[{"abstract":[{"lang":"eng","text":"An enhanced temperature-index glacier melt model, incorporating incoming shortwave radiation and albedo, is presented. The model is an attempt to combine the high temporal resolution and accuracy of physically based melt models with the lower data requirements and computational simplicity of empirical melt models, represented by the ‘degree-day’ method and its variants. The model is run with both measured and modelled radiation data, to test its applicability to glaciers with differing data availability. Five automatic weather stations were established on Haut Glacier d’Arolla, Switzerland, between May and September 2001. Reference surface melt rates were calculated using a physically based energy-balance melt model. The performance of the enhanced temperature-index model was tested at each of the four validation stations by comparing predicted hourly melt rates with reference melt rates. Predictions made with three other temperature-index models were evaluated in the same way for comparison. The enhanced temperature-index model offers significant improvements over the other temperature-index models, and accounts for 90–95% of the variation in the reference melt rate. The improvement is lower, but still significant, when the model is forced by modelled shortwave radiation data, thus offering a better alternative to existing models that require only temperature data input."}],"publication_status":"published","title":"An enhanced temperature-index glacier melt model including the shortwave radiation balance: Development and testing for Haut Glacier d’Arolla, Switzerland","publisher":"Cambridge University Press","date_published":"2005-10-19T00:00:00Z","citation":{"chicago":"Pellicciotti, Francesca, Ben Brock, Ulrich Strasser, Paolo Burlando, Martin Funk, and Javier Corripio. “An Enhanced Temperature-Index Glacier Melt Model Including the Shortwave Radiation Balance: Development and Testing for Haut Glacier d’Arolla, Switzerland.” <i>Journal of Glaciology</i>. Cambridge University Press, 2005. <a href=\"https://doi.org/10.3189/172756505781829124\">https://doi.org/10.3189/172756505781829124</a>.","ama":"Pellicciotti F, Brock B, Strasser U, Burlando P, Funk M, Corripio J. An enhanced temperature-index glacier melt model including the shortwave radiation balance: Development and testing for Haut Glacier d’Arolla, Switzerland. <i>Journal of Glaciology</i>. 2005;51(175):573-587. doi:<a href=\"https://doi.org/10.3189/172756505781829124\">10.3189/172756505781829124</a>","ista":"Pellicciotti F, Brock B, Strasser U, Burlando P, Funk M, Corripio J. 2005. An enhanced temperature-index glacier melt model including the shortwave radiation balance: Development and testing for Haut Glacier d’Arolla, Switzerland. Journal of Glaciology. 51(175), 573–587.","apa":"Pellicciotti, F., Brock, B., Strasser, U., Burlando, P., Funk, M., &#38; Corripio, J. (2005). An enhanced temperature-index glacier melt model including the shortwave radiation balance: Development and testing for Haut Glacier d’Arolla, Switzerland. <i>Journal of Glaciology</i>. Cambridge University Press. <a href=\"https://doi.org/10.3189/172756505781829124\">https://doi.org/10.3189/172756505781829124</a>","ieee":"F. Pellicciotti, B. Brock, U. Strasser, P. Burlando, M. Funk, and J. Corripio, “An enhanced temperature-index glacier melt model including the shortwave radiation balance: Development and testing for Haut Glacier d’Arolla, Switzerland,” <i>Journal of Glaciology</i>, vol. 51, no. 175. Cambridge University Press, pp. 573–587, 2005.","mla":"Pellicciotti, Francesca, et al. “An Enhanced Temperature-Index Glacier Melt Model Including the Shortwave Radiation Balance: Development and Testing for Haut Glacier d’Arolla, Switzerland.” <i>Journal of Glaciology</i>, vol. 51, no. 175, Cambridge University Press, 2005, pp. 573–87, doi:<a href=\"https://doi.org/10.3189/172756505781829124\">10.3189/172756505781829124</a>.","short":"F. Pellicciotti, B. Brock, U. Strasser, P. Burlando, M. Funk, J. Corripio, Journal of Glaciology 51 (2005) 573–587."},"date_updated":"2023-02-20T08:45:37Z","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","publication":"Journal of Glaciology","intvolume":"        51","oa":1,"year":"2005","day":"19","doi":"10.3189/172756505781829124","page":"573-587","issue":"175","month":"10","article_processing_charge":"No","volume":51,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","first_name":"Francesca"},{"full_name":"Brock, Ben","last_name":"Brock","first_name":"Ben"},{"full_name":"Strasser, Ulrich","last_name":"Strasser","first_name":"Ulrich"},{"full_name":"Burlando, Paolo","first_name":"Paolo","last_name":"Burlando"},{"full_name":"Funk, Martin","first_name":"Martin","last_name":"Funk"},{"full_name":"Corripio, Javier","last_name":"Corripio","first_name":"Javier"}],"_id":"12657","type":"journal_article","article_type":"original","date_created":"2023-02-20T08:18:51Z","status":"public","publication_identifier":{"issn":["0022-1430"],"eissn":["1727-5652"]},"main_file_link":[{"url":"https://doi.org/10.3189/172756505781829124","open_access":"1"}]},{"_id":"1298","type":"journal_article","date_created":"2018-12-11T11:51:13Z","doi":"10.1523/JNEUROSCI.4900-04.2005","day":"11","page":"4766 - 4778","year":"2005","status":"public","acknowledgement":"This work was supported by the Max-Planck-Society.","publication":"Journal of Neuroscience","publist_id":"5975","intvolume":"        25","citation":{"apa":"Reiff, D., Ihring, A., Guerrero, G., Isacoff, E., Jösch, M. A., Nakai, J., &#38; Borst, A. (2005). In vivo performance of genetically encoded indicators of neural activity in flies. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/JNEUROSCI.4900-04.2005\">https://doi.org/10.1523/JNEUROSCI.4900-04.2005</a>","chicago":"Reiff, Dierk, Alexandra Ihring, Giovanna Guerrero, Ehud Isacoff, Maximilian A Jösch, Junichi Nakai, and Alexander Borst. “In Vivo Performance of Genetically Encoded Indicators of Neural Activity in Flies.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2005. <a href=\"https://doi.org/10.1523/JNEUROSCI.4900-04.2005\">https://doi.org/10.1523/JNEUROSCI.4900-04.2005</a>.","ama":"Reiff D, Ihring A, Guerrero G, et al. In vivo performance of genetically encoded indicators of neural activity in flies. <i>Journal of Neuroscience</i>. 2005;25(19):4766-4778. doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.4900-04.2005\">10.1523/JNEUROSCI.4900-04.2005</a>","ista":"Reiff D, Ihring A, Guerrero G, Isacoff E, Jösch MA, Nakai J, Borst A. 2005. In vivo performance of genetically encoded indicators of neural activity in flies. Journal of Neuroscience. 25(19), 4766–4778.","ieee":"D. Reiff <i>et al.</i>, “In vivo performance of genetically encoded indicators of neural activity in flies,” <i>Journal of Neuroscience</i>, vol. 25, no. 19. Society for Neuroscience, pp. 4766–4778, 2005.","short":"D. Reiff, A. Ihring, G. Guerrero, E. Isacoff, M.A. Jösch, J. Nakai, A. Borst, Journal of Neuroscience 25 (2005) 4766–4778.","mla":"Reiff, Dierk, et al. “In Vivo Performance of Genetically Encoded Indicators of Neural Activity in Flies.” <i>Journal of Neuroscience</i>, vol. 25, no. 19, Society for Neuroscience, 2005, pp. 4766–78, doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.4900-04.2005\">10.1523/JNEUROSCI.4900-04.2005</a>."},"extern":1,"quality_controlled":0,"date_updated":"2021-01-12T06:49:42Z","author":[{"full_name":"Reiff, Dierk F","first_name":"Dierk","last_name":"Reiff"},{"full_name":"Ihring, Alexandra","last_name":"Ihring","first_name":"Alexandra"},{"last_name":"Guerrero","first_name":"Giovanna","full_name":"Guerrero, Giovanna"},{"full_name":"Isacoff, Ehud Y","first_name":"Ehud","last_name":"Isacoff"},{"last_name":"Jösch","first_name":"Maximilian A","orcid":"0000-0002-3937-1330","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","full_name":"Maximilian Jösch"},{"last_name":"Nakai","first_name":"Junichi","full_name":"Nakai, Junichi"},{"full_name":"Borst, Alexander","last_name":"Borst","first_name":"Alexander"}],"issue":"19","publication_status":"published","month":"03","abstract":[{"text":"Genetically encoded fluorescent probes of neural activity represent new promising tools for systems neuroscience. Here, we present a comparative in vivo analysis of 10 different genetically encoded calcium indicators, as well as the pH-sensitive synapto-pHluorin. We analyzed their fluorescence changes in presynaptic boutons of the Drosophila larval neuromuscular junction. Robust neural activity did not result in any or noteworthy fluorescence changes when Flash-Pericam, Camgaroo-1, and Camgaroo-2 were expressed. However, calculated on the raw data, fractional fluorescence changes up to 18% were reported by synapto-pHluorin, Yellow Cameleon 2.0, 2.3, and 3.3, Inverse-Pericam, GCaMP1.3, GCaMP1.6, and the troponin C-based calcium sensor TN-L15. The response characteristics of all of these indicators differed considerably from each other, with GCaMP1.6 reporting high rates of neural activity with the largest and fastest fluorescence changes. However, GCaMP1.6 suffered from photobleaching, whereas the fluorescence signals of the double-chromophore indicators were in general smaller but more photostable and reproducible, with TN-L15 showing the fastest rise of the signals at lower activity rates. We show for GCaMP1.3 and YC3.3 that an expanded range of neural activity evoked fairly linear fluorescence changes and a corresponding linear increase in the signal-to-noise ratio (SNR). The expression level of the indicator biased the signal kinetics and SNR, whereas the signal amplitude was independent. The presented data will be useful for in vivo experiments with respect to the selection of an appropriate indicator, as well as for the correct interpretation of the optical signals.","lang":"eng"}],"title":"In vivo performance of genetically encoded indicators of neural activity in flies","volume":25,"publisher":"Society for Neuroscience","date_published":"2005-03-11T00:00:00Z"},{"publication":"Biophysical Journal","publist_id":"2985","intvolume":"        88","_id":"3416","type":"journal_article","oa":1,"date_created":"2018-12-11T12:03:13Z","day":"01","year":"2005","status":"public","main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1305525/"}],"page":"37 - 39","doi":"10.1529/biophysj.105.059774","issue":"5","publication_status":"published","month":"05","abstract":[{"text":"In the last decade atomic force microscopy has been used to measure the mechanical stability of single proteins. These force spectroscopy experiments have shown that many water-soluble and membrane proteins unfold via one or more intermediates. Recently, Li and co-workers found a linear correlation between the unfolding force of the native state and the intermediate in fibronectin, which they suggested indicated the presence of a molecular memory or multiple unfolding pathways (1). Here, we apply two independent methods in combination with Monte Carlo simulations to analyze the unfolding of α-helices E and D of bacteriorhodopsin (BR). We show that correlation analysis of unfolding forces is very sensitive to errors in force calibration of the instrument. In contrast, a comparison of relative forces provides a robust measure for the stability of unfolding intermediates. The proposed approach detects three energetically different states of α-helices E and D in trimeric BR. These states are not observed for monomeric BR and indicate that substantial information is hidden in forced unfolding experiments of single proteins.","lang":"eng"}],"volume":88,"title":"Complex stability of single proteins explored by forced unfolding experiments","date_published":"2005-05-01T00:00:00Z","publisher":"Biophysical Society","citation":{"ieee":"H. L. Janovjak, T. Sapra, and D. Mueller, “Complex stability of single proteins explored by forced unfolding experiments,” <i>Biophysical Journal</i>, vol. 88, no. 5. Biophysical Society, pp. 37–39, 2005.","ama":"Janovjak HL, Sapra T, Mueller D. Complex stability of single proteins explored by forced unfolding experiments. <i>Biophysical Journal</i>. 2005;88(5):37-39. doi:<a href=\"https://doi.org/10.1529/biophysj.105.059774\">10.1529/biophysj.105.059774</a>","ista":"Janovjak HL, Sapra T, Mueller D. 2005. Complex stability of single proteins explored by forced unfolding experiments. Biophysical Journal. 88(5), 37–39.","chicago":"Janovjak, Harald L, Tanuj Sapra, and Daniel Mueller. “Complex Stability of Single Proteins Explored by Forced Unfolding Experiments.” <i>Biophysical Journal</i>. Biophysical Society, 2005. <a href=\"https://doi.org/10.1529/biophysj.105.059774\">https://doi.org/10.1529/biophysj.105.059774</a>.","apa":"Janovjak, H. L., Sapra, T., &#38; Mueller, D. (2005). Complex stability of single proteins explored by forced unfolding experiments. <i>Biophysical Journal</i>. Biophysical Society. <a href=\"https://doi.org/10.1529/biophysj.105.059774\">https://doi.org/10.1529/biophysj.105.059774</a>","short":"H.L. Janovjak, T. Sapra, D. Mueller, Biophysical Journal 88 (2005) 37–39.","mla":"Janovjak, Harald L., et al. “Complex Stability of Single Proteins Explored by Forced Unfolding Experiments.” <i>Biophysical Journal</i>, vol. 88, no. 5, Biophysical Society, 2005, pp. 37–39, doi:<a href=\"https://doi.org/10.1529/biophysj.105.059774\">10.1529/biophysj.105.059774</a>."},"extern":1,"quality_controlled":0,"date_updated":"2021-01-12T07:43:19Z","author":[{"orcid":"0000-0002-8023-9315","last_name":"Janovjak","first_name":"Harald L","full_name":"Harald Janovjak","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sapra, Tanuj K","first_name":"Tanuj","last_name":"Sapra"},{"full_name":"Mueller, Daniel J","first_name":"Daniel","last_name":"Mueller"}]},{"publisher":"Wiley-Blackwell","date_published":"2005-05-01T00:00:00Z","title":"Automated alignment and pattern recognition of single-molecule force spectroscopy data","volume":218,"month":"05","publication_status":"published","abstract":[{"text":"Recently, direct measurements of forces stabilizing single proteins or individual receptor–ligand bonds became possible with ultra-sensitive force probe methods like the atomic force microscope (AFM). In force spectroscopy experiments using AFM, a single molecule or receptor–ligand pair is tethered between the tip of a micromachined cantilever and a supporting surface. While the molecule is stretched, forces are measured by the deflection of the cantilever and plotted against extension, yielding a force spectrum characteristic for each biomolecular system. In order to obtain statistically relevant results, several hundred to thousand single-molecule experiments have to be performed, each resulting in a unique force spectrum. We developed software and algorithms to analyse large numbers of force spectra. Our algorithms include the fitting polymer extension models to force peaks as well as the automatic alignment of spectra. The aligned spectra allowed recognition of patterns of peaks across different spectra. We demonstrate the capabilities of our software by analysing force spectra that were recorded by unfolding single transmembrane proteins such as bacteriorhodopsin and NhaA. Different unfolding pathways were detected by classifying peak patterns. Deviant spectra, e.g. those with no attachment or erratic peaks, can be easily identified. The software is based on the programming language C++, the GNU Scientific Library (GSL), the software WaveMetrics IGOR Pro and available open-source at http://bioinformatics.org/fskit/.","lang":"eng"}],"issue":"2","author":[{"full_name":"Kuhn, Michael","last_name":"Kuhn","first_name":"Michael"},{"last_name":"Janovjak","first_name":"Harald L","orcid":"0000-0002-8023-9315","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","full_name":"Harald Janovjak"},{"full_name":"Hubain, Maurice","last_name":"Hubain","first_name":"Maurice"},{"full_name":"Mueller, Daniel J","first_name":"Daniel","last_name":"Mueller"}],"extern":1,"quality_controlled":0,"date_updated":"2021-01-12T07:43:20Z","citation":{"short":"M. Kuhn, H.L. Janovjak, M. Hubain, D. Mueller, Journal of Microscopy 218 (2005) 125–132.","mla":"Kuhn, Michael, et al. “Automated Alignment and Pattern Recognition of Single-Molecule Force Spectroscopy Data.” <i>Journal of Microscopy</i>, vol. 218, no. 2, Wiley-Blackwell, 2005, pp. 125–32, doi:<a href=\"https://doi.org/10.1111/j.1365-2818.2005.01478.x\">10.1111/j.1365-2818.2005.01478.x</a>.","ieee":"M. Kuhn, H. L. Janovjak, M. Hubain, and D. Mueller, “Automated alignment and pattern recognition of single-molecule force spectroscopy data,” <i>Journal of Microscopy</i>, vol. 218, no. 2. Wiley-Blackwell, pp. 125–132, 2005.","chicago":"Kuhn, Michael, Harald L Janovjak, Maurice Hubain, and Daniel Mueller. “Automated Alignment and Pattern Recognition of Single-Molecule Force Spectroscopy Data.” <i>Journal of Microscopy</i>. Wiley-Blackwell, 2005. <a href=\"https://doi.org/10.1111/j.1365-2818.2005.01478.x\">https://doi.org/10.1111/j.1365-2818.2005.01478.x</a>.","ista":"Kuhn M, Janovjak HL, Hubain M, Mueller D. 2005. Automated alignment and pattern recognition of single-molecule force spectroscopy data. Journal of Microscopy. 218(2), 125–132.","ama":"Kuhn M, Janovjak HL, Hubain M, Mueller D. Automated alignment and pattern recognition of single-molecule force spectroscopy data. <i>Journal of Microscopy</i>. 2005;218(2):125-132. doi:<a href=\"https://doi.org/10.1111/j.1365-2818.2005.01478.x\">10.1111/j.1365-2818.2005.01478.x</a>","apa":"Kuhn, M., Janovjak, H. L., Hubain, M., &#38; Mueller, D. (2005). Automated alignment and pattern recognition of single-molecule force spectroscopy data. <i>Journal of Microscopy</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/j.1365-2818.2005.01478.x\">https://doi.org/10.1111/j.1365-2818.2005.01478.x</a>"},"publist_id":"2984","intvolume":"       218","publication":"Journal of Microscopy","status":"public","day":"01","year":"2005","page":"125 - 132","doi":"10.1111/j.1365-2818.2005.01478.x","date_created":"2018-12-11T12:03:13Z","type":"journal_article","_id":"3417"},{"intvolume":"        34","publist_id":"2983","publication":"European Biophysics Journal","doi":"10.1007/s00249-004-0430-3","year":"2005","day":"01","status":"public","page":"91 - 96","date_created":"2018-12-11T12:03:14Z","type":"journal_article","_id":"3418","date_published":"2005-02-01T00:00:00Z","publisher":"Springer","title":"Hydrodynamic effects in fast AFM single molecule force measurements","volume":34,"abstract":[{"text":"Atomic force microscopy (AFM) allows the critical forces that unfold single proteins and rupture individual receptor–ligand bonds to be measured. To derive the shape of the energy landscape, the dynamic strength of the system is probed at different force loading rates. This is usually achieved by varying the pulling speed between a few nm/s and a few mgrm/s, although for a more complete investigation of the kinetic properties higher speeds are desirable. Above 10 mgrm/s, the hydrodynamic drag force acting on the AFM cantilever reaches the same order of magnitude as the molecular forces. This has limited the maximum pulling speed in AFM single-molecule force spectroscopy experiments. Here, we present an approach for considering these hydrodynamic effects, thereby allowing a correct evaluation of AFM force measurements recorded over an extended range of pulling speeds (and thus loading rates). To support and illustrate our theoretical considerations, we experimentally evaluated the mechanical unfolding of a multi-domain protein recorded at 30 mgrm/s pulling speed.","lang":"eng"}],"month":"02","publication_status":"published","issue":"1","author":[{"orcid":"0000-0002-8023-9315","last_name":"Janovjak","first_name":"Harald L","full_name":"Harald Janovjak","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Struckmeier, Jens","last_name":"Struckmeier","first_name":"Jens"},{"full_name":"Mueller, Daniel J","first_name":"Daniel","last_name":"Mueller"}],"date_updated":"2021-01-12T07:43:20Z","quality_controlled":0,"extern":1,"citation":{"ieee":"H. L. Janovjak, J. Struckmeier, and D. Mueller, “Hydrodynamic effects in fast AFM single molecule force measurements,” <i>European Biophysics Journal</i>, vol. 34, no. 1. Springer, pp. 91–96, 2005.","ama":"Janovjak HL, Struckmeier J, Mueller D. Hydrodynamic effects in fast AFM single molecule force measurements. <i>European Biophysics Journal</i>. 2005;34(1):91-96. doi:<a href=\"https://doi.org/10.1007/s00249-004-0430-3\">10.1007/s00249-004-0430-3</a>","ista":"Janovjak HL, Struckmeier J, Mueller D. 2005. Hydrodynamic effects in fast AFM single molecule force measurements. European Biophysics Journal. 34(1), 91–96.","chicago":"Janovjak, Harald L, Jens Struckmeier, and Daniel Mueller. “Hydrodynamic Effects in Fast AFM Single Molecule Force Measurements.” <i>European Biophysics Journal</i>. Springer, 2005. <a href=\"https://doi.org/10.1007/s00249-004-0430-3\">https://doi.org/10.1007/s00249-004-0430-3</a>.","apa":"Janovjak, H. L., Struckmeier, J., &#38; Mueller, D. (2005). Hydrodynamic effects in fast AFM single molecule force measurements. <i>European Biophysics Journal</i>. Springer. <a href=\"https://doi.org/10.1007/s00249-004-0430-3\">https://doi.org/10.1007/s00249-004-0430-3</a>","short":"H.L. Janovjak, J. Struckmeier, D. Mueller, European Biophysics Journal 34 (2005) 91–96.","mla":"Janovjak, Harald L., et al. “Hydrodynamic Effects in Fast AFM Single Molecule Force Measurements.” <i>European Biophysics Journal</i>, vol. 34, no. 1, Springer, 2005, pp. 91–96, doi:<a href=\"https://doi.org/10.1007/s00249-004-0430-3\">10.1007/s00249-004-0430-3</a>."}},{"publication":"Physical Review Letters","intvolume":"        94","publist_id":"2975","arxiv":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/q-bio/0412014"}],"doi":"10.1103/PhysRevLett.94.018103","year":"2005","day":"01","status":"public","type":"journal_article","_id":"3426","date_created":"2018-12-11T12:03:16Z","oa":1,"article_processing_charge":"No","volume":94,"title":"Robust formation of morphogen gradients","date_published":"2005-01-01T00:00:00Z","language":[{"iso":"eng"}],"publisher":"American Physical Society","issue":"1","abstract":[{"text":"We discuss the formation of graded morphogen profiles in a cell layer by nonlinear transport phenomena, important for patterning developing organisms. We focus on a process termed transcytosis, where morphogen transport results from the binding of ligands to receptors on the cell surface, incorporation into the cell, and subsequent externalization. Starting from a microscopic model, we derive effective transport equations. We show that, in contrast to morphogen transport by extracellular diffusion, transcytosis leads to robust ligand profiles which are insensitive to the rate of ligand production.","lang":"eng"}],"publication_status":"published","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["q-bio/0412014"]},"author":[{"id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","full_name":"Bollenbach, Mark Tobias","last_name":"Bollenbach","first_name":"Mark Tobias","orcid":"0000-0003-4398-476X"},{"first_name":"Karsten","last_name":"Kruse","full_name":"Kruse, Karsten"},{"full_name":"Pantazis, Periklis","first_name":"Periklis","last_name":"Pantazis"},{"full_name":"González Gaitán, Marcos","first_name":"Marcos","last_name":"González Gaitán"},{"full_name":"Jülicher, Frank","last_name":"Jülicher","first_name":"Frank"}],"oa_version":"Preprint","citation":{"apa":"Bollenbach, M. T., Kruse, K., Pantazis, P., González Gaitán, M., &#38; Jülicher, F. (2005). Robust formation of morphogen gradients. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.94.018103\">https://doi.org/10.1103/PhysRevLett.94.018103</a>","chicago":"Bollenbach, Mark Tobias, Karsten Kruse, Periklis Pantazis, Marcos González Gaitán, and Frank Jülicher. “Robust Formation of Morphogen Gradients.” <i>Physical Review Letters</i>. American Physical Society, 2005. <a href=\"https://doi.org/10.1103/PhysRevLett.94.018103\">https://doi.org/10.1103/PhysRevLett.94.018103</a>.","ama":"Bollenbach MT, Kruse K, Pantazis P, González Gaitán M, Jülicher F. Robust formation of morphogen gradients. <i>Physical Review Letters</i>. 2005;94(1). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.94.018103\">10.1103/PhysRevLett.94.018103</a>","ista":"Bollenbach MT, Kruse K, Pantazis P, González Gaitán M, Jülicher F. 2005. Robust formation of morphogen gradients. Physical Review Letters. 94(1).","ieee":"M. T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, and F. Jülicher, “Robust formation of morphogen gradients,” <i>Physical Review Letters</i>, vol. 94, no. 1. American Physical Society, 2005.","short":"M.T. Bollenbach, K. Kruse, P. Pantazis, M. González Gaitán, F. Jülicher, Physical Review Letters 94 (2005).","mla":"Bollenbach, Mark Tobias, et al. “Robust Formation of Morphogen Gradients.” <i>Physical Review Letters</i>, vol. 94, no. 1, American Physical Society, 2005, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.94.018103\">10.1103/PhysRevLett.94.018103</a>."},"date_updated":"2021-01-12T07:43:23Z","extern":"1"},{"editor":[{"full_name":"Nielsen, Rasmus","last_name":"Nielsen","first_name":"Rasmus"}],"publication":"Statistical methods in Molecular Evolution","publist_id":"2967","_id":"3433","type":"book_chapter","date_created":"2018-12-11T12:03:18Z","day":"21","status":"public","year":"2005","doi":"10.1007/0-387-27733-1","page":"439 - 462","month":"04","publication_status":"published","title":"Posterior mapping and posterior predictive distributions","publisher":"Springer","date_published":"2005-04-21T00:00:00Z","citation":{"ieee":"J. P. Bollback, “Posterior mapping and posterior predictive distributions,” in <i>Statistical methods in Molecular Evolution</i>, R. Nielsen, Ed. Springer, 2005, pp. 439–462.","apa":"Bollback, J. P. (2005). Posterior mapping and posterior predictive distributions. In R. Nielsen (Ed.), <i>Statistical methods in Molecular Evolution</i> (pp. 439–462). Springer. <a href=\"https://doi.org/10.1007/0-387-27733-1\">https://doi.org/10.1007/0-387-27733-1</a>","ista":"Bollback JP. 2005.Posterior mapping and posterior predictive distributions. In: Statistical methods in Molecular Evolution. , 439–462.","ama":"Bollback JP. Posterior mapping and posterior predictive distributions. In: Nielsen R, ed. <i>Statistical Methods in Molecular Evolution</i>. Springer; 2005:439-462. doi:<a href=\"https://doi.org/10.1007/0-387-27733-1\">10.1007/0-387-27733-1</a>","chicago":"Bollback, Jonathan P. “Posterior Mapping and Posterior Predictive Distributions.” In <i>Statistical Methods in Molecular Evolution</i>, edited by Rasmus Nielsen, 439–62. Springer, 2005. <a href=\"https://doi.org/10.1007/0-387-27733-1\">https://doi.org/10.1007/0-387-27733-1</a>.","short":"J.P. Bollback, in:, R. Nielsen (Ed.), Statistical Methods in Molecular Evolution, Springer, 2005, pp. 439–462.","mla":"Bollback, Jonathan P. “Posterior Mapping and Posterior Predictive Distributions.” <i>Statistical Methods in Molecular Evolution</i>, edited by Rasmus Nielsen, Springer, 2005, pp. 439–62, doi:<a href=\"https://doi.org/10.1007/0-387-27733-1\">10.1007/0-387-27733-1</a>."},"date_updated":"2021-01-12T07:43:26Z","quality_controlled":0,"extern":1,"author":[{"last_name":"Bollback","first_name":"Jonathan P","orcid":"0000-0002-4624-4612","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","full_name":"Jonathan Bollback"}]},{"author":[{"last_name":"Klausberger","first_name":"Thomas","full_name":"Klausberger,Thomas"},{"full_name":"Marton,Laszlo F","first_name":"Laszlo","last_name":"Marton"},{"first_name":"Joseph","last_name":"O'Neill","id":"426376DC-F248-11E8-B48F-1D18A9856A87","full_name":"Joseph O'Neill"},{"last_name":"Huck","first_name":"Jojanneke","full_name":"Huck, Jojanneke H"},{"full_name":"Dalezios, Yannis","last_name":"Dalezios","first_name":"Yannis"},{"last_name":"Fuentealba","first_name":"Pablo","full_name":"Fuentealba,Pablo"},{"last_name":"Suen","first_name":"Wai","full_name":"Suen, Wai Yee"},{"first_name":"Edit","last_name":"Papp","full_name":"Papp, Edit Cs"},{"full_name":"Kaneko, Takeshi","first_name":"Takeshi","last_name":"Kaneko"},{"full_name":"Watanabe, Masahiko","last_name":"Watanabe","first_name":"Masahiko"},{"id":"3FA14672-F248-11E8-B48F-1D18A9856A87","full_name":"Jozsef Csicsvari","last_name":"Csicsvari","first_name":"Jozsef L","orcid":"0000-0002-5193-4036"},{"full_name":"Somogyi, Péter","first_name":"Péter","last_name":"Somogyi"}],"date_updated":"2021-01-12T07:43:30Z","extern":1,"quality_controlled":0,"citation":{"mla":"Klausberger, Thomas, et al. “Complementary Roles of Cholecystokinin- and Parvalbumin-Expressing GABAergic Neurons in Hippocampal Network Oscillations.” <i>Journal of Neuroscience</i>, vol. 25, no. 42, Society for Neuroscience, 2005, pp. 9782–93, doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.3269-05.2005\">10.1523/JNEUROSCI.3269-05.2005</a>.","short":"T. Klausberger, L. Marton, J. O’Neill, J. Huck, Y. Dalezios, P. Fuentealba, W. Suen, E. Papp, T. Kaneko, M. Watanabe, J.L. Csicsvari, P. Somogyi, Journal of Neuroscience 25 (2005) 9782–9793.","ieee":"T. Klausberger <i>et al.</i>, “Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations,” <i>Journal of Neuroscience</i>, vol. 25, no. 42. Society for Neuroscience, pp. 9782–9793, 2005.","apa":"Klausberger, T., Marton, L., O’Neill, J., Huck, J., Dalezios, Y., Fuentealba, P., … Somogyi, P. (2005). Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/JNEUROSCI.3269-05.2005\">https://doi.org/10.1523/JNEUROSCI.3269-05.2005</a>","ama":"Klausberger T, Marton L, O’Neill J, et al. Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations. <i>Journal of Neuroscience</i>. 2005;25(42):9782-9793. doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.3269-05.2005\">10.1523/JNEUROSCI.3269-05.2005</a>","chicago":"Klausberger, Thomas, Laszlo Marton, Joseph O’Neill, Jojanneke Huck, Yannis Dalezios, Pablo Fuentealba, Wai Suen, et al. “Complementary Roles of Cholecystokinin- and Parvalbumin-Expressing GABAergic Neurons in Hippocampal Network Oscillations.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2005. <a href=\"https://doi.org/10.1523/JNEUROSCI.3269-05.2005\">https://doi.org/10.1523/JNEUROSCI.3269-05.2005</a>.","ista":"Klausberger T, Marton L, O’Neill J, Huck J, Dalezios Y, Fuentealba P, Suen W, Papp E, Kaneko T, Watanabe M, Csicsvari JL, Somogyi P. 2005. Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations. Journal of Neuroscience. 25(42), 9782–9793."},"publisher":"Society for Neuroscience","date_published":"2005-10-19T00:00:00Z","volume":25,"title":"Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations","abstract":[{"text":"In the hippocampal CA1 area, a relatively homogenous population of pyramidal cells is accompanied by a diversity of GABAergic interneurons. Previously, we found that parvalbumin-expressing basket, axo-axonic, bistratified, and oriens-lacunosum moleculare cells, innervating different domains of pyramidal cells, have distinct firing patterns during network oscillations in vivo. A second family of interneurons, expressing cholecystokinin but not parvalbumin, is known to target the same domains of pyramidal cells as do the parvalbumin cells. To test the temporal activity of these independent and parallel GABAergic inputs, we recorded the precise spike timing of identified cholecystokinin interneurons during hippocampal network oscillations in anesthetized rats and determined their molecular expression profiles and synaptic targets. The cells were cannabinoid receptor type 1 immunopositive. Contrary to the stereotyped firing of parvalbumin interneurons, cholecystokinin-expressing basket and dendrite-innervating cells discharge, on average, with 1.7 ± 2.0 Hz during high-frequency ripple oscillations in an episode-dependent manner. During theta oscillations, cholecystokinin- expressing interneurons fire with 8.8 ± 3.3 Hz at a characteristic time on the ascending phase of theta waves (155 ± 81°), when place cells start firing in freely moving animals. The firing patterns of some interneurons recorded in drug-free behaving rats were similar to cholecystokinin cells in anesthetized animals. Our results demonstrate that cholecystokinin- and parvalbumin-expressing interneurons make different contributions to network oscillations and play distinct roles in different brain states. We suggest that the specific spike timing of cholecystokinin interneurons and their sensitivity to endocannabinoids might contribute to differentiate subgroups of pyramidal cells forming neuronal assemblies, whereas parvalbumin interneurons contribute to synchronizing the entire network. Copyright © 2005 Society for Neuroscience.","lang":"eng"}],"month":"10","publication_status":"published","issue":"42","page":"9782 - 9793","day":"19","doi":"10.1523/JNEUROSCI.3269-05.2005","year":"2005","status":"public","date_created":"2018-12-11T12:03:21Z","_id":"3443","type":"journal_article","intvolume":"        25","publist_id":"2944","publication":"Journal of Neuroscience"},{"article_processing_charge":"No","title":"Methods, apparatus and computer program products for modeling three-dimensional colored objects","date_published":"2005-02-08T00:00:00Z","publication_date":"2005-02-08","abstract":[{"text":"Methods, apparatus and computer program products can generate light weight but highly realistic and accurate colored models of three-dimensional colored objects. The colored model may be generated from a second plurality of points that define a coarse digital representation of the surface and at least one texture map containing information derived from a first plurality of colored points that define a fine digital representation of the surface. This derivation is achieved by mapping points within the texture map to the fine digital representation of the three-dimensional surface. Colored scan data may be used to construct the fine digital representation as a triangulated surface (i.e., triangulation) using a wrapping operation.","lang":"eng"}],"month":"02","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","ipc":"G06T17/20 ; G06T15/04","author":[{"last_name":"Williams","first_name":"Steven","full_name":"Williams, Steven"},{"first_name":"Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","full_name":"Edelsbrunner, Herbert"},{"full_name":"Fu, Ping","last_name":"Fu","first_name":"Ping"}],"applicant":["Raindrop Geomagic, Inc."],"oa_version":"Published Version","citation":{"short":"S. Williams, H. Edelsbrunner, P. Fu, (2005).","mla":"Williams, Steven, et al. <i>Methods, Apparatus and Computer Program Products for Modeling Three-Dimensional Colored Objects</i>. 2005.","ieee":"S. Williams, H. Edelsbrunner, and P. Fu, “Methods, apparatus and computer program products for modeling three-dimensional colored objects.” 2005.","ama":"Williams S, Edelsbrunner H, Fu P. Methods, apparatus and computer program products for modeling three-dimensional colored objects. 2005.","ista":"Williams S, Edelsbrunner H, Fu P. 2005. Methods, apparatus and computer program products for modeling three-dimensional colored objects.","chicago":"Williams, Steven, Herbert Edelsbrunner, and Ping Fu. “Methods, Apparatus and Computer Program Products for Modeling Three-Dimensional Colored Objects,” 2005.","apa":"Williams, S., Edelsbrunner, H., &#38; Fu, P. (2005). Methods, apparatus and computer program products for modeling three-dimensional colored objects."},"date_updated":"2022-01-05T13:59:09Z","extern":"1","publist_id":"2878","ipn":"US6853373B2","day":"08","year":"2005","status":"public","main_file_link":[{"url":"https://patents.google.com/patent/US6853373B2/","open_access":"1"}],"type":"patent","_id":"3509","oa":1,"date_created":"2018-12-11T12:03:42Z"},{"conference":{"name":"SGP: Eurographics Symposium on Geometry processing"},"publist_id":"2828","type":"conference","_id":"3557","date_created":"2018-12-11T12:03:57Z","page":"9 - 11","doi":"http://dx.doi.org/10.2312/SGP/SGP05/009-011","main_file_link":[{"open_access":"0","url":"http://www.cs.duke.edu/~edels/Papers/2005-P-03-SurfaceTiling.pdf"}],"day":"01","status":"public","year":"2005","abstract":[{"text":"A challenging problem in computer-aided geometric design is the decomposition of a surface into four-sided regions that are then represented by NURBS patches. There are various approaches published in the literature and implemented as commercially available software, but all fall short in either automation or quality of the result. At Raindrop Geomagic, we have recently taken a fresh approach based on concepts from Morse theory. This by itself is not a new idea, but we have some novel ingredients that make this work, one being a rational notion of hierarchy that guides the construction of a simplified decomposition sensitive to only the major critical points.","lang":"eng"}],"publication_status":"published","month":"07","title":"Surface tiling with differential topology","date_published":"2005-07-01T00:00:00Z","publisher":"ACM","citation":{"ama":"Edelsbrunner H. Surface tiling with differential topology. In: ACM; 2005:9-11. doi:<a href=\"http://dx.doi.org/10.2312/SGP/SGP05/009-011\">http://dx.doi.org/10.2312/SGP/SGP05/009-011</a>","ista":"Edelsbrunner H. 2005. Surface tiling with differential topology. SGP: Eurographics Symposium on Geometry processing, 9–11.","chicago":"Edelsbrunner, Herbert. “Surface Tiling with Differential Topology,” 9–11. ACM, 2005. <a href=\"http://dx.doi.org/10.2312/SGP/SGP05/009-011\">http://dx.doi.org/10.2312/SGP/SGP05/009-011</a>.","apa":"Edelsbrunner, H. (2005). Surface tiling with differential topology (pp. 9–11). Presented at the SGP: Eurographics Symposium on Geometry processing, ACM. <a href=\"http://dx.doi.org/10.2312/SGP/SGP05/009-011\">http://dx.doi.org/10.2312/SGP/SGP05/009-011</a>","ieee":"H. Edelsbrunner, “Surface tiling with differential topology,” presented at the SGP: Eurographics Symposium on Geometry processing, 2005, pp. 9–11.","short":"H. Edelsbrunner, in:, ACM, 2005, pp. 9–11.","mla":"Edelsbrunner, Herbert. <i>Surface Tiling with Differential Topology</i>. ACM, 2005, pp. 9–11, doi:<a href=\"http://dx.doi.org/10.2312/SGP/SGP05/009-011\">http://dx.doi.org/10.2312/SGP/SGP05/009-011</a>."},"date_updated":"2021-01-12T07:44:17Z","quality_controlled":0,"extern":1,"author":[{"orcid":"0000-0002-9823-6833","first_name":"Herbert","last_name":"Edelsbrunner","full_name":"Herbert Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"}]},{"date_published":"2005-01-01T00:00:00Z","publisher":"ACM","title":"Extraction and simplification of iso-surfaces in tandem","abstract":[{"text":"The tandem algorithm combines the marching cube algorithm for surface extraction and the edge contraction algorithm for surface simplification in lock-step to avoid the costly intermediate step of storing the entire extracted surface triangulation. Beyond this basic strategy, we introduce refinements to prevent artifacts in the resulting triangulation, first, by carefully monitoring the amount of simplification during the process and, second, by driving the simplification toward a compromise between shape approximation and mesh quality. We have implemented the algorithm and used extensive computational experiments to document the effects of various design options and to further fine-tune the algorithm.","lang":"eng"}],"month":"01","publication_status":"published","author":[{"first_name":"Dominique","last_name":"Attali","full_name":"Attali, Dominique"},{"full_name":"Cohen-Steiner, David","last_name":"Cohen Steiner","first_name":"David"},{"full_name":"Herbert Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833","first_name":"Herbert","last_name":"Edelsbrunner"}],"date_updated":"2021-01-12T07:44:18Z","extern":1,"quality_controlled":0,"citation":{"short":"D. Attali, D. Cohen Steiner, H. Edelsbrunner, in:, ACM, 2005, pp. 139–148.","mla":"Attali, Dominique, et al. <i>Extraction and Simplification of Iso-Surfaces in Tandem</i>. ACM, 2005, pp. 139–48.","ieee":"D. Attali, D. Cohen Steiner, and H. Edelsbrunner, “Extraction and simplification of iso-surfaces in tandem,” presented at the SGP: Eurographics Symposium on Geometry processing, 2005, pp. 139–148.","chicago":"Attali, Dominique, David Cohen Steiner, and Herbert Edelsbrunner. “Extraction and Simplification of Iso-Surfaces in Tandem,” 139–48. ACM, 2005.","ista":"Attali D, Cohen Steiner D, Edelsbrunner H. 2005. Extraction and simplification of iso-surfaces in tandem. SGP: Eurographics Symposium on Geometry processing, 139–148.","ama":"Attali D, Cohen Steiner D, Edelsbrunner H. Extraction and simplification of iso-surfaces in tandem. In: ACM; 2005:139-148.","apa":"Attali, D., Cohen Steiner, D., &#38; Edelsbrunner, H. (2005). Extraction and simplification of iso-surfaces in tandem (pp. 139–148). Presented at the SGP: Eurographics Symposium on Geometry processing, ACM."},"conference":{"name":"SGP: Eurographics Symposium on Geometry processing"},"publist_id":"2827","acknowledgement":"Partially supported the generated triangulations. Two questions arise: “how do by NSF grant CCR-00-86013 (BioGeometry).","year":"2005","day":"01","page":"139 - 148","status":"public","main_file_link":[{"open_access":"0","url":"http://dl.acm.org/citation.cfm?id=1281943"}],"date_created":"2018-12-11T12:03:57Z","_id":"3558","type":"conference"},{"citation":{"short":"H. Edelsbrunner, P. Koehl, in:, Combinatorial and Computational Geometry, Cambridge University Press, 2005, pp. 243–275.","mla":"Edelsbrunner, Herbert, and Patrice Koehl. “The Geometry of Biomolecular Solvation.” <i>Combinatorial and Computational Geometry</i>, vol. 52, Cambridge University Press, 2005, pp. 243–75.","ieee":"H. Edelsbrunner and P. Koehl, “The geometry of biomolecular solvation,” in <i>Combinatorial and Computational Geometry</i>, vol. 52, Cambridge University Press, 2005, pp. 243–275.","apa":"Edelsbrunner, H., &#38; Koehl, P. (2005). The geometry of biomolecular solvation. In <i>Combinatorial and Computational Geometry</i> (Vol. 52, pp. 243–275). Cambridge University Press.","ama":"Edelsbrunner H, Koehl P. The geometry of biomolecular solvation. In: <i>Combinatorial and Computational Geometry</i>. Vol 52. Cambridge University Press; 2005:243-275.","chicago":"Edelsbrunner, Herbert, and Patrice Koehl. “The Geometry of Biomolecular Solvation.” In <i>Combinatorial and Computational Geometry</i>, 52:243–75. Cambridge University Press, 2005.","ista":"Edelsbrunner H, Koehl P. 2005.The geometry of biomolecular solvation. In: Combinatorial and Computational Geometry. Mathematical Sciences Research Institute Publications, vol. 52, 243–275."},"date_updated":"2021-01-12T07:44:25Z","quality_controlled":0,"extern":1,"alternative_title":["Mathematical Sciences Research Institute Publications"],"author":[{"full_name":"Herbert Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833","last_name":"Edelsbrunner","first_name":"Herbert"},{"full_name":"Koehl, Patrice","first_name":"Patrice","last_name":"Koehl"}],"abstract":[{"text":"ears of research in biology have established that all cellular functions are deeply connected to the shape and dynamics of their molec- ular actors. As a response, structural molecular biology has emerged as a new line of experimental research focused on revealing the structure of biomolecules. The analysis of these structures has led to the development of computational biology, whose aim is to predict from molecular simulation properties inaccessible to experimental probes.\nHere we focus on the representation of biomolecules used in these sim- ulations, and in particular on the hard sphere models. We review how the geometry of the union of such spheres is used to model their interactions with their environment, and how it has been included in simulations of molecular dynamics.\nIn parallel, we review our own developments in mathematics and com- puter science on understanding the geometry of unions of balls, and their applications in molecular simulation.","lang":"eng"}],"publication_status":"published","month":"08","title":"The geometry of biomolecular solvation","volume":52,"publisher":"Cambridge University Press","date_published":"2005-08-08T00:00:00Z","_id":"3576","type":"book_chapter","date_created":"2018-12-11T12:04:03Z","main_file_link":[{"open_access":"0","url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.117.3732"}],"page":"243 - 275","status":"public","year":"2005","day":"08","publication":"Combinatorial and Computational Geometry","intvolume":"        52","publist_id":"2809"},{"oa_version":"None","citation":{"apa":"Castanon Ortega, I., &#38; Heisenberg, C.-P. J. (2005). Cell migration during zebrafish gastrulation. In D. Wedlich (Ed.), <i>Cell Migration in Development and Disease</i> (pp. 71–105). Wiley-VCH. <a href=\"https://doi.org/10.1002/3527604669\">https://doi.org/10.1002/3527604669</a>","chicago":"Castanon Ortega, Irinka, and Carl-Philipp J Heisenberg. “Cell Migration during Zebrafish Gastrulation.” In <i>Cell Migration in Development and Disease</i>, edited by Doris Wedlich, 71–105. Wiley-VCH, 2005. <a href=\"https://doi.org/10.1002/3527604669\">https://doi.org/10.1002/3527604669</a>.","ista":"Castanon Ortega I, Heisenberg C-PJ. 2005.Cell migration during zebrafish gastrulation. In: Cell Migration in Development and Disease. , 71–105.","ama":"Castanon Ortega I, Heisenberg C-PJ. Cell migration during zebrafish gastrulation. In: Wedlich D, ed. <i>Cell Migration in Development and Disease</i>. Wiley-VCH; 2005:71-105. doi:<a href=\"https://doi.org/10.1002/3527604669\">10.1002/3527604669</a>","ieee":"I. Castanon Ortega and C.-P. J. Heisenberg, “Cell migration during zebrafish gastrulation,” in <i>Cell Migration in Development and Disease</i>, D. Wedlich, Ed. Wiley-VCH, 2005, pp. 71–105.","mla":"Castanon Ortega, Irinka, and Carl-Philipp J. Heisenberg. “Cell Migration during Zebrafish Gastrulation.” <i>Cell Migration in Development and Disease</i>, edited by Doris Wedlich, Wiley-VCH, 2005, pp. 71–105, doi:<a href=\"https://doi.org/10.1002/3527604669\">10.1002/3527604669</a>.","short":"I. Castanon Ortega, C.-P.J. Heisenberg, in:, D. Wedlich (Ed.), Cell Migration in Development and Disease, Wiley-VCH, 2005, pp. 71–105."},"date_updated":"2021-01-12T07:44:29Z","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Castanon Ortega, Irinka","first_name":"Irinka","last_name":"Castanon Ortega"},{"orcid":"0000-0002-0912-4566","first_name":"Carl-Philipp J","last_name":"Heisenberg","full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87"}],"publication_status":"published","month":"03","article_processing_charge":"No","title":"Cell migration during zebrafish gastrulation","date_published":"2005-03-14T00:00:00Z","language":[{"iso":"eng"}],"publisher":"Wiley-VCH","_id":"3588","type":"book_chapter","date_created":"2018-12-11T12:04:07Z","page":"71 - 105","doi":"10.1002/3527604669","year":"2005","status":"public","day":"14","editor":[{"last_name":"Wedlich","first_name":"Doris","full_name":"Wedlich, Doris"}],"publication":"Cell Migration in Development and Disease","publist_id":"2795"},{"doi":"10.1038/npg.els.0001072","day":"23","year":"2005","status":"public","_id":"3589","type":"book_chapter","date_created":"2018-12-11T12:04:07Z","publication":"Encyclopedia of Life Sciences","publist_id":"2794","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Mathias","last_name":"Köppen","full_name":"Köppen, Mathias"},{"id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566"}],"oa_version":"None","citation":{"short":"M. Köppen, C.-P.J. Heisenberg, in:, Encyclopedia of Life Sciences, Wiley-Blackwell, 2005.","mla":"Köppen, Mathias, and Carl-Philipp J. Heisenberg. “Cleavage and Gastrulation in Zebrafish Embryos.” <i>Encyclopedia of Life Sciences</i>, Wiley-Blackwell, 2005, doi:<a href=\"https://doi.org/10.1038/npg.els.0001072\">10.1038/npg.els.0001072</a>.","ieee":"M. Köppen and C.-P. J. Heisenberg, “Cleavage and gastrulation in zebrafish embryos,” in <i>Encyclopedia of Life Sciences</i>, Wiley-Blackwell, 2005.","chicago":"Köppen, Mathias, and Carl-Philipp J Heisenberg. “Cleavage and Gastrulation in Zebrafish Embryos.” In <i>Encyclopedia of Life Sciences</i>. Wiley-Blackwell, 2005. <a href=\"https://doi.org/10.1038/npg.els.0001072\">https://doi.org/10.1038/npg.els.0001072</a>.","ama":"Köppen M, Heisenberg C-PJ. Cleavage and gastrulation in zebrafish embryos. In: <i>Encyclopedia of Life Sciences</i>. Wiley-Blackwell; 2005. doi:<a href=\"https://doi.org/10.1038/npg.els.0001072\">10.1038/npg.els.0001072</a>","ista":"Köppen M, Heisenberg C-PJ. 2005.Cleavage and gastrulation in zebrafish embryos. In: Encyclopedia of Life Sciences. .","apa":"Köppen, M., &#38; Heisenberg, C.-P. J. (2005). Cleavage and gastrulation in zebrafish embryos. In <i>Encyclopedia of Life Sciences</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1038/npg.els.0001072\">https://doi.org/10.1038/npg.els.0001072</a>"},"date_updated":"2021-01-12T07:44:30Z","extern":"1","article_processing_charge":"No","title":"Cleavage and gastrulation in zebrafish embryos","language":[{"iso":"eng"}],"date_published":"2005-09-23T00:00:00Z","publisher":"Wiley-Blackwell","abstract":[{"lang":"eng","text":"During zebrafish gastrulation, the interplay between patterning events and morphogenesis creates an embryo out of a seemingly unstructured blastula stage embryo, an embryo with distinct polarities along its anterior–posterior, dorsoventral and left–right axes at the end of gastrulation."}],"month":"09","publication_status":"published"},{"publication":"Nature Cell Biology","intvolume":"         7","publist_id":"2793","_id":"3590","type":"review","date_created":"2018-12-11T12:04:07Z","doi":"10.1038/ncb0105-19","day":"01","page":"19 - 19","status":"public","year":"2005","acknowledgement":"BOOK REVIEWED - Gastrulation: From Cells to Embryo, Edited by Claudio Stern. Published by Cold Spring Harbor Laboratory Press: 2004. ","issue":"1","publication_status":"published","month":"01","article_processing_charge":"No","volume":7,"title":"A stern view of gastrulation","date_published":"2005-01-01T00:00:00Z","publisher":"Nature Publishing Group","language":[{"iso":"eng"}],"oa_version":"None","citation":{"short":"I. Castanon Ortega, C.-P.J. Heisenberg, Nature Cell Biology 7 (2005) 19–19.","mla":"Castanon Ortega, Irinka, and Carl-Philipp J. Heisenberg. “A Stern View of Gastrulation.” <i>Nature Cell Biology</i>, vol. 7, no. 1, Nature Publishing Group, 2005, pp. 19–19, doi:<a href=\"https://doi.org/10.1038/ncb0105-19\">10.1038/ncb0105-19</a>.","apa":"Castanon Ortega, I., &#38; Heisenberg, C.-P. J. (2005). A stern view of gastrulation. <i>Nature Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncb0105-19\">https://doi.org/10.1038/ncb0105-19</a>","ama":"Castanon Ortega I, Heisenberg C-PJ. A stern view of gastrulation. <i>Nature Cell Biology</i>. 2005;7(1):19-19. doi:<a href=\"https://doi.org/10.1038/ncb0105-19\">10.1038/ncb0105-19</a>","chicago":"Castanon Ortega, Irinka, and Carl-Philipp J Heisenberg. “A Stern View of Gastrulation.” <i>Nature Cell Biology</i>. Nature Publishing Group, 2005. <a href=\"https://doi.org/10.1038/ncb0105-19\">https://doi.org/10.1038/ncb0105-19</a>.","ista":"Castanon Ortega I, Heisenberg C-PJ. 2005. A stern view of gastrulation. Nature Cell Biology. 7(1), 19–19.","ieee":"I. Castanon Ortega and C.-P. J. Heisenberg, “A stern view of gastrulation,” <i>Nature Cell Biology</i>, vol. 7, no. 1. Nature Publishing Group, pp. 19–19, 2005."},"date_updated":"2020-10-07T06:26:47Z","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Castanon Ortega","first_name":"Irinka","full_name":"Castanon Ortega, Irinka"},{"id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566"}]},{"publication":"Heredity","publist_id":"2772","intvolume":"        94","doi":"10.1038/sj.hdy.6800607","day":"01","page":"247 - 257","status":"public","year":"2005","_id":"3611","type":"journal_article","date_created":"2018-12-11T12:04:14Z","volume":94,"title":"Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes","date_published":"2005-02-01T00:00:00Z","publisher":"Nature Publishing Group","issue":"2","month":"02","publication_status":"published","abstract":[{"lang":"eng","text":"We present two novel methods to infer mating patterns from genetic data. They differ from existing statistical methods of parentage inference in that they apply to populations that deviate from Hardy–Weinberg and linkage equilibrium, and so are suited for the study of assortative mating in hybrid zones. The core data set consists of genotypes at several loci for a number of full-sib clutches of unknown parentage. Our inference is based throughout on estimates of allelic associations within and across loci, such as heterozygote deficit and pairwise linkage disequilibrium. In the first method, the most likely parents of a given clutch are determined from the genotypic distribution of the associated adult population, given an explicit model of nonrandom mating. This leads to estimates of the strength of assortment. The second approach is based solely on the offspring genotypes and relies on the fact that a linear relation exists between associations among the offspring and those in the population of breeding pairs. We apply both methods to a sample from the hybrid zone between the fire-bellied toads Bombina bombina and B. variegata (Anura: Disco glossidae) in Croatia. Consistently, both approaches provide no evidence for a departure from random mating, despite adequate statistical power. Instead, B. variegata-like individuals among the adults contributed disproportionately to the offspring cohort, consistent with their preference for the type of breeding habitat in which this study was conducted."}],"author":[{"full_name":"Nürnberger, Beate","first_name":"Beate","last_name":"Nürnberger"},{"orcid":"0000-0002-8548-5240","last_name":"Barton","first_name":"Nicholas H","full_name":"Nicholas Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Kruuk","first_name":"Loeske","full_name":"Kruuk, Loeske E"},{"full_name":"Vines, Timothy H","last_name":"Vines","first_name":"Timothy"}],"citation":{"apa":"Nürnberger, B., Barton, N. H., Kruuk, L., &#38; Vines, T. (2005). Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes. <i>Heredity</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/sj.hdy.6800607\">https://doi.org/10.1038/sj.hdy.6800607</a>","ista":"Nürnberger B, Barton NH, Kruuk L, Vines T. 2005. Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes. Heredity. 94(2), 247–257.","ama":"Nürnberger B, Barton NH, Kruuk L, Vines T. Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes. <i>Heredity</i>. 2005;94(2):247-257. doi:<a href=\"https://doi.org/10.1038/sj.hdy.6800607\">10.1038/sj.hdy.6800607</a>","chicago":"Nürnberger, Beate, Nicholas H Barton, Loeske Kruuk, and Timothy Vines. “Mating Patterns in a Bombina Hybrid Zone: Inferences from Adult and Full Sib Genotypes.” <i>Heredity</i>. Nature Publishing Group, 2005. <a href=\"https://doi.org/10.1038/sj.hdy.6800607\">https://doi.org/10.1038/sj.hdy.6800607</a>.","ieee":"B. Nürnberger, N. H. Barton, L. Kruuk, and T. Vines, “Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes,” <i>Heredity</i>, vol. 94, no. 2. Nature Publishing Group, pp. 247–257, 2005.","short":"B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.","mla":"Nürnberger, Beate, et al. “Mating Patterns in a Bombina Hybrid Zone: Inferences from Adult and Full Sib Genotypes.” <i>Heredity</i>, vol. 94, no. 2, Nature Publishing Group, 2005, pp. 247–57, doi:<a href=\"https://doi.org/10.1038/sj.hdy.6800607\">10.1038/sj.hdy.6800607</a>."},"quality_controlled":0,"extern":1,"date_updated":"2021-01-12T07:44:39Z"},{"abstract":[{"text":"Left-right asymmetry in snails is intriguing because individuals of opposite chirality are either unable to mate or can only mate with difficulty, so could be reproductively isolated from each other. We have therefore investigated chiral evolution in the Japanese land snail genus Euhadra to understand whether changes in chirality have promoted speciation. In particular, we aimed to understand the effect of the maternal inheritance of chirality on reproductive isolation and gene flow. We found that the mitochondrial DNA phylogeny of Euhadra is consistent with a single, relatively ancient evolution of sinistral species and suggests either recent “single-gene speciation” or gene flow between chiral morphs that are unable to mate. To clarify the conditions under which new chiral morphs might evolve and whether single-gene speciation can occur, we developed a mathematical model that is relevant to any maternal-effect gene. The model shows that reproductive character displacement can promote the evolution of new chiral morphs, tending to counteract the positive frequency-dependent selection that would otherwise drive the more common chiral morph to fixation. This therefore suggests a general mechanism as to how chiral variation arises in snails. In populations that contain both chiral morphs, two different situations are then possible. In the first, gene flow is substantial between morphs even without interchiral mating, because of the maternal inheritance of chirality. In the second, reproductive isolation is possible but unstable, and will also lead to gene flow if intrachiral matings occasionally produce offspring with the opposite chirality. Together, the results imply that speciation by chiral reversal is only meaningful in the context of a complex biogeographical process, and so must usually involve other factors. In order to understand the roles of reproductive character displacement and gene flow in the chiral evolution of Euhadra, it will be necessary to investigate populations in which both chiral morphs coexist.","lang":"eng"}],"publication_status":"published","month":"08","issue":"9","publisher":"Public Library of Science","date_published":"2005-08-09T00:00:00Z","title":"Speciation and gene flow between snails of opposing chirality","volume":3,"date_updated":"2021-01-12T07:44:39Z","quality_controlled":0,"extern":1,"citation":{"mla":"Davison, Angus, et al. “Speciation and Gene Flow between Snails of Opposing Chirality.” <i>PLoS Biology</i>, vol. 3, no. 9, Public Library of Science, 2005, doi:<a href=\"https://doi.org/10.1371/journal.pbio.0030282\">10.1371/journal.pbio.0030282</a>.","short":"A. Davison, S. Chiba, N.H. Barton, B. Clarke, PLoS Biology 3 (2005).","ieee":"A. Davison, S. Chiba, N. H. Barton, and B. Clarke, “Speciation and gene flow between snails of opposing chirality,” <i>PLoS Biology</i>, vol. 3, no. 9. Public Library of Science, 2005.","apa":"Davison, A., Chiba, S., Barton, N. H., &#38; Clarke, B. (2005). Speciation and gene flow between snails of opposing chirality. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.0030282\">https://doi.org/10.1371/journal.pbio.0030282</a>","ama":"Davison A, Chiba S, Barton NH, Clarke B. Speciation and gene flow between snails of opposing chirality. <i>PLoS Biology</i>. 2005;3(9). doi:<a href=\"https://doi.org/10.1371/journal.pbio.0030282\">10.1371/journal.pbio.0030282</a>","ista":"Davison A, Chiba S, Barton NH, Clarke B. 2005. Speciation and gene flow between snails of opposing chirality. PLoS Biology. 3(9).","chicago":"Davison, Angus, Satoshi Chiba, Nicholas H Barton, and Bernard Clarke. “Speciation and Gene Flow between Snails of Opposing Chirality.” <i>PLoS Biology</i>. Public Library of Science, 2005. <a href=\"https://doi.org/10.1371/journal.pbio.0030282\">https://doi.org/10.1371/journal.pbio.0030282</a>."},"author":[{"first_name":"Angus","last_name":"Davison","full_name":"Davison, Angus"},{"first_name":"Satoshi","last_name":"Chiba","full_name":"Chiba, Satoshi"},{"orcid":"0000-0002-8548-5240","first_name":"Nicholas H","last_name":"Barton","full_name":"Nicholas Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Clarke","first_name":"Bernard","full_name":"Clarke, Bernard"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":"         3","publist_id":"2771","publication":"PLoS Biology","date_created":"2018-12-11T12:04:14Z","_id":"3612","type":"journal_article","doi":"10.1371/journal.pbio.0030282","status":"public","year":"2005","day":"09"},{"type":"journal_article","_id":"3613","date_created":"2018-12-11T12:04:15Z","day":"01","year":"2005","status":"public","page":"1553 - 1571","doi":"10.1534/genetics.104.032367","publication":"Genetics","publist_id":"2770","intvolume":"       169","citation":{"ieee":"M. Gardner, K. Fowler, N. H. Barton, and L. Patridge, “Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns,” <i>Genetics</i>, vol. 169, no. 3. Genetics Society of America, pp. 1553–1571, 2005.","chicago":"Gardner, Michael, Kevin Fowler, Nicholas H Barton, and Linda Patridge. “Genetic Variation for Total Fitness in Drosophila Melanogaster: Complex yet Replicable Patterns.” <i>Genetics</i>. Genetics Society of America, 2005. <a href=\"https://doi.org/10.1534/genetics.104.032367\">https://doi.org/10.1534/genetics.104.032367</a>.","ama":"Gardner M, Fowler K, Barton NH, Patridge L. Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns. <i>Genetics</i>. 2005;169(3):1553-1571. doi:<a href=\"https://doi.org/10.1534/genetics.104.032367\">10.1534/genetics.104.032367</a>","ista":"Gardner M, Fowler K, Barton NH, Patridge L. 2005. Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns. Genetics. 169(3), 1553–1571.","apa":"Gardner, M., Fowler, K., Barton, N. H., &#38; Patridge, L. (2005). Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.104.032367\">https://doi.org/10.1534/genetics.104.032367</a>","mla":"Gardner, Michael, et al. “Genetic Variation for Total Fitness in Drosophila Melanogaster: Complex yet Replicable Patterns.” <i>Genetics</i>, vol. 169, no. 3, Genetics Society of America, 2005, pp. 1553–71, doi:<a href=\"https://doi.org/10.1534/genetics.104.032367\">10.1534/genetics.104.032367</a>.","short":"M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571."},"quality_controlled":0,"extern":1,"date_updated":"2021-01-12T07:44:40Z","author":[{"full_name":"Gardner, Michael P","last_name":"Gardner","first_name":"Michael"},{"full_name":"Fowler, Kevin","first_name":"Kevin","last_name":"Fowler"},{"first_name":"Nicholas H","last_name":"Barton","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","full_name":"Nicholas Barton"},{"first_name":"Linda","last_name":"Patridge","full_name":"Patridge, Linda"}],"issue":"3","publication_status":"published","month":"03","abstract":[{"text":"The extent of genetic variation in fitness is a crucial issue in evolutionary biology and yet remains largely unresolved. In Drosophila melanogaster, we have devised a method that allows the net effects on fitness of heterozygous wild-type chromosomes to be measured, by competing them against two different “balancer” chromosomes. We have applied the method to a large sample of 40 wild-type third chromosomes and have measured fitnesses of nonlethal chromosomes as well as chromosomes bearing recessive lethals. The measurements were made in the environment to which the population was adapted and did not involve inbreeding. The results show an extraordinary similarity in the behavior of replicates of the same chromosome, indicating consistent genetic effects on total fitness. Some invading chromosomes increased rapidly and some slowly, and some rose to appreciable frequency after several months, but then declined again: in every case, the same pattern was seen in each replicate. We estimated relative fitnesses, rates of change of fitness, and relative viabilities, for each chromosome. There were significant fluctuations around the fitted model, which were also highly replicable. Wild-type chromosomes varied substantially in their effects on heterozygous fitness, and these effects vary through time, most likely as a result of genotype × environment interactions.","lang":"eng"}],"volume":169,"title":"Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns","date_published":"2005-03-01T00:00:00Z","publisher":"Genetics Society of America"},{"date_updated":"2021-01-12T07:45:07Z","quality_controlled":0,"extern":1,"citation":{"apa":"Lampert, C., Braun, T., Ulges, A., Keysers, D., &#38; Breuel, T. (2005). Oblivious document capture and real-time retrieval (pp. 79–86). Presented at the CBDAR: Camera Based Document Analysis and Recognition , CBDAR.","ama":"Lampert C, Braun T, Ulges A, Keysers D, Breuel T. Oblivious document capture and real-time retrieval. In: CBDAR; 2005:79-86.","chicago":"Lampert, Christoph, Tim Braun, Adrian Ulges, Daniel Keysers, and Thomas Breuel. “Oblivious Document Capture and Real-Time Retrieval,” 79–86. CBDAR, 2005.","ista":"Lampert C, Braun T, Ulges A, Keysers D, Breuel T. 2005. Oblivious document capture and real-time retrieval. CBDAR: Camera Based Document Analysis and Recognition , 79–86.","ieee":"C. Lampert, T. Braun, A. Ulges, D. Keysers, and T. Breuel, “Oblivious document capture and real-time retrieval,” presented at the CBDAR: Camera Based Document Analysis and Recognition , 2005, pp. 79–86.","mla":"Lampert, Christoph, et al. <i>Oblivious Document Capture and Real-Time Retrieval</i>. CBDAR, 2005, pp. 79–86.","short":"C. Lampert, T. Braun, A. Ulges, D. Keysers, T. Breuel, in:, CBDAR, 2005, pp. 79–86."},"author":[{"full_name":"Christoph Lampert","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887","last_name":"Lampert","first_name":"Christoph"},{"full_name":"Braun,Tim","last_name":"Braun","first_name":"Tim"},{"full_name":"Ulges, Adrian","last_name":"Ulges","first_name":"Adrian"},{"full_name":"Keysers,Daniel","last_name":"Keysers","first_name":"Daniel"},{"first_name":"Thomas","last_name":"Breuel","full_name":"Breuel,Thomas M"}],"abstract":[{"text":"Ever since text processors became popular, users have\ndreamt of handling documents printed on paper as comfortably\nas electronic ones, with full text search typically\nappearing very close to the top of the wish list.\nThis paper presents the design of a prototype system that\ntakes a step into this direction. The user’s desktop is continuously\nmonitored and of each detected document a high\nresolution snapshot is taken using a digital camera. The\nresulting image is processed using specially designed dewarping\nand OCR algorithms, making a digital and fully\nsearchable version of the document available to the user in\nreal-time. These steps are performed without any user interaction.\nThis enables the system to run as a background\ntask without disturbing the user in her work, while at the\nsame time offering electronic access to all paper documents\nthat have been present on the desktop during the uptime of\nthe system.","lang":"eng"}],"month":"08","publication_status":"published","date_published":"2005-08-29T00:00:00Z","publisher":"CBDAR","title":"Oblivious document capture and real-time retrieval","date_created":"2018-12-11T12:04:36Z","_id":"3684","type":"conference","page":"79 - 86","day":"29","main_file_link":[{"open_access":"0","url":"http://pub.ist.ac.at/~chl/papers/lampert-cbdar2005.pdf"}],"status":"public","year":"2005","publist_id":"2693","conference":{"name":"CBDAR: Camera Based Document Analysis and Recognition "}},{"date_updated":"2021-01-12T07:48:58Z","quality_controlled":0,"extern":1,"citation":{"ieee":"A. Ulges, C. Lampert, and T. Breuel, “Document image dewarping using robust estimation of curled text lines,” presented at the ICDAR: International Conference on Document Analysis and Recognition, 2005, vol. 2, pp. 1001–1005.","apa":"Ulges, A., Lampert, C., &#38; Breuel, T. (2005). Document image dewarping using robust estimation of curled text lines (Vol. 2, pp. 1001–1005). Presented at the ICDAR: International Conference on Document Analysis and Recognition, IEEE. <a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\">https://doi.org/ 10.1109/ICDAR.2005.90</a>","ista":"Ulges A, Lampert C, Breuel T. 2005. Document image dewarping using robust estimation of curled text lines. ICDAR: International Conference on Document Analysis and Recognition, Document Analysis and Recognition, vol. 2, 1001–1005.","ama":"Ulges A, Lampert C, Breuel T. Document image dewarping using robust estimation of curled text lines. In: Vol 2. IEEE; 2005:1001-1005. doi:<a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\"> 10.1109/ICDAR.2005.90</a>","chicago":"Ulges, Adrian, Christoph Lampert, and Thomas Breuel. “Document Image Dewarping Using Robust Estimation of Curled Text Lines,” 2:1001–5. IEEE, 2005. <a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\">https://doi.org/ 10.1109/ICDAR.2005.90</a>.","mla":"Ulges, Adrian, et al. <i>Document Image Dewarping Using Robust Estimation of Curled Text Lines</i>. Vol. 2, IEEE, 2005, pp. 1001–05, doi:<a href=\"https://doi.org/ 10.1109/ICDAR.2005.90\"> 10.1109/ICDAR.2005.90</a>.","short":"A. Ulges, C. Lampert, T. Breuel, in:, IEEE, 2005, pp. 1001–1005."},"author":[{"last_name":"Ulges","first_name":"Adrian","full_name":"Ulges, Adrian"},{"first_name":"Christoph","last_name":"Lampert","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","full_name":"Christoph Lampert"},{"first_name":"Thomas","last_name":"Breuel","full_name":"Breuel,Thomas M"}],"alternative_title":["Document Analysis and Recognition"],"abstract":[{"lang":"eng","text":"Digital cameras have become almost ubiquitous and their use for fast and casual capturing of natural images is unchallenged. For making images of documents, however, they have not caught up to flatbed scanners yet, mainly because camera images tend to suffer from distortion due to the perspective and are therefore limited in their further use for archival or OCR. For images of non-planar paper surfaces like books, page curl causes additional distortion, which poses an even greater problem due to its nonlinearity. This paper presents a new algorithm for removing both perspective and page curl distortion. It requires only a single camera image as input and relies on a priori layout information instead of additional hardware. Therefore, it is much more user friendly than most previous approaches, and allows for flexible ad hoc document capture. Results are presented showing that the algorithm produces visually pleasing output and increases OCR accuracy, thus having the potential to become a general purpose preprocessing tool for camera based document capture."}],"publication_status":"published","month":"09","date_published":"2005-09-01T00:00:00Z","publisher":"IEEE","title":"Document image dewarping using robust estimation of curled text lines","volume":2,"date_created":"2018-12-11T12:04:38Z","_id":"3689","type":"conference","status":"public","main_file_link":[{"open_access":"0","url":"http:/pub.ist.ac.at/~chl/papers/ulges-icdar2004.pdf"}],"doi":" 10.1109/ICDAR.2005.90","page":"1001 - 1005","year":"2005","day":"01","intvolume":"         2","conference":{"name":"ICDAR: International Conference on Document Analysis and Recognition"},"publist_id":"2680"}]