[{"publication":"Encyclopedia of Life Sciences","publisher":"Wiley-Blackwell","day":"23","title":"Cleavage and gastrulation in zebrafish embryos","year":"2005","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T07:44:30Z","citation":{"chicago":"Köppen, Mathias, and Carl-Philipp J Heisenberg. “Cleavage and Gastrulation in Zebrafish Embryos.” In <i>Encyclopedia of Life Sciences</i>. Wiley-Blackwell, 2005. <a href=\"https://doi.org/10.1038/npg.els.0001072\">https://doi.org/10.1038/npg.els.0001072</a>.","mla":"Köppen, Mathias, and Carl-Philipp J. Heisenberg. “Cleavage and Gastrulation in Zebrafish Embryos.” <i>Encyclopedia of Life Sciences</i>, Wiley-Blackwell, 2005, doi:<a href=\"https://doi.org/10.1038/npg.els.0001072\">10.1038/npg.els.0001072</a>.","short":"M. Köppen, C.-P.J. Heisenberg, in:, Encyclopedia of Life Sciences, Wiley-Blackwell, 2005.","apa":"Köppen, M., &#38; Heisenberg, C.-P. J. (2005). Cleavage and gastrulation in zebrafish embryos. In <i>Encyclopedia of Life Sciences</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1038/npg.els.0001072\">https://doi.org/10.1038/npg.els.0001072</a>","ista":"Köppen M, Heisenberg C-PJ. 2005.Cleavage and gastrulation in zebrafish embryos. In: Encyclopedia of Life Sciences. .","ieee":"M. Köppen and C.-P. J. Heisenberg, “Cleavage and gastrulation in zebrafish embryos,” in <i>Encyclopedia of Life Sciences</i>, Wiley-Blackwell, 2005.","ama":"Köppen M, Heisenberg C-PJ. Cleavage and gastrulation in zebrafish embryos. In: <i>Encyclopedia of Life Sciences</i>. Wiley-Blackwell; 2005. doi:<a href=\"https://doi.org/10.1038/npg.els.0001072\">10.1038/npg.els.0001072</a>"},"date_published":"2005-09-23T00:00:00Z","doi":"10.1038/npg.els.0001072","extern":"1","date_created":"2018-12-11T12:04:07Z","type":"book_chapter","publist_id":"2794","article_processing_charge":"No","abstract":[{"text":"During zebrafish gastrulation, the interplay between patterning events and morphogenesis creates an embryo out of a seemingly unstructured blastula stage embryo, an embryo with distinct polarities along its anterior–posterior, dorsoventral and left–right axes at the end of gastrulation.","lang":"eng"}],"author":[{"full_name":"Köppen, Mathias","first_name":"Mathias","last_name":"Köppen"},{"last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","full_name":"Heisenberg, Carl-Philipp J","orcid":"0000-0002-0912-4566"}],"oa_version":"None","_id":"3589","status":"public","language":[{"iso":"eng"}],"month":"09","publication_status":"published"},{"article_processing_charge":"No","acknowledgement":"BOOK REVIEWED - Gastrulation: From Cells to Embryo, Edited by Claudio Stern. Published by Cold Spring Harbor Laboratory Press: 2004. ","author":[{"full_name":"Castanon Ortega, Irinka","first_name":"Irinka","last_name":"Castanon Ortega"},{"orcid":"0000-0002-0912-4566","full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","last_name":"Heisenberg"}],"page":"19 - 19","issue":"1","intvolume":"         7","month":"01","publication_status":"published","language":[{"iso":"eng"}],"status":"public","oa_version":"None","_id":"3590","day":"01","publication":"Nature Cell Biology","publisher":"Nature Publishing Group","date_updated":"2020-10-07T06:26:47Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Castanon Ortega I, Heisenberg C-PJ. A stern view of gastrulation. <i>Nature Cell Biology</i>. 2005;7(1):19-19. doi:<a href=\"https://doi.org/10.1038/ncb0105-19\">10.1038/ncb0105-19</a>","ieee":"I. Castanon Ortega and C.-P. J. Heisenberg, “A stern view of gastrulation,” <i>Nature Cell Biology</i>, vol. 7, no. 1. Nature Publishing Group, pp. 19–19, 2005.","ista":"Castanon Ortega I, Heisenberg C-PJ. 2005. A stern view of gastrulation. Nature Cell Biology. 7(1), 19–19.","mla":"Castanon Ortega, Irinka, and Carl-Philipp J. Heisenberg. “A Stern View of Gastrulation.” <i>Nature Cell Biology</i>, vol. 7, no. 1, Nature Publishing Group, 2005, pp. 19–19, doi:<a href=\"https://doi.org/10.1038/ncb0105-19\">10.1038/ncb0105-19</a>.","short":"I. Castanon Ortega, C.-P.J. Heisenberg, Nature Cell Biology 7 (2005) 19–19.","apa":"Castanon Ortega, I., &#38; Heisenberg, C.-P. J. (2005). A stern view of gastrulation. <i>Nature Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncb0105-19\">https://doi.org/10.1038/ncb0105-19</a>","chicago":"Castanon Ortega, Irinka, and Carl-Philipp J Heisenberg. “A Stern View of Gastrulation.” <i>Nature Cell Biology</i>. Nature Publishing Group, 2005. <a href=\"https://doi.org/10.1038/ncb0105-19\">https://doi.org/10.1038/ncb0105-19</a>."},"year":"2005","title":"A stern view of gastrulation","extern":"1","doi":"10.1038/ncb0105-19","date_published":"2005-01-01T00:00:00Z","volume":7,"publist_id":"2793","type":"review","date_created":"2018-12-11T12:04:07Z"},{"publisher":"Nature Publishing Group","publication":"Heredity","day":"01","year":"2005","title":"Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes","date_updated":"2021-01-12T07:44:39Z","citation":{"ieee":"B. Nürnberger, N. H. Barton, L. Kruuk, and T. Vines, “Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes,” <i>Heredity</i>, vol. 94, no. 2. Nature Publishing Group, pp. 247–257, 2005.","ama":"Nürnberger B, Barton NH, Kruuk L, Vines T. Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes. <i>Heredity</i>. 2005;94(2):247-257. doi:<a href=\"https://doi.org/10.1038/sj.hdy.6800607\">10.1038/sj.hdy.6800607</a>","ista":"Nürnberger B, Barton NH, Kruuk L, Vines T. 2005. Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes. Heredity. 94(2), 247–257.","apa":"Nürnberger, B., Barton, N. H., Kruuk, L., &#38; Vines, T. (2005). Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes. <i>Heredity</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/sj.hdy.6800607\">https://doi.org/10.1038/sj.hdy.6800607</a>","mla":"Nürnberger, Beate, et al. “Mating Patterns in a Bombina Hybrid Zone: Inferences from Adult and Full Sib Genotypes.” <i>Heredity</i>, vol. 94, no. 2, Nature Publishing Group, 2005, pp. 247–57, doi:<a href=\"https://doi.org/10.1038/sj.hdy.6800607\">10.1038/sj.hdy.6800607</a>.","short":"B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.","chicago":"Nürnberger, Beate, Nicholas H Barton, Loeske Kruuk, and Timothy Vines. “Mating Patterns in a Bombina Hybrid Zone: Inferences from Adult and Full Sib Genotypes.” <i>Heredity</i>. Nature Publishing Group, 2005. <a href=\"https://doi.org/10.1038/sj.hdy.6800607\">https://doi.org/10.1038/sj.hdy.6800607</a>."},"date_published":"2005-02-01T00:00:00Z","extern":1,"doi":"10.1038/sj.hdy.6800607","type":"journal_article","date_created":"2018-12-11T12:04:14Z","volume":94,"publist_id":"2772","abstract":[{"lang":"eng","text":"We present two novel methods to infer mating patterns from genetic data. They differ from existing statistical methods of parentage inference in that they apply to populations that deviate from Hardy–Weinberg and linkage equilibrium, and so are suited for the study of assortative mating in hybrid zones. The core data set consists of genotypes at several loci for a number of full-sib clutches of unknown parentage. Our inference is based throughout on estimates of allelic associations within and across loci, such as heterozygote deficit and pairwise linkage disequilibrium. In the first method, the most likely parents of a given clutch are determined from the genotypic distribution of the associated adult population, given an explicit model of nonrandom mating. This leads to estimates of the strength of assortment. The second approach is based solely on the offspring genotypes and relies on the fact that a linear relation exists between associations among the offspring and those in the population of breeding pairs. We apply both methods to a sample from the hybrid zone between the fire-bellied toads Bombina bombina and B. variegata (Anura: Disco glossidae) in Croatia. Consistently, both approaches provide no evidence for a departure from random mating, despite adequate statistical power. Instead, B. variegata-like individuals among the adults contributed disproportionately to the offspring cohort, consistent with their preference for the type of breeding habitat in which this study was conducted."}],"quality_controlled":0,"author":[{"first_name":"Beate","full_name":"Nürnberger, Beate","last_name":"Nürnberger"},{"first_name":"Nicholas H","orcid":"0000-0002-8548-5240","full_name":"Nicholas Barton","last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kruuk, Loeske E","first_name":"Loeske","last_name":"Kruuk"},{"last_name":"Vines","full_name":"Vines, Timothy H","first_name":"Timothy"}],"page":"247 - 257","issue":"2","status":"public","_id":"3611","intvolume":"        94","month":"02","publication_status":"published"},{"date_published":"2005-08-09T00:00:00Z","doi":"10.1371/journal.pbio.0030282","extern":1,"date_created":"2018-12-11T12:04:14Z","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","publist_id":"2771","volume":3,"publisher":"Public Library of Science","publication":"PLoS Biology","day":"09","title":"Speciation and gene flow between snails of opposing chirality","year":"2005","citation":{"short":"A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).","mla":"Davison, Angus, et al. “Speciation and Gene Flow between Snails of Opposing Chirality.” <i>PLoS Biology</i>, vol. 3, no. 9, Public Library of Science, 2005, doi:<a href=\"https://doi.org/10.1371/journal.pbio.0030282\">10.1371/journal.pbio.0030282</a>.","apa":"Davison, A., Chiba, S., Barton, N. H., &#38; Clarke, B. (2005). Speciation and gene flow between snails of opposing chirality. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.0030282\">https://doi.org/10.1371/journal.pbio.0030282</a>","chicago":"Davison, Angus, Satoshi Chiba, Nicholas H Barton, and Bernard Clarke. “Speciation and Gene Flow between Snails of Opposing Chirality.” <i>PLoS Biology</i>. Public Library of Science, 2005. <a href=\"https://doi.org/10.1371/journal.pbio.0030282\">https://doi.org/10.1371/journal.pbio.0030282</a>.","ieee":"A. Davison, S. Chiba, N. H. Barton, and B. Clarke, “Speciation and gene flow between snails of opposing chirality,” <i>PLoS Biology</i>, vol. 3, no. 9. Public Library of Science, 2005.","ama":"Davison A, Chiba S, Barton NH, Clarke B. Speciation and gene flow between snails of opposing chirality. <i>PLoS Biology</i>. 2005;3(9). doi:<a href=\"https://doi.org/10.1371/journal.pbio.0030282\">10.1371/journal.pbio.0030282</a>","ista":"Davison A, Chiba S, Barton NH, Clarke B. 2005. Speciation and gene flow between snails of opposing chirality. PLoS Biology. 3(9)."},"date_updated":"2021-01-12T07:44:39Z","issue":"9","license":"https://creativecommons.org/licenses/by/4.0/","_id":"3612","status":"public","intvolume":"         3","month":"08","publication_status":"published","abstract":[{"text":"Left-right asymmetry in snails is intriguing because individuals of opposite chirality are either unable to mate or can only mate with difficulty, so could be reproductively isolated from each other. We have therefore investigated chiral evolution in the Japanese land snail genus Euhadra to understand whether changes in chirality have promoted speciation. In particular, we aimed to understand the effect of the maternal inheritance of chirality on reproductive isolation and gene flow. We found that the mitochondrial DNA phylogeny of Euhadra is consistent with a single, relatively ancient evolution of sinistral species and suggests either recent “single-gene speciation” or gene flow between chiral morphs that are unable to mate. To clarify the conditions under which new chiral morphs might evolve and whether single-gene speciation can occur, we developed a mathematical model that is relevant to any maternal-effect gene. The model shows that reproductive character displacement can promote the evolution of new chiral morphs, tending to counteract the positive frequency-dependent selection that would otherwise drive the more common chiral morph to fixation. This therefore suggests a general mechanism as to how chiral variation arises in snails. In populations that contain both chiral morphs, two different situations are then possible. In the first, gene flow is substantial between morphs even without interchiral mating, because of the maternal inheritance of chirality. In the second, reproductive isolation is possible but unstable, and will also lead to gene flow if intrachiral matings occasionally produce offspring with the opposite chirality. Together, the results imply that speciation by chiral reversal is only meaningful in the context of a complex biogeographical process, and so must usually involve other factors. In order to understand the roles of reproductive character displacement and gene flow in the chiral evolution of Euhadra, it will be necessary to investigate populations in which both chiral morphs coexist.","lang":"eng"}],"quality_controlled":0,"author":[{"first_name":"Angus","full_name":"Davison, Angus","last_name":"Davison"},{"last_name":"Chiba","full_name":"Chiba, Satoshi","first_name":"Satoshi"},{"first_name":"Nicholas H","full_name":"Nicholas Barton","orcid":"0000-0002-8548-5240","last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Bernard","full_name":"Clarke, Bernard","last_name":"Clarke"}]},{"abstract":[{"text":"The extent of genetic variation in fitness is a crucial issue in evolutionary biology and yet remains largely unresolved. In Drosophila melanogaster, we have devised a method that allows the net effects on fitness of heterozygous wild-type chromosomes to be measured, by competing them against two different “balancer” chromosomes. We have applied the method to a large sample of 40 wild-type third chromosomes and have measured fitnesses of nonlethal chromosomes as well as chromosomes bearing recessive lethals. The measurements were made in the environment to which the population was adapted and did not involve inbreeding. The results show an extraordinary similarity in the behavior of replicates of the same chromosome, indicating consistent genetic effects on total fitness. Some invading chromosomes increased rapidly and some slowly, and some rose to appreciable frequency after several months, but then declined again: in every case, the same pattern was seen in each replicate. We estimated relative fitnesses, rates of change of fitness, and relative viabilities, for each chromosome. There were significant fluctuations around the fitted model, which were also highly replicable. Wild-type chromosomes varied substantially in their effects on heterozygous fitness, and these effects vary through time, most likely as a result of genotype × environment interactions.","lang":"eng"}],"quality_controlled":0,"author":[{"full_name":"Gardner, Michael P","first_name":"Michael","last_name":"Gardner"},{"last_name":"Fowler","first_name":"Kevin","full_name":"Fowler, Kevin"},{"orcid":"0000-0002-8548-5240","full_name":"Nicholas Barton","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton"},{"full_name":"Patridge, Linda","first_name":"Linda","last_name":"Patridge"}],"page":"1553 - 1571","issue":"3","status":"public","_id":"3613","month":"03","publication_status":"published","intvolume":"       169","publication":"Genetics","publisher":"Genetics Society of America","day":"01","year":"2005","title":"Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns","date_updated":"2021-01-12T07:44:40Z","citation":{"chicago":"Gardner, Michael, Kevin Fowler, Nicholas H Barton, and Linda Patridge. “Genetic Variation for Total Fitness in Drosophila Melanogaster: Complex yet Replicable Patterns.” <i>Genetics</i>. Genetics Society of America, 2005. <a href=\"https://doi.org/10.1534/genetics.104.032367\">https://doi.org/10.1534/genetics.104.032367</a>.","apa":"Gardner, M., Fowler, K., Barton, N. H., &#38; Patridge, L. (2005). Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.104.032367\">https://doi.org/10.1534/genetics.104.032367</a>","mla":"Gardner, Michael, et al. “Genetic Variation for Total Fitness in Drosophila Melanogaster: Complex yet Replicable Patterns.” <i>Genetics</i>, vol. 169, no. 3, Genetics Society of America, 2005, pp. 1553–71, doi:<a href=\"https://doi.org/10.1534/genetics.104.032367\">10.1534/genetics.104.032367</a>.","short":"M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.","ista":"Gardner M, Fowler K, Barton NH, Patridge L. 2005. Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns. Genetics. 169(3), 1553–1571.","ieee":"M. Gardner, K. Fowler, N. H. Barton, and L. Patridge, “Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns,” <i>Genetics</i>, vol. 169, no. 3. Genetics Society of America, pp. 1553–1571, 2005.","ama":"Gardner M, Fowler K, Barton NH, Patridge L. Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns. <i>Genetics</i>. 2005;169(3):1553-1571. doi:<a href=\"https://doi.org/10.1534/genetics.104.032367\">10.1534/genetics.104.032367</a>"},"date_published":"2005-03-01T00:00:00Z","extern":1,"doi":"10.1534/genetics.104.032367","type":"journal_article","date_created":"2018-12-11T12:04:15Z","volume":169,"publist_id":"2770"},{"conference":{"name":"CBDAR: Camera Based Document Analysis and Recognition "},"month":"08","publication_status":"published","status":"public","_id":"3684","abstract":[{"text":"Ever since text processors became popular, users have\ndreamt of handling documents printed on paper as comfortably\nas electronic ones, with full text search typically\nappearing very close to the top of the wish list.\nThis paper presents the design of a prototype system that\ntakes a step into this direction. The user’s desktop is continuously\nmonitored and of each detected document a high\nresolution snapshot is taken using a digital camera. The\nresulting image is processed using specially designed dewarping\nand OCR algorithms, making a digital and fully\nsearchable version of the document available to the user in\nreal-time. These steps are performed without any user interaction.\nThis enables the system to run as a background\ntask without disturbing the user in her work, while at the\nsame time offering electronic access to all paper documents\nthat have been present on the desktop during the uptime of\nthe system.","lang":"eng"}],"author":[{"full_name":"Christoph Lampert","orcid":"0000-0001-8622-7887","first_name":"Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert"},{"last_name":"Braun","first_name":"Tim","full_name":"Braun,Tim"},{"first_name":"Adrian","full_name":"Ulges, Adrian","last_name":"Ulges"},{"last_name":"Keysers","full_name":"Keysers,Daniel","first_name":"Daniel"},{"first_name":"Thomas","full_name":"Breuel,Thomas M","last_name":"Breuel"}],"page":"79 - 86","quality_controlled":0,"extern":1,"date_published":"2005-08-29T00:00:00Z","publist_id":"2693","type":"conference","date_created":"2018-12-11T12:04:36Z","day":"29","publisher":"CBDAR","main_file_link":[{"open_access":"0","url":"http://pub.ist.ac.at/~chl/papers/lampert-cbdar2005.pdf"}],"date_updated":"2021-01-12T07:45:07Z","citation":{"chicago":"Lampert, Christoph, Tim Braun, Adrian Ulges, Daniel Keysers, and Thomas Breuel. “Oblivious Document Capture and Real-Time Retrieval,” 79–86. CBDAR, 2005.","mla":"Lampert, Christoph, et al. <i>Oblivious Document Capture and Real-Time Retrieval</i>. CBDAR, 2005, pp. 79–86.","short":"C. Lampert, T. Braun, A. Ulges, D. Keysers, T. Breuel, in:, CBDAR, 2005, pp. 79–86.","apa":"Lampert, C., Braun, T., Ulges, A., Keysers, D., &#38; Breuel, T. (2005). Oblivious document capture and real-time retrieval (pp. 79–86). Presented at the CBDAR: Camera Based Document Analysis and Recognition , CBDAR.","ista":"Lampert C, Braun T, Ulges A, Keysers D, Breuel T. 2005. Oblivious document capture and real-time retrieval. CBDAR: Camera Based Document Analysis and Recognition , 79–86.","ieee":"C. Lampert, T. Braun, A. Ulges, D. Keysers, and T. Breuel, “Oblivious document capture and real-time retrieval,” presented at the CBDAR: Camera Based Document Analysis and Recognition , 2005, pp. 79–86.","ama":"Lampert C, Braun T, Ulges A, Keysers D, Breuel T. Oblivious document capture and real-time retrieval. In: CBDAR; 2005:79-86."},"year":"2005","title":"Oblivious document capture and real-time retrieval"},{"doi":" 10.1109/ICDAR.2005.90","extern":1,"date_published":"2005-09-01T00:00:00Z","volume":2,"publist_id":"2680","date_created":"2018-12-11T12:04:38Z","type":"conference","day":"01","main_file_link":[{"url":"http:/pub.ist.ac.at/~chl/papers/ulges-icdar2004.pdf","open_access":"0"}],"publisher":"IEEE","date_updated":"2021-01-12T07:48:58Z","citation":{"ieee":"A. Ulges, C. Lampert, and T. Breuel, “Document image dewarping using robust estimation of curled text lines,” presented at the ICDAR: International Conference on Document Analysis and Recognition, 2005, vol. 2, pp. 1001–1005.","ama":"Ulges A, Lampert C, Breuel T. Document image dewarping using robust estimation of curled text lines. In: Vol 2. IEEE; 2005:1001-1005. doi:<a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\"> 10.1109/ICDAR.2005.90</a>","ista":"Ulges A, Lampert C, Breuel T. 2005. Document image dewarping using robust estimation of curled text lines. ICDAR: International Conference on Document Analysis and Recognition, Document Analysis and Recognition, vol. 2, 1001–1005.","apa":"Ulges, A., Lampert, C., &#38; Breuel, T. (2005). Document image dewarping using robust estimation of curled text lines (Vol. 2, pp. 1001–1005). Presented at the ICDAR: International Conference on Document Analysis and Recognition, IEEE. <a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\">https://doi.org/ 10.1109/ICDAR.2005.90</a>","mla":"Ulges, Adrian, et al. <i>Document Image Dewarping Using Robust Estimation of Curled Text Lines</i>. Vol. 2, IEEE, 2005, pp. 1001–05, doi:<a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\"> 10.1109/ICDAR.2005.90</a>.","short":"A. Ulges, C. Lampert, T. Breuel, in:, IEEE, 2005, pp. 1001–1005.","chicago":"Ulges, Adrian, Christoph Lampert, and Thomas Breuel. “Document Image Dewarping Using Robust Estimation of Curled Text Lines,” 2:1001–5. IEEE, 2005. <a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\">https://doi.org/ 10.1109/ICDAR.2005.90</a>."},"title":"Document image dewarping using robust estimation of curled text lines","year":"2005","conference":{"name":"ICDAR: International Conference on Document Analysis and Recognition"},"intvolume":"         2","month":"09","publication_status":"published","_id":"3689","status":"public","abstract":[{"text":"Digital cameras have become almost ubiquitous and their use for fast and casual capturing of natural images is unchallenged. For making images of documents, however, they have not caught up to flatbed scanners yet, mainly because camera images tend to suffer from distortion due to the perspective and are therefore limited in their further use for archival or OCR. For images of non-planar paper surfaces like books, page curl causes additional distortion, which poses an even greater problem due to its nonlinearity. This paper presents a new algorithm for removing both perspective and page curl distortion. It requires only a single camera image as input and relies on a priori layout information instead of additional hardware. Therefore, it is much more user friendly than most previous approaches, and allows for flexible ad hoc document capture. Results are presented showing that the algorithm produces visually pleasing output and increases OCR accuracy, thus having the potential to become a general purpose preprocessing tool for camera based document capture.","lang":"eng"}],"alternative_title":["Document Analysis and Recognition"],"page":"1001 - 1005","author":[{"last_name":"Ulges","full_name":"Ulges, Adrian","first_name":"Adrian"},{"first_name":"Christoph","full_name":"Christoph Lampert","orcid":"0000-0001-8622-7887","last_name":"Lampert","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Breuel","full_name":"Breuel,Thomas M","first_name":"Thomas"}],"quality_controlled":0},{"author":[{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","full_name":"Christoph Lampert","orcid":"0000-0001-8622-7887","first_name":"Christoph"}],"page":"179 - 195","quality_controlled":0,"abstract":[{"text":"In strictly pseudoconvex domains with smooth boundary, we prove a commutator relationship between admissible integral operators, as introduced by Lieb and Range, and smooth vector fields which are tangential at boundary points. This makes it possible to gain estimates for admissible operators in function spaces which involve tangential derivatives. Examples are given under with circumstances these can be transformed into genuine Sobolev- and C k-estimates.","lang":"eng"}],"intvolume":"        49","month":"01","publication_status":"published","status":"public","_id":"3691","issue":"1","date_updated":"2021-01-12T07:48:59Z","citation":{"chicago":"Lampert, Christoph. “Boundary Regularity of Admissible Operators.” <i>Publicacions Matemàtiques</i>. Universitat Autònoma de Barcelona, Departament de Matemàtique, 2005. <a href=\"https://doi.org/10.5565/PUBLMAT_49105_08\">https://doi.org/10.5565/PUBLMAT_49105_08</a>.","apa":"Lampert, C. (2005). Boundary regularity of admissible operators. <i>Publicacions Matemàtiques</i>. Universitat Autònoma de Barcelona, Departament de Matemàtique. <a href=\"https://doi.org/10.5565/PUBLMAT_49105_08\">https://doi.org/10.5565/PUBLMAT_49105_08</a>","mla":"Lampert, Christoph. “Boundary Regularity of Admissible Operators.” <i>Publicacions Matemàtiques</i>, vol. 49, no. 1, Universitat Autònoma de Barcelona, Departament de Matemàtique, 2005, pp. 179–95, doi:<a href=\"https://doi.org/10.5565/PUBLMAT_49105_08\">10.5565/PUBLMAT_49105_08</a>.","short":"C. Lampert, Publicacions Matemàtiques 49 (2005) 179–195.","ista":"Lampert C. 2005. Boundary regularity of admissible operators. Publicacions Matemàtiques. 49(1), 179–195.","ieee":"C. Lampert, “Boundary regularity of admissible operators,” <i>Publicacions Matemàtiques</i>, vol. 49, no. 1. Universitat Autònoma de Barcelona, Departament de Matemàtique, pp. 179–195, 2005.","ama":"Lampert C. Boundary regularity of admissible operators. <i>Publicacions Matemàtiques</i>. 2005;49(1):179-195. doi:<a href=\"https://doi.org/10.5565/PUBLMAT_49105_08\">10.5565/PUBLMAT_49105_08</a>"},"title":"Boundary regularity of admissible operators","year":"2005","day":"01","publication":"Publicacions Matemàtiques","publisher":"Universitat Autònoma de Barcelona, Departament de Matemàtique","volume":49,"publist_id":"2673","type":"journal_article","date_created":"2018-12-11T12:04:38Z","extern":1,"doi":"10.5565/PUBLMAT_49105_08","date_published":"2005-01-01T00:00:00Z"},{"issue":"4","status":"public","_id":"3720","oa_version":"None","publication_status":"published","month":"01","intvolume":"        57","language":[{"iso":"eng"}],"article_processing_charge":"No","author":[{"id":"30CC5506-F248-11E8-B48F-1D18A9856A87","last_name":"Guzmán","full_name":"Guzmán, José","first_name":"José"},{"full_name":"Gerevich, Zoltan","first_name":"Zoltan","last_name":"Gerevich"},{"first_name":"Jan","full_name":"Hengstler, Jan","last_name":"Hengstler"},{"first_name":"Peter","full_name":"Illes, Peter","last_name":"Illes"},{"last_name":"Kleemann","first_name":"Werner","full_name":"Kleemann, Werner"}],"page":"235 - 238","date_published":"2005-01-01T00:00:00Z","extern":"1","doi":"10.1002/syn.20177","type":"journal_article","date_created":"2018-12-11T12:04:48Z","volume":57,"publist_id":"2510","publication":"Synapse","publisher":"Wiley","day":"01","year":"2005","title":"P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic neurotransmission in the rat prefrontal cortex.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Guzmán, José, Zoltan Gerevich, Jan Hengstler, Peter Illes, and Werner Kleemann. “P2Y1 Receptors Inhibit Both Strength and Plasticity of Glutamatergic Synaptic Neurotransmission in the Rat Prefrontal Cortex.” <i>Synapse</i>. Wiley, 2005. <a href=\"https://doi.org/10.1002/syn.20177\">https://doi.org/10.1002/syn.20177</a>.","short":"J. Guzmán, Z. Gerevich, J. Hengstler, P. Illes, W. Kleemann, Synapse 57 (2005) 235–238.","mla":"Guzmán, José, et al. “P2Y1 Receptors Inhibit Both Strength and Plasticity of Glutamatergic Synaptic Neurotransmission in the Rat Prefrontal Cortex.” <i>Synapse</i>, vol. 57, no. 4, Wiley, 2005, pp. 235–38, doi:<a href=\"https://doi.org/10.1002/syn.20177\">10.1002/syn.20177</a>.","apa":"Guzmán, J., Gerevich, Z., Hengstler, J., Illes, P., &#38; Kleemann, W. (2005). P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic neurotransmission in the rat prefrontal cortex. <i>Synapse</i>. Wiley. <a href=\"https://doi.org/10.1002/syn.20177\">https://doi.org/10.1002/syn.20177</a>","ista":"Guzmán J, Gerevich Z, Hengstler J, Illes P, Kleemann W. 2005. P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic neurotransmission in the rat prefrontal cortex. Synapse. 57(4), 235–238.","ieee":"J. Guzmán, Z. Gerevich, J. Hengstler, P. Illes, and W. Kleemann, “P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic neurotransmission in the rat prefrontal cortex.,” <i>Synapse</i>, vol. 57, no. 4. Wiley, pp. 235–238, 2005.","ama":"Guzmán J, Gerevich Z, Hengstler J, Illes P, Kleemann W. P2Y1 receptors inhibit both strength and plasticity of glutamatergic synaptic neurotransmission in the rat prefrontal cortex. <i>Synapse</i>. 2005;57(4):235-238. doi:<a href=\"https://doi.org/10.1002/syn.20177\">10.1002/syn.20177</a>"},"date_updated":"2021-01-12T07:51:43Z"},{"issue":"2","intvolume":"        88","month":"02","publication_status":"published","status":"public","_id":"3721","abstract":[{"lang":"eng","text":"Recent advances in atomic force microscopy allowed globular and membrane proteins to be mechanically unfolded on a single-molecule level. Presented is an extension to the existing force spectroscopy experiments. While unfolding single bacteriorhodopsins from native purple membranes, small oscillation amplitudes (6–9nm) were supplied to the vertical displacement of the cantilever at a frequency of 3kHz. The phase and amplitude response of the cantilever-protein system was converted to reveal the elastic (conservative) and viscous (dissipative) contributions to the unfolding process. The elastic response (stiffness) of the extended parts of the protein were in the range of a few tens pN/nm and could be well described by the derivative of the wormlike chain model. Discrete events in the viscous response coincided with the unfolding of single secondary structure elements and were in the range of 1μNs/m. In addition, these force modulation spectroscopy experiments revealed novel mechanical unfolding intermediates of bacteriorhodopsin. We found that kinks result in a loss of unfolding cooperativity in transmembrane helices. Reconstructing force-distance spectra by the integration of amplitude-distance spectra verified their position, offering a novel approach to detect intermediates during the forced unfolding of single proteins."}],"author":[{"first_name":"Harald L","orcid":"0000-0002-8023-9315","full_name":"Harald Janovjak","last_name":"Janovjak","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Mueller","full_name":"Mueller, Daniel J","first_name":"Daniel"},{"last_name":"Humphris","full_name":"Humphris, Andrew D","first_name":"Andrew"}],"page":"1423 - 1431","quality_controlled":0,"extern":1,"doi":"10.1529/biophysj.104.052746","date_published":"2005-02-01T00:00:00Z","publist_id":"2509","volume":88,"type":"journal_article","date_created":"2018-12-11T12:04:48Z","oa":1,"day":"01","publisher":"Biophysical Society","publication":"Biophysical Journal","main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1305144/"}],"date_updated":"2021-01-12T07:51:43Z","citation":{"chicago":"Janovjak, Harald L, Daniel Mueller, and Andrew Humphris. “Molecular Force Modulation Spectroscopy Revealing the Dynamic Response of Single Bacteriorhodopsins.” <i>Biophysical Journal</i>. Biophysical Society, 2005. <a href=\"https://doi.org/10.1529/biophysj.104.052746\">https://doi.org/10.1529/biophysj.104.052746</a>.","apa":"Janovjak, H. L., Mueller, D., &#38; Humphris, A. (2005). Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins. <i>Biophysical Journal</i>. Biophysical Society. <a href=\"https://doi.org/10.1529/biophysj.104.052746\">https://doi.org/10.1529/biophysj.104.052746</a>","short":"H.L. Janovjak, D. Mueller, A. Humphris, Biophysical Journal 88 (2005) 1423–1431.","mla":"Janovjak, Harald L., et al. “Molecular Force Modulation Spectroscopy Revealing the Dynamic Response of Single Bacteriorhodopsins.” <i>Biophysical Journal</i>, vol. 88, no. 2, Biophysical Society, 2005, pp. 1423–31, doi:<a href=\"https://doi.org/10.1529/biophysj.104.052746\">10.1529/biophysj.104.052746</a>.","ista":"Janovjak HL, Mueller D, Humphris A. 2005. Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins. Biophysical Journal. 88(2), 1423–1431.","ieee":"H. L. Janovjak, D. Mueller, and A. Humphris, “Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins,” <i>Biophysical Journal</i>, vol. 88, no. 2. Biophysical Society, pp. 1423–1431, 2005.","ama":"Janovjak HL, Mueller D, Humphris A. Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins. <i>Biophysical Journal</i>. 2005;88(2):1423-1431. doi:<a href=\"https://doi.org/10.1529/biophysj.104.052746\">10.1529/biophysj.104.052746</a>"},"title":"Molecular force modulation spectroscopy revealing the dynamic response of single bacteriorhodopsins","year":"2005"},{"quality_controlled":0,"page":"18297 - 18302","author":[{"last_name":"Slonim","full_name":"Slonim,N.","first_name":"N."},{"full_name":"Atwal,G.","first_name":"G.","last_name":"Atwal"},{"first_name":"Gasper","orcid":"0000-0002-6699-1455","full_name":"Gasper Tkacik","last_name":"Tkacik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Bialek","first_name":"William","full_name":"Bialek, William S"}],"abstract":[{"lang":"eng","text":"In an age of increasingly large data sets, investigators in many different disciplines have turned to clustering as a tool for data analysis and exploration. Existing clustering methods, however, typically depend on several nontrivial assumptions about the structure of data. Here, we reformulate the clustering problem from an information theoretic perspective that avoids many of these assumptions. In particular, our formulation obviates the need for defining a cluster &quot;prototype,&quot; does not require an a priori similarity metric, is invariant to changes in the representation of the data, and naturally captures nonlinear relations. We apply this approach to different domains and find that it consistently produces clusters that are more coherent than those extracted by existing algorithms. Finally, our approach provides a way of clustering based on collective notions of similarity rather than the traditional pairwise measures."}],"_id":"3741","status":"public","month":"12","intvolume":"       102","publication_status":"published","issue":"51","year":"2005","title":"Information-based clustering","citation":{"short":"N. Slonim, G. Atwal, G. Tkačik, W. Bialek, PNAS 102 (2005) 18297–18302.","mla":"Slonim, N., et al. “Information-Based Clustering.” <i>PNAS</i>, vol. 102, no. 51, National Academy of Sciences, 2005, pp. 18297–302, doi:<a href=\"https://doi.org/10.1073/pnas.0507432102\">10.1073/pnas.0507432102</a>.","apa":"Slonim, N., Atwal, G., Tkačik, G., &#38; Bialek, W. (2005). Information-based clustering. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.0507432102\">https://doi.org/10.1073/pnas.0507432102</a>","chicago":"Slonim, N., G. Atwal, Gašper Tkačik, and William Bialek. “Information-Based Clustering.” <i>PNAS</i>. National Academy of Sciences, 2005. <a href=\"https://doi.org/10.1073/pnas.0507432102\">https://doi.org/10.1073/pnas.0507432102</a>.","ama":"Slonim N, Atwal G, Tkačik G, Bialek W. Information-based clustering. <i>PNAS</i>. 2005;102(51):18297-18302. doi:<a href=\"https://doi.org/10.1073/pnas.0507432102\">10.1073/pnas.0507432102</a>","ieee":"N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Information-based clustering,” <i>PNAS</i>, vol. 102, no. 51. National Academy of Sciences, pp. 18297–18302, 2005.","ista":"Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Information-based clustering. PNAS. 102(51), 18297–18302."},"date_updated":"2021-01-12T07:51:52Z","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1317937","open_access":"1"}],"publisher":"National Academy of Sciences","publication":"PNAS","day":"20","oa":1,"date_created":"2018-12-11T12:04:55Z","type":"journal_article","volume":102,"publist_id":"2490","date_published":"2005-12-20T00:00:00Z","doi":"10.1073/pnas.0507432102","extern":1},{"abstract":[{"lang":"eng","text":"We address the practical problems of estimating the information relations that characterize large networks. Building on methods developed for analysis of the neural code, we show that reliable estimates of mutual information can be obtained with manageable computational effort. The same methods allow estimation of higher order, multi-information terms. These ideas are illustrated by analyses of gene expression, financial markets, and consumer preferences. In each case, information theoretic measures correlate with independent, intuitive measures of the underlying structures in the system."}],"quality_controlled":0,"author":[{"first_name":"Noam","full_name":"Slonim,Noam","last_name":"Slonim"},{"last_name":"Atwal","full_name":"Atwal,Gurinder S","first_name":"Gurinder"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik","orcid":"0000-0002-6699-1455","full_name":"Gasper Tkacik","first_name":"Gasper"},{"first_name":"William","full_name":"Bialek, William S","last_name":"Bialek"}],"page":"1 - 11","status":"public","_id":"3746","publication_status":"published","month":"02","publisher":"ArXiv","publication":"ArXiv","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/cs/0502017v1"}],"oa":1,"day":"03","year":"2005","title":"Estimating mutual information and multi-information in large networks","date_updated":"2021-01-12T07:51:54Z","citation":{"ieee":"N. Slonim, G. Atwal, G. Tkačik, and W. Bialek, “Estimating mutual information and multi-information in large networks,” <i>ArXiv</i>. ArXiv, pp. 1–11, 2005.","ama":"Slonim N, Atwal G, Tkačik G, Bialek W. Estimating mutual information and multi-information in large networks. <i>ArXiv</i>. 2005:1-11.","ista":"Slonim N, Atwal G, Tkačik G, Bialek W. 2005. Estimating mutual information and multi-information in large networks. ArXiv, 1–11, .","apa":"Slonim, N., Atwal, G., Tkačik, G., &#38; Bialek, W. (2005). Estimating mutual information and multi-information in large networks. <i>ArXiv</i>. ArXiv.","short":"N. Slonim, G. Atwal, G. Tkačik, W. Bialek, ArXiv (2005) 1–11.","mla":"Slonim, Noam, et al. “Estimating Mutual Information and Multi-Information in Large Networks.” <i>ArXiv</i>, ArXiv, 2005, pp. 1–11.","chicago":"Slonim, Noam, Gurinder Atwal, Gašper Tkačik, and William Bialek. “Estimating Mutual Information and Multi-Information in Large Networks.” <i>ArXiv</i>. ArXiv, 2005."},"date_published":"2005-02-03T00:00:00Z","extern":1,"type":"preprint","date_created":"2018-12-11T12:04:56Z","publist_id":"2484"},{"abstract":[{"text":"Characterizing the dynamics of specific RNA levels requires real-time RNA profiling in a single cell. We show that the combination of a synthetic modular genetic system with fluorescence correlation spectroscopy allows us to directly measure in real time the activity of any specific promoter in prokaryotes. Using a simple inducible gene expression system, we found that induced RNA levels within a single bacterium of Escherichia coli exhibited a pulsating profile in response to a steady input of inducer. The genetic deletion of an efflux pump system, a key determinant of antibiotic resistance, altered the pulsating transcriptional dynamics and caused overexpression of induced RNA. In contrast with population measurements, real-time RNA profiling permits identifying relationships between genotypes and transcriptional dynamics that are accessible only at the level of the single cell.","lang":"eng"}],"acknowledgement":"4237","author":[{"last_name":"Le","first_name":"Thuc","full_name":"Le,Thuc T."},{"first_name":"Sébastien","full_name":"Harlepp, Sébastien","last_name":"Harlepp"},{"first_name":"Calin C","full_name":"Calin Guet","orcid":"0000-0001-6220-2052","last_name":"Guet","id":"47F8433E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Dittmar,Kimberly","first_name":"Kimberly","last_name":"Dittmar"},{"first_name":"Thierry","full_name":"Emonet,Thierry","last_name":"Emonet"},{"last_name":"Pan","first_name":"Tao","full_name":"Pan,Tao"},{"full_name":"Cluzel,Philippe","first_name":"Philippe","last_name":"Cluzel"}],"page":"9160 - 9164","quality_controlled":0,"issue":"26","publication_status":"published","intvolume":"       102","month":"01","status":"public","_id":"3753","day":"01","publisher":"National Academy of Sciences","publication":"PNAS","date_updated":"2021-01-12T07:51:57Z","citation":{"apa":"Le, T., Harlepp, S., Guet, C. C., Dittmar, K., Emonet, T., Pan, T., &#38; Cluzel, P. (2005). Real-time RNA profiling within a single bacterium. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.0503311102\">https://doi.org/10.1073/pnas.0503311102</a>","short":"T. Le, S. Harlepp, C.C. Guet, K. Dittmar, T. Emonet, T. Pan, P. Cluzel, PNAS 102 (2005) 9160–9164.","mla":"Le, Thuc, et al. “Real-Time RNA Profiling within a Single Bacterium.” <i>PNAS</i>, vol. 102, no. 26, National Academy of Sciences, 2005, pp. 9160–64, doi:<a href=\"https://doi.org/10.1073/pnas.0503311102\">10.1073/pnas.0503311102</a>.","chicago":"Le, Thuc, Sébastien Harlepp, Calin C Guet, Kimberly Dittmar, Thierry Emonet, Tao Pan, and Philippe Cluzel. “Real-Time RNA Profiling within a Single Bacterium.” <i>PNAS</i>. National Academy of Sciences, 2005. <a href=\"https://doi.org/10.1073/pnas.0503311102\">https://doi.org/10.1073/pnas.0503311102</a>.","ieee":"T. Le <i>et al.</i>, “Real-time RNA profiling within a single bacterium,” <i>PNAS</i>, vol. 102, no. 26. National Academy of Sciences, pp. 9160–9164, 2005.","ama":"Le T, Harlepp S, Guet CC, et al. Real-time RNA profiling within a single bacterium. <i>PNAS</i>. 2005;102(26):9160-9164. doi:<a href=\"https://doi.org/10.1073/pnas.0503311102\">10.1073/pnas.0503311102</a>","ista":"Le T, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. 2005. Real-time RNA profiling within a single bacterium. PNAS. 102(26), 9160–9164."},"year":"2005","title":"Real-time RNA profiling within a single bacterium","extern":1,"doi":"10.1073/pnas.0503311102","date_published":"2005-01-01T00:00:00Z","publist_id":"2476","volume":102,"type":"journal_article","date_created":"2018-12-11T12:04:59Z"},{"citation":{"mla":"Shi, Lin, et al. “Controllable Motion Synthesis in a Gaseous Medium.” <i>The Visual Computer</i>, vol. 21, no. 7, Springer, 2005, pp. 474–87, doi:<a href=\"https://doi.org/10.1007/s00371-005-0296-0\">10.1007/s00371-005-0296-0</a>.","short":"L. Shi, Y. Yu, C. Wojtan, S. Chenney, The Visual Computer 21 (2005) 474–487.","apa":"Shi, L., Yu, Y., Wojtan, C., &#38; Chenney, S. (2005). Controllable motion synthesis in a gaseous medium. <i>The Visual Computer</i>. Springer. <a href=\"https://doi.org/10.1007/s00371-005-0296-0\">https://doi.org/10.1007/s00371-005-0296-0</a>","chicago":"Shi, Lin, Yizhou Yu, Chris Wojtan, and Stephen Chenney. “Controllable Motion Synthesis in a Gaseous Medium.” <i>The Visual Computer</i>. Springer, 2005. <a href=\"https://doi.org/10.1007/s00371-005-0296-0\">https://doi.org/10.1007/s00371-005-0296-0</a>.","ieee":"L. Shi, Y. Yu, C. Wojtan, and S. Chenney, “Controllable motion synthesis in a gaseous medium,” <i>The Visual Computer</i>, vol. 21, no. 7. Springer, pp. 474–487, 2005.","ama":"Shi L, Yu Y, Wojtan C, Chenney S. Controllable motion synthesis in a gaseous medium. <i>The Visual Computer</i>. 2005;21(7):474-487. doi:<a href=\"https://doi.org/10.1007/s00371-005-0296-0\">10.1007/s00371-005-0296-0</a>","ista":"Shi L, Yu Y, Wojtan C, Chenney S. 2005. Controllable motion synthesis in a gaseous medium. The Visual Computer. 21(7), 474–487."},"date_updated":"2023-02-23T11:41:36Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Controllable motion synthesis in a gaseous medium","year":"2005","day":"01","publication":"The Visual Computer","publisher":"Springer","volume":21,"publist_id":"2465","type":"journal_article","date_created":"2018-12-11T12:05:02Z","extern":"1","doi":"10.1007/s00371-005-0296-0","date_published":"2005-08-01T00:00:00Z","author":[{"last_name":"Shi","full_name":"Shi, Lin","first_name":"Lin"},{"last_name":"Yu","full_name":"Yu, Yizhou","first_name":"Yizhou"},{"orcid":"0000-0001-6646-5546","full_name":"Wojtan, Christopher J","first_name":"Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","last_name":"Wojtan"},{"full_name":"Chenney, Stephen","first_name":"Stephen","last_name":"Chenney"}],"page":"474 - 487","abstract":[{"text":"The generation of realistic motion satisfying user-defined requirements is one of the most important goals of computer animation. Our aim in this paper is the synthesis of realistic, controllable motion for lightweight natural objects in a gaseous medium. We formulate this problem as a large-scale spacetime optimization with user controls and fluid motion equations as constraints. We have devised novel and effective methods to make this large optimization tractable. Initial trajectories are generated with data-driven synthesis based on stylistic motion planning. Smoothed particle hydrodynamics (SPH) is used during optimization to produce fluid simulations at a reasonable computational cost, while interesting vortex-based fluid motion is generated by recording the presence of vortices in the initial trajectories and maintaining them through optimization. Object rotations are refined as a postprocess to enhance the visual quality of the results. We demonstrate our techniques on a number of animations involving single or multiple objects.","lang":"eng"}],"article_processing_charge":"No","intvolume":"        21","month":"08","publication_status":"published","language":[{"iso":"eng"}],"status":"public","oa_version":"None","_id":"3763","issue":"7"},{"date_published":"2005-01-01T00:00:00Z","doi":"10.1016/j.neuron.2004.12.048 ","extern":1,"date_created":"2018-12-11T12:05:17Z","type":"journal_article","publist_id":"2400","volume":45,"publication":"Neuron","publisher":"Elsevier","day":"01","year":"2005","title":"Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons","citation":{"ieee":"D. Engel and P. M. Jonas, “Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons,” <i>Neuron</i>, vol. 45, no. 3. Elsevier, pp. 405–17, 2005.","ama":"Engel D, Jonas PM. Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. <i>Neuron</i>. 2005;45(3):405-417. doi:<a href=\"https://doi.org/10.1016/j.neuron.2004.12.048 \">10.1016/j.neuron.2004.12.048 </a>","ista":"Engel D, Jonas PM. 2005. Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron. 45(3), 405–17.","apa":"Engel, D., &#38; Jonas, P. M. (2005). Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2004.12.048 \">https://doi.org/10.1016/j.neuron.2004.12.048 </a>","short":"D. Engel, P.M. Jonas, Neuron 45 (2005) 405–17.","mla":"Engel, Dominique, and Peter M. Jonas. “Presynaptic Action Potential Amplification by Voltage-Gated Na+ Channels in Hippocampal Mossy Fiber Boutons.” <i>Neuron</i>, vol. 45, no. 3, Elsevier, 2005, pp. 405–17, doi:<a href=\"https://doi.org/10.1016/j.neuron.2004.12.048 \">10.1016/j.neuron.2004.12.048 </a>.","chicago":"Engel, Dominique, and Peter M Jonas. “Presynaptic Action Potential Amplification by Voltage-Gated Na+ Channels in Hippocampal Mossy Fiber Boutons.” <i>Neuron</i>. Elsevier, 2005. <a href=\"https://doi.org/10.1016/j.neuron.2004.12.048 \">https://doi.org/10.1016/j.neuron.2004.12.048 </a>."},"date_updated":"2021-01-12T07:52:21Z","issue":"3","_id":"3808","status":"public","month":"01","publication_status":"published","intvolume":"        45","abstract":[{"text":"Action potentials in central neurons are initiated near the axon initial segment, propagate into the axon, and finally invade the presynaptic terminals, where they trigger transmitter release. Voltage-gated Na(+) channels are key determinants of excitability, but Na(+) channel density and properties in axons and presynaptic terminals of cortical neurons have not been examined yet. In hippocampal mossy fiber boutons, which emerge from parent axons en passant, Na(+) channels are very abundant, with an estimated number of approximately 2000 channels per bouton. Presynaptic Na(+) channels show faster inactivation kinetics than somatic channels, suggesting differences between subcellular compartments of the same cell. Computational analysis of action potential propagation in axon-multibouton structures reveals that Na(+) channels in boutons preferentially amplify the presynaptic action potential and enhance Ca(2+) inflow, whereas Na(+) channels in axons control the reliability and speed of propagation. Thus, presynaptic and axonal Na(+) channels contribute differentially to mossy fiber synaptic transmission.","lang":"eng"}],"quality_controlled":0,"page":"405 - 17","author":[{"last_name":"Engel","first_name":"Dominique","full_name":"Engel, Dominique"},{"last_name":"Jonas","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","first_name":"Peter M","orcid":"0000-0001-5001-4804","full_name":"Peter Jonas"}]},{"date_updated":"2019-04-26T07:22:35Z","citation":{"ista":"Hefft S, Jonas PM. 2005. Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review). Nature Neuroscience. 8(10), 1319–28.","ieee":"S. Hefft and P. M. Jonas, “Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review),” <i>Nature Neuroscience</i>, vol. 8, no. 10. Nature Publishing Group, pp. 1319–28, 2005.","ama":"Hefft S, Jonas PM. Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review). <i>Nature Neuroscience</i>. 2005;8(10):1319-1328. doi:<a href=\"https://doi.org/10.1038/nn1542\">10.1038/nn1542</a>","chicago":"Hefft, Stefan, and Peter M Jonas. “Asynchronous GABA Release Generates Long-Lasting Inhibition at a Hippocampal Interneuron-Principal Neuron Synapse (Review).” <i>Nature Neuroscience</i>. Nature Publishing Group, 2005. <a href=\"https://doi.org/10.1038/nn1542\">https://doi.org/10.1038/nn1542</a>.","apa":"Hefft, S., &#38; Jonas, P. M. (2005). Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review). <i>Nature Neuroscience</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nn1542\">https://doi.org/10.1038/nn1542</a>","mla":"Hefft, Stefan, and Peter M. Jonas. “Asynchronous GABA Release Generates Long-Lasting Inhibition at a Hippocampal Interneuron-Principal Neuron Synapse (Review).” <i>Nature Neuroscience</i>, vol. 8, no. 10, Nature Publishing Group, 2005, pp. 1319–28, doi:<a href=\"https://doi.org/10.1038/nn1542\">10.1038/nn1542</a>.","short":"S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28."},"title":"Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review)","year":"2005","day":"01","publisher":"Nature Publishing Group","publication":"Nature Neuroscience","volume":8,"publist_id":"2399","date_created":"2018-12-11T12:05:18Z","type":"review","doi":"10.1038/nn1542","extern":1,"date_published":"2005-01-01T00:00:00Z","page":"1319 - 28","author":[{"last_name":"Hefft","first_name":"Stefan","full_name":"Hefft, Stefan"},{"id":"353C1B58-F248-11E8-B48F-1D18A9856A87","last_name":"Jonas","orcid":"0000-0001-5001-4804","full_name":"Peter Jonas","first_name":"Peter M"}],"quality_controlled":0,"abstract":[{"lang":"eng","text":"Hippocampal GABAergic interneurons show diverse molecular and morphological properties. The functional significance of this diversity for information processing is poorly understood. Here we show that cholecystokinin (CCK)-expressing interneurons in rat dentate gyrus release GABA in a highly asynchronous manner, in contrast to parvalbumin (PV) interneurons. With a gamma-frequency burst of ten action potentials, the ratio of asynchronous to synchronous release is 3:1 in CCK interneurons but is 1:5 in parvalbumin interneurons. N-type channels trigger synchronous and asynchronous release in CCK interneuron synapses, whereas P/Q-type Ca(2+) channels mediate release at PV interneuron synapses. Effects of Ca(2+) chelators suggest that both a long-lasting presynaptic Ca(2+) transient and a large distance between Ca(2+) source and sensor of exocytosis contribute to the higher ratio of asynchronous to synchronous release in CCK interneuron synapses. Asynchronous release occurs at physiological temperature and with behaviorally relevant stimulation patterns, thus generating long-lasting inhibition in the brain."}],"month":"01","publication_status":"published","intvolume":"         8","_id":"3812","status":"public","issue":"10"},{"publication_status":"published","month":"09","intvolume":"      3657","status":"public","_id":"3892","conference":{"name":"FMCO: Formal Methods for Components and Objects"},"author":[{"full_name":"Krishnendu Chatterjee","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","full_name":"Thomas Henzinger","orcid":"0000−0002−2985−7724","first_name":"Thomas A"},{"first_name":"Marcin","full_name":"Jurdziński, Marcin","last_name":"Jurdziński"}],"page":"141 - 161","quality_controlled":0,"abstract":[{"text":"In 2-player non-zero-sum games, Nash equilibria capture the options for rational behavior if each player attempts to maximize her payoff. In contrast to classical game theory, we consider lexicographic objectives: first, each player tries to maximize her own payoff, and then, the player tries to minimize the opponent's payoff. Such objectives arise naturally in the verification of systems with multiple components. There, instead of proving that each component satisfies its specification no matter how the other components behave, it often suffices to prove that each component satisfies its specification provided that the other components satisfy their specifications. We say that a Nash equilibrium is secure if it is an equilibrium with respect to the lexicographic objectives of both players. We prove that in graph games with Borel winning conditions, which include the games that arise in verification, there may be several Nash equilibria, but there is always a unique maximal payoff profile of a secure equilibrium. We show how this equilibrium can be computed in the case of omega-regular winning conditions, and we characterize the memory requirements of strategies that achieve the equilibrium.","lang":"eng"}],"alternative_title":["LNCS"],"acknowledgement":"This research was supported in part by the ONR grant N00014-02-1-0671, the AFOSR MURI grant F49620-00-1-0327, and the NSF grant CCR-0225610.\nThis is an extended version of the paper “Games with Secure Equilibria” that appeared in the proceedings of Logic in Computer Science (LICS), 2004.","publist_id":"2269","volume":3657,"type":"conference","date_created":"2018-12-11T12:05:44Z","extern":1,"doi":"10.1007/11561163_7","date_published":"2005-09-19T00:00:00Z","citation":{"chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, and Marcin Jurdziński. “Games with Secure Equilibria,” 3657:141–61. Springer, 2005. <a href=\"https://doi.org/10.1007/11561163_7\">https://doi.org/10.1007/11561163_7</a>.","apa":"Chatterjee, K., Henzinger, T. A., &#38; Jurdziński, M. (2005). Games with secure equilibria (Vol. 3657, pp. 141–161). Presented at the FMCO: Formal Methods for Components and Objects, Springer. <a href=\"https://doi.org/10.1007/11561163_7\">https://doi.org/10.1007/11561163_7</a>","mla":"Chatterjee, Krishnendu, et al. <i>Games with Secure Equilibria</i>. Vol. 3657, Springer, 2005, pp. 141–61, doi:<a href=\"https://doi.org/10.1007/11561163_7\">10.1007/11561163_7</a>.","short":"K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, Springer, 2005, pp. 141–161.","ista":"Chatterjee K, Henzinger TA, Jurdziński M. 2005. Games with secure equilibria. FMCO: Formal Methods for Components and Objects, LNCS, vol. 3657, 141–161.","ama":"Chatterjee K, Henzinger TA, Jurdziński M. Games with secure equilibria. In: Vol 3657. Springer; 2005:141-161. doi:<a href=\"https://doi.org/10.1007/11561163_7\">10.1007/11561163_7</a>","ieee":"K. Chatterjee, T. A. Henzinger, and M. Jurdziński, “Games with secure equilibria,” presented at the FMCO: Formal Methods for Components and Objects, 2005, vol. 3657, pp. 141–161."},"date_updated":"2021-01-12T07:53:00Z","year":"2005","title":"Games with secure equilibria","day":"19","publisher":"Springer"},{"year":"2005","title":"Two-player nonzero-sum ω-regular games","date_updated":"2021-01-12T07:53:00Z","citation":{"chicago":"Chatterjee, Krishnendu. “Two-Player Nonzero-Sum ω-Regular Games,” 3653:413–27. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005. <a href=\"https://doi.org/10.1007/11539452_32\">https://doi.org/10.1007/11539452_32</a>.","apa":"Chatterjee, K. (2005). Two-player nonzero-sum ω-regular games (Vol. 3653, pp. 413–427). Presented at the CONCUR: Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.1007/11539452_32\">https://doi.org/10.1007/11539452_32</a>","mla":"Chatterjee, Krishnendu. <i>Two-Player Nonzero-Sum ω-Regular Games</i>. Vol. 3653, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 413–27, doi:<a href=\"https://doi.org/10.1007/11539452_32\">10.1007/11539452_32</a>.","short":"K. Chatterjee, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 413–427.","ista":"Chatterjee K. 2005. Two-player nonzero-sum ω-regular games. CONCUR: Concurrency Theory, LNCS , vol. 3653, 413–427.","ieee":"K. Chatterjee, “Two-player nonzero-sum ω-regular games,” presented at the CONCUR: Concurrency Theory, 2005, vol. 3653, pp. 413–427.","ama":"Chatterjee K. Two-player nonzero-sum ω-regular games. In: Vol 3653. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2005:413-427. doi:<a href=\"https://doi.org/10.1007/11539452_32\">10.1007/11539452_32</a>"},"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","day":"05","type":"conference","date_created":"2018-12-11T12:05:44Z","volume":3653,"publist_id":"2267","date_published":"2005-09-05T00:00:00Z","extern":1,"doi":"10.1007/11539452_32","quality_controlled":0,"author":[{"first_name":"Krishnendu","orcid":"0000-0002-4561-241X","full_name":"Krishnendu Chatterjee","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"}],"page":"413 - 427","alternative_title":["LNCS "],"abstract":[{"lang":"eng","text":"We study infinite stochastic games played by two-players on a finite graph with goals specified by sets of infinite traces. The games are concurrent (each player simultaneously and independently chooses an action at each round), stochastic (the next state is determined by a probability distribution depending on the current state and the chosen actions), infinite (the game continues for an infinite number of rounds), nonzero-sum (the players' goals are not necessarily conflicting), and undiscounted. We show that if each player has an W-regular objective expressed as a paxity objective, then there exists an epsilon-Nash equilibrium, for every epsilon &gt; 0. However, exact Nash equilibria need not exist. We study the complexity of finding values (payoff profile) of an epsilon-Nash equilibrium. We show that the values of an epsilon-Nash equilibrium in nonzero-sum concurrent parity games can be computed by solving the following two simpler problems: computing the values of zero-sum (the goals of the players axe strictly conflicting) concurrent parity games and computing epsilon-Nash equilibrium values of nonzero-sum concurrent games with reachability objectives. As a consequence we establish that values of an epsilon-Nash equilibrium can be computed in TFNP (total functional NP), and hence in EXPTIME."}],"status":"public","_id":"3893","publication_status":"published","month":"09","intvolume":"      3653","conference":{"name":"CONCUR: Concurrency Theory"}},{"publisher":"Springer","day":"14","title":"Complexity of compositional model checking of computation tree logic on simple structures","year":"2005","date_updated":"2021-01-12T07:53:02Z","citation":{"ama":"Chatterjee K, Dasgupta P, Chakrabarti P. Complexity of compositional model checking of computation tree logic on simple structures. In: Vol 3326. Springer; 2005:89-102. doi:<a href=\"https://doi.org/10.1007/978-3-540-30536-1_13\">10.1007/978-3-540-30536-1_13</a>","ieee":"K. Chatterjee, P. Dasgupta, and P. Chakrabarti, “Complexity of compositional model checking of computation tree logic on simple structures,” presented at the IWDC: International Workshop on Distributed Computing , 2005, vol. 3326, pp. 89–102.","ista":"Chatterjee K, Dasgupta P, Chakrabarti P. 2005. Complexity of compositional model checking of computation tree logic on simple structures. IWDC: International Workshop on Distributed Computing , LNCS, vol. 3326, 89–102.","mla":"Chatterjee, Krishnendu, et al. <i>Complexity of Compositional Model Checking of Computation Tree Logic on Simple Structures</i>. Vol. 3326, Springer, 2005, pp. 89–102, doi:<a href=\"https://doi.org/10.1007/978-3-540-30536-1_13\">10.1007/978-3-540-30536-1_13</a>.","short":"K. Chatterjee, P. Dasgupta, P. Chakrabarti, in:, Springer, 2005, pp. 89–102.","apa":"Chatterjee, K., Dasgupta, P., &#38; Chakrabarti, P. (2005). Complexity of compositional model checking of computation tree logic on simple structures (Vol. 3326, pp. 89–102). Presented at the IWDC: International Workshop on Distributed Computing , Springer. <a href=\"https://doi.org/10.1007/978-3-540-30536-1_13\">https://doi.org/10.1007/978-3-540-30536-1_13</a>","chicago":"Chatterjee, Krishnendu, Pallab Dasgupta, and Partha Chakrabarti. “Complexity of Compositional Model Checking of Computation Tree Logic on Simple Structures,” 3326:89–102. Springer, 2005. <a href=\"https://doi.org/10.1007/978-3-540-30536-1_13\">https://doi.org/10.1007/978-3-540-30536-1_13</a>."},"date_published":"2005-02-14T00:00:00Z","doi":"10.1007/978-3-540-30536-1_13","extern":1,"date_created":"2018-12-11T12:05:45Z","type":"conference","publist_id":"2261","volume":3326,"acknowledgement":"Pallab Dasgupta and P.P.Chakrabarti thank the Dept. of Science & Tech., Govt. of India, for partial support of this work","alternative_title":["LNCS"],"abstract":[{"text":"Temporal Logic Model Checking is one of the most potent tools for the verification of finite state systems. Computation Tree Logic (CTL) has gained popularity because unlike most other logics, CTL model checking of a single transition system can be achieved in polynomial time. However, in most real-life problems, specially in distributed and parallel systems, the system consist of a set of concurrent processes and the verification problem translates to model check the composition of the component processes. Since explicit composition leads to state explosion, verifying the system without actually composing the components is attractive, even for possibly restrictive class of systems. We show that the problem of compositional CTL model checking is PSPACE complete for the class of systems composed of components that are tree-like transition structure and do not interact among themselves. For the simplest forms of existential and universal CTL formulas model checking turns out to be NP complete and coNP complete, respectively. The results hold for both synchronous and asynchronous composition.","lang":"eng"}],"quality_controlled":0,"page":"89 - 102","author":[{"last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","full_name":"Krishnendu Chatterjee"},{"last_name":"Dasgupta","full_name":"Dasgupta, Pallab","first_name":"Pallab"},{"last_name":"Chakrabarti","first_name":"Partha","full_name":"Chakrabarti, Partha P"}],"conference":{"name":"IWDC: International Workshop on Distributed Computing "},"_id":"3896","status":"public","month":"02","publication_status":"published","intvolume":"      3326"},{"extern":"1","date_published":"2005-09-01T00:00:00Z","publist_id":"2252","date_created":"2018-12-11T12:05:47Z","type":"conference","day":"01","main_file_link":[{"url":"http://www.docstoc.com/docs/15327566/1-The-drawback-of-mobility-invasive-species-in-a-globalised-world"}],"publisher":"Elsevier","date_updated":"2021-01-12T07:53:05Z","citation":{"short":"S. Cremer, J. Boomsma, in:, Elsevier, 2005.","mla":"Cremer, Sylvia, and Jacobus Boomsma. <i>The Drawback of Mobility: Invasive Species in a Globalised World</i>. Elsevier, 2005.","apa":"Cremer, S., &#38; Boomsma, J. (2005). The drawback of mobility: invasive species in a globalised world. Presented at the Marie Curie Conference, Elsevier.","chicago":"Cremer, Sylvia, and Jacobus Boomsma. “The Drawback of Mobility: Invasive Species in a Globalised World.” Elsevier, 2005.","ieee":"S. Cremer and J. Boomsma, “The drawback of mobility: invasive species in a globalised world,” presented at the Marie Curie Conference, 2005.","ama":"Cremer S, Boomsma J. The drawback of mobility: invasive species in a globalised world. In: Elsevier; 2005.","ista":"Cremer S, Boomsma J. 2005. The drawback of mobility: invasive species in a globalised world. Marie Curie Conference."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2005","title":"The drawback of mobility: invasive species in a globalised world","conference":{"name":"Marie Curie Conference"},"language":[{"iso":"eng"}],"publication_status":"published","month":"09","oa_version":"None","_id":"3902","status":"public","author":[{"last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","full_name":"Cremer, Sylvia","orcid":"0000-0002-2193-3868"},{"first_name":"Jacobus","full_name":"Boomsma, Jacobus","last_name":"Boomsma"}]}]