[{"author":[{"full_name":"Berrisford, John M","last_name":"Berrisford","first_name":"John"},{"first_name":"Christopher","last_name":"Thompson","full_name":"Thompson, Christopher J"},{"full_name":"Leonid Sazanov","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","first_name":"Leonid A","last_name":"Sazanov"}],"publication_status":"published","publist_id":"5115","doi":"10.1021/bi801160u","publisher":"ACS","extern":1,"intvolume":"        47","quality_controlled":0,"_id":"1967","acknowledgement":"This research was funded by the Medical Research Council.","status":"public","date_updated":"2021-01-12T06:54:24Z","issue":"39","date_created":"2018-12-11T11:54:57Z","date_published":"2008-09-30T00:00:00Z","abstract":[{"text":"Complex I of respiratory chains transfers electrons from NADH to ubiquinone, coupled to the translocation of protons across the membrane. Two alternative coupling mechanisms are being discussed, redox-driven or conformation-driven. Using &quot;zero-length&quot; cross-linking reagent and isolated hydrophilic domains of complex I from Escherichia coli and Thermus thermophilus, we show that the pattern of cross-links between subunits changes significantly in the presence of NADH. Similar observations were made previously with intact purified E. coli and bovine complex I. This indicates that, upon reduction with NADH, similar conformational changes are likely to occur in the intact enzyme and in the isolated hydrophilic domain (which can be used for crystallographic studies). Within intact E. coli complex I, the cross-link between the hydrophobic subunits NuoA and NuoJ was abolished in the presence of NADH, indicating that conformational changes extend into the membrane domain, possibly as part of a coupling mechanism. Unexpectedly, in the absence of any chemical cross-linker, incubation of complex I with NADH resulted in covalent cross-links between subunits Nqo4 (NuoCD) and Nqo6 (NuoB), as well as between Nqo6 and Nqo9. Their formation depends on the presence of oxygen and so is likely a result of oxidative damage via reactive oxygen species (ROS) induced cross-linking. In addition, ROS- and metal ion-dependent proteolysis of these subunits (as well as Nqo3) is observed. Fe-S cluster N2 is coordinated between subunits Nqo4 and Nqo6 and could be involved in these processes. Our observations suggest that oxidative damage to complex I in vivo may include not only side-chain modifications but also protein cross-linking and degradation.","lang":"eng"}],"day":"30","page":"10262 - 10270","title":"Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus","publication":"Biochemistry","volume":47,"year":"2008","month":"09","type":"journal_article","citation":{"chicago":"Berrisford, John, Christopher Thompson, and Leonid A Sazanov. “Chemical and NADH-Induced, ROS-Dependent, Cross-Linking between Sublimits of Complex I from Escherichia Coli and Thermus Thermophilus.” <i>Biochemistry</i>. ACS, 2008. <a href=\"https://doi.org/10.1021/bi801160u\">https://doi.org/10.1021/bi801160u</a>.","ista":"Berrisford J, Thompson C, Sazanov LA. 2008. Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus. Biochemistry. 47(39), 10262–10270.","short":"J. Berrisford, C. Thompson, L.A. Sazanov, Biochemistry 47 (2008) 10262–10270.","ieee":"J. Berrisford, C. Thompson, and L. A. Sazanov, “Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus,” <i>Biochemistry</i>, vol. 47, no. 39. ACS, pp. 10262–10270, 2008.","mla":"Berrisford, John, et al. “Chemical and NADH-Induced, ROS-Dependent, Cross-Linking between Sublimits of Complex I from Escherichia Coli and Thermus Thermophilus.” <i>Biochemistry</i>, vol. 47, no. 39, ACS, 2008, pp. 10262–70, doi:<a href=\"https://doi.org/10.1021/bi801160u\">10.1021/bi801160u</a>.","apa":"Berrisford, J., Thompson, C., &#38; Sazanov, L. A. (2008). Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus. <i>Biochemistry</i>. ACS. <a href=\"https://doi.org/10.1021/bi801160u\">https://doi.org/10.1021/bi801160u</a>","ama":"Berrisford J, Thompson C, Sazanov LA. Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus. <i>Biochemistry</i>. 2008;47(39):10262-10270. doi:<a href=\"https://doi.org/10.1021/bi801160u\">10.1021/bi801160u</a>"}},{"publication_status":"published","author":[{"last_name":"Morgan","first_name":"David","full_name":"Morgan, David J"},{"first_name":"Leonid A","last_name":"Sazanov","orcid":"0000-0002-0977-7989","full_name":"Leonid Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87"}],"publist_id":"5116","doi":"10.1016/j.bbabio.2008.03.023","publisher":"Elsevier","extern":1,"intvolume":"      1777","_id":"1968","quality_controlled":0,"acknowledgement":"This work was supported by the Medical Research Council.","status":"public","date_updated":"2021-01-12T06:54:24Z","date_created":"2018-12-11T11:54:58Z","issue":"7-8","date_published":"2008-07-01T00:00:00Z","abstract":[{"lang":"eng","text":"\n\nComplex I (NADH:ubiquinone oxidoreductase) is the largest protein complex of bacterial and mitochondrial respiratory chains. The first three-dimensional structure of bacterial complex I in vitrified ice was determined by electron cryo-microscopy and single particle analysis. The structure of the Escherichia coli enzyme incubated with either NAD+ (as a reference) or NADH was calculated to 35 and 39 Å resolution, respectively. The X-ray structure of the peripheral arm of Thermus thermophilus complex I was docked into the reference EM structure. The model obtained indicates that Fe-S cluster N2 is close to the membrane domain interface, allowing for effective electron transfer to membrane-embedded quinone. At the current resolution, the structures in the presence of NAD+ or NADH are similar. Additionally, side-view class averages were calculated for the negatively stained bovine enzyme. The structures of bovine complex I in the presence of either NAD+ or NADH also appeared to be similar. These observations indicate that conformational changes upon reduction with NADH, suggested to occur by a range of studies, are smaller than had been thought previously. The model of the entire bacterial complex I could be built from the crystal structures of subcomplexes using the EM envelope described here."}],"day":"01","page":"711 - 718","title":"Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides","publication":"Biochimica et Biophysica Acta - Bioenergetics","year":"2008","volume":1777,"month":"07","type":"journal_article","citation":{"ama":"Morgan D, Sazanov LA. Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. 2008;1777(7-8):711-718. doi:<a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">10.1016/j.bbabio.2008.03.023</a>","apa":"Morgan, D., &#38; Sazanov, L. A. (2008). Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">https://doi.org/10.1016/j.bbabio.2008.03.023</a>","mla":"Morgan, David, and Leonid A. Sazanov. “Three-Dimensional Structure of Respiratory Complex I from Escherichia Coli in Ice in the Presence of Nucleotides.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1777, no. 7–8, Elsevier, 2008, pp. 711–18, doi:<a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">10.1016/j.bbabio.2008.03.023</a>.","ieee":"D. Morgan and L. A. Sazanov, “Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides,” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1777, no. 7–8. Elsevier, pp. 711–718, 2008.","short":"D. Morgan, L.A. Sazanov, Biochimica et Biophysica Acta - Bioenergetics 1777 (2008) 711–718.","ista":"Morgan D, Sazanov LA. 2008. Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides. Biochimica et Biophysica Acta - Bioenergetics. 1777(7–8), 711–718.","chicago":"Morgan, David, and Leonid A Sazanov. “Three-Dimensional Structure of Respiratory Complex I from Escherichia Coli in Ice in the Presence of Nucleotides.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">https://doi.org/10.1016/j.bbabio.2008.03.023</a>."}},{"type":"journal_article","month":"05","volume":320,"year":"2008","citation":{"mla":"Loose, Martin, et al. “Spatial Regulators for Bacterial Cell Division Self-Organize into Surface Waves in Vitro.” <i>Science</i>, vol. 320, no. 5877, American Association for the Advancement of Science, 2008, pp. 789–92, doi:<a href=\"https://doi.org/10.1126/science.1154413\">10.1126/science.1154413</a>.","ieee":"M. Loose, E. Fischer Friedrich, J. Ries, K. Kruse, and P. Schwille, “Spatial regulators for bacterial cell division self-organize into surface waves in vitro,” <i>Science</i>, vol. 320, no. 5877. American Association for the Advancement of Science, pp. 789–792, 2008.","short":"M. Loose, E. Fischer Friedrich, J. Ries, K. Kruse, P. Schwille, Science 320 (2008) 789–792.","ama":"Loose M, Fischer Friedrich E, Ries J, Kruse K, Schwille P. Spatial regulators for bacterial cell division self-organize into surface waves in vitro. <i>Science</i>. 2008;320(5877):789-792. doi:<a href=\"https://doi.org/10.1126/science.1154413\">10.1126/science.1154413</a>","apa":"Loose, M., Fischer Friedrich, E., Ries, J., Kruse, K., &#38; Schwille, P. (2008). Spatial regulators for bacterial cell division self-organize into surface waves in vitro. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1154413\">https://doi.org/10.1126/science.1154413</a>","chicago":"Loose, Martin, Elisabeth Fischer Friedrich, Jonas Ries, Karsten Kruse, and Petra Schwille. “Spatial Regulators for Bacterial Cell Division Self-Organize into Surface Waves in Vitro.” <i>Science</i>. American Association for the Advancement of Science, 2008. <a href=\"https://doi.org/10.1126/science.1154413\">https://doi.org/10.1126/science.1154413</a>.","ista":"Loose M, Fischer Friedrich E, Ries J, Kruse K, Schwille P. 2008. Spatial regulators for bacterial cell division self-organize into surface waves in vitro. Science. 320(5877), 789–792."},"date_published":"2008-05-09T00:00:00Z","date_created":"2018-12-11T11:55:02Z","issue":"5877","status":"public","date_updated":"2021-01-12T06:54:30Z","title":"Spatial regulators for bacterial cell division self-organize into surface waves in vitro","publication":"Science","page":"789 - 792","day":"09","abstract":[{"text":"In the bacterium Escherichia coli, the Min proteins oscillate between the cell poles to select the cell center as division site. This dynamic pattern has been proposed to arise by self-organization of these proteins, and several models have suggested a reaction-diffusion type mechanism. Here, we found that the Min proteins spontaneously formed planar surface waves on a flat membrane in vitro. The formation and maintenance of these patterns, which extended for hundreds of micrometers, required adenosine 5′-triphosphate (ATP), and they persisted for hours. We present a reaction-diffusion model of the MinD and MinE dynamics that accounts for our experimental observations and also captures the in vivo oscillations.","lang":"eng"}],"acknowledgement":"This work was supported by the Max-Planck-Society (M.L., P.S., E.F.). ","_id":"1982","quality_controlled":0,"intvolume":"       320","extern":1,"publication_status":"published","author":[{"first_name":"Martin","last_name":"Loose","orcid":"0000-0001-7309-9724","full_name":"Martin Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Fischer Friedrich","first_name":"Elisabeth","full_name":"Fischer-Friedrich, Elisabeth"},{"full_name":"Ries, Jonas ","first_name":"Jonas","last_name":"Ries"},{"full_name":"Kruse, Karsten","first_name":"Karsten","last_name":"Kruse"},{"full_name":"Schwille, Petra ","first_name":"Petra","last_name":"Schwille"}],"publisher":"American Association for the Advancement of Science","doi":"10.1126/science.1154413","publist_id":"5101"},{"day":"01","abstract":[{"text":"Population genetics models show that, under certain conditions, the X chromosome is expected to be under more efficient selection than the autosomes. This could lead to 'faster-X evolution', if a large proportion of mutations are fixed by positive selection, as suggested by recent studies in Drosophila. We used a multispecies approach to test this: Muller's element D, an autosomal arm, is fused to the ancestral X chromosome in Drosophila pseudoobscura and its sister species, Drosophila affinis. We tested whether the same set of genes had higher rates of non-synonymous evolution when they were X-linked (in the D. pseudoobscura/D. affinis comparison) than when they were autosomal (in Drosophila melanogaster/Drosophila yakuba). Although not significant, our results suggest this may be the case, but only for genes under particularly strong positive selection/weak purifying selection. They also suggest that genes that have become X-linked have higher levels of codon bias and slower synonymous site evolution, consistent with more effective selection on codon usage at X-linked sites.","lang":"eng"}],"title":"A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila","publication":"Genetical Research","page":"421 - 431","status":"public","date_updated":"2021-01-12T06:55:05Z","date_published":"2008-10-01T00:00:00Z","issue":"5","date_created":"2018-12-11T11:55:30Z","citation":{"chicago":"Vicoso, Beatriz, Penelope Haddrill, and Brian Charlesworth. “A Multispecies Approach for Comparing Sequence Evolution of X-Linked and Autosomal Sites in Drosophila.” <i>Genetical Research</i>. Cambridge University Press, 2008. <a href=\"https://doi.org/10.1017/S0016672308009804\">https://doi.org/10.1017/S0016672308009804</a>.","ista":"Vicoso B, Haddrill P, Charlesworth B. 2008. A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. Genetical Research. 90(5), 421–431.","short":"B. Vicoso, P. Haddrill, B. Charlesworth, Genetical Research 90 (2008) 421–431.","ieee":"B. Vicoso, P. Haddrill, and B. Charlesworth, “A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila,” <i>Genetical Research</i>, vol. 90, no. 5. Cambridge University Press, pp. 421–431, 2008.","mla":"Vicoso, Beatriz, et al. “A Multispecies Approach for Comparing Sequence Evolution of X-Linked and Autosomal Sites in Drosophila.” <i>Genetical Research</i>, vol. 90, no. 5, Cambridge University Press, 2008, pp. 421–31, doi:<a href=\"https://doi.org/10.1017/S0016672308009804\">10.1017/S0016672308009804</a>.","apa":"Vicoso, B., Haddrill, P., &#38; Charlesworth, B. (2008). A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. <i>Genetical Research</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S0016672308009804\">https://doi.org/10.1017/S0016672308009804</a>","ama":"Vicoso B, Haddrill P, Charlesworth B. A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. <i>Genetical Research</i>. 2008;90(5):421-431. doi:<a href=\"https://doi.org/10.1017/S0016672308009804\">10.1017/S0016672308009804</a>"},"volume":90,"year":"2008","type":"journal_article","month":"10","doi":"10.1017/S0016672308009804","publist_id":"4972","publisher":"Cambridge University Press","publication_status":"published","author":[{"orcid":"0000-0002-4579-8306","full_name":"Beatriz Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","first_name":"Beatriz","last_name":"Vicoso"},{"last_name":"Haddrill","first_name":"Penelope","full_name":"Haddrill, Penelope R"},{"first_name":"Brian","last_name":"Charlesworth","full_name":"Charlesworth, Brian"}],"intvolume":"        90","extern":1,"acknowledgement":"B.V. was supported by the Portuguese Foundation for Science and Technology, P.R.H. is supported by the Natural Environmental Research Council (UK) and B.C. was supported by the Royal Society (UK)","_id":"2065","quality_controlled":0},{"oa_version":"None","citation":{"apa":"Wei, Y., Klajn, R., Pinchuk, A. O., &#38; Grzybowski, B. A. (2008). Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers.” <i>Small</i>. Wiley. <a href=\"https://doi.org/10.1002/smll.200800511\">https://doi.org/10.1002/smll.200800511</a>","ama":"Wei Y, Klajn R, Pinchuk AO, Grzybowski BA. Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers.” <i>Small</i>. 2008;4(10):1635-1639. doi:<a href=\"https://doi.org/10.1002/smll.200800511\">10.1002/smll.200800511</a>","short":"Y. Wei, R. Klajn, A.O. Pinchuk, B.A. Grzybowski, Small 4 (2008) 1635–1639.","mla":"Wei, Yanhu, et al. “Synthesis, Shape Control, and Optical Properties of Hybrid Au/Fe3O4 ‘Nanoflowers.’” <i>Small</i>, vol. 4, no. 10, Wiley, 2008, pp. 1635–39, doi:<a href=\"https://doi.org/10.1002/smll.200800511\">10.1002/smll.200800511</a>.","ieee":"Y. Wei, R. Klajn, A. O. Pinchuk, and B. A. Grzybowski, “Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 ‘nanoflowers,’” <i>Small</i>, vol. 4, no. 10. Wiley, pp. 1635–1639, 2008.","ista":"Wei Y, Klajn R, Pinchuk AO, Grzybowski BA. 2008. Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers”. Small. 4(10), 1635–1639.","chicago":"Wei, Yanhu, Rafal Klajn, Anatoliy O. Pinchuk, and Bartosz A. Grzybowski. “Synthesis, Shape Control, and Optical Properties of Hybrid Au/Fe3O4 ‘Nanoflowers.’” <i>Small</i>. Wiley, 2008. <a href=\"https://doi.org/10.1002/smll.200800511\">https://doi.org/10.1002/smll.200800511</a>."},"keyword":["Biomaterials","Biotechnology","General Materials Science","General Chemistry"],"type":"journal_article","publication_identifier":{"eissn":["1613-6829"],"issn":["1613-6810"]},"scopus_import":"1","year":"2008","volume":4,"title":"Synthesis, shape control, and optical properties of hybrid Au/Fe3O4 “nanoflowers”","abstract":[{"lang":"eng","text":"Make like a leaf: The synthesis and characterization of a family of “flowerlike” Au/Fe3O4 nanoparticles is described, whereby Fe3O4 “leaves” adhere to a gold core (see image). The size and numbers of iron oxide domains can be adjusted flexibly by changing the proportion of the starting materials and the reaction time."}],"date_published":"2008-10-09T00:00:00Z","issue":"10","date_updated":"2023-08-08T11:14:50Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13422","extern":"1","pmid":1,"publisher":"Wiley","doi":"10.1002/smll.200800511","publication_status":"published","author":[{"full_name":"Wei, Yanhu","first_name":"Yanhu","last_name":"Wei"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","last_name":"Klajn","first_name":"Rafal"},{"full_name":"Pinchuk, Anatoliy O.","first_name":"Anatoliy O.","last_name":"Pinchuk"},{"last_name":"Grzybowski","first_name":"Bartosz A.","full_name":"Grzybowski, Bartosz A."}],"language":[{"iso":"eng"}],"article_type":"original","month":"10","publication":"Small","page":"1635-1639","day":"09","date_created":"2023-08-01T10:30:42Z","status":"public","article_processing_charge":"No","quality_controlled":"1","intvolume":"         4","external_id":{"pmid":["18636405"]}},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13423","extern":"1","publisher":"Wiley","doi":"10.1002/adfm.200800293","publication_status":"published","author":[{"full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","last_name":"Klajn"},{"full_name":"Gray, Timothy P.","first_name":"Timothy P.","last_name":"Gray"},{"full_name":"Wesson, Paul J.","first_name":"Paul J.","last_name":"Wesson"},{"full_name":"Myers, Benjamin D.","last_name":"Myers","first_name":"Benjamin D."},{"full_name":"Dravid, Vinayak P.","last_name":"Dravid","first_name":"Vinayak P."},{"last_name":"Smoukov","first_name":"Stoyan K.","full_name":"Smoukov, Stoyan K."},{"first_name":"Bartosz A.","last_name":"Grzybowski","full_name":"Grzybowski, Bartosz A."}],"keyword":["Electrochemistry","Condensed Matter Physics","Biomaterials","Electronic","Optical and Magnetic Materials"],"oa_version":"None","citation":{"ista":"Klajn R, Gray TP, Wesson PJ, Myers BD, Dravid VP, Smoukov SK, Grzybowski BA. 2008. Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates. Advanced Functional Materials. 18(18), 2763–2769.","chicago":"Klajn, Rafal, Timothy P. Gray, Paul J. Wesson, Benjamin D. Myers, Vinayak P. Dravid, Stoyan K. Smoukov, and Bartosz A. Grzybowski. “Bulk Synthesis and Surface Patterning of Nanoporous Metals and Alloys from Supraspherical Nanoparticle Aggregates.” <i>Advanced Functional Materials</i>. Wiley, 2008. <a href=\"https://doi.org/10.1002/adfm.200800293\">https://doi.org/10.1002/adfm.200800293</a>.","ama":"Klajn R, Gray TP, Wesson PJ, et al. Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates. <i>Advanced Functional Materials</i>. 2008;18(18):2763-2769. doi:<a href=\"https://doi.org/10.1002/adfm.200800293\">10.1002/adfm.200800293</a>","apa":"Klajn, R., Gray, T. P., Wesson, P. J., Myers, B. D., Dravid, V. P., Smoukov, S. K., &#38; Grzybowski, B. A. (2008). Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates. <i>Advanced Functional Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adfm.200800293\">https://doi.org/10.1002/adfm.200800293</a>","short":"R. Klajn, T.P. Gray, P.J. Wesson, B.D. Myers, V.P. Dravid, S.K. Smoukov, B.A. Grzybowski, Advanced Functional Materials 18 (2008) 2763–2769.","ieee":"R. Klajn <i>et al.</i>, “Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates,” <i>Advanced Functional Materials</i>, vol. 18, no. 18. Wiley, pp. 2763–2769, 2008.","mla":"Klajn, Rafal, et al. “Bulk Synthesis and Surface Patterning of Nanoporous Metals and Alloys from Supraspherical Nanoparticle Aggregates.” <i>Advanced Functional Materials</i>, vol. 18, no. 18, Wiley, 2008, pp. 2763–69, doi:<a href=\"https://doi.org/10.1002/adfm.200800293\">10.1002/adfm.200800293</a>."},"type":"journal_article","publication_identifier":{"eissn":["1616-3028"],"issn":["1616-301X"]},"scopus_import":"1","year":"2008","volume":18,"title":"Bulk synthesis and surface patterning of nanoporous metals and alloys from supraspherical nanoparticle aggregates","abstract":[{"text":"Supraspheres (SS) composed of hundreds to thousands of metal nanoparticles (NPs) and crosslinked by dithiol linkers are assembled into larger structures, which are subsequently converted into nanoporous metals (NMs). Conversion is achieved by heating which removes organic molecules stabilizing the NPs and allows for NP fusion. Heating of SS solutions leads to NMs of overall macroscopic dimensions; localized radiation using collimated electron beam is used to prepare metallized surface micropatterns. Depending on the composition of supraspherical precursors, nanoporous materials composed of up to three metals can be obtained. Strategies for controlling pore size and nanoscale surface roughness of these materials are discussed.","lang":"eng"}],"date_published":"2008-09-23T00:00:00Z","issue":"18","date_updated":"2023-08-08T11:16:28Z","quality_controlled":"1","article_processing_charge":"No","intvolume":"        18","language":[{"iso":"eng"}],"month":"09","article_type":"original","publication":"Advanced Functional Materials","page":"2763-2769","day":"23","date_created":"2023-08-01T10:30:57Z","status":"public"},{"acknowledgement":"The first author was supported by NSF grants DMS-0305505 and DMS- 0604775 an Alfred Sloan Fellowship and a Royal Society University Research Fellowship. The second author was supported by an NSF grant DMS-0200605.","quality_controlled":0,"_id":"1460","intvolume":"       174","extern":1,"author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Tamas Hausel","last_name":"Hausel","first_name":"Tamas"},{"full_name":"Rodríguez Villegas, Fernando","first_name":"Fernando","last_name":"Rodríguez Villegas"}],"publication_status":"published","oa":1,"publisher":"Springer","doi":"10.1007/s00222-008-0142-x","publist_id":"5732","type":"journal_article","month":"12","year":"2008","volume":174,"citation":{"ieee":"T. Hausel and F. Rodríguez Villegas, “Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz,” <i>Inventiones Mathematicae</i>, vol. 174, no. 3. Springer, pp. 555–624, 2008.","mla":"Hausel, Tamás, and Fernando Rodríguez Villegas. “Mixed Hodge Polynomials of Character Varieties: With an Appendix by Nicholas M. Katz.” <i>Inventiones Mathematicae</i>, vol. 174, no. 3, Springer, 2008, pp. 555–624, doi:<a href=\"https://doi.org/10.1007/s00222-008-0142-x\">10.1007/s00222-008-0142-x</a>.","short":"T. Hausel, F. Rodríguez Villegas, Inventiones Mathematicae 174 (2008) 555–624.","ama":"Hausel T, Rodríguez Villegas F. Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz. <i>Inventiones Mathematicae</i>. 2008;174(3):555-624. doi:<a href=\"https://doi.org/10.1007/s00222-008-0142-x\">10.1007/s00222-008-0142-x</a>","apa":"Hausel, T., &#38; Rodríguez Villegas, F. (2008). Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz. <i>Inventiones Mathematicae</i>. Springer. <a href=\"https://doi.org/10.1007/s00222-008-0142-x\">https://doi.org/10.1007/s00222-008-0142-x</a>","chicago":"Hausel, Tamás, and Fernando Rodríguez Villegas. “Mixed Hodge Polynomials of Character Varieties: With an Appendix by Nicholas M. Katz.” <i>Inventiones Mathematicae</i>. Springer, 2008. <a href=\"https://doi.org/10.1007/s00222-008-0142-x\">https://doi.org/10.1007/s00222-008-0142-x</a>.","ista":"Hausel T, Rodríguez Villegas F. 2008. Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz. Inventiones Mathematicae. 174(3), 555–624."},"main_file_link":[{"url":"http://arxiv.org/abs/math/0612668","open_access":"1"}],"date_published":"2008-12-01T00:00:00Z","issue":"3","date_created":"2018-12-11T11:52:09Z","status":"public","date_updated":"2021-01-12T06:50:54Z","publication":"Inventiones Mathematicae","title":"Mixed Hodge polynomials of character varieties: With an appendix by Nicholas M. Katz","page":"555 - 624","day":"01","abstract":[{"lang":"eng","text":"We calculate the E-polynomials of certain twisted GL(n,ℂ)-character varieties Mn of Riemann surfaces by counting points over finite fields using the character table of the finite group of Lie-type GL(n, q) and a theorem proved in the appendix by N. Katz. We deduce from this calculation several geometric results, for example, the value of the topological Euler characteristic of the associated PGL(n,ℂ)-character variety. The calculation also leads to several conjectures about the cohomology of Mn: an explicit conjecture for its mixed Hodge polynomial; a conjectured curious hard Lefschetz theorem and a conjecture relating the pure part to absolutely indecomposable representations of a certain quiver. We prove these conjectures for n=2."}]},{"day":"08","abstract":[{"lang":"eng","text":"We have detected a spin-dependent displacement perpendicular to the refractive index gradient for photons passing through an air-glass interface. The effect is the photonic version of the spin Hall effect in electronic systems, indicating the universality of the effect for particles of different nature. Treating the effect as a weak measurement of the spin projection of the photons, we used a preselection and postselection technique on the spin state to enhance the original displacement by nearly four orders of magnitude, attaining sensitivity to displacements of ∼1 angstrom. The spin Hall effect can be used for manipulating photonic angular momentum states, and the measurement technique holds promise for precision metrology."}],"title":"Observation of the spin hall effect of light via weak measurements","publication":"Science","page":"787 - 790","date_updated":"2021-01-12T08:03:38Z","status":"public","date_published":"2008-02-08T00:00:00Z","issue":"5864","date_created":"2018-12-11T11:47:19Z","citation":{"chicago":"Hosten, Onur, and Paul Kwiat. “Observation of the Spin Hall Effect of Light via Weak Measurements.” <i>Science</i>. American Association for the Advancement of Science, 2008. <a href=\"https://doi.org/10.1126/science.1152697\">https://doi.org/10.1126/science.1152697</a>.","ista":"Hosten O, Kwiat P. 2008. Observation of the spin hall effect of light via weak measurements. Science. 319(5864), 787–790.","short":"O. Hosten, P. Kwiat, Science 319 (2008) 787–790.","mla":"Hosten, Onur, and Paul Kwiat. “Observation of the Spin Hall Effect of Light via Weak Measurements.” <i>Science</i>, vol. 319, no. 5864, American Association for the Advancement of Science, 2008, pp. 787–90, doi:<a href=\"https://doi.org/10.1126/science.1152697\">10.1126/science.1152697</a>.","ieee":"O. Hosten and P. Kwiat, “Observation of the spin hall effect of light via weak measurements,” <i>Science</i>, vol. 319, no. 5864. American Association for the Advancement of Science, pp. 787–790, 2008.","apa":"Hosten, O., &#38; Kwiat, P. (2008). Observation of the spin hall effect of light via weak measurements. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1152697\">https://doi.org/10.1126/science.1152697</a>","ama":"Hosten O, Kwiat P. Observation of the spin hall effect of light via weak measurements. <i>Science</i>. 2008;319(5864):787-790. doi:<a href=\"https://doi.org/10.1126/science.1152697\">10.1126/science.1152697</a>"},"volume":319,"year":"2008","type":"journal_article","month":"02","doi":"10.1126/science.1152697","publist_id":"7226","publisher":"American Association for the Advancement of Science","author":[{"first_name":"Onur","last_name":"Hosten","full_name":"Onur Hosten","orcid":"0000-0002-2031-204X","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kwiat, Paul","first_name":"Paul","last_name":"Kwiat"}],"publication_status":"published","intvolume":"       319","extern":1,"_id":"581","quality_controlled":0},{"citation":{"ista":"Hosten O, Kwiat P. 2008. Spin hall effect of light via weak measurements: Sharp and smooth index variations. QELS: Quantum Electronics and Laser Science Conference, Optics InfoBase Conference Papers, .","chicago":"Hosten, Onur, and Paul Kwiat. “Spin Hall Effect of Light via Weak Measurements: Sharp and Smooth Index Variations.” Optica Publishing Group, 2008.","ama":"Hosten O, Kwiat P. Spin hall effect of light via weak measurements: Sharp and smooth index variations. In: Optica Publishing Group; 2008.","apa":"Hosten, O., &#38; Kwiat, P. (2008). Spin hall effect of light via weak measurements: Sharp and smooth index variations. Presented at the QELS: Quantum Electronics and Laser Science Conference, San Jose, CA, United States: Optica Publishing Group.","short":"O. Hosten, P. Kwiat, in:, Optica Publishing Group, 2008.","ieee":"O. Hosten and P. Kwiat, “Spin hall effect of light via weak measurements: Sharp and smooth index variations,” presented at the QELS: Quantum Electronics and Laser Science Conference, San Jose, CA, United States, 2008.","mla":"Hosten, Onur, and Paul Kwiat. <i>Spin Hall Effect of Light via Weak Measurements: Sharp and Smooth Index Variations</i>. Optica Publishing Group, 2008."},"oa_version":"None","language":[{"iso":"eng"}],"publication_identifier":{"issn":["21622701"],"isbn":["978-155752859-9"]},"month":"01","type":"conference","year":"2008","scopus_import":"1","conference":{"location":"San Jose, CA, United States","start_date":"2008-05-04","name":"QELS: Quantum Electronics and Laser Science Conference","end_date":"2008-05-09"},"title":"Spin hall effect of light via weak measurements: Sharp and smooth index variations","abstract":[{"lang":"eng","text":"Using “quantum weak-measurements” as a coherent enhancement technique for small signals, we have measured the recently proposed “spin Hall effect” of light at an air-glass interface, and are working on the smoothly varying refractive-index case."}],"day":"01","date_created":"2018-12-11T11:47:20Z","date_published":"2008-01-01T00:00:00Z","main_file_link":[{"url":"https://opg.optica.org/abstract.cfm?URI=QELS-2008-QFB7"}],"status":"public","date_updated":"2022-05-24T09:10:41Z","_id":"584","article_processing_charge":"No","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","publisher":"Optica Publishing Group","alternative_title":["Optics InfoBase Conference Papers"],"publist_id":"7227","author":[{"full_name":"Hosten, Onur","orcid":"0000-0002-2031-204X","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","first_name":"Onur","last_name":"Hosten"},{"first_name":"Paul","last_name":"Kwiat","full_name":"Kwiat, Paul"}],"publication_status":"published"},{"author":[{"last_name":"Bretscher","first_name":"A. J.","full_name":"Bretscher, A. J."},{"full_name":"Busch, K. E.","first_name":"K. E.","last_name":"Busch"},{"last_name":"de Bono","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8347-0443","full_name":"de Bono, Mario"}],"publication_status":"published","doi":"10.1073/pnas.0707607105","publisher":"Proceedings of the National Academy of Sciences","pmid":1,"extern":"1","_id":"6146","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T08:06:21Z","ddc":["570"],"issue":"23","date_published":"2008-06-10T00:00:00Z","abstract":[{"text":"Homeostasis of internal carbon dioxide (CO2) and oxygen (O2) levels is fundamental to all animals. Here we examine the CO2 response of the nematode Caenorhabditis elegans. This species inhabits rotting material, which typically has a broad CO2 concentration range. We show that well fed C. elegans avoid CO2 levels above 0.5%. Animals can respond to both absolute CO2 concentrations and changes in CO2 levels within seconds. Responses to CO2 do not reflect avoidance of acid pH but appear to define a new sensory response. Sensation of CO2 is promoted by the cGMP-gated ion channel subunits TAX-2 and TAX-4, but other pathways are also important. Robust CO2 avoidance in well fed animals requires inhibition of the DAF-16 forkhead transcription factor by the insulin-like receptor DAF-2. Starvation, which activates DAF-16, strongly suppresses CO2 avoidance. Exposure to hypoxia (<1% O2) also suppresses CO2 avoidance via activation of the hypoxia-inducible transcription factor HIF-1. The npr-1 215V allele of the naturally polymorphic neuropeptide receptor npr-1, besides inhibiting avoidance of high ambient O2 in feeding C. elegans, also promotes avoidance of high CO2. C. elegans integrates competing O2 and CO2 sensory inputs so that one response dominates. Food and allelic variation at NPR-1 regulate which response prevails. Our results suggest that multiple sensory inputs are coordinated by C. elegans to generate different coherent foraging strategies.","lang":"eng"}],"title":"A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans","volume":105,"year":"2008","publication_identifier":{"issn":["0027-8424","1091-6490"]},"type":"journal_article","oa_version":"Published Version","citation":{"ieee":"A. J. Bretscher, K. E. Busch, and M. de Bono, “A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans,” <i>Proceedings of the National Academy of Sciences</i>, vol. 105, no. 23. Proceedings of the National Academy of Sciences, pp. 8044–8049, 2008.","mla":"Bretscher, A. J., et al. “A Carbon Dioxide Avoidance Behavior Is Integrated with Responses to Ambient Oxygen and Food in Caenorhabditis Elegans.” <i>Proceedings of the National Academy of Sciences</i>, vol. 105, no. 23, Proceedings of the National Academy of Sciences, 2008, pp. 8044–49, doi:<a href=\"https://doi.org/10.1073/pnas.0707607105\">10.1073/pnas.0707607105</a>.","short":"A.J. Bretscher, K.E. Busch, M. de Bono, Proceedings of the National Academy of Sciences 105 (2008) 8044–8049.","ama":"Bretscher AJ, Busch KE, de Bono M. A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans. <i>Proceedings of the National Academy of Sciences</i>. 2008;105(23):8044-8049. doi:<a href=\"https://doi.org/10.1073/pnas.0707607105\">10.1073/pnas.0707607105</a>","apa":"Bretscher, A. J., Busch, K. E., &#38; de Bono, M. (2008). A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans. <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.0707607105\">https://doi.org/10.1073/pnas.0707607105</a>","chicago":"Bretscher, A. J., K. E. Busch, and Mario de Bono. “A Carbon Dioxide Avoidance Behavior Is Integrated with Responses to Ambient Oxygen and Food in Caenorhabditis Elegans.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2008. <a href=\"https://doi.org/10.1073/pnas.0707607105\">https://doi.org/10.1073/pnas.0707607105</a>.","ista":"Bretscher AJ, Busch KE, de Bono M. 2008. A carbon dioxide avoidance behavior is integrated with responses to ambient oxygen and food in Caenorhabditis elegans. Proceedings of the National Academy of Sciences. 105(23), 8044–8049."},"oa":1,"has_accepted_license":"1","external_id":{"pmid":["18524954"]},"file":[{"relation":"main_file","file_id":"6147","checksum":"eac0413064b022c1489f7b6719e7228c","date_updated":"2020-07-14T12:47:20Z","file_size":501506,"file_name":"2008_PNAS_Bretscher.pdf","date_created":"2019-03-21T08:14:54Z","access_level":"open_access","creator":"kschuh","content_type":"application/pdf"}],"intvolume":"       105","quality_controlled":"1","file_date_updated":"2020-07-14T12:47:20Z","status":"public","date_created":"2019-03-21T08:10:15Z","day":"10","page":"8044-8049","publication":"Proceedings of the National Academy of Sciences","month":"06","language":[{"iso":"eng"}]},{"day":"01","publication":"Trends in Genetics","title":"Beyond induced mutants: using worms to study natural variation in genetic pathways","page":"178-185","date_updated":"2021-01-12T08:06:21Z","status":"public","date_published":"2008-04-01T00:00:00Z","date_created":"2019-03-21T08:19:45Z","issue":"4","language":[{"iso":"eng"}],"citation":{"apa":"Kammenga, J. E., Phillips, P. C., de Bono, M., &#38; Doroszuk, A. (2008). Beyond induced mutants: using worms to study natural variation in genetic pathways. <i>Trends in Genetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tig.2008.01.001\">https://doi.org/10.1016/j.tig.2008.01.001</a>","ama":"Kammenga JE, Phillips PC, de Bono M, Doroszuk A. Beyond induced mutants: using worms to study natural variation in genetic pathways. <i>Trends in Genetics</i>. 2008;24(4):178-185. doi:<a href=\"https://doi.org/10.1016/j.tig.2008.01.001\">10.1016/j.tig.2008.01.001</a>","mla":"Kammenga, Jan E., et al. “Beyond Induced Mutants: Using Worms to Study Natural Variation in Genetic Pathways.” <i>Trends in Genetics</i>, vol. 24, no. 4, Elsevier, 2008, pp. 178–85, doi:<a href=\"https://doi.org/10.1016/j.tig.2008.01.001\">10.1016/j.tig.2008.01.001</a>.","ieee":"J. E. Kammenga, P. C. Phillips, M. de Bono, and A. Doroszuk, “Beyond induced mutants: using worms to study natural variation in genetic pathways,” <i>Trends in Genetics</i>, vol. 24, no. 4. Elsevier, pp. 178–185, 2008.","short":"J.E. Kammenga, P.C. Phillips, M. de Bono, A. Doroszuk, Trends in Genetics 24 (2008) 178–185.","ista":"Kammenga JE, Phillips PC, de Bono M, Doroszuk A. 2008. Beyond induced mutants: using worms to study natural variation in genetic pathways. Trends in Genetics. 24(4), 178–185.","chicago":"Kammenga, Jan E., Patrick C. Phillips, Mario de Bono, and Agnieszka Doroszuk. “Beyond Induced Mutants: Using Worms to Study Natural Variation in Genetic Pathways.” <i>Trends in Genetics</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.tig.2008.01.001\">https://doi.org/10.1016/j.tig.2008.01.001</a>."},"oa_version":"None","volume":24,"year":"2008","type":"journal_article","publication_identifier":{"issn":["0168-9525"]},"month":"04","doi":"10.1016/j.tig.2008.01.001","external_id":{"pmid":["18325626"]},"publisher":"Elsevier","author":[{"first_name":"Jan E.","last_name":"Kammenga","full_name":"Kammenga, Jan E."},{"full_name":"Phillips, Patrick C.","first_name":"Patrick C.","last_name":"Phillips"},{"first_name":"Mario","last_name":"de Bono","orcid":"0000-0001-8347-0443","full_name":"de Bono, Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Agnieszka","last_name":"Doroszuk","full_name":"Doroszuk, Agnieszka"}],"publication_status":"published","intvolume":"        24","extern":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","_id":"6148","pmid":1},{"oa_version":"None","citation":{"short":"B. Olofsson, M. de Bono, Current Biology 18 (2008) R204–R206.","mla":"Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.” <i>Current Biology</i>, vol. 18, no. 5, Elsevier, 2008, pp. R204–06, doi:<a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">10.1016/j.cub.2008.01.002</a>.","ieee":"B. Olofsson and M. de Bono, “Sleep: dozy worms and sleepy flies,” <i>Current Biology</i>, vol. 18, no. 5. Elsevier, pp. R204–R206, 2008.","ama":"Olofsson B, de Bono M. Sleep: dozy worms and sleepy flies. <i>Current Biology</i>. 2008;18(5):R204-R206. doi:<a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">10.1016/j.cub.2008.01.002</a>","apa":"Olofsson, B., &#38; de Bono, M. (2008). Sleep: dozy worms and sleepy flies. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">https://doi.org/10.1016/j.cub.2008.01.002</a>","chicago":"Olofsson, Birgitta, and Mario de Bono. “Sleep: Dozy Worms and Sleepy Flies.” <i>Current Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.cub.2008.01.002\">https://doi.org/10.1016/j.cub.2008.01.002</a>.","ista":"Olofsson B, de Bono M. 2008. Sleep: dozy worms and sleepy flies. Current Biology. 18(5), R204–R206."},"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0960-9822"]},"month":"03","type":"journal_article","year":"2008","volume":18,"page":"R204-R206","publication":"Current Biology","title":"Sleep: dozy worms and sleepy flies","day":"11","issue":"5","date_created":"2019-03-21T08:23:24Z","date_published":"2008-03-11T00:00:00Z","status":"public","date_updated":"2022-08-25T15:03:41Z","article_processing_charge":"No","_id":"6149","quality_controlled":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","extern":"1","intvolume":"        18","pmid":1,"publisher":"Elsevier","external_id":{"pmid":["18334193"]},"doi":"10.1016/j.cub.2008.01.002","author":[{"full_name":"Olofsson, Birgitta","last_name":"Olofsson","first_name":"Birgitta"},{"last_name":"de Bono","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8347-0443","full_name":"de Bono, Mario"}],"publication_status":"published"},{"external_id":{"arxiv":["0710.5083"]},"publist_id":"6353","oa":1,"article_processing_charge":"No","acknowledgement":"We thank A. Daley for theoretical support and for help with\r\nsetting  up the  numerical  calculations  and  A. Buchleitner\r\nand  his  group  for  useful  discussions.  We  are  grateful  to\r\nA. Liem and H. Zellmer for valuable assistance in setting\r\nup the 1064 nm fiber amplifier system. We acknowledge\r\ncontributions  by  P.  Unterwaditzer  and  T.  Flir  during  the\r\nearly   stages   of   the   experiment.   We   are   indebted   to\r\nR.  Grimm  for  generous  support  and  gratefully  acknowledge  funding  by  the  Austrian  Ministry  of  Science  and\r\nResearch (BMWF) and the Austrian Science Fund (FWF).","intvolume":"       100","publication":"Physical Review Letters","day":"28","date_created":"2018-12-11T11:49:48Z","status":"public","language":[{"iso":"eng"}],"month":"02","publisher":"American Physical Society","arxiv":1,"doi":"10.1103/PhysRevLett.100.080404","publication_status":"published","author":[{"last_name":"Gustavsson","first_name":"Mattias","full_name":"Gustavsson, Mattias"},{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"last_name":"Mark","first_name":"Manfred","full_name":"Mark, Manfred"},{"first_name":"Johann G","last_name":"Danzl","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Rojas Kopeinig","first_name":"Gabriel","full_name":"Rojas Kopeinig, Gabriel"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"}],"_id":"1036","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","title":"Control of interaction-induced dephasing of bloch oscillations","abstract":[{"text":"We report on the control of interaction-induced dephasing of Bloch oscillations for an atomic Bose-Einstein condensate in an optical lattice. We quantify the dephasing in terms of the width of the quasimomentum distribution and measure its dependence on time for different interaction strengths which we control by means of a Feshbach resonance. For minimal interaction, the dephasing time is increased from a few to more than 20 thousand Bloch oscillation periods, allowing us to realize a BEC-based atom interferometer in the noninteracting limit.","lang":"eng"}],"issue":"8","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0710.5083"}],"date_published":"2008-02-28T00:00:00Z","date_updated":"2021-01-12T06:47:49Z","citation":{"ista":"Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. 2008. Control of interaction-induced dephasing of bloch oscillations. Physical Review Letters. 100(8).","chicago":"Gustavsson, Mattias, Elmar Haller, Manfred Mark, Johann G Danzl, Gabriel Rojas Kopeinig, and Hanns Nägerl. “Control of Interaction-Induced Dephasing of Bloch Oscillations.” <i>Physical Review Letters</i>. American Physical Society, 2008. <a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">https://doi.org/10.1103/PhysRevLett.100.080404</a>.","apa":"Gustavsson, M., Haller, E., Mark, M., Danzl, J. G., Rojas Kopeinig, G., &#38; Nägerl, H. (2008). Control of interaction-induced dephasing of bloch oscillations. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">https://doi.org/10.1103/PhysRevLett.100.080404</a>","ama":"Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. Control of interaction-induced dephasing of bloch oscillations. <i>Physical Review Letters</i>. 2008;100(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">10.1103/PhysRevLett.100.080404</a>","short":"M. Gustavsson, E. Haller, M. Mark, J.G. Danzl, G. Rojas Kopeinig, H. Nägerl, Physical Review Letters 100 (2008).","mla":"Gustavsson, Mattias, et al. “Control of Interaction-Induced Dephasing of Bloch Oscillations.” <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical Society, 2008, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">10.1103/PhysRevLett.100.080404</a>.","ieee":"M. Gustavsson, E. Haller, M. Mark, J. G. Danzl, G. Rojas Kopeinig, and H. Nägerl, “Control of interaction-induced dephasing of bloch oscillations,” <i>Physical Review Letters</i>, vol. 100, no. 8. American Physical Society, 2008."},"oa_version":"None","type":"journal_article","year":"2008","volume":100},{"article_processing_charge":"No","acknowledgement":"We thank S. Du ̈rr and T. Volz for fruitful discussions. We acknowledge support by the Austrian Science Fund (FWF) within No. SFB 15 (project part 16). S.K. is supported within the Marie Curie Intra-European Program of the European Commission. F.F. is supported within the Lise Meitner program of the FWF.","intvolume":"       100","external_id":{"arxiv":["0710.4052"]},"publist_id":"6352","oa":1,"language":[{"iso":"eng"}],"month":"02","publication":"Physical Review Letters","day":"29","date_created":"2018-12-11T11:49:49Z","status":"public","_id":"1037","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","publisher":"American Physical Society","arxiv":1,"doi":"10.1103/PhysRevLett.100.083002","publication_status":"published","author":[{"full_name":"Knoop, Steven","last_name":"Knoop","first_name":"Steven"},{"full_name":"Mark, Michael","last_name":"Mark","first_name":"Michael"},{"full_name":"Ferlaino, Francesca","last_name":"Ferlaino","first_name":"Francesca"},{"last_name":"Danzl","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973"},{"first_name":"Tobias","last_name":"Kraemer","full_name":"Kraemer, Tobias"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"},{"last_name":"Grimm","first_name":"Rudolf","full_name":"Grimm, Rudolf"}],"citation":{"chicago":"Knoop, Steven, Michael Mark, Francesca Ferlaino, Johann G Danzl, Tobias Kraemer, Hanns Nägerl, and Rudolf Grimm. “Metastable Feshbach Molecules in High Rotational States.” <i>Physical Review Letters</i>. American Physical Society, 2008. <a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">https://doi.org/10.1103/PhysRevLett.100.083002</a>.","ista":"Knoop S, Mark M, Ferlaino F, Danzl JG, Kraemer T, Nägerl H, Grimm R. 2008. Metastable feshbach molecules in high rotational states. Physical Review Letters. 100(8).","short":"S. Knoop, M. Mark, F. Ferlaino, J.G. Danzl, T. Kraemer, H. Nägerl, R. Grimm, Physical Review Letters 100 (2008).","ieee":"S. Knoop <i>et al.</i>, “Metastable feshbach molecules in high rotational states,” <i>Physical Review Letters</i>, vol. 100, no. 8. American Physical Society, 2008.","mla":"Knoop, Steven, et al. “Metastable Feshbach Molecules in High Rotational States.” <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical Society, 2008, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">10.1103/PhysRevLett.100.083002</a>.","ama":"Knoop S, Mark M, Ferlaino F, et al. Metastable feshbach molecules in high rotational states. <i>Physical Review Letters</i>. 2008;100(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">10.1103/PhysRevLett.100.083002</a>","apa":"Knoop, S., Mark, M., Ferlaino, F., Danzl, J. G., Kraemer, T., Nägerl, H., &#38; Grimm, R. (2008). Metastable feshbach molecules in high rotational states. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">https://doi.org/10.1103/PhysRevLett.100.083002</a>"},"oa_version":"None","type":"journal_article","year":"2008","volume":100,"title":"Metastable feshbach molecules in high rotational states","abstract":[{"lang":"eng","text":"We experimentally demonstrate Cs2 Feshbach molecules well above the dissociation threshold, which are stable against spontaneous decay on the time scale of 1s. An optically trapped sample of ultracold dimers is prepared in a high rotational state and magnetically tuned into a region with a negative binding energy. The metastable character of these molecules arises from the large centrifugal barrier in combination with negligible coupling to states with low rotational angular momentum. A sharp onset of dissociation with increasing magnetic field is mediated by a crossing with a lower rotational dimer state and facilitates dissociation on demand with a well-defined energy."}],"issue":"8","main_file_link":[{"url":"https://arxiv.org/abs/0710.4052","open_access":"1"}],"date_published":"2008-02-29T00:00:00Z","date_updated":"2021-01-12T06:47:50Z"},{"oa":1,"external_id":{"arxiv":["0806.2284"]},"publist_id":"6351","acknowledgement":" We thank the team of J. Hecker Denschlag, the LevT team in our group, and T. Bergeman for very helpful discussions and M. Prevedelli for technical assistance. We are indebted to R. Grimm for generous support and gratefully acknowledge funding by the Austrian Ministry of Science and Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START prize grant and by the European Science Foundation in the framework of the EuroQUAM collective research project QuDipMol.\r\n","article_processing_charge":"No","intvolume":"       321","date_created":"2018-12-11T11:49:49Z","status":"public","publication":"Science","page":"1062 - 1066","day":"22","month":"08","language":[{"iso":"eng"}],"publication_status":"published","author":[{"first_name":"Johann G","last_name":"Danzl","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Haller","first_name":"Elmar","full_name":"Haller, Elmar"},{"full_name":"Gustavsson, Mattias","first_name":"Mattias","last_name":"Gustavsson"},{"last_name":"Mark","first_name":"Manfred","full_name":"Mark, Manfred"},{"first_name":"Russell","last_name":"Hart","full_name":"Hart, Russell"},{"full_name":"Bouloufa, Nadia","first_name":"Nadia","last_name":"Bouloufa"},{"full_name":"Dulieu, Olivier","first_name":"Olivier","last_name":"Dulieu"},{"full_name":"Ritsch, Helmut","last_name":"Ritsch","first_name":"Helmut"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"}],"arxiv":1,"publisher":"American Association for the Advancement of Science","doi":"10.1126/science.1159909","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1039","extern":"1","date_published":"2008-08-22T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0806.2284"}],"issue":"5892","date_updated":"2021-01-12T06:47:50Z","title":"Quantum gas of deeply bound ground state molecules","abstract":[{"lang":"eng","text":"Molecular cooling techniques face the hurdle of dissipating translational as well as internal energy in the presence of a rich electronic, vibrational, and rotational energy spectrum. In our experiment, we create a translationally ultracold, dense quantum gas of molecules bound by more than 1000 wave numbers in the electronic ground state. Specifically, we stimulate with 80% efficiency, a two-photon transfer of molecules associated on a Feshbach resonance from a Bose-Einstein condensate of cesium atoms. In the process, the initial loose, long-range electrostatic bond of the Feshbach molecule is coherently transformed into a tight chemical bond. We demonstrate coherence of the transfer in a Ramsey-type experiment and show that the molecular sample is not heated during the transfer. Our results show that the preparation of a quantum gas of molecules in specific rovibrational states is possible and that the creation of a Bose-Einstein condensate of molecules in their rovibronic ground state is within reach."}],"type":"journal_article","year":"2008","volume":321,"citation":{"short":"J.G. Danzl, E. Haller, M. Gustavsson, M. Mark, R. Hart, N. Bouloufa, O. Dulieu, H. Ritsch, H. Nägerl, Science 321 (2008) 1062–1066.","ieee":"J. G. Danzl <i>et al.</i>, “Quantum gas of deeply bound ground state molecules,” <i>Science</i>, vol. 321, no. 5892. American Association for the Advancement of Science, pp. 1062–1066, 2008.","mla":"Danzl, Johann G., et al. “Quantum Gas of Deeply Bound Ground State Molecules.” <i>Science</i>, vol. 321, no. 5892, American Association for the Advancement of Science, 2008, pp. 1062–66, doi:<a href=\"https://doi.org/10.1126/science.1159909\">10.1126/science.1159909</a>.","ama":"Danzl JG, Haller E, Gustavsson M, et al. Quantum gas of deeply bound ground state molecules. <i>Science</i>. 2008;321(5892):1062-1066. doi:<a href=\"https://doi.org/10.1126/science.1159909\">10.1126/science.1159909</a>","apa":"Danzl, J. G., Haller, E., Gustavsson, M., Mark, M., Hart, R., Bouloufa, N., … Nägerl, H. (2008). Quantum gas of deeply bound ground state molecules. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1159909\">https://doi.org/10.1126/science.1159909</a>","chicago":"Danzl, Johann G, Elmar Haller, Mattias Gustavsson, Manfred Mark, Russell Hart, Nadia Bouloufa, Olivier Dulieu, Helmut Ritsch, and Hanns Nägerl. “Quantum Gas of Deeply Bound Ground State Molecules.” <i>Science</i>. American Association for the Advancement of Science, 2008. <a href=\"https://doi.org/10.1126/science.1159909\">https://doi.org/10.1126/science.1159909</a>.","ista":"Danzl JG, Haller E, Gustavsson M, Mark M, Hart R, Bouloufa N, Dulieu O, Ritsch H, Nägerl H. 2008. Quantum gas of deeply bound ground state molecules. Science. 321(5892), 1062–1066."},"oa_version":"None"},{"_id":"10392","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","extern":"1","publisher":"American Chemical Society","doi":"10.1021/om700916f","author":[{"first_name":"Anđela","last_name":"Šarić","orcid":"0000-0002-7854-2139","full_name":"Šarić, Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b"},{"first_name":"Valerije","last_name":"Vrček","full_name":"Vrček, Valerije"},{"full_name":"Bühl, Michael","first_name":"Michael","last_name":"Bühl"}],"publication_status":"published","keyword":["Inorganic Chemistry","Organic Chemistry","Physical and Theoretical Chemistry"],"citation":{"chicago":"Šarić, Anđela, Valerije Vrček, and Michael Bühl. “Density Functional Study of Protonated Formylmetallocenes.” <i>Organometallics</i>. American Chemical Society, 2008. <a href=\"https://doi.org/10.1021/om700916f\">https://doi.org/10.1021/om700916f</a>.","ista":"Šarić A, Vrček V, Bühl M. 2008. Density functional study of protonated formylmetallocenes. Organometallics. 27(3), 394–401.","short":"A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.","ieee":"A. Šarić, V. Vrček, and M. Bühl, “Density functional study of protonated formylmetallocenes,” <i>Organometallics</i>, vol. 27, no. 3. American Chemical Society, pp. 394–401, 2008.","mla":"Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.” <i>Organometallics</i>, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401, doi:<a href=\"https://doi.org/10.1021/om700916f\">10.1021/om700916f</a>.","ama":"Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes. <i>Organometallics</i>. 2008;27(3):394-401. doi:<a href=\"https://doi.org/10.1021/om700916f\">10.1021/om700916f</a>","apa":"Šarić, A., Vrček, V., &#38; Bühl, M. (2008). Density functional study of protonated formylmetallocenes. <i>Organometallics</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/om700916f\">https://doi.org/10.1021/om700916f</a>"},"oa_version":"None","publication_identifier":{"eissn":["1520-6041"],"issn":["0276-7333"]},"type":"journal_article","volume":27,"year":"2008","scopus_import":"1","title":"Density functional study of protonated formylmetallocenes","abstract":[{"lang":"eng","text":"Protonated formylmetallocenes [M(C5H5)(C5H4-CHOH)]+ (M = Fe, Ru) and their isomers have been studied at the BP86 and B3LYP levels of density functional theory. Oxygen-protonated isomers are the most stable forms in each case, with a plethora of ring- or metal-protonated species at least ca. 14 and 10 kcal/mol higher in energy for M = Fe and Ru, respectively. The computed rotational barriers around the C−C bond connecting the cyclopentadienyl and protonated formyl moieties, ca. 18 kcal/mol, are indicative of substantial conjugation between these moieties. Some of the ring- and iron-protonated species are models for possible intermediates in Friedel–Crafts acylation of ferrocene, and the computations provide further evidence that exo attack is clearly favored over endo attack of the electrophile in this reaction. The structures of the most stable mono- and diprotonated formylferrocenes are corroborated by the good agreement between GIAO-B3LYP-computed and experimental NMR chemical shifts."}],"issue":"3","date_published":"2008-01-15T00:00:00Z","main_file_link":[{"url":"https://pubs.acs.org/doi/10.1021/om700916f"}],"date_updated":"2021-11-30T08:04:44Z","quality_controlled":"1","article_processing_charge":"No","acknowledgement":"M.B. wishes to thank Prof. W. Thiel and the Max-Planck-Institut für Kohlenforschung for continuing support. A Humboldt fellowship for V.V. is gratefully acknowledged. Computations were performed on Compaq XP1000 and ES40 workstations as well as on an Intel Xeon PC cluster at the MPI Mülheim. A.S. thanks the Computing Center of the University of Zagreb SRCE for allocating computer time on the Isabella cluster.","intvolume":"        27","language":[{"iso":"eng"}],"article_type":"original","month":"01","page":"394-401","publication":"Organometallics","day":"15","date_created":"2021-11-29T15:31:06Z","status":"public"},{"citation":{"short":"D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.","ieee":"D. Zilberman, D. Coleman-Derr, T. Ballinger, and S. Henikoff, “Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks,” <i>Nature</i>, vol. 456, no. 7218. Springer Nature, pp. 125–129, 2008.","mla":"Zilberman, Daniel, et al. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.” <i>Nature</i>, vol. 456, no. 7218, Springer Nature, 2008, pp. 125–29, doi:<a href=\"https://doi.org/10.1038/nature07324\">10.1038/nature07324</a>.","ama":"Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. <i>Nature</i>. 2008;456(7218):125-129. doi:<a href=\"https://doi.org/10.1038/nature07324\">10.1038/nature07324</a>","apa":"Zilberman, D., Coleman-Derr, D., Ballinger, T., &#38; Henikoff, S. (2008). Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nature07324\">https://doi.org/10.1038/nature07324</a>","chicago":"Zilberman, Daniel, Devin Coleman-Derr, Tracy Ballinger, and Steven Henikoff. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.” <i>Nature</i>. Springer Nature, 2008. <a href=\"https://doi.org/10.1038/nature07324\">https://doi.org/10.1038/nature07324</a>.","ista":"Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. 2008. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 456(7218), 125–129."},"oa_version":"Submitted Version","keyword":["Multidisciplinary"],"publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"type":"journal_article","volume":456,"year":"2008","scopus_import":"1","title":"Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks","abstract":[{"text":"Eukaryotic chromatin is separated into functional domains differentiated by posttranslational histone modifications, histone variants, and DNA methylation1–6. Methylation is associated with repression of transcriptional initiation in plants and animals, and is frequently found in transposable elements. Proper methylation patterns are critical for eukaryotic development4,5, and aberrant methylation-induced silencing of tumor suppressor genes is a common feature of human cancer7. In contrast to methylation, the histone variant H2A.Z is preferentially deposited by the Swr1 ATPase complex near 5′ ends of genes where it promotes transcriptional competence8–20. How DNA methylation and H2A.Z influence transcription remains largely unknown. Here we show that in the plant Arabidopsis thaliana, regions of DNA methylation are quantitatively deficient in H2A.Z. Exclusion of H2A.Z is seen at sites of DNA methylation in the bodies of actively transcribed genes and in methylated transposons. Mutation of the MET1 DNA methyltransferase, which causes both losses and gains of DNA methylation4,5, engenders opposite changes in H2A.Z deposition, while mutation of the PIE1 subunit of the Swr1 complex that deposits H2A.Z17 leads to genome-wide hypermethylation. Our findings indicate that DNA methylation can influence chromatin structure and effect gene silencing by excluding H2A.Z, and that H2A.Z protects genes from DNA methylation.","lang":"eng"}],"issue":"7218","date_published":"2008-11-06T00:00:00Z","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877514/","open_access":"1"}],"date_updated":"2021-12-14T08:54:36Z","_id":"9457","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","extern":"1","pmid":1,"publisher":"Springer Nature","doi":"10.1038/nature07324","publication_status":"published","author":[{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","last_name":"Zilberman","first_name":"Daniel"},{"last_name":"Coleman-Derr","first_name":"Devin","full_name":"Coleman-Derr, Devin"},{"first_name":"Tracy","last_name":"Ballinger","full_name":"Ballinger, Tracy"},{"last_name":"Henikoff","first_name":"Steven","full_name":"Henikoff, Steven"}],"department":[{"_id":"DaZi"}],"language":[{"iso":"eng"}],"article_type":"letter_note","month":"11","page":"125-129","publication":"Nature","day":"06","date_created":"2021-06-04T11:49:32Z","status":"public","quality_controlled":"1","article_processing_charge":"No","intvolume":"       456","external_id":{"pmid":["18815594"]},"oa":1},{"pmid":1,"extern":"1","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"9537","department":[{"_id":"DaZi"}],"publication_status":"published","author":[{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","last_name":"Zilberman","first_name":"Daniel"}],"doi":"10.1016/j.pbi.2008.07.004","publisher":"Elsevier ","scopus_import":"1","volume":11,"year":"2008","type":"journal_article","publication_identifier":{"issn":["1369-5266"]},"citation":{"chicago":"Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” <i>Current Opinion in Plant Biology</i>. Elsevier , 2008. <a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">https://doi.org/10.1016/j.pbi.2008.07.004</a>.","ista":"Zilberman D. 2008. The evolving functions of DNA methylation. Current Opinion in Plant Biology. 11(5), 554–559.","short":"D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.","ieee":"D. Zilberman, “The evolving functions of DNA methylation,” <i>Current Opinion in Plant Biology</i>, vol. 11, no. 5. Elsevier , pp. 554–559, 2008.","mla":"Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” <i>Current Opinion in Plant Biology</i>, vol. 11, no. 5, Elsevier , 2008, pp. 554–59, doi:<a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">10.1016/j.pbi.2008.07.004</a>.","apa":"Zilberman, D. (2008). The evolving functions of DNA methylation. <i>Current Opinion in Plant Biology</i>. Elsevier . <a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">https://doi.org/10.1016/j.pbi.2008.07.004</a>","ama":"Zilberman D. The evolving functions of DNA methylation. <i>Current Opinion in Plant Biology</i>. 2008;11(5):554-559. doi:<a href=\"https://doi.org/10.1016/j.pbi.2008.07.004\">10.1016/j.pbi.2008.07.004</a>"},"oa_version":"None","date_updated":"2021-12-14T08:54:07Z","date_published":"2008-10-01T00:00:00Z","issue":"5","abstract":[{"lang":"eng","text":"DNA methylation is an ancient process found in all domains of life. Although the enzymes that mediate methylation have remained highly conserved, DNA methylation has been adapted for a variety of uses throughout evolution, including defense against transposable elements and control of gene expression. Defects in DNA methylation are linked to human diseases, including cancer. Methylation has been lost several times in the course of animal and fungal evolution, thus limiting the opportunity for study in common model organisms. In the past decade, plants have emerged as a premier model system for genetic dissection of DNA methylation. A recent combination of plant genetics with powerful genomic approaches has led to a number of exciting discoveries and promises many more."}],"title":"The evolving functions of DNA methylation","intvolume":"        11","quality_controlled":"1","article_processing_charge":"No","external_id":{"pmid":["18774331"]},"month":"10","article_type":"review","language":[{"iso":"eng"}],"status":"public","date_created":"2021-06-08T13:13:37Z","publication":"Current Opinion in Plant Biology","page":"554-559"},{"_id":"965","quality_controlled":0,"acknowledgement":"This work is supported in part by the Dynasty Foundation (M. N. S.),  the\nRussian Foundation for Basic Research (Grant No\ns. 07-02-00878 and 07-02-00645), a joint grant (Grant\nNo. 06-01-92059-CE), the NWO (Project No. 047.011.2004.026), INTAS (Grant No. 05-1000008-7865), the\nProgram for Supporting Leading Scientific School\ns (Grant No. NSh-8004.2006.2), and also by a project\n(Project No. ANR-05-BLAN-0029-01, A. Yu. M.).","extern":1,"intvolume":"       154","author":[{"full_name":"Morozov, Alexei Y","last_name":"Morozov","first_name":"Alexei"},{"orcid":"0000-0002-2399-5827","full_name":"Maksym Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym","last_name":"Serbyn"}],"publication_status":"published","oa":1,"publisher":"Elsevier","publist_id":"6437","doi":"10.1007/s11232-008-0026-7","month":"01","type":"journal_article","year":"2008","volume":154,"citation":{"ista":"Morozov A, Serbyn M. 2008. Nonlinear algebra and Bogoliubov’s recursion. Theoretical and Mathematical Physics. 154(2), 270–293.","chicago":"Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s Recursion.” <i>Theoretical and Mathematical Physics</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1007/s11232-008-0026-7\">https://doi.org/10.1007/s11232-008-0026-7</a>.","apa":"Morozov, A., &#38; Serbyn, M. (2008). Nonlinear algebra and Bogoliubov’s recursion. <i>Theoretical and Mathematical Physics</i>. Elsevier. <a href=\"https://doi.org/10.1007/s11232-008-0026-7\">https://doi.org/10.1007/s11232-008-0026-7</a>","ama":"Morozov A, Serbyn M. Nonlinear algebra and Bogoliubov’s recursion. <i>Theoretical and Mathematical Physics</i>. 2008;154(2):270-293. doi:<a href=\"https://doi.org/10.1007/s11232-008-0026-7\">10.1007/s11232-008-0026-7</a>","mla":"Morozov, Alexei, and Maksym Serbyn. “Nonlinear Algebra and Bogoliubov’s Recursion.” <i>Theoretical and Mathematical Physics</i>, vol. 154, no. 2, Elsevier, 2008, pp. 270–93, doi:<a href=\"https://doi.org/10.1007/s11232-008-0026-7\">10.1007/s11232-008-0026-7</a>.","ieee":"A. Morozov and M. Serbyn, “Nonlinear algebra and Bogoliubov’s recursion,” <i>Theoretical and Mathematical Physics</i>, vol. 154, no. 2. Elsevier, pp. 270–293, 2008.","short":"A. Morozov, M. Serbyn, Theoretical and Mathematical Physics 154 (2008) 270–293."},"date_created":"2018-12-11T11:49:26Z","issue":"2","main_file_link":[{"url":"https://arxiv.org/abs/hep-th/0703258","open_access":"1"}],"date_published":"2008-01-01T00:00:00Z","date_updated":"2021-01-12T08:22:17Z","status":"public","page":"270 - 293","title":"Nonlinear algebra and Bogoliubov's recursion","publication":"Theoretical and Mathematical Physics","abstract":[{"lang":"eng","text":"We give many examples of applying Bogoliubov's forest formula to iterative solutions of various nonlinear equations. The same formula describes an extremely wide class of objects, from an ordinary quadratic equation to renormalization in quantum field theory."}],"day":"01"},{"title":"Reorganization of the nuclear envelope during open mitosis","abstract":[{"lang":"eng","text":"The nuclear envelope (NE) provides a selective barrier between the nuclear interior and the cytoplasm and constitutes a central component of intracellular architecture. During mitosis in metazoa, the NE breaks down leading to the complete mixing of the nuclear content with the cytosol. Interestingly, many NE components actively participate in mitotic progression. After chromosome segregation, the NE is reassembled around decondensing chromatin and the nuclear compartment is reestablished in the daughter cells. Here, we summarize recent progress in deciphering the molecular mechanisms underlying NE dynamics during cell division."}],"issue":"6","date_published":"2008-12-01T00:00:00Z","date_updated":"2022-07-18T08:55:32Z","oa_version":"None","keyword":["Cell Biology"],"citation":{"short":"U. Kutay, M. Hetzer, Current Opinion in Cell Biology 20 (2008) 669–677.","mla":"Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope during Open Mitosis.” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 6, Elsevier, 2008, pp. 669–77, doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">10.1016/j.ceb.2008.09.010</a>.","ieee":"U. Kutay and M. Hetzer, “Reorganization of the nuclear envelope during open mitosis,” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 6. Elsevier, pp. 669–677, 2008.","apa":"Kutay, U., &#38; Hetzer, M. (2008). Reorganization of the nuclear envelope during open mitosis. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">https://doi.org/10.1016/j.ceb.2008.09.010</a>","ama":"Kutay U, Hetzer M. Reorganization of the nuclear envelope during open mitosis. <i>Current Opinion in Cell Biology</i>. 2008;20(6):669-677. doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">10.1016/j.ceb.2008.09.010</a>","chicago":"Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope during Open Mitosis.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">https://doi.org/10.1016/j.ceb.2008.09.010</a>.","ista":"Kutay U, Hetzer M. 2008. Reorganization of the nuclear envelope during open mitosis. Current Opinion in Cell Biology. 20(6), 669–677."},"publication_identifier":{"issn":["0955-0674"]},"type":"journal_article","volume":20,"year":"2008","scopus_import":"1","publisher":"Elsevier","doi":"10.1016/j.ceb.2008.09.010","publication_status":"published","author":[{"last_name":"Kutay","first_name":"Ulrike","full_name":"Kutay, Ulrike"},{"last_name":"HETZER","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X"}],"_id":"11109","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","extern":"1","pmid":1,"page":"669-677","publication":"Current Opinion in Cell Biology","day":"01","date_created":"2022-04-07T07:55:00Z","status":"public","language":[{"iso":"eng"}],"month":"12","article_type":"original","external_id":{"pmid":["18938243"]},"quality_controlled":"1","article_processing_charge":"No","intvolume":"        20"}]