[{"article_processing_charge":"No","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","day":"21","date_updated":"2024-01-08T10:05:30Z","type":"conference","oa_version":"None","doi":"10.1007/978-3-540-45187-7_9","language":[{"iso":"eng"}],"acknowledgement":"Supported in part by the AFOSR MURI grant F49620-00-1-0327, the DARPA grant F33615-C-98-3614, the MARCO grant 98-DT-660, -the ONR grant N00014-02-1-0671, the NSF grants CCR-9988172, CCR-0225610, and CCR-0234690, the NSF CAREER award CCR-0132780, and the MIUR grant MEFISTO.","page":"144 - 158","date_published":"2003-08-21T00:00:00Z","publication_identifier":{"isbn":["9783540407539"]},"scopus_import":"1","alternative_title":["LNCS"],"quality_controlled":"1","extern":"1","author":[{"first_name":"Luca","last_name":"De Alfaro","full_name":"De Alfaro, Luca"},{"first_name":"Marco","last_name":"Faella","full_name":"Faella, Marco"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","first_name":"Thomas A","last_name":"Henzinger"},{"last_name":"Majumdar","first_name":"Ritankar","full_name":"Majumdar, Ritankar"},{"last_name":"Stoelinga","first_name":"Mariëlle","full_name":"Stoelinga, Mariëlle"}],"citation":{"short":"L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, in:, Proceedings of the 14th International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2003, pp. 144–158.","chicago":"De Alfaro, Luca, Marco Faella, Thomas A Henzinger, Ritankar Majumdar, and Mariëlle Stoelinga. “The Element of Surprise in Timed Games.” In <i>Proceedings of the 14th International Conference on Concurrency Theory</i>, 2761:144–58. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2003. <a href=\"https://doi.org/10.1007/978-3-540-45187-7_9\">https://doi.org/10.1007/978-3-540-45187-7_9</a>.","ista":"De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. 2003. The element of surprise in timed games. Proceedings of the 14th International Conference on Concurrency Theory. CONCUR: Concurrency Theory, LNCS, vol. 2761, 144–158.","ama":"De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. The element of surprise in timed games. In: <i>Proceedings of the 14th International Conference on Concurrency Theory</i>. Vol 2761. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2003:144-158. doi:<a href=\"https://doi.org/10.1007/978-3-540-45187-7_9\">10.1007/978-3-540-45187-7_9</a>","ieee":"L. De Alfaro, M. Faella, T. A. Henzinger, R. Majumdar, and M. Stoelinga, “The element of surprise in timed games,” in <i>Proceedings of the 14th International Conference on Concurrency Theory</i>, Marseille, France, 2003, vol. 2761, pp. 144–158.","apa":"De Alfaro, L., Faella, M., Henzinger, T. A., Majumdar, R., &#38; Stoelinga, M. (2003). The element of surprise in timed games. In <i>Proceedings of the 14th International Conference on Concurrency Theory</i> (Vol. 2761, pp. 144–158). Marseille, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.1007/978-3-540-45187-7_9\">https://doi.org/10.1007/978-3-540-45187-7_9</a>","mla":"De Alfaro, Luca, et al. “The Element of Surprise in Timed Games.” <i>Proceedings of the 14th International Conference on Concurrency Theory</i>, vol. 2761, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2003, pp. 144–58, doi:<a href=\"https://doi.org/10.1007/978-3-540-45187-7_9\">10.1007/978-3-540-45187-7_9</a>."},"year":"2003","_id":"4630","publication":"Proceedings of the 14th International Conference on Concurrency Theory","title":"The element of surprise in timed games","publication_status":"published","abstract":[{"lang":"eng","text":"We consider concurrent two-person games played in real time, in which the players decide both which action to play, and when to play it. Such timed games differ from untimed games in two essential ways. First, players can take each other by surprise, because actions are played with delays that cannot be anticipated by the opponent. Second, a player should not be able to win the game by preventing time from diverging. We present a model of timed games that preserves the element of surprise and accounts for time divergence in a way that treats both players symmetrically and applies to all ω-regular winning conditions. We prove that the ability to take each other by surprise adds extra power to the players. For the case that the games are specified in the style of timed automata, we provide symbolic algorithms for their solution with respect to all ω-regular winning conditions. We also show that for these timed games, memory strategies are more powerful than memoryless strategies already in the case of reachability objectives."}],"volume":2761,"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","publist_id":"78","intvolume":"      2761","status":"public","date_created":"2018-12-11T12:09:51Z","month":"08","conference":{"end_date":"2003-09-05","name":"CONCUR: Concurrency Theory","location":"Marseille, France","start_date":"2003-09-03"}},{"language":[{"iso":"eng"}],"doi":"10.2166/nh.2002.0004","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","date_updated":"2023-02-20T08:30:15Z","type":"journal_article","day":"01","scopus_import":"1","publication_identifier":{"issn":["0029-1277"],"eissn":["2224-7955"]},"date_published":"2002-02-01T00:00:00Z","page":"47-74","publication":"Hydrology Research","title":"Modelling mountainous water systems between learning and speculating looking for challenges","_id":"12659","oa":1,"abstract":[{"text":"For many years considerable efforts have been put into investigating and modelling hydrological processes of mountainous catchments. On the one hand, the complexity and intrinsically high variability of the involved processes as well as insufficient knowledge of the underlying physical mechanisms still induce large uncertainties in understanding observed phenomena and predicting the behaviour of the system. On the other hand, the demand for models that are able to simulate mountainous water resource systems is increasing because of the needs related to both water exploitation and water conservation, which clearly call for an integrated vision and modelling of these systems.\r\nAccordingly, this paper moves from a brief survey of the most significant achievements in mountain hydrology to discuss what could be future challenging issues related to the broader spectrum of questions, which hydrologic modelling of mountainous river systems may face in the next decades. Firstly, reference is made to existing methodologies for modelling alpine water systems, focussing on some specific aspects that provide a basis for the discussion of the weaknesses and perspectives of present simulation tools. The future is thus discussed, delineating some of the research challenges that may foster a comprehensive and integrated vision of water related issues in mountainous regions.","lang":"eng"}],"publication_status":"published","main_file_link":[{"url":"https://doi.org/10.2166/nh.2002.0004","open_access":"1"}],"citation":{"ama":"Burlando P, Pellicciotti F, Strasser U. Modelling mountainous water systems between learning and speculating looking for challenges. <i>Hydrology Research</i>. 2002;33(1):47-74. doi:<a href=\"https://doi.org/10.2166/nh.2002.0004\">10.2166/nh.2002.0004</a>","ieee":"P. Burlando, F. Pellicciotti, and U. Strasser, “Modelling mountainous water systems between learning and speculating looking for challenges,” <i>Hydrology Research</i>, vol. 33, no. 1. IWA Publishing, pp. 47–74, 2002.","short":"P. Burlando, F. Pellicciotti, U. Strasser, Hydrology Research 33 (2002) 47–74.","chicago":"Burlando, Paolo, Francesca Pellicciotti, and Ulrich Strasser. “Modelling Mountainous Water Systems between Learning and Speculating Looking for Challenges.” <i>Hydrology Research</i>. IWA Publishing, 2002. <a href=\"https://doi.org/10.2166/nh.2002.0004\">https://doi.org/10.2166/nh.2002.0004</a>.","ista":"Burlando P, Pellicciotti F, Strasser U. 2002. Modelling mountainous water systems between learning and speculating looking for challenges. Hydrology Research. 33(1), 47–74.","apa":"Burlando, P., Pellicciotti, F., &#38; Strasser, U. (2002). Modelling mountainous water systems between learning and speculating looking for challenges. <i>Hydrology Research</i>. IWA Publishing. <a href=\"https://doi.org/10.2166/nh.2002.0004\">https://doi.org/10.2166/nh.2002.0004</a>","mla":"Burlando, Paolo, et al. “Modelling Mountainous Water Systems between Learning and Speculating Looking for Challenges.” <i>Hydrology Research</i>, vol. 33, no. 1, IWA Publishing, 2002, pp. 47–74, doi:<a href=\"https://doi.org/10.2166/nh.2002.0004\">10.2166/nh.2002.0004</a>."},"quality_controlled":"1","extern":"1","author":[{"full_name":"Burlando, Paolo","first_name":"Paolo","last_name":"Burlando"},{"last_name":"Pellicciotti","first_name":"Francesca","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"last_name":"Strasser","first_name":"Ulrich","full_name":"Strasser, Ulrich"}],"year":"2002","intvolume":"        33","month":"02","date_created":"2023-02-20T08:19:02Z","status":"public","volume":33,"issue":"1","publisher":"IWA Publishing","article_type":"original"},{"publisher":"Springer","article_type":"original","volume":55,"issue":"2","month":"01","date_created":"2018-12-11T11:48:53Z","status":"public","intvolume":"        55","publist_id":"6787","year":"2002","citation":{"ieee":"A. Perelygin, F. Kondrashov, I. Rogozin, and M. Brinton, “Evolution of the mouse polyubiquitin C gene,” <i>Journal of Molecular Evolution</i>, vol. 55, no. 2. Springer, pp. 202–210, 2002.","ama":"Perelygin A, Kondrashov F, Rogozin I, Brinton M. Evolution of the mouse polyubiquitin C gene. <i>Journal of Molecular Evolution</i>. 2002;55(2):202-210. doi:<a href=\"https://doi.org/10.1007/s00239-002-2318-0\">10.1007/s00239-002-2318-0</a>","chicago":"Perelygin, Andrey, Fyodor Kondrashov, Igor Rogozin, and Margo Brinton. “Evolution of the Mouse Polyubiquitin C Gene.” <i>Journal of Molecular Evolution</i>. Springer, 2002. <a href=\"https://doi.org/10.1007/s00239-002-2318-0\">https://doi.org/10.1007/s00239-002-2318-0</a>.","short":"A. Perelygin, F. Kondrashov, I. Rogozin, M. Brinton, Journal of Molecular Evolution 55 (2002) 202–210.","ista":"Perelygin A, Kondrashov F, Rogozin I, Brinton M. 2002. Evolution of the mouse polyubiquitin C gene. Journal of Molecular Evolution. 55(2), 202–210.","mla":"Perelygin, Andrey, et al. “Evolution of the Mouse Polyubiquitin C Gene.” <i>Journal of Molecular Evolution</i>, vol. 55, no. 2, Springer, 2002, pp. 202–10, doi:<a href=\"https://doi.org/10.1007/s00239-002-2318-0\">10.1007/s00239-002-2318-0</a>.","apa":"Perelygin, A., Kondrashov, F., Rogozin, I., &#38; Brinton, M. (2002). Evolution of the mouse polyubiquitin C gene. <i>Journal of Molecular Evolution</i>. Springer. <a href=\"https://doi.org/10.1007/s00239-002-2318-0\">https://doi.org/10.1007/s00239-002-2318-0</a>"},"extern":"1","quality_controlled":"1","author":[{"last_name":"Perelygin","first_name":"Andrey","full_name":"Perelygin, Andrey"},{"first_name":"Fyodor","last_name":"Kondrashov","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","full_name":"Kondrashov, Fyodor"},{"first_name":"Igor","last_name":"Rogozin","full_name":"Rogozin, Igor"},{"first_name":"Margo","last_name":"Brinton","full_name":"Brinton, Margo"}],"abstract":[{"lang":"eng","text":"The polymeric ubiquitin (poly-u) genes are composed of tandem 228-bp repeats with no spacer sequences between individual monomer units. Ubiquitin is one of the most conserved proteins known to date, and the individual units within a number of poly-u genes are significantly more similar to each other than would be expected if each unit evolved independently. It has been proposed that the rather striking similarity among poly-u monomers in some lineages is caused by a series of homogenization events. Here we report the sequences of the polyubiquitin-C (Ubc) genes in two mouse strains. Analysis of these sequences, as well as those of the previously reported Chinese hamster and rat poly-u genes, supports the assertion that the homogenization of the ubiquitin-C gene in rodents is due to unequal crossing-over events. The sequence divergence of noncoding DNA was used to estimate the frequency of unequal crossing-over events (6.3 x 10-5 events per generation) in the Ubc gene, as well as to provide evidence of apparent selection in the poly-u gene."}],"publication_status":"published","pmid":1,"title":"Evolution of the mouse polyubiquitin C gene","publication":"Journal of Molecular Evolution","_id":"859","external_id":{"pmid":["12107596"]},"date_published":"2002-01-01T00:00:00Z","page":"202 - 210","scopus_import":"1","publication_identifier":{"issn":["0022-2844"]},"oa_version":"None","date_updated":"2023-07-26T12:01:34Z","type":"journal_article","day":"01","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","article_processing_charge":"No","acknowledgement":"We are thankful to J.A. Southerland and P.L. Jiang for technical assistance in DNA sequencing, as well as to Y.I. Pavlov for helpful discussions. This work was supported by public Health Service Research Grant AI45135 from the Institute of Allergy and Infectious Diseases, National Institutes of Health.","doi":"10.1007/s00239-002-2318-0","language":[{"iso":"eng"}]},{"acknowledgement":"We are grateful to A.S. Kondrashov for numerous helpful suggestions, to I. King Jordan, M.A. Roytberg, J.L. Spouge and D.A. Kondrashov for useful discussions and to A.S. Kondrashov, I. King Jordan and D.J. Lipman for critical reading of the manuscript.","doi":"10.1186/gb-2002-3-2-research0008","language":[{"iso":"eng"}],"day":"01","date_updated":"2023-07-26T11:48:27Z","type":"journal_article","oa_version":"Published Version","article_processing_charge":"No","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","publication_identifier":{"issn":["1465-6906"]},"scopus_import":"1","date_published":"2002-01-01T00:00:00Z","external_id":{"pmid":["11864370"]},"publication_status":"published","abstract":[{"text":"BACKGROUND: Gene duplications have a major role in the evolution of new biological functions. Theoretical studies often assume that a duplication per se is selectively neutral and that, following a duplication, one of the gene copies is freed from purifying (stabilizing) selection, which creates the potential for evolution of a new function. RESULTS: In search of systematic evidence of accelerated evolution after duplication, we used data from 26 bacterial, six archaeal, and seven eukaryotic genomes to compare the mode and strength of selection acting on recently duplicated genes (paralogs) and on similarly diverged, unduplicated orthologous genes in different species. We find that the ratio of nonsynonymous to synonymous substitutions (Kn/Ks) in most paralogous pairs is &lt;&lt;1 and that paralogs typically evolve at similar rates, without significant asymmetry, indicating that both paralogs produced by a duplication are subject to purifying selection. This selection is, however, substantially weaker than the purifying selection affecting unduplicated orthologs that have diverged to the same extent as the analyzed paralogs. Most of the recently duplicated genes appear to be involved in various forms of environmental response; in particular, many of them encode membrane and secreted proteins. CONCLUSIONS: The results of this analysis indicate that recently duplicated paralogs evolve faster than orthologs with the same level of divergence and similar functions, but apparently do not experience a phase of neutral evolution. We hypothesize that gene duplications that persist in an evolving lineage are beneficial from the time of their origin, due primarily to a protein dosage effect in response to variable environmental conditions; duplications are likely to give rise to new functions at a later phase of their evolution once a higher level of divergence is reached.","lang":"eng"}],"oa":1,"_id":"871","title":"Selection in the evolution of gene duplications ","publication":"Genome Biology","pmid":1,"year":"2002","extern":"1","quality_controlled":"1","author":[{"first_name":"Fyodor","last_name":"Kondrashov","orcid":"0000-0001-8243-4694","full_name":"Kondrashov, Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Rogozin","first_name":"Igor","full_name":"Rogozin, Igor"},{"full_name":"Wolf, Yuri","last_name":"Wolf","first_name":"Yuri"},{"last_name":"Koonin","first_name":"Eugene","full_name":"Koonin, Eugene"}],"citation":{"mla":"Kondrashov, Fyodor, et al. “Selection in the Evolution of Gene Duplications .” <i>Genome Biology</i>, vol. 3, no. 2, BioMed Central, 2002, doi:<a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">10.1186/gb-2002-3-2-research0008</a>.","apa":"Kondrashov, F., Rogozin, I., Wolf, Y., &#38; Koonin, E. (2002). Selection in the evolution of gene duplications . <i>Genome Biology</i>. BioMed Central. <a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">https://doi.org/10.1186/gb-2002-3-2-research0008</a>","ista":"Kondrashov F, Rogozin I, Wolf Y, Koonin E. 2002. Selection in the evolution of gene duplications . Genome Biology. 3(2).","short":"F. Kondrashov, I. Rogozin, Y. Wolf, E. Koonin, Genome Biology 3 (2002).","chicago":"Kondrashov, Fyodor, Igor Rogozin, Yuri Wolf, and Eugene Koonin. “Selection in the Evolution of Gene Duplications .” <i>Genome Biology</i>. BioMed Central, 2002. <a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">https://doi.org/10.1186/gb-2002-3-2-research0008</a>.","ieee":"F. Kondrashov, I. Rogozin, Y. Wolf, and E. Koonin, “Selection in the evolution of gene duplications ,” <i>Genome Biology</i>, vol. 3, no. 2. BioMed Central, 2002.","ama":"Kondrashov F, Rogozin I, Wolf Y, Koonin E. Selection in the evolution of gene duplications . <i>Genome Biology</i>. 2002;3(2). doi:<a href=\"https://doi.org/10.1186/gb-2002-3-2-research0008\">10.1186/gb-2002-3-2-research0008</a>"},"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC65685/"}],"status":"public","date_created":"2018-12-11T11:48:57Z","month":"01","publist_id":"6781","intvolume":"         3","publisher":"BioMed Central","article_type":"original","volume":3,"issue":"2"},{"_id":"885","oa":1,"pmid":1,"title":"Dobzhansky-Muller incompatibilities in protein evolution","publication":"PNAS","abstract":[{"lang":"eng","text":"We study fitness landscape in the space of protein sequences by relating sets of human pathogenic missense mutations in 32 proteins to amino acid substitutions that occurred in the course of evolution of these proteins. On average, ≈10% of deviations of a nonhuman protein from its human ortholog are compensated pathogenic deviations (CPDs), i.e., are caused by an amino acid substitution that, at this site, would be pathogenic to humans. Normal functioning of a CPD-containing protein must be caused by other, compensatory deviations of the nonhuman species from humans. Together, a CPD and the corresponding compensatory deviation form a Dobzhansky-Muller incompatibility that can be visualized as the corner on a fitness ridge. Thus, proteins evolve along fitness ridges which contain only ≈10 steps between sucessive corners. The fraction of CPDs among all deviations of a protein from its human ortholog does not increase with the evolutionary distance between the proteins, indicating that subtitutions that carry evolving proteins around these corners occur in rapid succession, driven by positive selection. Data on fitness of interspecies hybrids suggest that the compensatory change that makes a CPD fit usually occurs within the same protein. Data on protein structures and on cooccurrence of amino acids at different sites of multiple orthologous proteins often make it possible to provisionally identify the substitution that compensates a partiCUlar CPD."}],"publication_status":"published","quality_controlled":"1","author":[{"first_name":"Alexey","last_name":"Kondrashov","full_name":"Kondrashov, Alexey"},{"last_name":"Sunyaev","first_name":"Shamil","full_name":"Sunyaev, Shamil"},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","full_name":"Kondrashov, Fyodor","first_name":"Fyodor","last_name":"Kondrashov"}],"extern":"1","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC137512/"}],"citation":{"mla":"Kondrashov, Alexey, et al. “Dobzhansky-Muller Incompatibilities in Protein Evolution.” <i>PNAS</i>, vol. 99, no. 23, National Academy of Sciences, 2002, pp. 14878–83, doi:<a href=\"https://doi.org/10.1073/pnas.232565499\">10.1073/pnas.232565499</a>.","apa":"Kondrashov, A., Sunyaev, S., &#38; Kondrashov, F. (2002). Dobzhansky-Muller incompatibilities in protein evolution. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.232565499\">https://doi.org/10.1073/pnas.232565499</a>","ama":"Kondrashov A, Sunyaev S, Kondrashov F. Dobzhansky-Muller incompatibilities in protein evolution. <i>PNAS</i>. 2002;99(23):14878-14883. doi:<a href=\"https://doi.org/10.1073/pnas.232565499\">10.1073/pnas.232565499</a>","ieee":"A. Kondrashov, S. Sunyaev, and F. Kondrashov, “Dobzhansky-Muller incompatibilities in protein evolution,” <i>PNAS</i>, vol. 99, no. 23. National Academy of Sciences, pp. 14878–14883, 2002.","short":"A. Kondrashov, S. Sunyaev, F. Kondrashov, PNAS 99 (2002) 14878–14883.","chicago":"Kondrashov, Alexey, Shamil Sunyaev, and Fyodor Kondrashov. “Dobzhansky-Muller Incompatibilities in Protein Evolution.” <i>PNAS</i>. National Academy of Sciences, 2002. <a href=\"https://doi.org/10.1073/pnas.232565499\">https://doi.org/10.1073/pnas.232565499</a>.","ista":"Kondrashov A, Sunyaev S, Kondrashov F. 2002. Dobzhansky-Muller incompatibilities in protein evolution. PNAS. 99(23), 14878–14883."},"year":"2002","publist_id":"6763","intvolume":"        99","status":"public","month":"11","date_created":"2018-12-11T11:49:01Z","volume":99,"issue":"23","publisher":"National Academy of Sciences","article_type":"original","doi":"10.1073/pnas.232565499","language":[{"iso":"eng"}],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","article_processing_charge":"No","day":"12","oa_version":"Published Version","type":"journal_article","date_updated":"2023-07-26T09:48:37Z","scopus_import":"1","publication_identifier":{"issn":["0027-8424"]},"page":"14878 - 14883","external_id":{"pmid":["12403824"]},"date_published":"2002-11-12T00:00:00Z"},{"abstract":[{"text":"Transcription is a slow and expensive process: in eukaryotes, approximately 20 nucleotides can be transcribed per second at the expense of at least two ATP molecules per nucleotide. Thus, at least for highly expressed genes, transcription of long introns, which are particularly common in mammals, is costly. Using data on the expression of genes that encode proteins in Caenorhabditis elegans and Homo sapiens, we show that introns in highly expressed genes are substantially shorter than those in genes that are expressed at low levels. This difference is greater in humans, such that introns are, on average, 14 times shorter in highly expressed genes than in genes with low expression, whereas in C. Elegans the difference in intron length is only twofold. In contrast, the density of introns in a gene does not strongly depend on the level of gene expression. Thus, natural selection appears to favor short introns in highly expressed genes to minimize the cost of transcription and other molecular processes, such as splicing.\r\n","lang":"eng"}],"publication_status":"published","pmid":1,"title":"Selection for short introns in highly expressed genes","publication":"Nature Genetics","_id":"897","year":"2002","citation":{"apa":"Castillo Davis, C., Mekhedov, S., Hartl, D., Koonin, E., &#38; Kondrashov, F. (2002). Selection for short introns in highly expressed genes. <i>Nature Genetics</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ng940\">https://doi.org/10.1038/ng940</a>","mla":"Castillo Davis, Cristian, et al. “Selection for Short Introns in Highly Expressed Genes.” <i>Nature Genetics</i>, vol. 31, no. 4, Nature Publishing Group, 2002, pp. 415–18, doi:<a href=\"https://doi.org/10.1038/ng940\">10.1038/ng940</a>.","ama":"Castillo Davis C, Mekhedov S, Hartl D, Koonin E, Kondrashov F. Selection for short introns in highly expressed genes. <i>Nature Genetics</i>. 2002;31(4):415-418. doi:<a href=\"https://doi.org/10.1038/ng940\">10.1038/ng940</a>","ieee":"C. Castillo Davis, S. Mekhedov, D. Hartl, E. Koonin, and F. Kondrashov, “Selection for short introns in highly expressed genes,” <i>Nature Genetics</i>, vol. 31, no. 4. Nature Publishing Group, pp. 415–418, 2002.","ista":"Castillo Davis C, Mekhedov S, Hartl D, Koonin E, Kondrashov F. 2002. Selection for short introns in highly expressed genes. Nature Genetics. 31(4), 415–418.","chicago":"Castillo Davis, Cristian, Sergei Mekhedov, Daniel Hartl, Eugene Koonin, and Fyodor Kondrashov. “Selection for Short Introns in Highly Expressed Genes.” <i>Nature Genetics</i>. Nature Publishing Group, 2002. <a href=\"https://doi.org/10.1038/ng940\">https://doi.org/10.1038/ng940</a>.","short":"C. Castillo Davis, S. Mekhedov, D. Hartl, E. Koonin, F. Kondrashov, Nature Genetics 31 (2002) 415–418."},"quality_controlled":"1","extern":"1","author":[{"full_name":"Castillo Davis, Cristian","last_name":"Castillo Davis","first_name":"Cristian"},{"full_name":"Mekhedov, Sergei","last_name":"Mekhedov","first_name":"Sergei"},{"last_name":"Hartl","first_name":"Daniel","full_name":"Hartl, Daniel"},{"last_name":"Koonin","first_name":"Eugene","full_name":"Koonin, Eugene"},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","full_name":"Kondrashov, Fyodor","orcid":"0000-0001-8243-4694","last_name":"Kondrashov","first_name":"Fyodor"}],"month":"08","date_created":"2018-12-11T11:49:05Z","status":"public","intvolume":"        31","publist_id":"6751","article_type":"original","publisher":"Nature Publishing Group","volume":31,"issue":"4","acknowledgement":"We are grateful to A. Kondrashov, I. Rogozin and A. Feldman for reading the manuscript and P. Bouman, J. Cherry, J. Blumensteil and T. Kim for discussion.","language":[{"iso":"eng"}],"doi":"10.1038/ng940","oa_version":"None","date_updated":"2023-07-26T09:45:30Z","type":"journal_article","day":"01","article_processing_charge":"No","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","scopus_import":"1","external_id":{"pmid":["12134150"]},"date_published":"2002-08-01T00:00:00Z","page":"415 - 418"},{"intvolume":"       149","publist_id":"5387","publication_identifier":{"issn":["1010-6030"]},"month":"06","date_created":"2018-12-11T11:53:44Z","status":"public","date_published":"2002-06-28T00:00:00Z","volume":149,"page":"191 - 198","issue":"1-3","publisher":"Elsevier","publication":"Journal of Photochemistry and Photobiology A: Chemistry","title":"A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells","_id":"1737","language":[{"iso":"eng"}],"doi":"10.1016/S1010-6030(02)00027-8","acknowledgement":"Financial support from NCSR “Demokritos” (Dimoerevna 598 project), Empeirikeion Foundation and General Secretariat for Research and Technology of Greece (EPET II, Greece–France and Greece–Czech Republic bilateral collaboration projects) is also greatly acknowledged. G. Katsaros thanks the Greek State Scholarships Foundation (IKY) for fellowship allowance","abstract":[{"lang":"eng","text":"A new solvent-free composite polymer electrolyte consisting of high-molecular mass polyethylene oxide (PEO) filled with titanium oxide and containing LiI and I2 was developed. The introduction of the inorganic filler (TiO2 Degussa P25) into the polymer matrix produces dramatic morphological changes to the host polymer structure. Upon addition of the inorganic oxide, the surface roughness increases, with respect to the original polymer and in parallel, the fractal dimension decreases. Both the thermograms and the atomic force microscope (AFM) pictures confirm the amorphicity of the composite electrolyte. The polymer sub-units are held together in a parallel orientation, forming straight long chains of about 500 nm in width, along which TiO2 spherical particles of about 20-25 nm in diameter are distributed. The polymer chains separated by the titania particles are arranged in a three-dimensional, mechanically stable network, that creates free space and voids into which the iodide/triodide anions can easily migrate. All solid-state dye-sensitized solar cells fabricated using this composite electrolyte present high efficiencies (typical maximum incident photon to current efficiency (IPCE) as high as 40% at 520 nm and overall conversion efficiency (η) of 0.96% (Voc = 0.67 V, Jsc = 2.050 mA/cm2, FF = 39%) under direct solar irradiation. Further improvement of the photovoltaic performance is expected by optimization of the electrolyte parameters and of the cell assembly."}],"publication_status":"published","citation":{"ista":"Katsaros G, Stergiopoulos T, Arabatzis I, Papadokostaki K, Falaras P. 2002. A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells. Journal of Photochemistry and Photobiology A: Chemistry. 149(1–3), 191–198.","chicago":"Katsaros, Georgios, Thomas Stergiopoulos, Iannis Arabatzis, Kyriaki Papadokostaki, and Polycarpos Falaras. “A Solvent-Free Composite Polymer/Inorganic Oxide Electrolyte for High Efficiency Solid-State Dye-Sensitized Solar Cells.” <i>Journal of Photochemistry and Photobiology A: Chemistry</i>. Elsevier, 2002. <a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">https://doi.org/10.1016/S1010-6030(02)00027-8</a>.","short":"G. Katsaros, T. Stergiopoulos, I. Arabatzis, K. Papadokostaki, P. Falaras, Journal of Photochemistry and Photobiology A: Chemistry 149 (2002) 191–198.","ieee":"G. Katsaros, T. Stergiopoulos, I. Arabatzis, K. Papadokostaki, and P. Falaras, “A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells,” <i>Journal of Photochemistry and Photobiology A: Chemistry</i>, vol. 149, no. 1–3. Elsevier, pp. 191–198, 2002.","ama":"Katsaros G, Stergiopoulos T, Arabatzis I, Papadokostaki K, Falaras P. A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells. <i>Journal of Photochemistry and Photobiology A: Chemistry</i>. 2002;149(1-3):191-198. doi:<a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">10.1016/S1010-6030(02)00027-8</a>","mla":"Katsaros, Georgios, et al. “A Solvent-Free Composite Polymer/Inorganic Oxide Electrolyte for High Efficiency Solid-State Dye-Sensitized Solar Cells.” <i>Journal of Photochemistry and Photobiology A: Chemistry</i>, vol. 149, no. 1–3, Elsevier, 2002, pp. 191–98, doi:<a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">10.1016/S1010-6030(02)00027-8</a>.","apa":"Katsaros, G., Stergiopoulos, T., Arabatzis, I., Papadokostaki, K., &#38; Falaras, P. (2002). A solvent-free composite polymer/inorganic oxide electrolyte for high efficiency solid-state dye-sensitized solar cells. <i>Journal of Photochemistry and Photobiology A: Chemistry</i>. Elsevier. <a href=\"https://doi.org/10.1016/S1010-6030(02)00027-8\">https://doi.org/10.1016/S1010-6030(02)00027-8</a>"},"article_processing_charge":"No","author":[{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Katsaros, Georgios","first_name":"Georgios","last_name":"Katsaros"},{"last_name":"Stergiopoulos","first_name":"Thomas","full_name":"Stergiopoulos, Thomas"},{"last_name":"Arabatzis","first_name":"Iannis","full_name":"Arabatzis, Iannis"},{"full_name":"Papadokostaki, Kyriaki","last_name":"Papadokostaki","first_name":"Kyriaki"},{"first_name":"Polycarpos","last_name":"Falaras","full_name":"Falaras, Polycarpos"}],"extern":"1","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","oa_version":"None","date_updated":"2023-07-26T08:56:55Z","type":"journal_article","year":"2002","day":"28"},{"date_published":"2002-01-01T00:00:00Z","page":"125 - 135","volume":4801,"publisher":"SPIE","intvolume":"      4801","publist_id":"5385","month":"01","conference":{"name":"Organic Photovoltaics"},"date_created":"2018-12-11T11:53:45Z","status":"public","citation":{"apa":"Falaras, P., Chryssou, K., Stergiopoulos, T., Arabatzis, I., Katsaros, G., Catalano, V., … Bernard, M. (2002). Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes (Vol. 4801, pp. 125–135). Presented at the Organic Photovoltaics, SPIE. <a href=\"https://doi.org/10.1117/12.452446\">https://doi.org/10.1117/12.452446</a>","mla":"Falaras, Polycarpos, et al. <i>Dye-Sensitization of Titanium Dioxide Thin Films by Ru(II)-Bpp-Bpy Complexes</i>. Vol. 4801, SPIE, 2002, pp. 125–35, doi:<a href=\"https://doi.org/10.1117/12.452446\">10.1117/12.452446</a>.","ama":"Falaras P, Chryssou K, Stergiopoulos T, et al. Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes. In: Vol 4801. SPIE; 2002:125-135. doi:<a href=\"https://doi.org/10.1117/12.452446\">10.1117/12.452446</a>","ieee":"P. Falaras <i>et al.</i>, “Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes,” presented at the Organic Photovoltaics, 2002, vol. 4801, pp. 125–135.","short":"P. Falaras, K. Chryssou, T. Stergiopoulos, I. Arabatzis, G. Katsaros, V. Catalano, R. Kurtaran, A. Hugot Le Goff, M. Bernard, in:, SPIE, 2002, pp. 125–135.","chicago":"Falaras, Polycarpos, Katerina Chryssou, Thomas Stergiopoulos, Ioannis Arabatzis, Georgios Katsaros, Vincent Catalano, Raif Kurtaran, Anne Hugot Le Goff, and Marie Bernard. “Dye-Sensitization of Titanium Dioxide Thin Films by Ru(II)-Bpp-Bpy Complexes,” 4801:125–35. SPIE, 2002. <a href=\"https://doi.org/10.1117/12.452446\">https://doi.org/10.1117/12.452446</a>.","ista":"Falaras P, Chryssou K, Stergiopoulos T, Arabatzis I, Katsaros G, Catalano V, Kurtaran R, Hugot Le Goff A, Bernard M. 2002. Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes. Organic Photovoltaics vol. 4801, 125–135."},"extern":1,"quality_controlled":0,"author":[{"first_name":"Polycarpos","last_name":"Falaras","full_name":"Falaras, Polycarpos"},{"full_name":"Chryssou, Katerina","last_name":"Chryssou","first_name":"Katerina"},{"first_name":"Thomas","last_name":"Stergiopoulos","full_name":"Stergiopoulos, Thomas"},{"first_name":"Ioannis","last_name":"Arabatzis","full_name":"Arabatzis, Ioannis M"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Georgios Katsaros","first_name":"Georgios","last_name":"Katsaros"},{"last_name":"Catalano","first_name":"Vincent","full_name":"Catalano, Vincent J"},{"first_name":"Raif","last_name":"Kurtaran","full_name":"Kurtaran, Raif"},{"last_name":"Hugot Le Goff","first_name":"Anne","full_name":"Hugot-Le Goff, Anne"},{"full_name":"Bernard, Marie C","last_name":"Bernard","first_name":"Marie"}],"type":"conference","date_updated":"2021-01-12T06:52:53Z","year":"2002","day":"01","title":"Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes","_id":"1738","doi":"10.1117/12.452446","abstract":[{"text":"New dyes of the type Ru(II)(bdmpp)(bpy) [where bdmpp is 2,6-bis(3,5-dimethyl-N-pyrazoyl)pyridine and bpy is 2,2′-bipyridine-4,4′-dicarboxylic acid] are prepared and characterized by infra-red (IR), mass (MS) and electrospray mass spectroscopy (ES-MS) as well as 1H NMR (1D and 2D) spectroscopies. The compounds present broad and very high intensity MLCT absorption bands in the visible and can be chemically anchored on TiO2 films via ester-like linkage involving carboxylato groups. These complexes have been tested with success as potential molecular antennas in dye-sensitized solar cells. Both opaque and transparent nanocrystalline TiO2 thin film electrodes obtained by a doctor blade technique sensitized by these complexes were incorporated in a sandwich type regenerative photoelectrochemical solar cell containing 0.1M LiI +0.01M I2 in propylene carbonate as well as a platinized conductive glass counter electrode. The cell was characterized by Raman spectroscopy under anodic and cathodic bias. Two new vibration bands were observed in the lower frequency region. The first one at 112 cm-1 is due to tri-iodide formed on the photoactive electrode, and the second one at 167 cm-1 is a sign of the dye/iodide interaction and corresponds to a vibration in a chemically stable &quot;DI&quot; intermediate species. Under direct sunlight illumination (solar irradiance of 60 mW/cm2) by using a composite polymer solid state electrolyte, the cell ITO/TiO2/[Ru(II)(bdmpp)(bpy)(NCS)](PF6)/electrolyte/Pt-ITO produced a continuous photocurrent as high as 4.29mA/cm2, and gave IPCE values about half of the corresponding values obtained by the standard N3 dye under the same conditions. The photovoltage is about 600 mV and the overall energy conversion cell's efficiency is as high as 1.72%.","lang":"eng"}],"publication_status":"published"},{"page":"1259 - 1261","volume":2,"issue":"11","date_published":"2002-11-01T00:00:00Z","publisher":"American Chemical Society","publist_id":"5386","intvolume":"         2","status":"public","month":"11","date_created":"2018-12-11T11:53:45Z","author":[{"full_name":"Stergiopoulos, Thomas","first_name":"Thomas","last_name":"Stergiopoulos"},{"full_name":"Arabatzis, Iannis M","last_name":"Arabatzis","first_name":"Iannis"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Georgios Katsaros","last_name":"Katsaros","first_name":"Georgios"},{"full_name":"Falaras, Polycarpos","first_name":"Polycarpos","last_name":"Falaras"}],"extern":1,"quality_controlled":0,"citation":{"mla":"Stergiopoulos, Thomas, et al. “Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells.” <i>Nano Letters</i>, vol. 2, no. 11, American Chemical Society, 2002, pp. 1259–61, doi:<a href=\"https://doi.org/10.1021/nl025798u\">10.1021/nl025798u</a>.","apa":"Stergiopoulos, T., Arabatzis, I., Katsaros, G., &#38; Falaras, P. (2002). Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nl025798u\">https://doi.org/10.1021/nl025798u</a>","short":"T. Stergiopoulos, I. Arabatzis, G. Katsaros, P. Falaras, Nano Letters 2 (2002) 1259–1261.","chicago":"Stergiopoulos, Thomas, Iannis Arabatzis, Georgios Katsaros, and Polycarpos Falaras. “Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells.” <i>Nano Letters</i>. American Chemical Society, 2002. <a href=\"https://doi.org/10.1021/nl025798u\">https://doi.org/10.1021/nl025798u</a>.","ista":"Stergiopoulos T, Arabatzis I, Katsaros G, Falaras P. 2002. Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells. Nano Letters. 2(11), 1259–1261.","ieee":"T. Stergiopoulos, I. Arabatzis, G. Katsaros, and P. Falaras, “Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells,” <i>Nano Letters</i>, vol. 2, no. 11. American Chemical Society, pp. 1259–1261, 2002.","ama":"Stergiopoulos T, Arabatzis I, Katsaros G, Falaras P. Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells. <i>Nano Letters</i>. 2002;2(11):1259-1261. doi:<a href=\"https://doi.org/10.1021/nl025798u\">10.1021/nl025798u</a>"},"year":"2002","day":"01","date_updated":"2021-01-12T06:52:53Z","type":"journal_article","_id":"1739","doi":"10.1021/nl025798u","publication":"Nano Letters","title":"Binary Polyethylene Oxide/Titania Solid-State Redox Electrolyte for Highly Efficient Nanocrystalline TiO2 Photoelectrochemical Cells","abstract":[{"text":"Poly(ethylene oxide)/titania polymer electrolyte based photoelectrochemical cells have been fabricated with Ru(dcbpy)2(NCS)2 complex as the sensitizer and nanoporous TiO2 films as photoanodes. The introduction of the titania filler into the poly(ethylene oxide) matrix reduces the crystallinity of the polymer and enhances the mobility of the 1-/13 - redox couple, resulting in outstanding overall conversion efficiency (4.2% under direct sunlight illumination) of the corresponding dye-sensitized nanocrystalline TiO2 solar cell, one of the best efficiencies reported to date for a solid-state device.","lang":"eng"}],"publication_status":"published","acknowledgement":"Financial support from NCSR “Demokritos” and GSRT-Greece is greatly acknowledged. "},{"language":[{"iso":"eng"}],"doi":"10.1006/jnth.2002.2800","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","article_processing_charge":"No","date_updated":"2023-07-26T12:15:14Z","type":"journal_article","oa_version":"Published Version","day":"02","publication_identifier":{"issn":["0022-314X"]},"scopus_import":"1","date_published":"2002-10-02T00:00:00Z","page":"293 - 318","title":"Equal Sums of Two kth Powers","publication":"Journal of Number Theory","_id":"204","publication_status":"published","abstract":[{"text":"Let k⩾5 be an integer, and let x⩾1 be an arbitrary real number. We derive a bound[Formula presented] for the number of positive integers less than or equal to x which can be represented as a sum of two non-negative coprime kth powers, in essentially more than one way.","lang":"eng"}],"citation":{"apa":"Browning, T. D. (2002). Equal Sums of Two kth Powers. <i>Journal of Number Theory</i>. Academic Press. <a href=\"https://doi.org/10.1006/jnth.2002.2800\">https://doi.org/10.1006/jnth.2002.2800</a>","mla":"Browning, Timothy D. “Equal Sums of Two Kth Powers.” <i>Journal of Number Theory</i>, vol. 96, no. 2, Academic Press, 2002, pp. 293–318, doi:<a href=\"https://doi.org/10.1006/jnth.2002.2800\">10.1006/jnth.2002.2800</a>.","ista":"Browning TD. 2002. Equal Sums of Two kth Powers. Journal of Number Theory. 96(2), 293–318.","chicago":"Browning, Timothy D. “Equal Sums of Two Kth Powers.” <i>Journal of Number Theory</i>. Academic Press, 2002. <a href=\"https://doi.org/10.1006/jnth.2002.2800\">https://doi.org/10.1006/jnth.2002.2800</a>.","short":"T.D. Browning, Journal of Number Theory 96 (2002) 293–318.","ama":"Browning TD. Equal Sums of Two kth Powers. <i>Journal of Number Theory</i>. 2002;96(2):293-318. doi:<a href=\"https://doi.org/10.1006/jnth.2002.2800\">10.1006/jnth.2002.2800</a>","ieee":"T. D. Browning, “Equal Sums of Two kth Powers,” <i>Journal of Number Theory</i>, vol. 96, no. 2. Academic Press, pp. 293–318, 2002."},"author":[{"full_name":"Browning, Timothy D","orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D","last_name":"Browning"}],"extern":"1","quality_controlled":"1","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2002","intvolume":"        96","publist_id":"7708","date_created":"2018-12-11T11:45:11Z","month":"10","status":"public","volume":96,"issue":"2","publisher":"Academic Press","article_type":"original"},{"article_type":"original","publisher":"Elsevier","file_date_updated":"2023-08-01T12:44:09Z","volume":277,"issue":"6","status":"public","date_created":"2023-08-01T12:37:50Z","month":"02","intvolume":"       277","year":"2002","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"first_name":"Johannes","last_name":"Fürst","full_name":"Fürst, Johannes"},{"full_name":"Ritter, Markus","last_name":"Ritter","first_name":"Markus"},{"first_name":"Jakob","last_name":"Rudzki","full_name":"Rudzki, Jakob"},{"first_name":"Johann G","last_name":"Danzl","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973"},{"full_name":"Gschwentner, Martin","first_name":"Martin","last_name":"Gschwentner"},{"full_name":"Scandella, Elke","last_name":"Scandella","first_name":"Elke"},{"last_name":"Jakab","first_name":"Martin","full_name":"Jakab, Martin"},{"full_name":"König, Matthias","last_name":"König","first_name":"Matthias"},{"first_name":"Bernhard","last_name":"Oehl","full_name":"Oehl, Bernhard"},{"first_name":"Florian","last_name":"Lang","full_name":"Lang, Florian"},{"full_name":"Deetjen, Peter","first_name":"Peter","last_name":"Deetjen"},{"full_name":"Paulmichl, Markus","first_name":"Markus","last_name":"Paulmichl"}],"quality_controlled":"1","extern":"1","citation":{"apa":"Fürst, J., Ritter, M., Rudzki, J., Danzl, J. G., Gschwentner, M., Scandella, E., … Paulmichl, M. (2002). ICln Ion channel splice variants in Caenorhabditis elegans. <i>Journal of Biological Chemistry</i>. Elsevier. <a href=\"https://doi.org/10.1074/jbc.m107372200\">https://doi.org/10.1074/jbc.m107372200</a>","mla":"Fürst, Johannes, et al. “ICln Ion Channel Splice Variants in Caenorhabditis Elegans.” <i>Journal of Biological Chemistry</i>, vol. 277, no. 6, Elsevier, 2002, pp. 4435–45, doi:<a href=\"https://doi.org/10.1074/jbc.m107372200\">10.1074/jbc.m107372200</a>.","ista":"Fürst J, Ritter M, Rudzki J, Danzl JG, Gschwentner M, Scandella E, Jakab M, König M, Oehl B, Lang F, Deetjen P, Paulmichl M. 2002. ICln Ion channel splice variants in Caenorhabditis elegans. Journal of Biological Chemistry. 277(6), 4435–4445.","chicago":"Fürst, Johannes, Markus Ritter, Jakob Rudzki, Johann G Danzl, Martin Gschwentner, Elke Scandella, Martin Jakab, et al. “ICln Ion Channel Splice Variants in Caenorhabditis Elegans.” <i>Journal of Biological Chemistry</i>. Elsevier, 2002. <a href=\"https://doi.org/10.1074/jbc.m107372200\">https://doi.org/10.1074/jbc.m107372200</a>.","short":"J. Fürst, M. Ritter, J. Rudzki, J.G. Danzl, M. Gschwentner, E. Scandella, M. Jakab, M. König, B. Oehl, F. Lang, P. Deetjen, M. Paulmichl, Journal of Biological Chemistry 277 (2002) 4435–4445.","ieee":"J. Fürst <i>et al.</i>, “ICln Ion channel splice variants in Caenorhabditis elegans,” <i>Journal of Biological Chemistry</i>, vol. 277, no. 6. Elsevier, pp. 4435–4445, 2002.","ama":"Fürst J, Ritter M, Rudzki J, et al. ICln Ion channel splice variants in Caenorhabditis elegans. <i>Journal of Biological Chemistry</i>. 2002;277(6):4435-4445. doi:<a href=\"https://doi.org/10.1074/jbc.m107372200\">10.1074/jbc.m107372200</a>"},"publication_status":"published","abstract":[{"lang":"eng","text":"ICln is an ion channel identified by expression cloning using a cDNA library from Madin-Darby canine kidney cells. In all organisms tested so far, only one transcript for the ICln protein could be identified. Here we show that two splice variants of the ICln ion channel can be found in Caenorhabditis elegans. Moreover, we show that these two splice variants of the ICln channel protein, which we termed IClnN1 and IClnN2, can be functionally reconstituted and tested in an artificial lipid bilayer. In these experiments, the IClnN1-induced currents showed no voltage-dependent inactivation, whereas the IClnN2-induced currents fully inactivated at positive potentials. The molecular entity responsible for the voltage-dependent inactivation of IClnN2 is a cluster of positively charged amino acids encoded by exon 2a, which is absent in IClnN1. Our experiments suggest a mechanism of channel inactivation that is similar to the “ball and chain” model proposed for the Shaker potassium channel,i.e. a cluster of positively charged amino acids hinders ion permeation through the channel by a molecular and voltage-dependent interaction at the inner vestibulum of the pore. This hypothesis is supported by the finding that synthetic peptides with the same amino acid sequence as the positive cluster can transform the IClnN1-induced current to the current observed after reconstitution of IClnN2. Furthermore, we show that the nematode ICln gene is embedded in an operon harboring two additional genes, which we termed Nx and Ny. Co-reconstitution of Nx and IClnN2 and functional analysis of the related currents revealed a functional interaction between the two proteins, as evidenced by the fact that the IClnN2-induced current in the presence of Nx was no longer voltage-sensitive. The experiments described indicate that the genome organization in nematodes allows an effective approach for the identification of functional partner proteins of ion channels."}],"ddc":["570"],"oa":1,"_id":"13438","publication":"Journal of Biological Chemistry","title":"ICln Ion channel splice variants in Caenorhabditis elegans","pmid":1,"page":"4435-4445","date_published":"2002-02-08T00:00:00Z","file":[{"success":1,"file_id":"13439","date_updated":"2023-08-01T12:44:09Z","checksum":"13abe20f78eb37ab62beb006f62c69b7","file_name":"2002_JBC_Fuerst.pdf","access_level":"open_access","relation":"main_file","date_created":"2023-08-01T12:44:09Z","file_size":798920,"content_type":"application/pdf","creator":"alisjak"}],"external_id":{"pmid":["11706026"]},"keyword":["Cell Biology","Molecular Biology","Biochemistry"],"publication_identifier":{"issn":["0021-9258"]},"scopus_import":"1","day":"08","date_updated":"2023-08-01T12:55:54Z","type":"journal_article","oa_version":"Published Version","article_processing_charge":"No","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","acknowledgement":"We are grateful to D. E. Clapham, E. Wöll, G. Meyer, and G. Botta for helpful discussion and/or reading of the manuscript. We also thank T. Stiernagle for providing the N2 strain of C. elegans and A. Wimmer and M. Frick for technical assistance","language":[{"iso":"eng"}],"doi":"10.1074/jbc.m107372200","has_accepted_license":"1"},{"volume":7,"issue":"1","article_type":"original","publisher":"Deutsche Mathematiker Vereinigung","publist_id":"5741","intvolume":"         7","status":"public","date_created":"2018-12-11T11:52:06Z","month":"01","quality_controlled":"1","author":[{"first_name":"Tamas","last_name":"Hausel","full_name":"Hausel, Tamas","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Bernd","last_name":"Sturmfels","full_name":"Sturmfels, Bernd"}],"extern":"1","citation":{"mla":"Hausel, Tamás, and Bernd Sturmfels. “Toric Hyperkähler Varieties.” <i>Documenta Mathematica</i>, vol. 7, no. 1, Deutsche Mathematiker Vereinigung, 2002, pp. 495–534, doi:<a href=\"https://doi.org/10.4171/DM/130\">10.4171/DM/130</a>.","apa":"Hausel, T., &#38; Sturmfels, B. (2002). Toric hyperkähler varieties. <i>Documenta Mathematica</i>. Deutsche Mathematiker Vereinigung. <a href=\"https://doi.org/10.4171/DM/130\">https://doi.org/10.4171/DM/130</a>","ama":"Hausel T, Sturmfels B. Toric hyperkähler varieties. <i>Documenta Mathematica</i>. 2002;7(1):495-534. doi:<a href=\"https://doi.org/10.4171/DM/130\">10.4171/DM/130</a>","ieee":"T. Hausel and B. Sturmfels, “Toric hyperkähler varieties,” <i>Documenta Mathematica</i>, vol. 7, no. 1. Deutsche Mathematiker Vereinigung, pp. 495–534, 2002.","ista":"Hausel T, Sturmfels B. 2002. Toric hyperkähler varieties. Documenta Mathematica. 7(1), 495–534.","short":"T. Hausel, B. Sturmfels, Documenta Mathematica 7 (2002) 495–534.","chicago":"Hausel, Tamás, and Bernd Sturmfels. “Toric Hyperkähler Varieties.” <i>Documenta Mathematica</i>. Deutsche Mathematiker Vereinigung, 2002. <a href=\"https://doi.org/10.4171/DM/130\">https://doi.org/10.4171/DM/130</a>."},"main_file_link":[{"url":"https://ems.press/journals/dm/articles/8965058","open_access":"1"}],"year":"2002","oa":1,"_id":"1451","publication":"Documenta Mathematica","title":"Toric hyperkähler varieties","publication_status":"published","abstract":[{"text":"Extending work of Bielawski-Dancer 3 and Konno 14, we develop a theory of toric hyperkähler varieties, which involves toric geometry, matroid theory and convex polyhedra. The framework is a detailed study of semi-projective toric varieties, meaning GIT quotients of affine spaces by torus actions, and specifically, of Lawrence toric varieties, meaning GIT quotients of even-dimensional affine spaces by symplectic torus actions. A toric hyperkähler variety is a complete intersection in a Lawrence toric variety. Both varieties are non-compact, and they share the same cohomology ring, namely, the Stanley-Reisner ring of a matroid modulo a linear system of parameters. Familiar applications of toric geometry to combinatorics, including the Hard Lefschetz Theorem and the volume polynomials of Khovanskii-Pukhlikov 11, are extended to the hyperkähler setting. When the matroid is graphic, our construction gives the toric quiver varieties, in the sense of Nakajima 17.","lang":"eng"}],"page":"495 - 534","date_published":"2002-01-01T00:00:00Z","external_id":{"arxiv":["math/0203096"]},"publication_identifier":{"issn":["1431-0635"]},"scopus_import":"1","arxiv":1,"article_processing_charge":"No","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","day":"01","type":"journal_article","date_updated":"2023-07-26T09:16:33Z","oa_version":"Published Version","doi":"10.4171/DM/130","language":[{"iso":"eng"}],"acknowledgement":"Both authors were supported by the Miller Institute for Basic Research in Science, in the form of a Miller Research Fellowship (1999-2002) for the first author and a Miller Professorship (2000-2001) for the second author. The second author was also supported by the National Science\r\nFoundation (DMS-9970254)."},{"intvolume":"       419","publication_identifier":{"issn":["0028-0836"]},"month":"10","date_created":"2019-03-21T10:09:20Z","status":"public","external_id":{"pmid":["12410311"]},"date_published":"2002-10-31T00:00:00Z","issue":"6910","page":"925-929","volume":419,"publisher":"Springer Nature","pmid":1,"publication":"Nature","title":"Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans","_id":"6158","language":[{"iso":"eng"}],"doi":"10.1038/nature01170","abstract":[{"text":"Wild isolates of Caenorhabditis elegans can feed either alone or in groups1,2. This natural variation in behaviour is associated with a single residue difference in NPR-1, a predicted G-protein-coupled neuropeptide receptor related to Neuropeptide Y receptors2. Here we show that the NPR-1 isoform associated with solitary feeding acts in neurons exposed to the body fluid to inhibit social feeding. Furthermore, suppressing the activity of these neurons, called AQR, PQR and URX, using an activated K+ channel, inhibits social feeding. NPR-1 activity in AQR, PQR and URX neurons seems to suppress social feeding by antagonizing signalling through a cyclic GMP-gated ion channel encoded by tax-2 and tax-4. We show that mutations in tax-2 or tax-4 disrupt social feeding, and that tax-4 is required in several neurons for social feeding, including one or more of AQR, PQR and URX. The AQR, PQR and URX neurons are unusual in C. elegans because they are directly exposed to the pseudocoelomic body fluid3. Our data suggest a model in which these neurons integrate antagonistic signals to control the choice between social and solitary feeding behaviour.","lang":"eng"}],"publication_status":"published","citation":{"mla":"Coates, Juliet C., and Mario de Bono. “Antagonistic Pathways in Neurons Exposed to Body Fluid Regulate Social Feeding in Caenorhabditis Elegans.” <i>Nature</i>, vol. 419, no. 6910, Springer Nature, 2002, pp. 925–29, doi:<a href=\"https://doi.org/10.1038/nature01170\">10.1038/nature01170</a>.","apa":"Coates, J. C., &#38; de Bono, M. (2002). Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nature01170\">https://doi.org/10.1038/nature01170</a>","ieee":"J. C. Coates and M. de Bono, “Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans,” <i>Nature</i>, vol. 419, no. 6910. Springer Nature, pp. 925–929, 2002.","ama":"Coates JC, de Bono M. Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans. <i>Nature</i>. 2002;419(6910):925-929. doi:<a href=\"https://doi.org/10.1038/nature01170\">10.1038/nature01170</a>","ista":"Coates JC, de Bono M. 2002. Antagonistic pathways in neurons exposed to body fluid regulate social feeding in Caenorhabditis elegans. Nature. 419(6910), 925–929.","short":"J.C. Coates, M. de Bono, Nature 419 (2002) 925–929.","chicago":"Coates, Juliet C., and Mario de Bono. “Antagonistic Pathways in Neurons Exposed to Body Fluid Regulate Social Feeding in Caenorhabditis Elegans.” <i>Nature</i>. Springer Nature, 2002. <a href=\"https://doi.org/10.1038/nature01170\">https://doi.org/10.1038/nature01170</a>."},"quality_controlled":"1","author":[{"last_name":"Coates","first_name":"Juliet C.","full_name":"Coates, Juliet C."},{"orcid":"0000-0001-8347-0443","full_name":"de Bono, Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","last_name":"de Bono","first_name":"Mario"}],"extern":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa_version":"None","type":"journal_article","date_updated":"2021-01-12T08:06:26Z","year":"2002","day":"31"},{"doi":"10.1038/nature01169","language":[{"iso":"eng"}],"_id":"6159","publication":"Nature","title":"Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli","pmid":1,"publication_status":"published","abstract":[{"lang":"eng","text":"Natural Caenorhabditis elegans isolates exhibit either social or solitary feeding on bacteria. We show here that social feeding is induced by nociceptive neurons that detect adverse or stressful conditions. Ablation of the nociceptive neurons ASH and ADL transforms social animals into solitary feeders. Social feeding is probably due to the sensation of noxious chemicals by ASH and ADL neurons; it requires the genes ocr-2 and osm-9, which encode TRP-related transduction channels, and odr-4 and odr-8, which are required to localize sensory chemoreceptors to cilia. Other sensory neurons may suppress social feeding, as social feeding in ocr-2 and odr-4 mutants is restored by mutations in osm-3, a gene required for the development of 26 ciliated sensory neurons. Our data suggest a model for regulation of social feeding by opposing sensory inputs: aversive inputs to nociceptive neurons promote social feeding, whereas antagonistic inputs from neurons that express osm-3 inhibit aggregation."}],"author":[{"last_name":"de Bono","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8347-0443","full_name":"de Bono, Mario"},{"full_name":"Tobin, David M.","last_name":"Tobin","first_name":"David M."},{"last_name":"Davis","first_name":"M. Wayne","full_name":"Davis, M. Wayne"},{"last_name":"Avery","first_name":"Leon","full_name":"Avery, Leon"},{"first_name":"Cornelia I.","last_name":"Bargmann","full_name":"Bargmann, Cornelia I."}],"extern":"1","quality_controlled":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"short":"M. de Bono, D.M. Tobin, M.W. Davis, L. Avery, C.I. Bargmann, Nature 419 (2002) 899–903.","chicago":"Bono, Mario de, David M. Tobin, M. Wayne Davis, Leon Avery, and Cornelia I. Bargmann. “Social Feeding in Caenorhabditis Elegans Is Induced by Neurons That Detect Aversive Stimuli.” <i>Nature</i>. Springer Nature, 2002. <a href=\"https://doi.org/10.1038/nature01169\">https://doi.org/10.1038/nature01169</a>.","ista":"de Bono M, Tobin DM, Davis MW, Avery L, Bargmann CI. 2002. Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli. Nature. 419(6910), 899–903.","ieee":"M. de Bono, D. M. Tobin, M. W. Davis, L. Avery, and C. I. Bargmann, “Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli,” <i>Nature</i>, vol. 419, no. 6910. Springer Nature, pp. 899–903, 2002.","ama":"de Bono M, Tobin DM, Davis MW, Avery L, Bargmann CI. Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli. <i>Nature</i>. 2002;419(6910):899-903. doi:<a href=\"https://doi.org/10.1038/nature01169\">10.1038/nature01169</a>","apa":"de Bono, M., Tobin, D. M., Davis, M. W., Avery, L., &#38; Bargmann, C. I. (2002). Social feeding in Caenorhabditis elegans is induced by neurons that detect aversive stimuli. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nature01169\">https://doi.org/10.1038/nature01169</a>","mla":"de Bono, Mario, et al. “Social Feeding in Caenorhabditis Elegans Is Induced by Neurons That Detect Aversive Stimuli.” <i>Nature</i>, vol. 419, no. 6910, Springer Nature, 2002, pp. 899–903, doi:<a href=\"https://doi.org/10.1038/nature01169\">10.1038/nature01169</a>."},"day":"31","year":"2002","date_updated":"2021-01-12T08:06:27Z","type":"journal_article","oa_version":"None","publication_identifier":{"issn":["0028-0836"]},"intvolume":"       419","status":"public","date_created":"2019-03-21T10:27:04Z","month":"10","volume":419,"issue":"6910","page":"899-903","date_published":"2002-10-31T00:00:00Z","external_id":{"pmid":["12410303"]},"publisher":"Springer Nature"},{"publication_identifier":{"eissn":["1476-4679"],"issn":["1465-7392"]},"scopus_import":"1","page":"E177-E184","date_published":"2002-07-01T00:00:00Z","keyword":["Cell Biology"],"external_id":{"pmid":["12105431"]},"language":[{"iso":"eng"}],"doi":"10.1038/ncb0702-e177","day":"01","date_updated":"2022-07-18T08:58:03Z","type":"journal_article","oa_version":"None","article_processing_charge":"No","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","status":"public","date_created":"2022-04-07T07:57:19Z","month":"07","intvolume":"         4","article_type":"original","publisher":"Springer Nature","issue":"7","volume":4,"publication_status":"published","abstract":[{"text":"The small GTPase Ran is a key regulator of nucleocytoplasmic transport during interphase. The asymmetric distribution of the GTP-bound form of Ran across the nuclear envelope — that is, large quantities in the nucleus compared with small quantities in the cytoplasm — determines the directionality of many nuclear transport processes. Recent findings that Ran also functions in spindle formation and nuclear envelope assembly during mitosis suggest that Ran has a general role in chromatin-centred processes. Ran functions in these events as a signal for chromosome position.","lang":"eng"}],"_id":"11123","title":"The Ran GTPase as a marker of chromosome position in spindle formation and nuclear envelope assembly","publication":"Nature Cell Biology","pmid":1,"year":"2002","extern":"1","author":[{"first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"},{"full_name":"Gruss, Oliver J.","last_name":"Gruss","first_name":"Oliver J."},{"first_name":"Iain W.","last_name":"Mattaj","full_name":"Mattaj, Iain W."}],"quality_controlled":"1","citation":{"mla":"Hetzer, Martin, et al. “The Ran GTPase as a Marker of Chromosome Position in Spindle Formation and Nuclear Envelope Assembly.” <i>Nature Cell Biology</i>, vol. 4, no. 7, Springer Nature, 2002, pp. E177–84, doi:<a href=\"https://doi.org/10.1038/ncb0702-e177\">10.1038/ncb0702-e177</a>.","apa":"Hetzer, M., Gruss, O. J., &#38; Mattaj, I. W. (2002). The Ran GTPase as a marker of chromosome position in spindle formation and nuclear envelope assembly. <i>Nature Cell Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ncb0702-e177\">https://doi.org/10.1038/ncb0702-e177</a>","ama":"Hetzer M, Gruss OJ, Mattaj IW. The Ran GTPase as a marker of chromosome position in spindle formation and nuclear envelope assembly. <i>Nature Cell Biology</i>. 2002;4(7):E177-E184. doi:<a href=\"https://doi.org/10.1038/ncb0702-e177\">10.1038/ncb0702-e177</a>","ieee":"M. Hetzer, O. J. Gruss, and I. W. Mattaj, “The Ran GTPase as a marker of chromosome position in spindle formation and nuclear envelope assembly,” <i>Nature Cell Biology</i>, vol. 4, no. 7. Springer Nature, pp. E177–E184, 2002.","ista":"Hetzer M, Gruss OJ, Mattaj IW. 2002. The Ran GTPase as a marker of chromosome position in spindle formation and nuclear envelope assembly. Nature Cell Biology. 4(7), E177–E184.","short":"M. Hetzer, O.J. Gruss, I.W. Mattaj, Nature Cell Biology 4 (2002) E177–E184.","chicago":"Hetzer, Martin, Oliver J. Gruss, and Iain W. Mattaj. “The Ran GTPase as a Marker of Chromosome Position in Spindle Formation and Nuclear Envelope Assembly.” <i>Nature Cell Biology</i>. Springer Nature, 2002. <a href=\"https://doi.org/10.1038/ncb0702-e177\">https://doi.org/10.1038/ncb0702-e177</a>."}},{"publication_status":"published","abstract":[{"lang":"eng","text":"Ran GTPase plays important roles in nucleocytoplasmic transport in interphase [1, 2] and in both spindle formation and nuclear envelope (NE) assembly during mitosis [3, 4, 5]. The latter functions rely on the presence of high local concentrations of GTP-bound Ran near mitotic chromatin [3, 4, 5]. RanGTP localization has been proposed to result from the association of Ran's GDP/GTP exchange factor, RCC1, with chromatin [6, 7, 8, 9], but Ran is shown here to bind directly to chromatin in two modes, either dependent or independent of RCC1, and, where bound, to increase the affinity of chromatin for NE membranes. We propose that the Ran binding capacity of chromatin contributes to localized spindle and NE assembly."}],"oa":1,"_id":"11124","title":"Ran binds to chromatin by two distinct mechanisms","publication":"Current Biology","pmid":1,"year":"2002","quality_controlled":"1","author":[{"first_name":"Daniel","last_name":"Bilbao-Cortés","full_name":"Bilbao-Cortés, Daniel"},{"last_name":"HETZER","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X"},{"first_name":"Gernot","last_name":"Längst","full_name":"Längst, Gernot"},{"full_name":"Becker, Peter B.","last_name":"Becker","first_name":"Peter B."},{"full_name":"Mattaj, Iain W.","last_name":"Mattaj","first_name":"Iain W."}],"extern":"1","citation":{"mla":"Bilbao-Cortés, Daniel, et al. “Ran Binds to Chromatin by Two Distinct Mechanisms.” <i>Current Biology</i>, vol. 12, no. 13, Elsevier BV, 2002, pp. 1151–56, doi:<a href=\"https://doi.org/10.1016/s0960-9822(02)00927-2\">10.1016/s0960-9822(02)00927-2</a>.","apa":"Bilbao-Cortés, D., Hetzer, M., Längst, G., Becker, P. B., &#38; Mattaj, I. W. (2002). Ran binds to chromatin by two distinct mechanisms. <i>Current Biology</i>. Elsevier BV. <a href=\"https://doi.org/10.1016/s0960-9822(02)00927-2\">https://doi.org/10.1016/s0960-9822(02)00927-2</a>","chicago":"Bilbao-Cortés, Daniel, Martin Hetzer, Gernot Längst, Peter B. Becker, and Iain W. Mattaj. “Ran Binds to Chromatin by Two Distinct Mechanisms.” <i>Current Biology</i>. Elsevier BV, 2002. <a href=\"https://doi.org/10.1016/s0960-9822(02)00927-2\">https://doi.org/10.1016/s0960-9822(02)00927-2</a>.","short":"D. Bilbao-Cortés, M. Hetzer, G. Längst, P.B. Becker, I.W. Mattaj, Current Biology 12 (2002) 1151–1156.","ista":"Bilbao-Cortés D, Hetzer M, Längst G, Becker PB, Mattaj IW. 2002. Ran binds to chromatin by two distinct mechanisms. Current Biology. 12(13), 1151–1156.","ama":"Bilbao-Cortés D, Hetzer M, Längst G, Becker PB, Mattaj IW. Ran binds to chromatin by two distinct mechanisms. <i>Current Biology</i>. 2002;12(13):1151-1156. doi:<a href=\"https://doi.org/10.1016/s0960-9822(02)00927-2\">10.1016/s0960-9822(02)00927-2</a>","ieee":"D. Bilbao-Cortés, M. Hetzer, G. Längst, P. B. Becker, and I. W. Mattaj, “Ran binds to chromatin by two distinct mechanisms,” <i>Current Biology</i>, vol. 12, no. 13. Elsevier BV, pp. 1151–1156, 2002."},"main_file_link":[{"url":"https://doi.org/10.1016/S0960-9822(02)00927-2","open_access":"1"}],"status":"public","date_created":"2022-04-07T07:57:31Z","month":"07","intvolume":"        12","article_type":"letter_note","publisher":"Elsevier BV","volume":12,"issue":"13","language":[{"iso":"eng"}],"doi":"10.1016/s0960-9822(02)00927-2","day":"09","type":"journal_article","date_updated":"2022-07-18T08:58:05Z","oa_version":"Published Version","article_processing_charge":"No","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","publication_identifier":{"issn":["0960-9822"]},"scopus_import":"1","page":"1151-1156","date_published":"2002-07-09T00:00:00Z","external_id":{"pmid":["12121625"]},"keyword":["General Agricultural and Biological Sciences","General Biochemistry","Genetics and Molecular Biology"]},{"publisher":"International Press","page":"131 - 178","date_published":"2002-01-01T00:00:00Z","external_id":{"arxiv":["math-ph/0204027"]},"status":"public","date_created":"2018-12-11T11:57:04Z","arxiv":1,"month":"01","publication_identifier":{"isbn":["9781571461018"]},"publist_id":"4588","alternative_title":["Current Developments in Mathematics"],"day":"01","year":"2002","type":"book_chapter","date_updated":"2023-07-26T08:43:46Z","oa_version":"Published Version","extern":"1","article_processing_charge":"No","author":[{"last_name":"Lieb","first_name":"Élliott","full_name":"Lieb, Élliott"},{"full_name":"Solovej, Jan","last_name":"Solovej","first_name":"Jan"},{"first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert"},{"first_name":"Jakob","last_name":"Yngvason","full_name":"Yngvason, Jakob"}],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/math-ph/0204027"}],"citation":{"ieee":"É. Lieb, J. Solovej, R. Seiringer, and J. Yngvason, “The ground state of the Bose gas,” in <i>Current Developments in Mathematics, 2001</i>, International Press, 2002, pp. 131–178.","ama":"Lieb É, Solovej J, Seiringer R, Yngvason J. The ground state of the Bose gas. In: <i>Current Developments in Mathematics, 2001</i>. International Press; 2002:131-178. doi:<a href=\"https://doi.org/10.48550/arXiv.math-ph/0204027\">10.48550/arXiv.math-ph/0204027</a>","ista":"Lieb É, Solovej J, Seiringer R, Yngvason J. 2002.The ground state of the Bose gas. In: Current Developments in Mathematics, 2001. Current Developments in Mathematics, , 131–178.","chicago":"Lieb, Élliott, Jan Solovej, Robert Seiringer, and Jakob Yngvason. “The Ground State of the Bose Gas.” In <i>Current Developments in Mathematics, 2001</i>, 131–78. International Press, 2002. <a href=\"https://doi.org/10.48550/arXiv.math-ph/0204027\">https://doi.org/10.48550/arXiv.math-ph/0204027</a>.","short":"É. Lieb, J. Solovej, R. Seiringer, J. Yngvason, in:, Current Developments in Mathematics, 2001, International Press, 2002, pp. 131–178.","mla":"Lieb, Élliott, et al. “The Ground State of the Bose Gas.” <i>Current Developments in Mathematics, 2001</i>, International Press, 2002, pp. 131–78, doi:<a href=\"https://doi.org/10.48550/arXiv.math-ph/0204027\">10.48550/arXiv.math-ph/0204027</a>.","apa":"Lieb, É., Solovej, J., Seiringer, R., &#38; Yngvason, J. (2002). The ground state of the Bose gas. In <i>Current Developments in Mathematics, 2001</i> (pp. 131–178). International Press. <a href=\"https://doi.org/10.48550/arXiv.math-ph/0204027\">https://doi.org/10.48550/arXiv.math-ph/0204027</a>"},"publication_status":"published","abstract":[{"text":"Now that the low temperature properties of quantum-mechanical many-body systems (bosons) at low density, ρ, can be examined experimentally it is appropriate to revisit some of the formulas deduced by many authors 4-5 decades ago. For systems with repulsive (i.e. positive) interaction potentials the experimental low temperature state and the ground state are effectively synonymous -- and this fact is used in all modeling. In such cases, the leading term in the energy/particle is 2πℏ2aρ/m where a is the scattering length of the two-body potential. Owing to the delicate and peculiar nature of bosonic correlations (such as the strange N7/5 law for charged bosons), four decades of research failed to establish this plausible formula rigorously. The only previous lower bound for the energy was found by Dyson in 1957, but it was 14 times too small. The correct asymptotic formula has recently been obtained by us and this work will be presented. The reason behind the mathematical difficulties will be emphasized. A different formula, postulated as late as 1971 by Schick, holds in two-dimensions and this, too, will be shown to be correct. With the aid of the methodology developed to prove the lower bound for the homogeneous gas, two other problems have been successfully addressed. One is the proof by us that the Gross-Pitaevskii equation correctly describes the ground state in the `traps' actually used in the experiments. For this system it is also possible to prove complete Bose condensation, as we have shown. Another topic is a proof that Foldy's 1961 theory of a high density Bose gas of charged particles correctly describes its ground state energy.","lang":"eng"}],"doi":"10.48550/arXiv.math-ph/0204027","oa":1,"language":[{"iso":"eng"}],"_id":"2338","publication":"Current Developments in Mathematics, 2001","title":"The ground state of the Bose gas"},{"title":"Symmetry breaking in a model of a rotating Bose gas","_id":"2339","doi":"10.1090/conm/307","publication_status":"published","citation":{"chicago":"Seiringer, Robert. “Symmetry Breaking in a Model of a Rotating Bose Gas.” edited by Richardo Weder, Pavel Exner, and Benoit Grébert, 307:281–86. World Scientific Publishing, 2002. <a href=\"https://doi.org/10.1090/conm/307\">https://doi.org/10.1090/conm/307</a>.","short":"R. Seiringer, in:, R. Weder, P. Exner, B. Grébert (Eds.), World Scientific Publishing, 2002, pp. 281–286.","ista":"Seiringer R. 2002. Symmetry breaking in a model of a rotating Bose gas. QMath: Mathematical Results in Quantum Physics, Contemporary Mathematics, vol. 307, 281–286.","ieee":"R. Seiringer, “Symmetry breaking in a model of a rotating Bose gas,” presented at the QMath: Mathematical Results in Quantum Physics, 2002, vol. 307, pp. 281–286.","ama":"Seiringer R. Symmetry breaking in a model of a rotating Bose gas. In: Weder R, Exner P, Grébert B, eds. Vol 307. World Scientific Publishing; 2002:281-286. doi:<a href=\"https://doi.org/10.1090/conm/307\">10.1090/conm/307</a>","mla":"Seiringer, Robert. <i>Symmetry Breaking in a Model of a Rotating Bose Gas</i>. Edited by Richardo Weder et al., vol. 307, World Scientific Publishing, 2002, pp. 281–86, doi:<a href=\"https://doi.org/10.1090/conm/307\">10.1090/conm/307</a>.","apa":"Seiringer, R. (2002). Symmetry breaking in a model of a rotating Bose gas. In R. Weder, P. Exner, &#38; B. Grébert (Eds.) (Vol. 307, pp. 281–286). Presented at the QMath: Mathematical Results in Quantum Physics, World Scientific Publishing. <a href=\"https://doi.org/10.1090/conm/307\">https://doi.org/10.1090/conm/307</a>"},"author":[{"first_name":"Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Robert Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"quality_controlled":0,"extern":1,"type":"conference","date_updated":"2021-01-12T06:56:53Z","year":"2002","day":"01","alternative_title":["Contemporary Mathematics"],"intvolume":"       307","publist_id":"4587","conference":{"name":"QMath: Mathematical Results in Quantum Physics"},"month":"01","date_created":"2018-12-11T11:57:05Z","status":"public","date_published":"2002-01-01T00:00:00Z","volume":307,"page":"281 - 286","editor":[{"full_name":"Weder, Richardo","first_name":"Richardo","last_name":"Weder"},{"first_name":"Pavel","last_name":"Exner","full_name":"Exner, Pavel"},{"full_name":"Grébert, Benoit","first_name":"Benoit","last_name":"Grébert"}],"publisher":"World Scientific Publishing"},{"volume":88,"page":"1704091 - 1704094","issue":"17","date_published":"2002-04-29T00:00:00Z","publisher":"American Physical Society","publist_id":"4577","intvolume":"        88","status":"public","month":"04","date_created":"2018-12-11T11:57:08Z","quality_controlled":0,"extern":1,"author":[{"last_name":"Lieb","first_name":"Élliott","full_name":"Lieb, Élliott H"},{"first_name":"Robert","last_name":"Seiringer","full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"main_file_link":[{"url":"http://arxiv.org/abs/math-ph/0112032","open_access":"1"}],"citation":{"ieee":"É. Lieb and R. Seiringer, “Proof of Bose-Einstein condensation for dilute trapped gases,” <i>Physical Review Letters</i>, vol. 88, no. 17. American Physical Society, pp. 1704091–1704094, 2002.","ama":"Lieb É, Seiringer R. Proof of Bose-Einstein condensation for dilute trapped gases. <i>Physical Review Letters</i>. 2002;88(17):1704091-1704094. doi:<a href=\"https://doi.org/10.1103/PhysRevLett.88.170409\">10.1103/PhysRevLett.88.170409</a>","ista":"Lieb É, Seiringer R. 2002. Proof of Bose-Einstein condensation for dilute trapped gases. Physical Review Letters. 88(17), 1704091–1704094.","short":"É. Lieb, R. Seiringer, Physical Review Letters 88 (2002) 1704091–1704094.","chicago":"Lieb, Élliott, and Robert Seiringer. “Proof of Bose-Einstein Condensation for Dilute Trapped Gases.” <i>Physical Review Letters</i>. American Physical Society, 2002. <a href=\"https://doi.org/10.1103/PhysRevLett.88.170409\">https://doi.org/10.1103/PhysRevLett.88.170409</a>.","apa":"Lieb, É., &#38; Seiringer, R. (2002). Proof of Bose-Einstein condensation for dilute trapped gases. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.88.170409\">https://doi.org/10.1103/PhysRevLett.88.170409</a>","mla":"Lieb, Élliott, and Robert Seiringer. “Proof of Bose-Einstein Condensation for Dilute Trapped Gases.” <i>Physical Review Letters</i>, vol. 88, no. 17, American Physical Society, 2002, pp. 1704091–94, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.88.170409\">10.1103/PhysRevLett.88.170409</a>."},"year":"2002","day":"29","type":"journal_article","date_updated":"2021-01-12T06:56:56Z","_id":"2349","oa":1,"doi":"10.1103/PhysRevLett.88.170409","publication":"Physical Review Letters","title":"Proof of Bose-Einstein condensation for dilute trapped gases","abstract":[{"lang":"eng","text":"The Bose-Einstein condensation (BEC) of the ground state of bosonic atoms in a trap was discussed. The BEC was proved for bosons with two-body repulsive interaction potentials in the dilute limit, starting from the basic Schrodinger equation. The BEC was 100% into the state which minimized the Gross-Pitaevskii energy functional. The analysis also included rigorous proof of BEC in a physically realistic, continuum model."}],"publication_status":"published"},{"abstract":[{"lang":"eng","text":"Using the Pauli-Fierz model of non-relativistic quantum electrodynamics, we calculate the binding energy of an electron in the field of a nucleus of charge Z and in presence of the quantized radiation field. We consider the case of small coupling constant α, but fixed Zα and ultraviolet cut-off Λ. We prove that after renormalizing the mass the binding energy has, to leading order in α, a finite limit as Λ goes to infinity; i.e., the cut-off can be removed. The expression for the ground state energy shift thus obtained agrees with Bethe's formula for small values of Zα, but shows a different behavior for bigger values."}],"publication_status":"published","publication":"Advances in Theoretical and Mathematical Physics","title":"Mass renormalization and energy level shift in non-relativistic QED","_id":"2350","oa":1,"year":"2002","citation":{"mla":"Hainzl, Christian, and Robert Seiringer. “Mass Renormalization and Energy Level Shift in Non-Relativistic QED.” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 6, no. 5, International Press, 2002, pp. 847–71, doi:<a href=\"https://doi.org/10.4310/ATMP.2002.v6.n5.a3\">10.4310/ATMP.2002.v6.n5.a3</a>.","apa":"Hainzl, C., &#38; Seiringer, R. (2002). Mass renormalization and energy level shift in non-relativistic QED. <i>Advances in Theoretical and Mathematical Physics</i>. International Press. <a href=\"https://doi.org/10.4310/ATMP.2002.v6.n5.a3\">https://doi.org/10.4310/ATMP.2002.v6.n5.a3</a>","ieee":"C. Hainzl and R. Seiringer, “Mass renormalization and energy level shift in non-relativistic QED,” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 6, no. 5. International Press, pp. 847–871, 2002.","ama":"Hainzl C, Seiringer R. Mass renormalization and energy level shift in non-relativistic QED. <i>Advances in Theoretical and Mathematical Physics</i>. 2002;6(5):847-871. doi:<a href=\"https://doi.org/10.4310/ATMP.2002.v6.n5.a3\">10.4310/ATMP.2002.v6.n5.a3</a>","ista":"Hainzl C, Seiringer R. 2002. Mass renormalization and energy level shift in non-relativistic QED. Advances in Theoretical and Mathematical Physics. 6(5), 847–871.","chicago":"Hainzl, Christian, and Robert Seiringer. “Mass Renormalization and Energy Level Shift in Non-Relativistic QED.” <i>Advances in Theoretical and Mathematical Physics</i>. International Press, 2002. <a href=\"https://doi.org/10.4310/ATMP.2002.v6.n5.a3\">https://doi.org/10.4310/ATMP.2002.v6.n5.a3</a>.","short":"C. Hainzl, R. Seiringer, Advances in Theoretical and Mathematical Physics 6 (2002) 847–871."},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/math-ph/0205044"}],"author":[{"last_name":"Hainzl","first_name":"Christian","full_name":"Hainzl, Christian"},{"last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"extern":"1","quality_controlled":"1","month":"09","date_created":"2018-12-11T11:57:09Z","status":"public","intvolume":"         6","publist_id":"4574","publisher":"International Press","article_type":"original","volume":6,"issue":"5","acknowledgement":"We are grateful to Elliott Lieb for helpful discussions. C.H. was supported by a Marie Curie Fellowship of the European Community programme “Improving Human Research Potential and the Socioeconomic Knowledge Base” under contract number HPMFCT-2000-00660 and by the Deutsche Forschungsgemeinschaft, and acknowledges kind hospitality at Princeton University, where part of this work was done. R.S. was supported by the Austrian Science Fund in the form of an Erwin Schrödinger Fellowship.\r\n","language":[{"iso":"eng"}],"doi":"10.4310/ATMP.2002.v6.n5.a3","oa_version":"Published Version","type":"journal_article","date_updated":"2023-07-26T08:29:28Z","day":"01","user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","article_processing_charge":"No","arxiv":1,"scopus_import":"1","publication_identifier":{"issn":["1095-0761"]},"external_id":{"arxiv":["math-ph/0205044v3"]},"date_published":"2002-09-01T00:00:00Z","page":"847 - 871"}]