow. We find that 41% of glaciers accumulated mass over less than
    20% of their area, and only 60% ± 10% of regional annual ablation was compensated
    by accumulation. Even without 21st century warming, 21% ± 1% of ice volume will
    be lost by 2100 due to current climatic-geometric imbalance, representing a reduction
    in glacier ablation into rivers of 28% ± 1%. The ablation of glaciers in the Himalayas
    and Tien Shan was mostly unsustainable and ice volume in these regions will reduce
    by at least 30% by 2100. The most important and vulnerable glacier-fed river basins
    (Amu Darya, Indus, Syr Darya, Tarim Interior) were supplied with >50% sustainable
    glacier ablation but will see long-term reductions in ice mass and glacier meltwater
    supply regardless of the Karakoram Anomaly.
article_number: '2868'
article_processing_charge: No
article_type: original
author:
- first_name: Evan
  full_name: Miles, Evan
  last_name: Miles
- first_name: Michael
  full_name: McCarthy, Michael
  last_name: McCarthy
- first_name: Amaury
  full_name: Dehecq, Amaury
  last_name: Dehecq
- first_name: Marin
  full_name: Kneib, Marin
  last_name: Kneib
- first_name: Stefan
  full_name: Fugger, Stefan
  last_name: Fugger
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
citation:
  ama: Miles E, McCarthy M, Dehecq A, Kneib M, Fugger S, Pellicciotti F. Health and
    sustainability of glaciers in High Mountain Asia. <i>Nature Communications</i>.
    2021;12. doi:<a href="https://doi.org/10.1038/s41467-021-23073-4">10.1038/s41467-021-23073-4</a>
  apa: Miles, E., McCarthy, M., Dehecq, A., Kneib, M., Fugger, S., &#38; Pellicciotti,
    F. (2021). Health and sustainability of glaciers in High Mountain Asia. <i>Nature
    Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-021-23073-4">https://doi.org/10.1038/s41467-021-23073-4</a>
  chicago: Miles, Evan, Michael McCarthy, Amaury Dehecq, Marin Kneib, Stefan Fugger,
    and Francesca Pellicciotti. “Health and Sustainability of Glaciers in High Mountain
    Asia.” <i>Nature Communications</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41467-021-23073-4">https://doi.org/10.1038/s41467-021-23073-4</a>.
  ieee: E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, and F. Pellicciotti,
    “Health and sustainability of glaciers in High Mountain Asia,” <i>Nature Communications</i>,
    vol. 12. Springer Nature, 2021.
  ista: Miles E, McCarthy M, Dehecq A, Kneib M, Fugger S, Pellicciotti F. 2021. Health
    and sustainability of glaciers in High Mountain Asia. Nature Communications. 12,
    2868.
  mla: Miles, Evan, et al. “Health and Sustainability of Glaciers in High Mountain
    Asia.” <i>Nature Communications</i>, vol. 12, 2868, Springer Nature, 2021, doi:<a
    href="https://doi.org/10.1038/s41467-021-23073-4">10.1038/s41467-021-23073-4</a>.
  short: E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, F. Pellicciotti, Nature
    Communications 12 (2021).
date_created: 2023-02-20T08:11:29Z
date_published: 2021-05-17T00:00:00Z
date_updated: 2023-02-28T13:21:51Z
day: '17'
doi: 10.1038/s41467-021-23073-4
extern: '1'
intvolume: '        12'
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41467-021-23073-4
month: '05'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Health and sustainability of glaciers in High Mountain Asia
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2021'
...
---
_id: '12586'
abstract:
- lang: eng
  text: Ice cliffs are common on debris-covered glaciers and have relatively high
    melt rates due to their direct exposure to incoming radiation. Previous studies
    have shown that their number and relative area can change considerably from year
    to year, but this variability has not been explored, in part because available
    cliff observations are irregular. Here, we systematically mapped and tracked ice
    cliffs across four debris-covered glaciers in High Mountain Asia for every late
    ablation season from 2009 to 2019 using high-resolution multi-spectral satellite
    imagery. We then quantified the processes occurring at the feature scale to train
    a stochastic birth-death model to represent the cliff population dynamics. Our
    results show that while the cliff relative area can change by up to 20% from year
    to year, the natural long-term variability is constrained, thus defining a glacier-specific
    cliff carrying capacity. In a subsequent step, the inclusion of external drivers
    related to climate, glacier dynamics, and hydrology highlights the influence of
    these variables on the cliff population dynamics, which is usually not a direct
    one due to the complexity and interdependence of the processes taking place at
    the glacier surface. In some extreme cases (here, a glacier surge), these external
    drivers may lead to a reorganization of the cliffs at the glacier surface and
    a change in the natural variability. These results have implications for the melt
    of debris-covered glaciers, in addition to showing the high rate of changes at
    their surface and highlighting some of the links between cliff population and
    glacier state.
article_number: e2021JF006179
article_processing_charge: No
article_type: original
author:
- first_name: M.
  full_name: Kneib, M.
  last_name: Kneib
- first_name: E. S.
  full_name: Miles, E. S.
  last_name: Miles
- first_name: P.
  full_name: Buri, P.
  last_name: Buri
- first_name: P.
  full_name: Molnar, P.
  last_name: Molnar
- first_name: M.
  full_name: McCarthy, M.
  last_name: McCarthy
- first_name: S.
  full_name: Fugger, S.
  last_name: Fugger
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
citation:
  ama: 'Kneib M, Miles ES, Buri P, et al. Interannual dynamics of ice cliff populations
    on debris‐covered glaciers from remote sensing observations and stochastic modeling.
    <i>Journal of Geophysical Research: Earth Surface</i>. 2021;126(10). doi:<a href="https://doi.org/10.1029/2021jf006179">10.1029/2021jf006179</a>'
  apa: 'Kneib, M., Miles, E. S., Buri, P., Molnar, P., McCarthy, M., Fugger, S., &#38;
    Pellicciotti, F. (2021). Interannual dynamics of ice cliff populations on debris‐covered
    glaciers from remote sensing observations and stochastic modeling. <i>Journal
    of Geophysical Research: Earth Surface</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2021jf006179">https://doi.org/10.1029/2021jf006179</a>'
  chicago: 'Kneib, M., E. S. Miles, P. Buri, P. Molnar, M. McCarthy, S. Fugger, and
    Francesca Pellicciotti. “Interannual Dynamics of Ice Cliff Populations on Debris‐covered
    Glaciers from Remote Sensing Observations and Stochastic Modeling.” <i>Journal
    of Geophysical Research: Earth Surface</i>. American Geophysical Union, 2021.
    <a href="https://doi.org/10.1029/2021jf006179">https://doi.org/10.1029/2021jf006179</a>.'
  ieee: 'M. Kneib <i>et al.</i>, “Interannual dynamics of ice cliff populations on
    debris‐covered glaciers from remote sensing observations and stochastic modeling,”
    <i>Journal of Geophysical Research: Earth Surface</i>, vol. 126, no. 10. American
    Geophysical Union, 2021.'
  ista: 'Kneib M, Miles ES, Buri P, Molnar P, McCarthy M, Fugger S, Pellicciotti F.
    2021. Interannual dynamics of ice cliff populations on debris‐covered glaciers
    from remote sensing observations and stochastic modeling. Journal of Geophysical
    Research: Earth Surface. 126(10), e2021JF006179.'
  mla: 'Kneib, M., et al. “Interannual Dynamics of Ice Cliff Populations on Debris‐covered
    Glaciers from Remote Sensing Observations and Stochastic Modeling.” <i>Journal
    of Geophysical Research: Earth Surface</i>, vol. 126, no. 10, e2021JF006179, American
    Geophysical Union, 2021, doi:<a href="https://doi.org/10.1029/2021jf006179">10.1029/2021jf006179</a>.'
  short: 'M. Kneib, E.S. Miles, P. Buri, P. Molnar, M. McCarthy, S. Fugger, F. Pellicciotti,
    Journal of Geophysical Research: Earth Surface 126 (2021).'
date_created: 2023-02-20T08:11:36Z
date_published: 2021-10-01T00:00:00Z
date_updated: 2023-02-28T13:18:26Z
day: '01'
doi: 10.1029/2021jf006179
extern: '1'
intvolume: '       126'
issue: '10'
keyword:
- Earth-Surface Processes
- Geophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1029/2021JF006179
month: '10'
oa: 1
oa_version: Published Version
publication: 'Journal of Geophysical Research: Earth Surface'
publication_identifier:
  issn:
  - 2169-9003
  - 2169-9011
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: Interannual dynamics of ice cliff populations on debris‐covered glaciers from
  remote sensing observations and stochastic modeling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 126
year: '2021'
...
