[{"month":"01","author":[{"last_name":"Zhong","first_name":"Zheyang","full_name":"Zhong, Zheyang"},{"full_name":"Georgios Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros","first_name":"Georgios"},{"first_name":"Mathieu","last_name":"Stoffel","full_name":"Stoffel, Mathieu"},{"full_name":"Costantini, Giovanni","first_name":"Giovanni","last_name":"Costantini"},{"full_name":"Kern, Klaus","last_name":"Kern","first_name":"Klaus"},{"first_name":"Oliver","last_name":"Schmidt","full_name":"Schmidt, Oliver G"},{"full_name":"Jin-Phillipp, Neng Y","last_name":"Jin Phillipp","first_name":"Neng"},{"full_name":"Bauer, Günther","last_name":"Bauer","first_name":"Günther"}],"extern":1,"citation":{"ista":"Zhong Z, Katsaros G, Stoffel M, Costantini G, Kern K, Schmidt O, Jin Phillipp N, Bauer G. 2005. Periodic pillar structures by Si etching of multilayer GeSi/Si islands. Applied Physics Letters. 87(26), 1–3.","apa":"Zhong, Z., Katsaros, G., Stoffel, M., Costantini, G., Kern, K., Schmidt, O., … Bauer, G. (2005). Periodic pillar structures by Si etching of multilayer GeSi/Si islands. <i>Applied Physics Letters</i>. American Institute of Physics. <a href=\"https://doi.org/10.1063/1.2150278\">https://doi.org/10.1063/1.2150278</a>","ama":"Zhong Z, Katsaros G, Stoffel M, et al. Periodic pillar structures by Si etching of multilayer GeSi/Si islands. <i>Applied Physics Letters</i>. 2005;87(26):1-3. doi:<a href=\"https://doi.org/10.1063/1.2150278\">10.1063/1.2150278</a>","short":"Z. Zhong, G. Katsaros, M. Stoffel, G. Costantini, K. Kern, O. Schmidt, N. Jin Phillipp, G. Bauer, Applied Physics Letters 87 (2005) 1–3.","mla":"Zhong, Zheyang, et al. “Periodic Pillar Structures by Si Etching of Multilayer GeSi/Si Islands.” <i>Applied Physics Letters</i>, vol. 87, no. 26, American Institute of Physics, 2005, pp. 1–3, doi:<a href=\"https://doi.org/10.1063/1.2150278\">10.1063/1.2150278</a>.","chicago":"Zhong, Zheyang, Georgios Katsaros, Mathieu Stoffel, Giovanni Costantini, Klaus Kern, Oliver Schmidt, Neng Jin Phillipp, and Günther Bauer. “Periodic Pillar Structures by Si Etching of Multilayer GeSi/Si Islands.” <i>Applied Physics Letters</i>. American Institute of Physics, 2005. <a href=\"https://doi.org/10.1063/1.2150278\">https://doi.org/10.1063/1.2150278</a>.","ieee":"Z. Zhong <i>et al.</i>, “Periodic pillar structures by Si etching of multilayer GeSi/Si islands,” <i>Applied Physics Letters</i>, vol. 87, no. 26. American Institute of Physics, pp. 1–3, 2005."},"date_created":"2018-12-11T11:53:46Z","abstract":[{"text":"Laterally aligned multilayer GeSiSi islands grown on a patterned Si (001) substrate are disclosed by selective etching of Si in a KOH solution. This procedure allows us to visualize the vertical alignment of the islands in a three-dimensional perspective. Our technique reveals that partly coalesced double islands in the initial layer do not merge together, but instead gradually reproduce into well-separated double islands in upper layers. We attribute this effect to very thin spacer layers, which efficiently transfer the strain modulation of each island through the spacer layer to the surface. The etching rate of Si is reduced in tensile strained regions, which helps to preserve sufficient Si between the stacked islands to form a periodic array of freestanding and vertically modulated heterostructure pillars.","lang":"eng"}],"page":"1 - 3","date_published":"2005-01-01T00:00:00Z","status":"public","publication":"Applied Physics Letters","publist_id":"5381","issue":"26","acknowledgement":"This work was supported by the BMBF (03N8711) and the EU NOE SANDiE","_id":"1743","intvolume":"        87","title":"Periodic pillar structures by Si etching of multilayer GeSi/Si islands","doi":"10.1063/1.2150278","quality_controlled":0,"publication_status":"published","day":"01","publisher":"American Institute of Physics","date_updated":"2021-01-12T06:52:55Z","year":"2005","volume":87,"type":"journal_article"},{"title":"Non linear transmission effects in duobinary and dicode optical systems","doi":"10.1049/ip-opt:20045067","quality_controlled":0,"publication_status":"published","day":"01","publisher":"Institute of Electrical Engineers","date_updated":"2021-01-12T06:52:55Z","year":"2005","volume":152,"type":"journal_article","month":"12","author":[{"first_name":"Georgios","last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Georgios Katsaros"},{"first_name":"Izzat","last_name":"Darwazeh","full_name":"Darwazeh, Izzat Z"},{"first_name":"Phil","last_name":"Lane","full_name":"Lane, Phil M"}],"extern":1,"date_created":"2018-12-11T11:53:46Z","citation":{"chicago":"Katsaros, Georgios, Izzat Darwazeh, and Phil Lane. “Non Linear Transmission Effects in Duobinary and Dicode Optical Systems.” <i>IEE Proceedings - Optoelectronics</i>. Institute of Electrical Engineers, 2005. <a href=\"https://doi.org/10.1049/ip-opt:20045067\">https://doi.org/10.1049/ip-opt:20045067</a>.","ieee":"G. Katsaros, I. Darwazeh, and P. Lane, “Non linear transmission effects in duobinary and dicode optical systems,” <i>IEE Proceedings - Optoelectronics</i>, vol. 152, no. 6. Institute of Electrical Engineers, pp. 344–352, 2005.","short":"G. Katsaros, I. Darwazeh, P. Lane, IEE Proceedings - Optoelectronics 152 (2005) 344–352.","mla":"Katsaros, Georgios, et al. “Non Linear Transmission Effects in Duobinary and Dicode Optical Systems.” <i>IEE Proceedings - Optoelectronics</i>, vol. 152, no. 6, Institute of Electrical Engineers, 2005, pp. 344–52, doi:<a href=\"https://doi.org/10.1049/ip-opt:20045067\">10.1049/ip-opt:20045067</a>.","ama":"Katsaros G, Darwazeh I, Lane P. Non linear transmission effects in duobinary and dicode optical systems. <i>IEE Proceedings - Optoelectronics</i>. 2005;152(6):344-352. doi:<a href=\"https://doi.org/10.1049/ip-opt:20045067\">10.1049/ip-opt:20045067</a>","ista":"Katsaros G, Darwazeh I, Lane P. 2005. Non linear transmission effects in duobinary and dicode optical systems. IEE Proceedings - Optoelectronics. 152(6), 344–352.","apa":"Katsaros, G., Darwazeh, I., &#38; Lane, P. (2005). Non linear transmission effects in duobinary and dicode optical systems. <i>IEE Proceedings - Optoelectronics</i>. Institute of Electrical Engineers. <a href=\"https://doi.org/10.1049/ip-opt:20045067\">https://doi.org/10.1049/ip-opt:20045067</a>"},"abstract":[{"lang":"eng","text":"This paper presents optical duobinary and dicode signalling, as alternatives to the binary format, in order to improve the transmission performance in the presense of non-linear effects in a dense wavelength division multiplex (WDM) optical system. Duobinary signalling is applied to an optical system to explore the reduction of stimulated Brillouin scattering (SBS) effects. Duobinary signalling suppresses the SBS effects, and an eye-opening improvement of 0.25 to 1.2 dB is achieved relative to binary transmission over a range of input power levels. An experimental study demonstrates that duobinary modulation suppresses the four wave mixing (FWM) products of a dense WDM system by a maximum of 3 dB. The suppression is maintained over a range of channel spacings. An investigation of the impact of fibre dispersion on FWM products under binary, duobinary and dicode modulation in a dense WDM system is then performed, with interchannel spacing and optical power variation. This leads to the development of a set of guidelines for the application areas, in which it is appropriate to use duobinary or dicode modulation in WDM systems as a means of mitigating the impact of FWM."}],"page":"344 - 352","status":"public","date_published":"2005-12-01T00:00:00Z","publication":"IEE Proceedings - Optoelectronics","publist_id":"5380","issue":"6","acknowledgement":"IET","_id":"1744","intvolume":"       152"},{"type":"journal_article","volume":2,"year":"2005","date_updated":"2021-01-12T06:53:15Z","publisher":"BioMed Central","day":"12","publication_status":"published","quality_controlled":0,"doi":"10.1186/1742-6405-2-7","title":"Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors","_id":"1795","intvolume":"         2","publication":"AIDS Research and Therapy","publist_id":"5315","issue":"1","status":"public","date_published":"2005-09-12T00:00:00Z","abstract":[{"text":"Background: Murine leukemia virus (MLV) vector particles can be pseudotyped with a truncated variant of the human immunodeficiency virus type 1 (HIV-1) envelope protein (Env) and selectively target gene transfer to human cells expressing both CD4 and an appropriate co-receptor. Vector transduction mimics the HIV-1 entry process and is therefore a safe tool to study HIV-1 entry. Results: Using FLY cells, which express the MLV gag and pol genes, we generated stable producer cell lines that express the HIV-1 envelope gene and a retroviral vector genome encoding the green fluorescent protein (GFP). The BH10 or 89.6 P HIV-1 Env was expressed from a bicistronic vector which allowed the rapid selection of stable cell lines. A codon-usage-optimized synthetic env gene permitted high, Rev-independent Env expression. Vectors generated by these producer cells displayed different sensitivity to entry inhibitors. Conclusion: These data illustrate that MLV/HIV-1 vectors are a valuable screening system for entry inhibitors or neutralizing antisera generated by vaccines.","lang":"eng"}],"date_created":"2018-12-11T11:54:03Z","citation":{"chicago":"Siegert, Sandra, Sonja Thaler, Ralf Wagner, and Barbara Schnierle. “Assessment of HIV-1 Entry Inhibitors by MLV/HIV-1 Pseudotyped Vectors.” <i>AIDS Research and Therapy</i>. BioMed Central, 2005. <a href=\"https://doi.org/10.1186/1742-6405-2-7\">https://doi.org/10.1186/1742-6405-2-7</a>.","ieee":"S. Siegert, S. Thaler, R. Wagner, and B. Schnierle, “Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors,” <i>AIDS Research and Therapy</i>, vol. 2, no. 1. BioMed Central, 2005.","mla":"Siegert, Sandra, et al. “Assessment of HIV-1 Entry Inhibitors by MLV/HIV-1 Pseudotyped Vectors.” <i>AIDS Research and Therapy</i>, vol. 2, no. 1, BioMed Central, 2005, doi:<a href=\"https://doi.org/10.1186/1742-6405-2-7\">10.1186/1742-6405-2-7</a>.","short":"S. Siegert, S. Thaler, R. Wagner, B. Schnierle, AIDS Research and Therapy 2 (2005).","ama":"Siegert S, Thaler S, Wagner R, Schnierle B. Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors. <i>AIDS Research and Therapy</i>. 2005;2(1). doi:<a href=\"https://doi.org/10.1186/1742-6405-2-7\">10.1186/1742-6405-2-7</a>","ista":"Siegert S, Thaler S, Wagner R, Schnierle B. 2005. Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors. AIDS Research and Therapy. 2(1).","apa":"Siegert, S., Thaler, S., Wagner, R., &#38; Schnierle, B. (2005). Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors. <i>AIDS Research and Therapy</i>. BioMed Central. <a href=\"https://doi.org/10.1186/1742-6405-2-7\">https://doi.org/10.1186/1742-6405-2-7</a>"},"extern":1,"author":[{"id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","last_name":"Siegert","first_name":"Sandra","full_name":"Sandra Siegert","orcid":"0000-0001-8635-0877"},{"full_name":"Thaler, Sonja","last_name":"Thaler","first_name":"Sonja"},{"last_name":"Wagner","first_name":"Ralf","full_name":"Wagner, Ralf"},{"full_name":"Schnierle, Barbara S","last_name":"Schnierle","first_name":"Barbara"}],"month":"09"},{"doi":"10.1126/science.1113988","title":"Biochemistry: Organization of iron-sulfur clusters in respiratory complex I","quality_controlled":0,"day":"29","publication_status":"published","date_updated":"2021-01-12T06:54:22Z","publisher":"American Association for the Advancement of Science","year":"2005","type":"journal_article","volume":309,"author":[{"first_name":"Philip","last_name":"Hinchliffe","full_name":"Hinchliffe, Philip "},{"id":"338D39FE-F248-11E8-B48F-1D18A9856A87","first_name":"Leonid A","last_name":"Sazanov","full_name":"Leonid Sazanov","orcid":"0000-0002-0977-7989"}],"month":"07","extern":1,"date_created":"2018-12-11T11:54:56Z","citation":{"ieee":"P. Hinchliffe and L. A. Sazanov, “Biochemistry: Organization of iron-sulfur clusters in respiratory complex I,” <i>Science</i>, vol. 309, no. 5735. American Association for the Advancement of Science, pp. 771–774, 2005.","chicago":"Hinchliffe, Philip, and Leonid A Sazanov. “Biochemistry: Organization of Iron-Sulfur Clusters in Respiratory Complex I.” <i>Science</i>. American Association for the Advancement of Science, 2005. <a href=\"https://doi.org/10.1126/science.1113988\">https://doi.org/10.1126/science.1113988</a>.","short":"P. Hinchliffe, L.A. Sazanov, Science 309 (2005) 771–774.","mla":"Hinchliffe, Philip, and Leonid A. Sazanov. “Biochemistry: Organization of Iron-Sulfur Clusters in Respiratory Complex I.” <i>Science</i>, vol. 309, no. 5735, American Association for the Advancement of Science, 2005, pp. 771–74, doi:<a href=\"https://doi.org/10.1126/science.1113988\">10.1126/science.1113988</a>.","ama":"Hinchliffe P, Sazanov LA. Biochemistry: Organization of iron-sulfur clusters in respiratory complex I. <i>Science</i>. 2005;309(5735):771-774. doi:<a href=\"https://doi.org/10.1126/science.1113988\">10.1126/science.1113988</a>","apa":"Hinchliffe, P., &#38; Sazanov, L. A. (2005). Biochemistry: Organization of iron-sulfur clusters in respiratory complex I. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1113988\">https://doi.org/10.1126/science.1113988</a>","ista":"Hinchliffe P, Sazanov LA. 2005. Biochemistry: Organization of iron-sulfur clusters in respiratory complex I. Science. 309(5735), 771–774."},"page":"771 - 774","abstract":[{"text":"\n\nComplex I of respiratory chains plays a central role in bioenergetics and is implicated in many human neurodegenerative diseases. An understanding of its mechanism requires a knowledge of the organization of redox centers. The arrangement of iron-sulfur clusters in the hydrophilic domain of complex I from Thermus thermophilus has been determined with the use of x-ray crystallography. One binuclear and six tetranuclear clusters are arranged, maximally 14 angstroms apart, in an 84-angstrom-long electron transfer chain. The binuclear cluster N1a and the tetranuclear cluster N7 are not in this pathway. Cluster N1a may play a role in the prevention of oxidative damage. The structure provides a framework for the interpretation of the large amounts of data accumulated on complex I.","lang":"eng"}],"publication":"Science","publist_id":"5122","issue":"5735","status":"public","date_published":"2005-07-29T00:00:00Z","_id":"1962","intvolume":"       309","acknowledgement":"This work was funded by the Medical Research Council."},{"page":"1361-1365","issue":"11","language":[{"iso":"eng"}],"_id":"13431","month":"06","author":[{"full_name":"Smoukov, S. K.","last_name":"Smoukov","first_name":"S. K."},{"full_name":"Bishop, K. J. M.","first_name":"K. J. M.","last_name":"Bishop"},{"full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"},{"last_name":"Campbell","first_name":"C. J.","full_name":"Campbell, C. J."},{"full_name":"Grzybowski, B. A.","last_name":"Grzybowski","first_name":"B. A."}],"article_type":"original","keyword":["Mechanical Engineering","Mechanics of Materials","General Materials Science"],"citation":{"apa":"Smoukov, S. K., Bishop, K. J. M., Klajn, R., Campbell, C. J., &#38; Grzybowski, B. A. (2005). Cutting into solids with micropatterned gels. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.200402086\">https://doi.org/10.1002/adma.200402086</a>","ista":"Smoukov SK, Bishop KJM, Klajn R, Campbell CJ, Grzybowski BA. 2005. Cutting into solids with micropatterned gels. Advanced Materials. 17(11), 1361–1365.","ama":"Smoukov SK, Bishop KJM, Klajn R, Campbell CJ, Grzybowski BA. Cutting into solids with micropatterned gels. <i>Advanced Materials</i>. 2005;17(11):1361-1365. doi:<a href=\"https://doi.org/10.1002/adma.200402086\">10.1002/adma.200402086</a>","short":"S.K. Smoukov, K.J.M. Bishop, R. Klajn, C.J. Campbell, B.A. Grzybowski, Advanced Materials 17 (2005) 1361–1365.","mla":"Smoukov, S. K., et al. “Cutting into Solids with Micropatterned Gels.” <i>Advanced Materials</i>, vol. 17, no. 11, Wiley, 2005, pp. 1361–65, doi:<a href=\"https://doi.org/10.1002/adma.200402086\">10.1002/adma.200402086</a>.","ieee":"S. K. Smoukov, K. J. M. Bishop, R. Klajn, C. J. Campbell, and B. A. Grzybowski, “Cutting into solids with micropatterned gels,” <i>Advanced Materials</i>, vol. 17, no. 11. Wiley, pp. 1361–1365, 2005.","chicago":"Smoukov, S. K., K. J. M. Bishop, Rafal Klajn, C. J. Campbell, and B. A. Grzybowski. “Cutting into Solids with Micropatterned Gels.” <i>Advanced Materials</i>. Wiley, 2005. <a href=\"https://doi.org/10.1002/adma.200402086\">https://doi.org/10.1002/adma.200402086</a>."},"year":"2005","article_processing_charge":"No","title":"Cutting into solids with micropatterned gels","doi":"10.1002/adma.200402086","external_id":{"pmid":["34412440"]},"publication_identifier":{"eissn":["1521-4095"],"issn":["0935-9648"]},"day":"24","date_updated":"2023-08-08T11:53:16Z","abstract":[{"text":"Hydrogel stamps can microstructure solid surfaces, i.e., modify the surface topology of metals, glasses, and crystals. It is demonstrated that stamps soaked in an appropriate etchant can remove material with micrometer-scale precision. The Figure shows an array of concentric circles etched in glass using the immersion wet stamping process described (scale bar: 500 μm).","lang":"eng"}],"status":"public","date_published":"2005-06-24T00:00:00Z","publication":"Advanced Materials","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"        17","oa_version":"None","scopus_import":"1","extern":"1","date_created":"2023-08-01T10:38:01Z","volume":17,"type":"journal_article","pmid":1,"quality_controlled":"1","publication_status":"published","publisher":"Wiley"},{"external_id":{"pmid":["15620333"]},"title":"One-step multilevel microfabrication by reaction−diffusion","doi":"10.1021/la0487747","date_updated":"2023-08-08T12:15:48Z","publication_identifier":{"issn":["0743-7463"],"eissn":["1520-5827"]},"day":"21","year":"2005","article_processing_charge":"No","month":"01","author":[{"full_name":"Campbell, Christopher J.","last_name":"Campbell","first_name":"Christopher J."},{"first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal"},{"full_name":"Fialkowski, Marcin","last_name":"Fialkowski","first_name":"Marcin"},{"last_name":"Grzybowski","first_name":"Bartosz A.","full_name":"Grzybowski, Bartosz A."}],"keyword":["Electrochemistry","Spectroscopy","Surfaces and Interfaces","Condensed Matter Physics","General Materials Science"],"citation":{"ama":"Campbell CJ, Klajn R, Fialkowski M, Grzybowski BA. One-step multilevel microfabrication by reaction−diffusion. <i>Langmuir</i>. 2005;21(1):418-423. doi:<a href=\"https://doi.org/10.1021/la0487747\">10.1021/la0487747</a>","apa":"Campbell, C. J., Klajn, R., Fialkowski, M., &#38; Grzybowski, B. A. (2005). One-step multilevel microfabrication by reaction−diffusion. <i>Langmuir</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/la0487747\">https://doi.org/10.1021/la0487747</a>","ista":"Campbell CJ, Klajn R, Fialkowski M, Grzybowski BA. 2005. One-step multilevel microfabrication by reaction−diffusion. Langmuir. 21(1), 418–423.","ieee":"C. J. Campbell, R. Klajn, M. Fialkowski, and B. A. Grzybowski, “One-step multilevel microfabrication by reaction−diffusion,” <i>Langmuir</i>, vol. 21, no. 1. American Chemical Society, pp. 418–423, 2005.","chicago":"Campbell, Christopher J., Rafal Klajn, Marcin Fialkowski, and Bartosz A. Grzybowski. “One-Step Multilevel Microfabrication by Reaction−diffusion.” <i>Langmuir</i>. American Chemical Society, 2005. <a href=\"https://doi.org/10.1021/la0487747\">https://doi.org/10.1021/la0487747</a>.","mla":"Campbell, Christopher J., et al. “One-Step Multilevel Microfabrication by Reaction−diffusion.” <i>Langmuir</i>, vol. 21, no. 1, American Chemical Society, 2005, pp. 418–23, doi:<a href=\"https://doi.org/10.1021/la0487747\">10.1021/la0487747</a>.","short":"C.J. Campbell, R. Klajn, M. Fialkowski, B.A. Grzybowski, Langmuir 21 (2005) 418–423."},"article_type":"original","issue":"1","page":"418-423","_id":"13432","language":[{"iso":"eng"}],"pmid":1,"quality_controlled":"1","publisher":"American Chemical Society","publication_status":"published","volume":21,"type":"journal_article","oa_version":"None","date_created":"2023-08-01T10:38:29Z","extern":"1","scopus_import":"1","status":"public","date_published":"2005-01-21T00:00:00Z","publication":"Langmuir","abstract":[{"text":"A new experimental technique is described that uses reaction−diffusion phenomena as a means of one-step microfabrication of complex, multilevel surface reliefs. Thin films of dry gelatin doped with potassium hexacyanoferrate are chemically micropatterned with a solution of silver nitrate delivered from an agarose stamp. Precipitation reaction between the two salts causes the surface to deform. The mechanism of surface deformation is shown to involve a sequence of reactions, diffusion, and gel swelling/contraction. This mechanism is established experimentally and provides a basis of a theoretical lattice-gas model that allows prediction surface topographies emerging from arbitrary geometries of the stamped features. The usefulness of the technique is demonstrated by using it to rapidly prepare two types of mold for passive microfluidic mixers.","lang":"eng"}],"intvolume":"        21","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"         8","abstract":[{"lang":"eng","text":"Self-assembled monolayers (SAMs) of alkane thiols on gold and other metals are versatile constructs with which to study interfacial phenomena and reactions at surfaces. Surface properties of SAMs - e.g., wettability, stability in diverse environments, propensity to interact with or to resist adsorption of macromolecules -- depend on and can be controlled flexibly by the properties of the functional (head) groups in the w position of the alkyl chain. SAMs provide a basis for many important scientific and technological applications, ranging from micropatterning methods, through sensing, to biological recognition. Despite their importance, the literature on SAMs and the synthesis of molecules that constitute them remains scattered and often conflicting. The purpose of this Review is (i) to summarize the applications and physical properties of SAMs and (ii) to systematize the strategies of synthesis of ω-functionalized alkane thiols. Generic retrosynthetic scheme is developed that allows efficient synthetic planning. Issues related to the selection of appropriate protecting groups and the ways of introduction of the thiol functionality are discussed in detail, and illustrated with examples of syntheses of several complex alkane thiols."}],"date_published":"2005-12-01T00:00:00Z","status":"public","publication":"Current Organic Chemistry","scopus_import":"1","extern":"1","date_created":"2023-08-01T10:38:58Z","oa_version":"None","volume":8,"type":"journal_article","publication_status":"published","publisher":"Bentham Science","quality_controlled":"1","_id":"13433","language":[{"iso":"eng"}],"page":"1763-1797","issue":"18","article_type":"original","keyword":["Organic Chemistry"],"citation":{"short":"D. Witt, R. Klajn, P. Barski, B. Grzybowski, Current Organic Chemistry 8 (2005) 1763–1797.","mla":"Witt, Dariusz, et al. “Applications, Properties and Synthesis of w-Functionalized n-Alkanethiols and Disulfides - the Building Blocks of Self-Assembled Monolayers.” <i>Current Organic Chemistry</i>, vol. 8, no. 18, Bentham Science, 2005, pp. 1763–97, doi:<a href=\"https://doi.org/10.2174/1385272043369421\">10.2174/1385272043369421</a>.","chicago":"Witt, Dariusz, Rafal Klajn, Piotr Barski, and Bartosz Grzybowski. “Applications, Properties and Synthesis of w-Functionalized n-Alkanethiols and Disulfides - the Building Blocks of Self-Assembled Monolayers.” <i>Current Organic Chemistry</i>. Bentham Science, 2005. <a href=\"https://doi.org/10.2174/1385272043369421\">https://doi.org/10.2174/1385272043369421</a>.","ieee":"D. Witt, R. Klajn, P. Barski, and B. Grzybowski, “Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers,” <i>Current Organic Chemistry</i>, vol. 8, no. 18. Bentham Science, pp. 1763–1797, 2005.","ista":"Witt D, Klajn R, Barski P, Grzybowski B. 2005. Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers. Current Organic Chemistry. 8(18), 1763–1797.","apa":"Witt, D., Klajn, R., Barski, P., &#38; Grzybowski, B. (2005). Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers. <i>Current Organic Chemistry</i>. Bentham Science. <a href=\"https://doi.org/10.2174/1385272043369421\">https://doi.org/10.2174/1385272043369421</a>","ama":"Witt D, Klajn R, Barski P, Grzybowski B. Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers. <i>Current Organic Chemistry</i>. 2005;8(18):1763-1797. doi:<a href=\"https://doi.org/10.2174/1385272043369421\">10.2174/1385272043369421</a>"},"month":"12","author":[{"first_name":"Dariusz","last_name":"Witt","full_name":"Witt, Dariusz"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","first_name":"Rafal","full_name":"Klajn, Rafal"},{"last_name":"Barski","first_name":"Piotr","full_name":"Barski, Piotr"},{"last_name":"Grzybowski","first_name":"Bartosz","full_name":"Grzybowski, Bartosz"}],"article_processing_charge":"No","year":"2005","publication_identifier":{"eissn":["1875-5348"],"issn":["1385-2728"]},"day":"01","date_updated":"2023-08-08T12:39:52Z","title":"Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers","doi":"10.2174/1385272043369421"},{"doi":"10.1007/0-8176-4417-2_9","title":"Mirror symmetry and Langlands duality in the non-Abelian Hodge theory of a curve","quality_controlled":0,"day":"01","publication_status":"published","date_updated":"2021-01-12T06:50:47Z","publisher":"Springer","main_file_link":[{"url":"http://arxiv.org/abs/math/0406380","open_access":"1"}],"year":"2005","type":"book_chapter","volume":235,"oa":1,"author":[{"full_name":"Tamas Hausel","last_name":"Hausel","first_name":"Tamas","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"}],"month":"01","extern":1,"alternative_title":["Progress in Mathematics"],"date_created":"2018-12-11T11:52:03Z","citation":{"ista":"Hausel T. 2005.Mirror symmetry and Langlands duality in the non-Abelian Hodge theory of a curve. In: Geometric Methods in Algebra and Number Theory. Progress in Mathematics, vol. 235, 193–217.","apa":"Hausel, T. (2005). Mirror symmetry and Langlands duality in the non-Abelian Hodge theory of a curve. In <i>Geometric Methods in Algebra and Number Theory</i> (Vol. 235, pp. 193–217). Springer. <a href=\"https://doi.org/10.1007/0-8176-4417-2_9\">https://doi.org/10.1007/0-8176-4417-2_9</a>","ama":"Hausel T. Mirror symmetry and Langlands duality in the non-Abelian Hodge theory of a curve. In: <i>Geometric Methods in Algebra and Number Theory</i>. Vol 235. Springer; 2005:193-217. doi:<a href=\"https://doi.org/10.1007/0-8176-4417-2_9\">10.1007/0-8176-4417-2_9</a>","short":"T. Hausel, in:, Geometric Methods in Algebra and Number Theory, Springer, 2005, pp. 193–217.","mla":"Hausel, Tamás. “Mirror Symmetry and Langlands Duality in the Non-Abelian Hodge Theory of a Curve.” <i>Geometric Methods in Algebra and Number Theory</i>, vol. 235, Springer, 2005, pp. 193–217, doi:<a href=\"https://doi.org/10.1007/0-8176-4417-2_9\">10.1007/0-8176-4417-2_9</a>.","chicago":"Hausel, Tamás. “Mirror Symmetry and Langlands Duality in the Non-Abelian Hodge Theory of a Curve.” In <i>Geometric Methods in Algebra and Number Theory</i>, 235:193–217. Springer, 2005. <a href=\"https://doi.org/10.1007/0-8176-4417-2_9\">https://doi.org/10.1007/0-8176-4417-2_9</a>.","ieee":"T. Hausel, “Mirror symmetry and Langlands duality in the non-Abelian Hodge theory of a curve,” in <i>Geometric Methods in Algebra and Number Theory</i>, vol. 235, Springer, 2005, pp. 193–217."},"page":"193 - 217","abstract":[{"text":"The paper surveys the mirror symmetry conjectures of Hausel-Thaddeus and Hausel-Rodriguez-Villegas concerning the equality of certain Hodge numbers of SL(n, ℂ) vs. PGL(n, ℂ) flat connections and character varieties for curves, respectively. Several new results and conjectures and their relations to works of Hitchin, Gothen, Garsia-Haiman and Earl-Kirwan are explained. These use the representation theory of finite groups of Lie-type via the arithmetic of character varieties and lead to an unexpected conjecture for a Hard Lefschetz theorem for their cohomology.","lang":"eng"}],"publist_id":"5752","publication":"Geometric Methods in Algebra and Number Theory","status":"public","date_published":"2005-01-01T00:00:00Z","_id":"1444","intvolume":"       235"},{"publication_status":"published","day":"01","publisher":"Central European Science Journals","date_updated":"2021-01-12T06:50:49Z","title":"Quaternionic geometry of matroids","doi":"10.2478/BF02475653","quality_controlled":0,"volume":3,"type":"journal_article","oa":1,"year":"2005","main_file_link":[{"url":"http://arxiv.org/abs/math/0308146","open_access":"1"}],"extern":1,"citation":{"ieee":"T. Hausel, “Quaternionic geometry of matroids,” <i>Open Mathematics</i>, vol. 3, no. 1. Central European Science Journals, pp. 26–38, 2005.","chicago":"Hausel, Tamás. “Quaternionic Geometry of Matroids.” <i>Open Mathematics</i>. Central European Science Journals, 2005. <a href=\"https://doi.org/10.2478/BF02475653\">https://doi.org/10.2478/BF02475653</a>.","short":"T. Hausel, Open Mathematics 3 (2005) 26–38.","mla":"Hausel, Tamás. “Quaternionic Geometry of Matroids.” <i>Open Mathematics</i>, vol. 3, no. 1, Central European Science Journals, 2005, pp. 26–38, doi:<a href=\"https://doi.org/10.2478/BF02475653\">10.2478/BF02475653</a>.","ama":"Hausel T. Quaternionic geometry of matroids. <i>Open Mathematics</i>. 2005;3(1):26-38. doi:<a href=\"https://doi.org/10.2478/BF02475653\">10.2478/BF02475653</a>","apa":"Hausel, T. (2005). Quaternionic geometry of matroids. <i>Open Mathematics</i>. Central European Science Journals. <a href=\"https://doi.org/10.2478/BF02475653\">https://doi.org/10.2478/BF02475653</a>","ista":"Hausel T. 2005. Quaternionic geometry of matroids. Open Mathematics. 3(1), 26–38."},"date_created":"2018-12-11T11:52:05Z","month":"03","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","last_name":"Hausel","first_name":"Tamas","full_name":"Tamas Hausel"}],"acknowledgement":"Financial support wa s provided by a Miller Research Fellowship at the University of California at Berkeley , and by NSF grants DMS- 0072675 and DMS-0305505.","intvolume":"         3","_id":"1447","abstract":[{"text":"Building on a recent paper [8], here we argue that the combinatorics of matroids are intimately related to the geometry and topology of toric hyperkähler varieties. We show that just like toric varieties occupy a central role in Stanley’s proof for the necessity of McMullen’s conjecture (or g-inequalities) about the classification of face vectors of simplicial polytopes, the topology of toric hyperkähler varieties leads to new restrictions on face vectors of matroid complexes. Namely in this paper we will give two proofs that the injectivity part of the Hard Lefschetz theorem survives for toric hyperkähler varieties. We explain how this implies the g-inequalities for rationally representable matroids. We show how the geometrical intuition in the first proof, coupled with results of Chari [3], leads to a proof of the g-inequalities for general matroid complexes, which is a recent result of Swartz [20]. The geometrical idea in the second proof will show that a pure O-sequence should satisfy the g-inequalities, thus showing that our result is in fact a consequence of a long-standing conjecture of Stanley.","lang":"eng"}],"page":"26 - 38","status":"public","date_published":"2005-03-01T00:00:00Z","issue":"1","publication":"Open Mathematics","publist_id":"5749"},{"extern":1,"citation":{"mla":"Hausel, Tamás, and Nicholas Proudfoot. “Abelianization for Hyperkähler Quotients.” <i>Topology</i>, vol. 44, no. 1, Elsevier, 2005, pp. 231–48, doi:<a href=\"https://doi.org/10.1016/j.top.2004.04.002\">10.1016/j.top.2004.04.002</a>.","short":"T. Hausel, N. Proudfoot, Topology 44 (2005) 231–248.","ieee":"T. Hausel and N. Proudfoot, “Abelianization for hyperkähler quotients,” <i>Topology</i>, vol. 44, no. 1. Elsevier, pp. 231–248, 2005.","chicago":"Hausel, Tamás, and Nicholas Proudfoot. “Abelianization for Hyperkähler Quotients.” <i>Topology</i>. Elsevier, 2005. <a href=\"https://doi.org/10.1016/j.top.2004.04.002\">https://doi.org/10.1016/j.top.2004.04.002</a>.","apa":"Hausel, T., &#38; Proudfoot, N. (2005). Abelianization for hyperkähler quotients. <i>Topology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.top.2004.04.002\">https://doi.org/10.1016/j.top.2004.04.002</a>","ista":"Hausel T, Proudfoot N. 2005. Abelianization for hyperkähler quotients. Topology. 44(1), 231–248.","ama":"Hausel T, Proudfoot N. Abelianization for hyperkähler quotients. <i>Topology</i>. 2005;44(1):231-248. doi:<a href=\"https://doi.org/10.1016/j.top.2004.04.002\">10.1016/j.top.2004.04.002</a>"},"date_created":"2018-12-11T11:52:10Z","month":"01","author":[{"full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamas","last_name":"Hausel"},{"first_name":"Nicholas","last_name":"Proudfoot","full_name":"Proudfoot, Nicholas J"}],"acknowledgement":" Financial support was provided in part by NSF Grants DMS-0072675 and DMS-0305505.","_id":"1463","intvolume":"        44","abstract":[{"lang":"eng","text":"We study an integration theory in circle equivariant cohomology in order to prove a theorem relating the cohomology ring of a hyperkähler quotient to the cohomology ring of the quotient by a maximal abelian subgroup, analogous to a theorem of Martin for symplectic quotients. We discuss applications of this theorem to quiver varieties, and compute as an example the ordinary and equivariant cohomology rings of a hyperpolygon space."}],"page":"231 - 248","status":"public","date_published":"2005-01-01T00:00:00Z","issue":"1","publication":"Topology","publist_id":"5735","publication_status":"published","day":"01","publisher":"Elsevier","date_updated":"2021-01-12T06:50:55Z","title":"Abelianization for hyperkähler quotients","doi":"10.1016/j.top.2004.04.002","quality_controlled":0,"volume":44,"type":"journal_article","oa":1,"year":"2005","main_file_link":[{"url":"http://arxiv.org/abs/math/0310141","open_access":"1"}]},{"citation":{"ieee":"O. Hosten, M. Rakher, J. Barreiro, N. Peters, and P. Kwiat, “Counterfactual quantum computation,” presented at the QELS: Quantum Electronics and Laser Science, 2005, vol. 1, pp. 365–367.","chicago":"Hosten, Onur, Matthew Rakher, Julio Barreiro, Nicholas Peters, and Paul Kwiat. “Counterfactual Quantum Computation,” 1:365–67. IEEE, 2005. <a href=\"https://doi.org/ 10.1109/QELS.2005.1548783\">https://doi.org/ 10.1109/QELS.2005.1548783</a>.","mla":"Hosten, Onur, et al. <i>Counterfactual Quantum Computation</i>. Vol. 1, IEEE, 2005, pp. 365–67, doi:<a href=\"https://doi.org/ 10.1109/QELS.2005.1548783\"> 10.1109/QELS.2005.1548783</a>.","short":"O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.","ama":"Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. Counterfactual quantum computation. In: Vol 1. IEEE; 2005:365-367. doi:<a href=\"https://doi.org/ 10.1109/QELS.2005.1548783\"> 10.1109/QELS.2005.1548783</a>","apa":"Hosten, O., Rakher, M., Barreiro, J., Peters, N., &#38; Kwiat, P. (2005). Counterfactual quantum computation (Vol. 1, pp. 365–367). Presented at the QELS: Quantum Electronics and Laser Science, IEEE. <a href=\"https://doi.org/ 10.1109/QELS.2005.1548783\">https://doi.org/ 10.1109/QELS.2005.1548783</a>","ista":"Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. 2005. Counterfactual quantum computation. QELS: Quantum Electronics and Laser Science, QELS, vol. 1, 365–367."},"date_created":"2018-12-11T11:47:16Z","extern":1,"alternative_title":["QELS"],"author":[{"orcid":"0000-0002-2031-204X","full_name":"Onur Hosten","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","last_name":"Hosten","first_name":"Onur"},{"first_name":"Matthew","last_name":"Rakher","full_name":"Rakher, Matthew T"},{"full_name":"Barreiro, Julio T","first_name":"Julio","last_name":"Barreiro"},{"last_name":"Peters","first_name":"Nicholas","full_name":"Peters, Nicholas A"},{"first_name":"Paul","last_name":"Kwiat","full_name":"Kwiat, Paul G"}],"month":"01","_id":"575","intvolume":"         1","publist_id":"7237","status":"public","date_published":"2005-01-01T00:00:00Z","page":"365 - 367","abstract":[{"lang":"eng","text":"We present the first demonstration of Jozsa's &quot;counterfactual computation&quot;, using an optical Grover's search algorithm. We put the algorithm in a superposition of 'running' and 'not-running', obtaining information even though the algorithm does not run."}],"date_updated":"2021-01-12T08:03:18Z","publisher":"IEEE","day":"01","publication_status":"published","quality_controlled":0,"doi":" 10.1109/QELS.2005.1548783","title":"Counterfactual quantum computation","type":"conference","volume":1,"year":"2005","conference":{"name":"QELS: Quantum Electronics and Laser Science"}},{"title":"Neuronal substrates of complex behaviors in C. elegans","doi":"10.1146/annurev.neuro.27.070203.144259","pmid":1,"external_id":{"pmid":["16022603"]},"quality_controlled":"1","publication_status":"published","publication_identifier":{"issn":["0147-006X","1545-4126"]},"day":"21","publisher":"Annual Reviews","date_updated":"2021-01-12T08:06:24Z","year":"2005","volume":28,"type":"journal_article","article_processing_charge":"No","month":"07","author":[{"first_name":"Mario","last_name":"de Bono","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario","orcid":"0000-0001-8347-0443"},{"first_name":"Andres","last_name":"Villu Maricq","full_name":"Villu Maricq, Andres"}],"oa_version":"None","extern":"1","article_type":"original","citation":{"ama":"de Bono M, Villu Maricq A. Neuronal substrates of complex behaviors in C. elegans. <i>Annual Review of Neuroscience</i>. 2005;28:451-501. doi:<a href=\"https://doi.org/10.1146/annurev.neuro.27.070203.144259\">10.1146/annurev.neuro.27.070203.144259</a>","apa":"de Bono, M., &#38; Villu Maricq, A. (2005). Neuronal substrates of complex behaviors in C. elegans. <i>Annual Review of Neuroscience</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev.neuro.27.070203.144259\">https://doi.org/10.1146/annurev.neuro.27.070203.144259</a>","ista":"de Bono M, Villu Maricq A. 2005. Neuronal substrates of complex behaviors in C. elegans. Annual Review of Neuroscience. 28, 451–501.","ieee":"M. de Bono and A. Villu Maricq, “Neuronal substrates of complex behaviors in C. elegans,” <i>Annual Review of Neuroscience</i>, vol. 28. Annual Reviews, pp. 451–501, 2005.","chicago":"Bono, Mario de, and Andres Villu Maricq. “Neuronal Substrates of Complex Behaviors in C. Elegans.” <i>Annual Review of Neuroscience</i>. Annual Reviews, 2005. <a href=\"https://doi.org/10.1146/annurev.neuro.27.070203.144259\">https://doi.org/10.1146/annurev.neuro.27.070203.144259</a>.","mla":"de Bono, Mario, and Andres Villu Maricq. “Neuronal Substrates of Complex Behaviors in C. Elegans.” <i>Annual Review of Neuroscience</i>, vol. 28, Annual Reviews, 2005, pp. 451–501, doi:<a href=\"https://doi.org/10.1146/annurev.neuro.27.070203.144259\">10.1146/annurev.neuro.27.070203.144259</a>.","short":"M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501."},"date_created":"2019-03-21T09:31:29Z","abstract":[{"text":"A current challenge in neuroscience is to bridge the gaps between genes, proteins, neurons, neural circuits, and behavior in a single animal model. The nematode Caenorhabditis elegans has unique features that facilitate this synthesis. Its nervous system includes exactly 302 neurons, and their pattern of synaptic connectivity is known. With only five olfactory neurons, C. elegans can dynamically respond to dozens of attractive and repellant odors. Thermosensory neurons enable the nematode to remember its cultivation temperature and to track narrow isotherms. Polymodal sensory neurons detect a wide range of nociceptive cues and signal robust escape responses. Pairing of sensory stimuli leads to long-lived changes in behavior consistent with associative learning. Worms exhibit social behaviors and complex ultradian rhythms driven by Ca2+ oscillators with clock-like properties. Genetic analysis has identified gene products required for nervous system function and elucidated the molecular and neural bases of behaviors.","lang":"eng"}],"page":"451-501","date_published":"2005-07-21T00:00:00Z","status":"public","publication":"Annual Review of Neuroscience","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","_id":"6153","intvolume":"        28","language":[{"iso":"eng"}]},{"oa_version":"None","author":[{"full_name":"Cheung, Benny H.H.","last_name":"Cheung","first_name":"Benny H.H."},{"full_name":"Cohen, Merav","first_name":"Merav","last_name":"Cohen"},{"first_name":"Candida","last_name":"Rogers","full_name":"Rogers, Candida"},{"full_name":"Albayram, Onder","first_name":"Onder","last_name":"Albayram"},{"orcid":"0000-0001-8347-0443","full_name":"de Bono, Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","first_name":"Mario","last_name":"de Bono"}],"month":"05","date_created":"2019-03-21T09:37:48Z","citation":{"ama":"Cheung BHH, Cohen M, Rogers C, Albayram O, de Bono M. Experience-dependent modulation of C. elegans behavior by ambient oxygen. <i>Current Biology</i>. 2005;15(10):905-917. doi:<a href=\"https://doi.org/10.1016/j.cub.2005.04.017\">10.1016/j.cub.2005.04.017</a>","apa":"Cheung, B. H. H., Cohen, M., Rogers, C., Albayram, O., &#38; de Bono, M. (2005). Experience-dependent modulation of C. elegans behavior by ambient oxygen. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2005.04.017\">https://doi.org/10.1016/j.cub.2005.04.017</a>","ista":"Cheung BHH, Cohen M, Rogers C, Albayram O, de Bono M. 2005. Experience-dependent modulation of C. elegans behavior by ambient oxygen. Current Biology. 15(10), 905–917.","ieee":"B. H. H. Cheung, M. Cohen, C. Rogers, O. Albayram, and M. de Bono, “Experience-dependent modulation of C. elegans behavior by ambient oxygen,” <i>Current Biology</i>, vol. 15, no. 10. Elsevier, pp. 905–917, 2005.","chicago":"Cheung, Benny H.H., Merav Cohen, Candida Rogers, Onder Albayram, and Mario de Bono. “Experience-Dependent Modulation of C. Elegans Behavior by Ambient Oxygen.” <i>Current Biology</i>. Elsevier, 2005. <a href=\"https://doi.org/10.1016/j.cub.2005.04.017\">https://doi.org/10.1016/j.cub.2005.04.017</a>.","mla":"Cheung, Benny H. H., et al. “Experience-Dependent Modulation of C. Elegans Behavior by Ambient Oxygen.” <i>Current Biology</i>, vol. 15, no. 10, Elsevier, 2005, pp. 905–17, doi:<a href=\"https://doi.org/10.1016/j.cub.2005.04.017\">10.1016/j.cub.2005.04.017</a>.","short":"B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917."},"extern":"1","issue":"10","publication":"Current Biology","date_published":"2005-05-24T00:00:00Z","status":"public","page":"905-917","_id":"6154","language":[{"iso":"eng"}],"intvolume":"        15","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","external_id":{"pmid":["15916947"]},"pmid":1,"doi":"10.1016/j.cub.2005.04.017","title":"Experience-dependent modulation of C. elegans behavior by ambient oxygen","date_updated":"2021-01-12T08:06:24Z","publisher":"Elsevier","day":"24","publication_identifier":{"issn":["0960-9822"]},"publication_status":"published","year":"2005","type":"journal_article","volume":15},{"page":"154-159","issue":"2","_id":"9491","language":[{"iso":"eng"}],"month":"01","author":[{"full_name":"Tran, Robert K.","first_name":"Robert K.","last_name":"Tran"},{"first_name":"Jorja G.","last_name":"Henikoff","full_name":"Henikoff, Jorja G."},{"last_name":"Zilberman","first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel"},{"last_name":"Ditt","first_name":"Renata F.","full_name":"Ditt, Renata F."},{"last_name":"Jacobsen","first_name":"Steven E.","full_name":"Jacobsen, Steven E."},{"last_name":"Henikoff","first_name":"Steven","full_name":"Henikoff, Steven"}],"article_type":"original","citation":{"ama":"Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. <i>Current Biology</i>. 2005;15(2):154-159. doi:<a href=\"https://doi.org/10.1016/j.cub.2005.01.008\">10.1016/j.cub.2005.01.008</a>","apa":"Tran, R. K., Henikoff, J. G., Zilberman, D., Ditt, R. F., Jacobsen, S. E., &#38; Henikoff, S. (2005). DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2005.01.008\">https://doi.org/10.1016/j.cub.2005.01.008</a>","ista":"Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. 2005. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. 15(2), 154–159.","ieee":"R. K. Tran, J. G. Henikoff, D. Zilberman, R. F. Ditt, S. E. Jacobsen, and S. Henikoff, “DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes,” <i>Current Biology</i>, vol. 15, no. 2. Elsevier, pp. 154–159, 2005.","chicago":"Tran, Robert K., Jorja G. Henikoff, Daniel Zilberman, Renata F. Ditt, Steven E. Jacobsen, and Steven Henikoff. “DNA Methylation Profiling Identifies CG Methylation Clusters in Arabidopsis Genes.” <i>Current Biology</i>. Elsevier, 2005. <a href=\"https://doi.org/10.1016/j.cub.2005.01.008\">https://doi.org/10.1016/j.cub.2005.01.008</a>.","mla":"Tran, Robert K., et al. “DNA Methylation Profiling Identifies CG Methylation Clusters in Arabidopsis Genes.” <i>Current Biology</i>, vol. 15, no. 2, Elsevier, 2005, pp. 154–59, doi:<a href=\"https://doi.org/10.1016/j.cub.2005.01.008\">10.1016/j.cub.2005.01.008</a>.","short":"R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159."},"year":"2005","article_processing_charge":"No","oa":1,"title":"DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes","doi":"10.1016/j.cub.2005.01.008","external_id":{"pmid":["15668172 "]},"publication_identifier":{"issn":["0960-9822"],"eissn":["1879-0445"]},"day":"26","date_updated":"2021-12-14T09:12:26Z","abstract":[{"lang":"eng","text":"Cytosine DNA methylation in vertebrates is widespread, but methylation in plants is found almost exclusively at transposable elements and repetitive DNA [1]. Within regions of methylation, methylcytosines are typically found in CG, CNG, and asymmetric contexts. CG sites are maintained by a plant homolog of mammalian Dnmt1 acting on hemi-methylated DNA after replication. Methylation of CNG and asymmetric sites appears to be maintained at each cell cycle by other mechanisms. We report a new type of DNA methylation in Arabidopsis, dense CG methylation clusters found at scattered sites throughout the genome. These clusters lack non-CG methylation and are preferentially found in genes, although they are relatively deficient toward the 5′ end. CG methylation clusters are present in lines derived from different accessions and in mutants that eliminate de novo methylation, indicating that CG methylation clusters are stably maintained at specific sites. Because 5-methylcytosine is mutagenic, the appearance of CG methylation clusters over evolutionary time predicts a genome-wide deficiency of CG dinucleotides and an excess of C(A/T)G trinucleotides within transcribed regions. This is exactly what we find, implying that CG methylation clusters have contributed profoundly to plant gene evolution. We suggest that CG methylation clusters silence cryptic promoters that arise sporadically within transcription units."}],"date_published":"2005-01-26T00:00:00Z","status":"public","publication":"Current Biology","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","intvolume":"        15","oa_version":"Published Version","extern":"1","scopus_import":"1","date_created":"2021-06-07T10:24:30Z","main_file_link":[{"url":"https://doi.org/10.1016/j.cub.2005.01.008","open_access":"1"}],"volume":15,"type":"journal_article","department":[{"_id":"DaZi"}],"pmid":1,"quality_controlled":"1","publication_status":"published","publisher":"Elsevier"},{"year":"2005","oa":1,"article_processing_charge":"No","external_id":{"pmid":["16277745"]},"title":"Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis","doi":"10.1186/gb-2005-6-11-r90","date_updated":"2021-12-14T09:09:41Z","publication_identifier":{"issn":["1474-760X"],"eissn":["1465-6906"]},"day":"19","issue":"11","language":[{"iso":"eng"}],"_id":"9514","article_number":"R90","month":"10","author":[{"last_name":"Tran","first_name":"Robert K.","full_name":"Tran, Robert K."},{"orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel","first_name":"Daniel","last_name":"Zilberman","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"},{"full_name":"de Bustos, Cecilia","last_name":"de Bustos","first_name":"Cecilia"},{"first_name":"Renata F.","last_name":"Ditt","full_name":"Ditt, Renata F."},{"full_name":"Henikoff, Jorja G.","last_name":"Henikoff","first_name":"Jorja G."},{"last_name":"Lindroth","first_name":"Anders M.","full_name":"Lindroth, Anders M."},{"last_name":"Delrow","first_name":"Jeffrey","full_name":"Delrow, Jeffrey"},{"last_name":"Boyle","first_name":"Tom","full_name":"Boyle, Tom"},{"full_name":"Kwong, Samson","first_name":"Samson","last_name":"Kwong"},{"first_name":"Terri D.","last_name":"Bryson","full_name":"Bryson, Terri D."},{"last_name":"Jacobsen","first_name":"Steven E.","full_name":"Jacobsen, Steven E."},{"full_name":"Henikoff, Steven","last_name":"Henikoff","first_name":"Steven"}],"citation":{"ieee":"R. K. Tran <i>et al.</i>, “Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis,” <i>Genome Biology</i>, vol. 6, no. 11. Springer Nature, 2005.","chicago":"Tran, Robert K., Daniel Zilberman, Cecilia de Bustos, Renata F. Ditt, Jorja G. Henikoff, Anders M. Lindroth, Jeffrey Delrow, et al. “Chromatin and SiRNA Pathways Cooperate to Maintain DNA Methylation of Small Transposable Elements in Arabidopsis.” <i>Genome Biology</i>. Springer Nature, 2005. <a href=\"https://doi.org/10.1186/gb-2005-6-11-r90\">https://doi.org/10.1186/gb-2005-6-11-r90</a>.","short":"R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).","mla":"Tran, Robert K., et al. “Chromatin and SiRNA Pathways Cooperate to Maintain DNA Methylation of Small Transposable Elements in Arabidopsis.” <i>Genome Biology</i>, vol. 6, no. 11, R90, Springer Nature, 2005, doi:<a href=\"https://doi.org/10.1186/gb-2005-6-11-r90\">10.1186/gb-2005-6-11-r90</a>.","ama":"Tran RK, Zilberman D, de Bustos C, et al. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. <i>Genome Biology</i>. 2005;6(11). doi:<a href=\"https://doi.org/10.1186/gb-2005-6-11-r90\">10.1186/gb-2005-6-11-r90</a>","apa":"Tran, R. K., Zilberman, D., de Bustos, C., Ditt, R. F., Henikoff, J. G., Lindroth, A. M., … Henikoff, S. (2005). Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. <i>Genome Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1186/gb-2005-6-11-r90\">https://doi.org/10.1186/gb-2005-6-11-r90</a>","ista":"Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. 2005. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 6(11), R90."},"article_type":"original","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1186/gb-2005-6-11-r90"}],"volume":6,"type":"journal_article","pmid":1,"quality_controlled":"1","department":[{"_id":"DaZi"}],"publisher":"Springer Nature","publication_status":"published","status":"public","date_published":"2005-10-19T00:00:00Z","publication":"Genome Biology","abstract":[{"text":"Background:\r\nDNA methylation occurs at preferred sites in eukaryotes. In Arabidopsis, DNA cytosine methylation is maintained by three subfamilies of methyltransferases with distinct substrate specificities and different modes of action. Targeting of cytosine methylation at selected loci has been found to sometimes involve histone H3 methylation and small interfering (si)RNAs. However, the relationship between different cytosine methylation pathways and their preferred targets is not known.\r\nResults:\r\nWe used a microarray-based profiling method to explore the involvement of Arabidopsis CMT3 and DRM DNA methyltransferases, a histone H3 lysine-9 methyltransferase (KYP) and an Argonaute-related siRNA silencing component (AGO4) in methylating target loci. We found that KYP targets are also CMT3 targets, suggesting that histone methylation maintains CNG methylation genome-wide. CMT3 and KYP targets show similar proximal distributions that correspond to the overall distribution of transposable elements of all types, whereas DRM targets are distributed more distally along the chromosome. We find an inverse relationship between element size and loss of methylation in ago4 and drm mutants.\r\nConclusion:\r\nWe conclude that the targets of both DNA methylation and histone H3K9 methylation pathways are transposable elements genome-wide, irrespective of element type and position. Our findings also suggest that RNA-directed DNA methylation is required to silence isolated elements that may be too small to be maintained in a silent state by a chromatin-based mechanism alone. Thus, parallel pathways would be needed to maintain silencing of transposable elements.","lang":"eng"}],"intvolume":"         6","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","oa_version":"Published Version","date_created":"2021-06-07T13:12:41Z","scopus_import":"1","extern":"1"},{"abstract":[{"lang":"eng","text":"Eukaryotic organisms have the remarkable ability to inherit states of gene activity without altering the underlying DNA sequence. This epigenetic inheritance can persist over thousands of years, providing an alternative to genetic mutations as a substrate for natural selection. Epigenetic inheritance might be propagated by differences in DNA methylation, post-translational histone modifications, and deposition of histone variants. Mounting evidence also indicates that small interfering RNA (siRNA)-mediated mechanisms play central roles in setting up and maintaining states of gene activity. Much of the epigenetic machinery of many organisms, including Arabidopsis, appears to be directed at silencing viruses and transposable elements, with epigenetic regulation of endogenous genes being mostly derived from such processes."}],"status":"public","date_published":"2005-10-01T00:00:00Z","publication":"Current Opinion in Genetics and Development","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","intvolume":"        15","oa_version":"None","scopus_import":"1","extern":"1","date_created":"2021-06-08T09:05:56Z","volume":15,"type":"journal_article","department":[{"_id":"DaZi"}],"pmid":1,"quality_controlled":"1","publication_status":"published","publisher":"Elsevier","page":"557-562","issue":"5","language":[{"iso":"eng"}],"_id":"9529","month":"10","author":[{"full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","last_name":"Zilberman","first_name":"Daniel"},{"full_name":"Henikoff, Steven","first_name":"Steven","last_name":"Henikoff"}],"article_type":"review","citation":{"chicago":"Zilberman, Daniel, and Steven Henikoff. “Epigenetic Inheritance in Arabidopsis: Selective Silence.” <i>Current Opinion in Genetics and Development</i>. Elsevier, 2005. <a href=\"https://doi.org/10.1016/j.gde.2005.07.002\">https://doi.org/10.1016/j.gde.2005.07.002</a>.","ieee":"D. Zilberman and S. Henikoff, “Epigenetic inheritance in Arabidopsis: Selective silence,” <i>Current Opinion in Genetics and Development</i>, vol. 15, no. 5. Elsevier, pp. 557–562, 2005.","short":"D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.","mla":"Zilberman, Daniel, and Steven Henikoff. “Epigenetic Inheritance in Arabidopsis: Selective Silence.” <i>Current Opinion in Genetics and Development</i>, vol. 15, no. 5, Elsevier, 2005, pp. 557–62, doi:<a href=\"https://doi.org/10.1016/j.gde.2005.07.002\">10.1016/j.gde.2005.07.002</a>.","ama":"Zilberman D, Henikoff S. Epigenetic inheritance in Arabidopsis: Selective silence. <i>Current Opinion in Genetics and Development</i>. 2005;15(5):557-562. doi:<a href=\"https://doi.org/10.1016/j.gde.2005.07.002\">10.1016/j.gde.2005.07.002</a>","ista":"Zilberman D, Henikoff S. 2005. Epigenetic inheritance in Arabidopsis: Selective silence. Current Opinion in Genetics and Development. 15(5), 557–562.","apa":"Zilberman, D., &#38; Henikoff, S. (2005). Epigenetic inheritance in Arabidopsis: Selective silence. <i>Current Opinion in Genetics and Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.gde.2005.07.002\">https://doi.org/10.1016/j.gde.2005.07.002</a>"},"year":"2005","article_processing_charge":"No","title":"Epigenetic inheritance in Arabidopsis: Selective silence","doi":"10.1016/j.gde.2005.07.002","external_id":{"pmid":["16085410"]},"publication_identifier":{"issn":["0959-437X"]},"date_updated":"2021-12-14T09:13:13Z"},{"page":"347-380","language":[{"iso":"eng"}],"_id":"11120","month":"11","author":[{"first_name":"Martin W","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W"},{"first_name":"Tobias C.","last_name":"Walther","full_name":"Walther, Tobias C."},{"last_name":"Mattaj","first_name":"Iain W.","full_name":"Mattaj, Iain W."}],"article_type":"original","keyword":["Cell Biology","Developmental Biology"],"citation":{"ieee":"M. Hetzer, T. C. Walther, and I. W. Mattaj, “Pushing the envelope: Structure, function, and dynamics of the nuclear periphery,” <i>Annual Review of Cell and Developmental Biology</i>, vol. 21. Annual Reviews, pp. 347–380, 2005.","chicago":"Hetzer, Martin, Tobias C. Walther, and Iain W. Mattaj. “Pushing the Envelope: Structure, Function, and Dynamics of the Nuclear Periphery.” <i>Annual Review of Cell and Developmental Biology</i>. Annual Reviews, 2005. <a href=\"https://doi.org/10.1146/annurev.cellbio.21.090704.151152\">https://doi.org/10.1146/annurev.cellbio.21.090704.151152</a>.","short":"M. Hetzer, T.C. Walther, I.W. Mattaj, Annual Review of Cell and Developmental Biology 21 (2005) 347–380.","mla":"Hetzer, Martin, et al. “Pushing the Envelope: Structure, Function, and Dynamics of the Nuclear Periphery.” <i>Annual Review of Cell and Developmental Biology</i>, vol. 21, Annual Reviews, 2005, pp. 347–80, doi:<a href=\"https://doi.org/10.1146/annurev.cellbio.21.090704.151152\">10.1146/annurev.cellbio.21.090704.151152</a>.","ama":"Hetzer M, Walther TC, Mattaj IW. Pushing the envelope: Structure, function, and dynamics of the nuclear periphery. <i>Annual Review of Cell and Developmental Biology</i>. 2005;21:347-380. doi:<a href=\"https://doi.org/10.1146/annurev.cellbio.21.090704.151152\">10.1146/annurev.cellbio.21.090704.151152</a>","apa":"Hetzer, M., Walther, T. C., &#38; Mattaj, I. W. (2005). Pushing the envelope: Structure, function, and dynamics of the nuclear periphery. <i>Annual Review of Cell and Developmental Biology</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev.cellbio.21.090704.151152\">https://doi.org/10.1146/annurev.cellbio.21.090704.151152</a>","ista":"Hetzer M, Walther TC, Mattaj IW. 2005. Pushing the envelope: Structure, function, and dynamics of the nuclear periphery. Annual Review of Cell and Developmental Biology. 21, 347–380."},"year":"2005","article_processing_charge":"No","title":"Pushing the envelope: Structure, function, and dynamics of the nuclear periphery","doi":"10.1146/annurev.cellbio.21.090704.151152","external_id":{"pmid":["16212499"]},"publication_identifier":{"eissn":["1530-8995"],"issn":["1081-0706"]},"day":"10","date_updated":"2022-07-18T08:57:34Z","abstract":[{"text":"The nuclear envelope (NE) is a highly specialized membrane that delineates the eukaryotic cell nucleus. It is composed of the inner and outer nuclear membranes, nuclear pore complexes (NPCs) and, in metazoa, the lamina. The NE not only regulates the trafficking of macromolecules between nucleoplasm and cytosol but also provides anchoring sites for chromatin and the cytoskeleton. Through these interactions, the NE helps position the nucleus within the cell and chromosomes within the nucleus, thereby regulating the expression of certain genes. The NE is not static, rather it is continuously remodeled during cell division. The most dramatic example of NE reorganization occurs during mitosis in metazoa when the NE undergoes a complete cycle of disassembly and reformation. Despite the importance of the NE for eukaryotic cell life, relatively little is known about its biogenesis or many of its functions. We thus are far from understanding the molecular etiology of a diverse group of NE-associated diseases.","lang":"eng"}],"date_published":"2005-11-10T00:00:00Z","status":"public","publication":"Annual Review of Cell and Developmental Biology","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","intvolume":"        21","oa_version":"None","scopus_import":"1","extern":"1","date_created":"2022-04-07T07:56:52Z","volume":21,"type":"journal_article","pmid":1,"quality_controlled":"1","publication_status":"published","publisher":"Annual Reviews"},{"year":"2005","conference":{"location":"Salzburg, Austria","name":"HYPERTEXT: Conference on Hypertext and Hypermedia","start_date":"2005-09-06","end_date":"2005-09-09"},"article_processing_charge":"No","type":"conference","quality_controlled":"1","doi":"10.1145/1083356.1083357","title":"Hyperlink analysis on the world wide web","date_updated":"2023-02-09T11:54:40Z","publisher":"Association for Computing Machinery","day":"06","publication_identifier":{"isbn":["9781595931689"]},"publication_status":"published","publication":"Proceedings of the 16th ACM conference on Hypertext and hypermedia","date_published":"2005-09-06T00:00:00Z","status":"public","page":"1-3","abstract":[{"lang":"eng","text":"We give a short survey of the use of hyperlink analysis in web search engine ranking and sketch other applications of hyperlink analysis in the web space."}],"_id":"11698","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Henzinger, Monika H","orcid":"0000-0002-5008-6530","first_name":"Monika H","last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630"}],"oa_version":"None","month":"09","date_created":"2022-07-29T10:47:23Z","citation":{"ieee":"M. H. Henzinger, “Hyperlink analysis on the world wide web,” in <i>Proceedings of the 16th ACM conference on Hypertext and hypermedia</i>, Salzburg, Austria, 2005, pp. 1–3.","chicago":"Henzinger, Monika H. “Hyperlink Analysis on the World Wide Web.” In <i>Proceedings of the 16th ACM Conference on Hypertext and Hypermedia</i>, 1–3. Association for Computing Machinery, 2005. <a href=\"https://doi.org/10.1145/1083356.1083357\">https://doi.org/10.1145/1083356.1083357</a>.","short":"M.H. Henzinger, in:, Proceedings of the 16th ACM Conference on Hypertext and Hypermedia, Association for Computing Machinery, 2005, pp. 1–3.","mla":"Henzinger, Monika H. “Hyperlink Analysis on the World Wide Web.” <i>Proceedings of the 16th ACM Conference on Hypertext and Hypermedia</i>, Association for Computing Machinery, 2005, pp. 1–3, doi:<a href=\"https://doi.org/10.1145/1083356.1083357\">10.1145/1083356.1083357</a>.","ama":"Henzinger MH. Hyperlink analysis on the world wide web. In: <i>Proceedings of the 16th ACM Conference on Hypertext and Hypermedia</i>. Association for Computing Machinery; 2005:1-3. doi:<a href=\"https://doi.org/10.1145/1083356.1083357\">10.1145/1083356.1083357</a>","apa":"Henzinger, M. H. (2005). Hyperlink analysis on the world wide web. In <i>Proceedings of the 16th ACM conference on Hypertext and hypermedia</i> (pp. 1–3). Salzburg, Austria: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/1083356.1083357\">https://doi.org/10.1145/1083356.1083357</a>","ista":"Henzinger MH. 2005. Hyperlink analysis on the world wide web. Proceedings of the 16th ACM conference on Hypertext and hypermedia. HYPERTEXT: Conference on Hypertext and Hypermedia, 1–3."},"keyword":["Hyperlink Analysis","World Wide Web"],"scopus_import":"1","extern":"1"},{"publisher":"Elsevier","publication_status":"published","quality_controlled":"1","type":"journal_article","volume":55,"main_file_link":[{"url":"https://doi.org/10.1016/j.jalgor.2004.11.001","open_access":"1"}],"date_created":"2022-08-08T12:03:00Z","scopus_import":"1","extern":"1","oa_version":"Published Version","intvolume":"        55","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Journal of Algorithms","date_published":"2005-04-01T00:00:00Z","status":"public","abstract":[{"lang":"eng","text":"We present the first polylog-competitive online algorithm for the general multicast admission control and routing problem in the throughput model. The ratio of the number of requests accepted by the optimum offline algorithm to the expected number of requests accepted by our algorithm is O((log n + log log M)(log n + log M) log n), where M is the number of multicast groups and n is the number of nodes in the graph. We show that this is close to optimum by presenting an\r\nΩ(log n log M) lower bound on this ratio for any randomized online algorithm against an oblivious adversary, when M is much larger than the link capacities. Our lower bound applies even in the restricted case where the link capacities are much larger than bandwidth requested by a single multicast. We also present a simple proof showing that it is impossible to be competitive against an adaptive online adversary.\r\nAs in the previous online routing algorithms, our algorithm uses edge-costs when deciding on which is the best path to use. In contrast to the previous competitive algorithms in the throughput model, our cost is not a direct function of the edge load. The new cost definition allows us to decouple the effects of routing and admission decisions of different multicast groups."}],"date_updated":"2023-02-21T16:33:22Z","day":"01","publication_identifier":{"issn":["0196-6774"]},"doi":"10.1016/j.jalgor.2004.11.001","title":"An online throughput-competitive algorithm for multicast routing and admission control","article_processing_charge":"No","oa":1,"year":"2005","related_material":{"record":[{"id":"11926","relation":"earlier_version","status":"public"}]},"citation":{"ieee":"A. Goel, M. H. Henzinger, and S. Plotkin, “An online throughput-competitive algorithm for multicast routing and admission control,” <i>Journal of Algorithms</i>, vol. 55, no. 1. Elsevier, pp. 1–20, 2005.","chicago":"Goel, Ashish, Monika H Henzinger, and Serge Plotkin. “An Online Throughput-Competitive Algorithm for Multicast Routing and Admission Control.” <i>Journal of Algorithms</i>. Elsevier, 2005. <a href=\"https://doi.org/10.1016/j.jalgor.2004.11.001\">https://doi.org/10.1016/j.jalgor.2004.11.001</a>.","short":"A. Goel, M.H. Henzinger, S. Plotkin, Journal of Algorithms 55 (2005) 1–20.","mla":"Goel, Ashish, et al. “An Online Throughput-Competitive Algorithm for Multicast Routing and Admission Control.” <i>Journal of Algorithms</i>, vol. 55, no. 1, Elsevier, 2005, pp. 1–20, doi:<a href=\"https://doi.org/10.1016/j.jalgor.2004.11.001\">10.1016/j.jalgor.2004.11.001</a>.","ama":"Goel A, Henzinger MH, Plotkin S. An online throughput-competitive algorithm for multicast routing and admission control. <i>Journal of Algorithms</i>. 2005;55(1):1-20. doi:<a href=\"https://doi.org/10.1016/j.jalgor.2004.11.001\">10.1016/j.jalgor.2004.11.001</a>","apa":"Goel, A., Henzinger, M. H., &#38; Plotkin, S. (2005). An online throughput-competitive algorithm for multicast routing and admission control. <i>Journal of Algorithms</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jalgor.2004.11.001\">https://doi.org/10.1016/j.jalgor.2004.11.001</a>","ista":"Goel A, Henzinger MH, Plotkin S. 2005. An online throughput-competitive algorithm for multicast routing and admission control. Journal of Algorithms. 55(1), 1–20."},"article_type":"original","author":[{"full_name":"Goel, Ashish","first_name":"Ashish","last_name":"Goel"},{"first_name":"Monika H","last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H"},{"full_name":"Plotkin, Serge","last_name":"Plotkin","first_name":"Serge"}],"month":"04","_id":"11763","language":[{"iso":"eng"}],"issue":"1","page":"1-20"},{"author":[{"full_name":"Henzinger, Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","first_name":"Monika H","last_name":"Henzinger"},{"full_name":"Chang, Bay-Wei","first_name":"Bay-Wei","last_name":"Chang"},{"first_name":"Brian","last_name":"Milch","full_name":"Milch, Brian"},{"last_name":"Brin","first_name":"Sergey","full_name":"Brin, Sergey"}],"month":"06","citation":{"ista":"Henzinger MH, Chang B-W, Milch B, Brin S. 2005. Query-free news search. World Wide Web. 8(2), 101–126.","apa":"Henzinger, M. H., Chang, B.-W., Milch, B., &#38; Brin, S. (2005). Query-free news search. <i>World Wide Web</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11280-004-4870-6\">https://doi.org/10.1007/s11280-004-4870-6</a>","ama":"Henzinger MH, Chang B-W, Milch B, Brin S. Query-free news search. <i>World Wide Web</i>. 2005;8(2):101-126. doi:<a href=\"https://doi.org/10.1007/s11280-004-4870-6\">10.1007/s11280-004-4870-6</a>","short":"M.H. Henzinger, B.-W. Chang, B. Milch, S. Brin, World Wide Web 8 (2005) 101–126.","mla":"Henzinger, Monika H., et al. “Query-Free News Search.” <i>World Wide Web</i>, vol. 8, no. 2, Springer Nature, 2005, pp. 101–26, doi:<a href=\"https://doi.org/10.1007/s11280-004-4870-6\">10.1007/s11280-004-4870-6</a>.","chicago":"Henzinger, Monika H, Bay-Wei Chang, Brian Milch, and Sergey Brin. “Query-Free News Search.” <i>World Wide Web</i>. Springer Nature, 2005. <a href=\"https://doi.org/10.1007/s11280-004-4870-6\">https://doi.org/10.1007/s11280-004-4870-6</a>.","ieee":"M. H. Henzinger, B.-W. Chang, B. Milch, and S. Brin, “Query-free news search,” <i>World Wide Web</i>, vol. 8, no. 2. Springer Nature, pp. 101–126, 2005."},"article_type":"original","issue":"2","page":"101-126","_id":"11904","language":[{"iso":"eng"}],"doi":"10.1007/s11280-004-4870-6","title":"Query-free news search","date_updated":"2023-02-21T16:30:56Z","day":"01","publication_identifier":{"issn":["1386-145X"],"eissn":["1573-1413"]},"year":"2005","related_material":{"record":[{"id":"11860","relation":"earlier_version","status":"public"}]},"article_processing_charge":"No","oa_version":"None","date_created":"2022-08-17T11:16:56Z","scopus_import":"1","extern":"1","publication":"World Wide Web","status":"public","date_published":"2005-06-01T00:00:00Z","abstract":[{"text":"Many daily activities present information in the form of a stream of text, and often people can benefit from additional information on the topic discussed. TV broadcast news can be treated as one such stream of text; in this paper we discuss finding news articles on the web that are relevant to news currently being broadcast.\r\n\r\nWe evaluated a variety of algorithms for this problem, looking at the impact of inverse document frequency, stemming, compounds, history, and query length on the relevance and coverage of news articles returned in real time during a broadcast. We also evaluated several postprocessing techniques for improving the precision, including reranking using additional terms, reranking by document similarity, and filtering on document similarity. For the best algorithm, 84–91% of the articles found were relevant, with at least 64% of the articles being on the exact topic of the broadcast. In addition, a relevant article was found for at least 70% of the topics.","lang":"eng"}],"intvolume":"         8","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","publisher":"Springer Nature","publication_status":"published","type":"journal_article","volume":8}]