[{"abstract":[{"text":"The signalling molecule auxin controls plant morphogenesis via its activity gradients, which are produced by intercellular auxin transport. Cellular auxin efflux is the rate-limiting step in this process and depends on PIN and phosphoglycoprotein (PGP) auxin transporters. Mutual roles for these proteins in auxin transport are unclear, as is the significance of their interactions for plant development. Here, we have analysed the importance of the functional interaction between PIN- and PGP-dependent auxin transport in development. We show by analysis of inducible overexpression lines that PINs and PGPs define distinct auxin transport mechanisms: both mediate auxin efflux but they play diverse developmental roles. Components of both systems are expressed during embryogenesis, organogenesis and tropisms, and they interact genetically in both synergistic and antagonistic fashions. A concerted action of PIN- and PGP-dependent efflux systems is required for asymmetric auxin distribution during these processes. We propose a model in which PGP-mediated efflux controls auxin levels in auxin channel-forming cells and, thus, auxin availability for PIN-dependent vectorial auxin movement.","lang":"eng"}],"quality_controlled":0,"author":[{"last_name":"Mravec","first_name":"Jozef","full_name":"Mravec, Jozef"},{"last_name":"Kubeš","full_name":"Kubeš, Martin","first_name":"Martin"},{"full_name":"Bielach, Agnieszka","first_name":"Agnieszka","last_name":"Bielach"},{"first_name":"Vassilena","full_name":"Gaykova, Vassilena","last_name":"Gaykova"},{"last_name":"Petrášek","full_name":"Petrášek, Jan","first_name":"Jan"},{"full_name":"Skůpa, Petr","first_name":"Petr","last_name":"Skůpa"},{"first_name":"Suresh","full_name":"Chand, Suresh","last_name":"Chand"},{"first_name":"Eva","orcid":"0000-0002-8510-9739","full_name":"Eva Benková","last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Zažímalová","full_name":"Zažímalová, Eva","first_name":"Eva"},{"full_name":"Jirí Friml","orcid":"0000-0002-8302-7596","first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"}],"page":"3345 - 3354","issue":"20","status":"public","_id":"3044","intvolume":"       135","publication_status":"published","month":"10","publication":"Development","publisher":"Company of Biologists","day":"15","year":"2008","title":"Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development","citation":{"chicago":"Mravec, Jozef, Martin Kubeš, Agnieszka Bielach, Vassilena Gaykova, Jan Petrášek, Petr Skůpa, Suresh Chand, Eva Benková, Eva Zažímalová, and Jiří Friml. “Interaction of PIN and PGP Transport Mechanisms in Auxin Distribution-Dependent Development.” <i>Development</i>. Company of Biologists, 2008. <a href=\"https://doi.org/10.1242/dev.021071\">https://doi.org/10.1242/dev.021071</a>.","apa":"Mravec, J., Kubeš, M., Bielach, A., Gaykova, V., Petrášek, J., Skůpa, P., … Friml, J. (2008). Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.021071\">https://doi.org/10.1242/dev.021071</a>","short":"J. Mravec, M. Kubeš, A. Bielach, V. Gaykova, J. Petrášek, P. Skůpa, S. Chand, E. Benková, E. Zažímalová, J. Friml, Development 135 (2008) 3345–3354.","mla":"Mravec, Jozef, et al. “Interaction of PIN and PGP Transport Mechanisms in Auxin Distribution-Dependent Development.” <i>Development</i>, vol. 135, no. 20, Company of Biologists, 2008, pp. 3345–54, doi:<a href=\"https://doi.org/10.1242/dev.021071\">10.1242/dev.021071</a>.","ista":"Mravec J, Kubeš M, Bielach A, Gaykova V, Petrášek J, Skůpa P, Chand S, Benková E, Zažímalová E, Friml J. 2008. Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development. Development. 135(20), 3345–3354.","ieee":"J. Mravec <i>et al.</i>, “Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development,” <i>Development</i>, vol. 135, no. 20. Company of Biologists, pp. 3345–3354, 2008.","ama":"Mravec J, Kubeš M, Bielach A, et al. Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development. <i>Development</i>. 2008;135(20):3345-3354. doi:<a href=\"https://doi.org/10.1242/dev.021071\">10.1242/dev.021071</a>"},"date_updated":"2021-01-12T07:40:39Z","date_published":"2008-10-15T00:00:00Z","extern":1,"doi":"10.1242/dev.021071","type":"journal_article","date_created":"2018-12-11T12:01:02Z","publist_id":"3658","volume":135},{"abstract":[{"lang":"eng","text":"Dynamically polarized membrane proteins define different cell boundaries and have an important role in intercellular communication - a vital feature of multicellular development. Efflux carriers for the signalling molecule auxin from the PIN family are landmarks of cell polarity in plants and have a crucial involvement in auxin distribution-dependent development including embryo patterning, organogenesis and tropisms. Polar PIN localization determines the direction of intercellular auxin flow, yet the mechanisms generating PIN polarity remain unclear. Here we identify an endocytosis-dependent mechanism of PIN polarity generation and analyse its developmental implications. Real-time PIN tracking showed that after synthesis, PINs are initially delivered to the plasma membrane in a non-polar manner and their polarity is established by subsequent endocytic recycling. Interference with PIN endocytosis either by auxin or by manipulation of the Arabidopsis Rab5 GTPase pathway prevents PIN polarization. Failure of PIN polarization transiently alters asymmetric auxin distribution during embryogenesis and increases the local auxin response in apical embryo regions. This results in ectopic expression of auxin pathway-associated root-forming master regulators in embryonic leaves and promotes homeotic transformation of leaves to roots. Our results indicate a two-step mechanism for the generation of PIN polar localization and the essential role of endocytosis in this process. It also highlights the link between endocytosis-dependent polarity of individual cells and auxin distribution-dependent cell fate establishment for multicellular patterning."}],"quality_controlled":0,"author":[{"first_name":"Pankaj","full_name":"Dhonukshe, Pankaj","last_name":"Dhonukshe"},{"first_name":"Hirokazu","full_name":"Tanaka, Hirokazu","last_name":"Tanaka"},{"last_name":"Goh","first_name":"Tatsuaki","full_name":"Goh, Tatsuaki"},{"last_name":"Ebine","full_name":"Ebine, Kazuo","first_name":"Kazuo"},{"full_name":"Mähönen, Ari Pekka","first_name":"Ari","last_name":"Mähönen"},{"full_name":"Prasad, Kalika","first_name":"Kalika","last_name":"Prasad"},{"first_name":"Ikram","full_name":"Blilou, Ikram","last_name":"Blilou"},{"full_name":"Geldner, Niko","first_name":"Niko","last_name":"Geldner"},{"last_name":"Xu","first_name":"Jian","full_name":"Xu, Jian"},{"last_name":"Uemura","full_name":"Uemura, Tomohiro","first_name":"Tomohiro"},{"full_name":"Chory, Joanne","first_name":"Joanne","last_name":"Chory"},{"first_name":"Takashi","full_name":"Ueda, Takashi","last_name":"Ueda"},{"last_name":"Nakano","first_name":"Akihiko","full_name":"Nakano, Akihiko"},{"last_name":"Scheres","full_name":"Scheres, Ben","first_name":"Ben"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Jirí Friml","first_name":"Jirí"}],"page":"962 - 966","issue":"7224","status":"public","_id":"3045","publication_status":"published","intvolume":"       456","month":"12","publication":"Nature","publisher":"Nature Publishing Group","day":"18","year":"2008","title":"Generation of cell polarity in plants links endocytosis auxin distribution and cell fate decisions","citation":{"chicago":"Dhonukshe, Pankaj, Hirokazu Tanaka, Tatsuaki Goh, Kazuo Ebine, Ari Mähönen, Kalika Prasad, Ikram Blilou, et al. “Generation of Cell Polarity in Plants Links Endocytosis Auxin Distribution and Cell Fate Decisions.” <i>Nature</i>. Nature Publishing Group, 2008. <a href=\"https://doi.org/10.1038/nature07409\">https://doi.org/10.1038/nature07409</a>.","apa":"Dhonukshe, P., Tanaka, H., Goh, T., Ebine, K., Mähönen, A., Prasad, K., … Friml, J. (2008). Generation of cell polarity in plants links endocytosis auxin distribution and cell fate decisions. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature07409\">https://doi.org/10.1038/nature07409</a>","mla":"Dhonukshe, Pankaj, et al. “Generation of Cell Polarity in Plants Links Endocytosis Auxin Distribution and Cell Fate Decisions.” <i>Nature</i>, vol. 456, no. 7224, Nature Publishing Group, 2008, pp. 962–66, doi:<a href=\"https://doi.org/10.1038/nature07409\">10.1038/nature07409</a>.","short":"P. Dhonukshe, H. Tanaka, T. Goh, K. Ebine, A. Mähönen, K. Prasad, I. Blilou, N. Geldner, J. Xu, T. Uemura, J. Chory, T. Ueda, A. Nakano, B. Scheres, J. Friml, Nature 456 (2008) 962–966.","ista":"Dhonukshe P, Tanaka H, Goh T, Ebine K, Mähönen A, Prasad K, Blilou I, Geldner N, Xu J, Uemura T, Chory J, Ueda T, Nakano A, Scheres B, Friml J. 2008. Generation of cell polarity in plants links endocytosis auxin distribution and cell fate decisions. Nature. 456(7224), 962–966.","ama":"Dhonukshe P, Tanaka H, Goh T, et al. Generation of cell polarity in plants links endocytosis auxin distribution and cell fate decisions. <i>Nature</i>. 2008;456(7224):962-966. doi:<a href=\"https://doi.org/10.1038/nature07409\">10.1038/nature07409</a>","ieee":"P. Dhonukshe <i>et al.</i>, “Generation of cell polarity in plants links endocytosis auxin distribution and cell fate decisions,” <i>Nature</i>, vol. 456, no. 7224. Nature Publishing Group, pp. 962–966, 2008."},"date_updated":"2021-01-12T07:40:40Z","date_published":"2008-12-18T00:00:00Z","extern":1,"doi":"10.1038/nature07409","type":"journal_article","date_created":"2018-12-11T12:01:02Z","volume":456,"publist_id":"3657"},{"publication_status":"published","month":"01","status":"public","_id":"3194","conference":{"name":"ICML: International Conference on Machine Learning"},"author":[{"last_name":"Kohli","full_name":"Kohli, Pushmeet","first_name":"Pushmeet"},{"last_name":"Shekhovtsov","full_name":"Shekhovtsov, Alexander","first_name":"Alexander"},{"first_name":"Carsten","full_name":"Rother, Carsten","last_name":"Rother"},{"last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir","full_name":"Vladimir Kolmogorov"},{"last_name":"Torr","full_name":"Torr, Philip H","first_name":"Philip"}],"page":"480 - 487","quality_controlled":0,"abstract":[{"text":"We consider the problem of optimizing multilabel MRFs, which is in general NP-hard and ubiquitous in low-level computer vision. One approach for its solution is to formulate it as an integer linear programming and relax the integrality constraints. The approach we consider in this paper is to first convert the multi-label MRF into an equivalent binary-label MRF and then to relax it. The resulting relaxation can be efficiently solved using a maximum flow algorithm. Its solution provides us with a partially optimal labelling of the binary variables. This partial labelling is then easily transferred to the multi-label problem. We study the theoretical properties of the new relaxation and compare it with the standard one. Specifically, we compare tightness, and characterize a subclass of problems where the two relaxations coincide. We propose several combined algorithms based on the technique and demonstrate their performance on challenging computer vision problems.","lang":"eng"}],"publist_id":"3486","type":"conference","date_created":"2018-12-11T12:01:56Z","extern":1,"doi":"10.1145/1390156.1390217","date_published":"2008-01-01T00:00:00Z","date_updated":"2021-01-12T07:41:42Z","citation":{"ista":"Kohli P, Shekhovtsov A, Rother C, Kolmogorov V, Torr P. 2008. On partial optimality in multi label MRFs. ICML: International Conference on Machine Learning, 480–487.","ama":"Kohli P, Shekhovtsov A, Rother C, Kolmogorov V, Torr P. On partial optimality in multi label MRFs. In: Omnipress; 2008:480-487. doi:<a href=\"https://doi.org/10.1145/1390156.1390217\">10.1145/1390156.1390217</a>","ieee":"P. Kohli, A. Shekhovtsov, C. Rother, V. Kolmogorov, and P. Torr, “On partial optimality in multi label MRFs,” presented at the ICML: International Conference on Machine Learning, 2008, pp. 480–487.","chicago":"Kohli, Pushmeet, Alexander Shekhovtsov, Carsten Rother, Vladimir Kolmogorov, and Philip Torr. “On Partial Optimality in Multi Label MRFs,” 480–87. Omnipress, 2008. <a href=\"https://doi.org/10.1145/1390156.1390217\">https://doi.org/10.1145/1390156.1390217</a>.","apa":"Kohli, P., Shekhovtsov, A., Rother, C., Kolmogorov, V., &#38; Torr, P. (2008). On partial optimality in multi label MRFs (pp. 480–487). Presented at the ICML: International Conference on Machine Learning, Omnipress. <a href=\"https://doi.org/10.1145/1390156.1390217\">https://doi.org/10.1145/1390156.1390217</a>","mla":"Kohli, Pushmeet, et al. <i>On Partial Optimality in Multi Label MRFs</i>. Omnipress, 2008, pp. 480–87, doi:<a href=\"https://doi.org/10.1145/1390156.1390217\">10.1145/1390156.1390217</a>.","short":"P. Kohli, A. Shekhovtsov, C. Rother, V. Kolmogorov, P. Torr, in:, Omnipress, 2008, pp. 480–487."},"title":"On partial optimality in multi label MRFs","year":"2008","day":"01","publisher":"Omnipress","main_file_link":[{"open_access":"0","url":"http://research.microsoft.com/pubs/77356/icml08-partoptmrf.pdf"}]},{"conference":{"name":"CVPR: Computer Vision and Pattern Recognition"},"_id":"3195","status":"public","month":"08","publication_status":"published","abstract":[{"text":"Graph cut is a popular technique for interactive image segmentation. However, it has certain shortcomings. In particular, graph cut has problems with segmenting thin elongated objects due to the ldquoshrinking biasrdquo. To overcome this problem, we propose to impose an additional connectivity prior, which is a very natural assumption about objects. We formulate several versions of the connectivity constraint and show that the corresponding optimization problems are all NP-hard. For some of these versions we propose two optimization algorithms: (i) a practical heuristic technique which we call DijkstraGC, and (ii) a slow method based on problem decomposition which provides a lower bound on the problem. We use the second technique to verify that for some practical examples DijkstraGC is able to find the global minimum.","lang":"eng"}],"quality_controlled":0,"author":[{"last_name":"Vicente","full_name":"Vicente, Sara","first_name":"Sara"},{"id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov","full_name":"Vladimir Kolmogorov","first_name":"Vladimir"},{"first_name":"Carsten","full_name":"Rother, Carsten","last_name":"Rother"}],"date_published":"2008-08-05T00:00:00Z","doi":"10.1109/CVPR.2008.4587440","extern":1,"date_created":"2018-12-11T12:01:57Z","type":"conference","publist_id":"3487","main_file_link":[{"open_access":"0","url":"http://research.microsoft.com/pubs/80485/CVPR08-ConnectedGC.pdf"}],"publisher":"IEEE","day":"05","year":"2008","title":"Graph cut based image segmentation with connectivity priors","date_updated":"2021-01-12T07:41:43Z","citation":{"ista":"Vicente S, Kolmogorov V, Rother C. 2008. Graph cut based image segmentation with connectivity priors. CVPR: Computer Vision and Pattern Recognition.","ieee":"S. Vicente, V. Kolmogorov, and C. Rother, “Graph cut based image segmentation with connectivity priors,” presented at the CVPR: Computer Vision and Pattern Recognition, 2008.","ama":"Vicente S, Kolmogorov V, Rother C. Graph cut based image segmentation with connectivity priors. In: IEEE; 2008. doi:<a href=\"https://doi.org/10.1109/CVPR.2008.4587440\">10.1109/CVPR.2008.4587440</a>","chicago":"Vicente, Sara, Vladimir Kolmogorov, and Carsten Rother. “Graph Cut Based Image Segmentation with Connectivity Priors.” IEEE, 2008. <a href=\"https://doi.org/10.1109/CVPR.2008.4587440\">https://doi.org/10.1109/CVPR.2008.4587440</a>.","apa":"Vicente, S., Kolmogorov, V., &#38; Rother, C. (2008). Graph cut based image segmentation with connectivity priors. Presented at the CVPR: Computer Vision and Pattern Recognition, IEEE. <a href=\"https://doi.org/10.1109/CVPR.2008.4587440\">https://doi.org/10.1109/CVPR.2008.4587440</a>","short":"S. Vicente, V. Kolmogorov, C. Rother, in:, IEEE, 2008.","mla":"Vicente, Sara, et al. <i>Graph Cut Based Image Segmentation with Connectivity Priors</i>. IEEE, 2008, doi:<a href=\"https://doi.org/10.1109/CVPR.2008.4587440\">10.1109/CVPR.2008.4587440</a>."}},{"publication_status":"published","month":"06","intvolume":"        30","status":"public","_id":"3196","issue":"6","author":[{"first_name":"Richard","full_name":"Szeliski, Richard S","last_name":"Szeliski"},{"first_name":"Ramin","full_name":"Zabih, Ramin","last_name":"Zabih"},{"last_name":"Scharstein","first_name":"Daniel","full_name":"Scharstein, Daniel"},{"first_name":"Olga","full_name":"Veksler, Olga","last_name":"Veksler"},{"last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir","full_name":"Vladimir Kolmogorov"},{"last_name":"Agarwala","full_name":"Agarwala, Aseem","first_name":"Aseem"},{"full_name":"Tappen, Marshall F","first_name":"Marshall","last_name":"Tappen"},{"full_name":"Rother, Carsten","first_name":"Carsten","last_name":"Rother"}],"page":"1068 - 1080","quality_controlled":0,"abstract":[{"lang":"eng","text":"Among the most exciting advances in early vision has been the development of efficient energy minimization algorithms for pixel-labeling tasks such as depth or texture computation. It has been known for decades that such problems can be elegantly expressed as Markov random fields, yet the resulting energy minimization problems have been widely viewed as intractable. Algorithms such as graph cuts and loopy belief propagation (LBP) have proven to be very powerful: For example, such methods form the basis for almost all the top-performing stereo methods. However, the trade-offs among different energy minimization algorithms are still not well understood. In this paper, we describe a set of energy minimization benchmarks and use them to compare the solution quality and runtime of several common energy minimization algorithms. We investigate three promising methods-graph cuts, LBP, and tree-reweighted message passing-in addition to the well-known older iterated conditional mode (ICM) algorithm. Our benchmark problems are drawn from published energy functions used for stereo, image stitching, interactive segmentation, and denoising. We also provide a general-purpose software interface that allows vision researchers to easily switch between optimization methods. The benchmarks, code, images, and results are available at http://vision.middlebury.edu/MRF/."}],"publist_id":"3488","volume":30,"type":"journal_article","date_created":"2018-12-11T12:01:57Z","extern":1,"doi":"10.1109/TPAMI.2007.70844","date_published":"2008-06-01T00:00:00Z","date_updated":"2021-01-12T07:41:43Z","citation":{"apa":"Szeliski, R., Zabih, R., Scharstein, D., Veksler, O., Kolmogorov, V., Agarwala, A., … Rother, C. (2008). A comparative study of energy minimization methods for Markov random fields with smoothness-based priors. <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>. IEEE. <a href=\"https://doi.org/10.1109/TPAMI.2007.70844\">https://doi.org/10.1109/TPAMI.2007.70844</a>","short":"R. Szeliski, R. Zabih, D. Scharstein, O. Veksler, V. Kolmogorov, A. Agarwala, M. Tappen, C. Rother, IEEE Transactions on Pattern Analysis and Machine Intelligence 30 (2008) 1068–1080.","mla":"Szeliski, Richard, et al. “A Comparative Study of Energy Minimization Methods for Markov Random Fields with Smoothness-Based Priors.” <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>, vol. 30, no. 6, IEEE, 2008, pp. 1068–80, doi:<a href=\"https://doi.org/10.1109/TPAMI.2007.70844\">10.1109/TPAMI.2007.70844</a>.","chicago":"Szeliski, Richard, Ramin Zabih, Daniel Scharstein, Olga Veksler, Vladimir Kolmogorov, Aseem Agarwala, Marshall Tappen, and Carsten Rother. “A Comparative Study of Energy Minimization Methods for Markov Random Fields with Smoothness-Based Priors.” <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>. IEEE, 2008. <a href=\"https://doi.org/10.1109/TPAMI.2007.70844\">https://doi.org/10.1109/TPAMI.2007.70844</a>.","ama":"Szeliski R, Zabih R, Scharstein D, et al. A comparative study of energy minimization methods for Markov random fields with smoothness-based priors. <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>. 2008;30(6):1068-1080. doi:<a href=\"https://doi.org/10.1109/TPAMI.2007.70844\">10.1109/TPAMI.2007.70844</a>","ieee":"R. Szeliski <i>et al.</i>, “A comparative study of energy minimization methods for Markov random fields with smoothness-based priors,” <i>IEEE Transactions on Pattern Analysis and Machine Intelligence</i>, vol. 30, no. 6. IEEE, pp. 1068–1080, 2008.","ista":"Szeliski R, Zabih R, Scharstein D, Veksler O, Kolmogorov V, Agarwala A, Tappen M, Rother C. 2008. A comparative study of energy minimization methods for Markov random fields with smoothness-based priors. IEEE Transactions on Pattern Analysis and Machine Intelligence. 30(6), 1068–1080."},"title":"A comparative study of energy minimization methods for Markov random fields with smoothness-based priors","year":"2008","day":"01","publisher":"IEEE","publication":"IEEE Transactions on Pattern Analysis and Machine Intelligence"},{"type":"conference","date_created":"2018-12-11T12:01:58Z","volume":5303,"publist_id":"3485","date_published":"2008-01-01T00:00:00Z","extern":1,"doi":"10.1007/978-3-540-88688-4_44","title":"Feature correspondence via graph matching: Models and global optimization","year":"2008","citation":{"short":"L. Torresani, V. Kolmogorov, C. Rother, in:, Springer, 2008, pp. 596–609.","mla":"Torresani, Lorenzo, et al. <i>Feature Correspondence via Graph Matching: Models and Global Optimization</i>. Vol. 5303, Springer, 2008, pp. 596–609, doi:<a href=\"https://doi.org/10.1007/978-3-540-88688-4_44\">10.1007/978-3-540-88688-4_44</a>.","apa":"Torresani, L., Kolmogorov, V., &#38; Rother, C. (2008). Feature correspondence via graph matching: Models and global optimization (Vol. 5303, pp. 596–609). Presented at the ECCV: European Conference on Computer Vision, Springer. <a href=\"https://doi.org/10.1007/978-3-540-88688-4_44\">https://doi.org/10.1007/978-3-540-88688-4_44</a>","chicago":"Torresani, Lorenzo, Vladimir Kolmogorov, and Carsten Rother. “Feature Correspondence via Graph Matching: Models and Global Optimization,” 5303:596–609. Springer, 2008. <a href=\"https://doi.org/10.1007/978-3-540-88688-4_44\">https://doi.org/10.1007/978-3-540-88688-4_44</a>.","ieee":"L. Torresani, V. Kolmogorov, and C. Rother, “Feature correspondence via graph matching: Models and global optimization,” presented at the ECCV: European Conference on Computer Vision, 2008, vol. 5303, pp. 596–609.","ama":"Torresani L, Kolmogorov V, Rother C. Feature correspondence via graph matching: Models and global optimization. In: Vol 5303. Springer; 2008:596-609. doi:<a href=\"https://doi.org/10.1007/978-3-540-88688-4_44\">10.1007/978-3-540-88688-4_44</a>","ista":"Torresani L, Kolmogorov V, Rother C. 2008. Feature correspondence via graph matching: Models and global optimization. ECCV: European Conference on Computer Vision, LNCS, vol. 5303, 596–609."},"date_updated":"2021-01-12T07:41:44Z","publisher":"Springer","main_file_link":[{"url":"http://research-srv.microsoft.com/pubs/70610/eccv08-MatchingMRF.pdf","open_access":"0"}],"day":"01","status":"public","_id":"3198","intvolume":"      5303","publication_status":"published","month":"01","conference":{"name":"ECCV: European Conference on Computer Vision"},"quality_controlled":0,"author":[{"last_name":"Torresani","full_name":"Torresani, Lorenzo","first_name":"Lorenzo"},{"id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov","full_name":"Vladimir Kolmogorov","first_name":"Vladimir"},{"full_name":"Rother, Carsten","first_name":"Carsten","last_name":"Rother"}],"page":"596 - 609","alternative_title":["LNCS"],"abstract":[{"lang":"eng","text":"In this paper we present a new approach for establishing correspondences between sparse image features related by an unknown non-rigid mapping and corrupted by clutter and occlusion, such as points extracted from a pair of images containing a human figure in distinct poses. We formulate this matching task as an energy minimization problem by defining a complex objective function of the appearance and the spatial arrangement of the features. Optimization of this energy is an instance of graph matching, which is in general a NP-hard problem. We describe a novel graph matching optimization technique, which we refer to as dual decomposition (DD), and demonstrate on a variety of examples that this method outperforms existing graph matching algorithms. In the majority of our examples DD is able to find the global minimum within a minute. The ability to globally optimize the objective allows us to accurately learn the parameters of our matching model from training examples. We show on several matching tasks that our learned model yields results superior to those of state-of-the-art methods. "}]},{"publisher":"Springer","day":"28","year":"2008","title":"A new mode of operation for block ciphers and length preserving MACs","date_updated":"2021-01-12T07:41:55Z","citation":{"chicago":"Dodis, Yevgeniy, Krzysztof Z Pietrzak, and Prashant Puniya. “A New Mode of Operation for Block Ciphers and Length Preserving MACs,” 4965:198–219. Springer, 2008. <a href=\"https://doi.org/10.1007/978-3-540-78967-3_12\">https://doi.org/10.1007/978-3-540-78967-3_12</a>.","short":"Y. Dodis, K.Z. Pietrzak, P. Puniya, in:, Springer, 2008, pp. 198–219.","mla":"Dodis, Yevgeniy, et al. <i>A New Mode of Operation for Block Ciphers and Length Preserving MACs</i>. Vol. 4965, Springer, 2008, pp. 198–219, doi:<a href=\"https://doi.org/10.1007/978-3-540-78967-3_12\">10.1007/978-3-540-78967-3_12</a>.","apa":"Dodis, Y., Pietrzak, K. Z., &#38; Puniya, P. (2008). A new mode of operation for block ciphers and length preserving MACs (Vol. 4965, pp. 198–219). Presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Springer. <a href=\"https://doi.org/10.1007/978-3-540-78967-3_12\">https://doi.org/10.1007/978-3-540-78967-3_12</a>","ista":"Dodis Y, Pietrzak KZ, Puniya P. 2008. A new mode of operation for block ciphers and length preserving MACs. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 4965, 198–219.","ieee":"Y. Dodis, K. Z. Pietrzak, and P. Puniya, “A new mode of operation for block ciphers and length preserving MACs,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2008, vol. 4965, pp. 198–219.","ama":"Dodis Y, Pietrzak KZ, Puniya P. A new mode of operation for block ciphers and length preserving MACs. In: Vol 4965. Springer; 2008:198-219. doi:<a href=\"https://doi.org/10.1007/978-3-540-78967-3_12\">10.1007/978-3-540-78967-3_12</a>"},"date_published":"2008-04-28T00:00:00Z","doi":"10.1007/978-3-540-78967-3_12","extern":1,"date_created":"2018-12-11T12:02:07Z","type":"conference","volume":4965,"publist_id":"3456","alternative_title":["LNCS"],"abstract":[{"text":"We propose a new mode of operation, enciphered CBC, for domain extension of length-preserving functions (like block ciphers), which is a variation on the popular CBC mode of operation. Our new mode is twice slower than CBC, but has many (property-preserving) properties not enjoyed by CBC and other known modes. Most notably, it yields the first constant-rate Variable Input Length (VIL) MAC from any length preserving Fixed Input Length (FIL) MAC. This answers the question of Dodis and Puniya from Eurocrypt 2007. Further, our mode is a secure domain extender for PRFs (with basically the same security as encrypted CBC). This provides a hedge against the security of the block cipher: if the block cipher is pseudorandom, one gets a VIL-PRF, while if it is &quot;only&quot; unpredictable, one &quot;at least&quot; gets a VIL-MAC. Additionally, our mode yields a VIL random oracle (and, hence, a collision-resistant hash function) when instantiated with length-preserving random functions, or even random permutations (which can be queried from both sides). This means that one does not have to re-key the block cipher during the computation, which was critically used in most previous constructions (analyzed in the ideal cipher model). ","lang":"eng"}],"quality_controlled":0,"page":"198 - 219","author":[{"first_name":"Yevgeniy","full_name":"Dodis, Yevgeniy","last_name":"Dodis"},{"first_name":"Krzysztof Z","full_name":"Krzysztof Pietrzak","orcid":"0000-0002-9139-1654","last_name":"Pietrzak","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Puniya","full_name":"Puniya, Prashant","first_name":"Prashant"}],"conference":{"name":"EUROCRYPT: Theory and Applications of Cryptographic Techniques"},"_id":"3224","status":"public","month":"04","publication_status":"published","intvolume":"      4965"},{"alternative_title":["LNCS"],"abstract":[{"lang":"eng","text":"A robust multi-property combiner for a set of security properties merges two hash functions such that the resulting function satisfies each of the properties which at least one of the two starting functions has. Fischlin and Lehmann (TCC 2008) recently constructed a combiner which simultaneously preserves collision-resistance, target collision-resistance, message authentication, pseudorandomness and indifferentiability from a random oracle (IRO). Their combiner produces outputs of 5n bits, where n denotes the output length of the underlying hash functions. In this paper we propose improved combiners with shorter outputs. By sacrificing the indifferentiability from random oracles we obtain a combiner which preserves all of the other aforementioned properties but with output length 2n only. This matches a lower bound for black-box combiners for collision-resistance as the only property, showing that the other properties can be achieved without penalizing the length of the hash values. We then propose a combiner which also preserves the IRO property, slightly increasing the output length to 2n + ω(logn). Finally, we show that a twist on our combiners also makes them robust for one-wayness (but at the price of a fixed input length). "}],"quality_controlled":0,"page":"655 - 666","author":[{"first_name":"Marc","full_name":"Fischlin, Marc","last_name":"Fischlin"},{"last_name":"Lehmann","full_name":"Lehmann, Anja","first_name":"Anja"},{"first_name":"Krzysztof Z","orcid":"0000-0002-9139-1654","full_name":"Krzysztof Pietrzak","last_name":"Pietrzak","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87"}],"issue":"PART 2","conference":{"name":"ICALP: Automata, Languages and Programming"},"_id":"3225","status":"public","month":"08","publication_status":"published","intvolume":"      5126","publisher":"Springer","day":"06","related_material":{"record":[{"relation":"later_version","status":"public","id":"2852"}]},"title":"Robust multi property combiners for hash functions revisited","year":"2008","date_updated":"2023-02-23T11:01:10Z","citation":{"mla":"Fischlin, Marc, et al. <i>Robust Multi Property Combiners for Hash Functions Revisited</i>. Vol. 5126, no. PART 2, Springer, 2008, pp. 655–66, doi:<a href=\"https://doi.org/10.1007/978-3-540-70583-3_53\">10.1007/978-3-540-70583-3_53</a>.","short":"M. Fischlin, A. Lehmann, K.Z. Pietrzak, in:, Springer, 2008, pp. 655–666.","apa":"Fischlin, M., Lehmann, A., &#38; Pietrzak, K. Z. (2008). Robust multi property combiners for hash functions revisited (Vol. 5126, pp. 655–666). Presented at the ICALP: Automata, Languages and Programming, Springer. <a href=\"https://doi.org/10.1007/978-3-540-70583-3_53\">https://doi.org/10.1007/978-3-540-70583-3_53</a>","chicago":"Fischlin, Marc, Anja Lehmann, and Krzysztof Z Pietrzak. “Robust Multi Property Combiners for Hash Functions Revisited,” 5126:655–66. Springer, 2008. <a href=\"https://doi.org/10.1007/978-3-540-70583-3_53\">https://doi.org/10.1007/978-3-540-70583-3_53</a>.","ama":"Fischlin M, Lehmann A, Pietrzak KZ. Robust multi property combiners for hash functions revisited. In: Vol 5126. Springer; 2008:655-666. doi:<a href=\"https://doi.org/10.1007/978-3-540-70583-3_53\">10.1007/978-3-540-70583-3_53</a>","ieee":"M. Fischlin, A. Lehmann, and K. Z. Pietrzak, “Robust multi property combiners for hash functions revisited,” presented at the ICALP: Automata, Languages and Programming, 2008, vol. 5126, no. PART 2, pp. 655–666.","ista":"Fischlin M, Lehmann A, Pietrzak KZ. 2008. Robust multi property combiners for hash functions revisited. ICALP: Automata, Languages and Programming, LNCS, vol. 5126, 655–666."},"date_published":"2008-08-06T00:00:00Z","doi":"10.1007/978-3-540-70583-3_53","extern":1,"date_created":"2018-12-11T12:02:07Z","type":"conference","publist_id":"3454","volume":5126},{"date_updated":"2021-01-12T07:41:56Z","citation":{"apa":"Pietrzak, K. Z., &#38; Sjödin, J. (2008). Weak pseudorandom functions in minicrypt (Vol. 5126, pp. 423–436). Presented at the ICALP: Automata, Languages and Programming, Springer. <a href=\"https://doi.org/10.1007/978-3-540-70583-3_35\">https://doi.org/10.1007/978-3-540-70583-3_35</a>","short":"K.Z. Pietrzak, J. Sjödin, in:, Springer, 2008, pp. 423–436.","mla":"Pietrzak, Krzysztof Z., and Johan Sjödin. <i>Weak Pseudorandom Functions in Minicrypt</i>. Vol. 5126, no. PART 2, Springer, 2008, pp. 423–36, doi:<a href=\"https://doi.org/10.1007/978-3-540-70583-3_35\">10.1007/978-3-540-70583-3_35</a>.","chicago":"Pietrzak, Krzysztof Z, and Johan Sjödin. “Weak Pseudorandom Functions in Minicrypt,” 5126:423–36. Springer, 2008. <a href=\"https://doi.org/10.1007/978-3-540-70583-3_35\">https://doi.org/10.1007/978-3-540-70583-3_35</a>.","ieee":"K. Z. Pietrzak and J. Sjödin, “Weak pseudorandom functions in minicrypt,” presented at the ICALP: Automata, Languages and Programming, 2008, vol. 5126, no. PART 2, pp. 423–436.","ama":"Pietrzak KZ, Sjödin J. Weak pseudorandom functions in minicrypt. In: Vol 5126. Springer; 2008:423-436. doi:<a href=\"https://doi.org/10.1007/978-3-540-70583-3_35\">10.1007/978-3-540-70583-3_35</a>","ista":"Pietrzak KZ, Sjödin J. 2008. Weak pseudorandom functions in minicrypt. ICALP: Automata, Languages and Programming, LNCS, vol. 5126, 423–436."},"title":"Weak pseudorandom functions in minicrypt","year":"2008","day":"06","publisher":"Springer","volume":5126,"publist_id":"3455","date_created":"2018-12-11T12:02:07Z","type":"conference","doi":"10.1007/978-3-540-70583-3_35","extern":1,"date_published":"2008-08-06T00:00:00Z","page":"423 - 436","author":[{"id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak","orcid":"0000-0002-9139-1654","full_name":"Krzysztof Pietrzak","first_name":"Krzysztof Z"},{"first_name":"Johan","full_name":"Sjödin,  Johan","last_name":"Sjödin"}],"quality_controlled":0,"abstract":[{"lang":"eng","text":"A family of functions is weakly pseudorandom if a random member of the family is indistinguishable from a uniform random function when queried on random inputs. We point out a subtle ambiguity in the definition of weak PRFs: there are natural weak PRFs whose security breaks down if the randomness used to sample the inputs is revealed. To capture this ambiguity we distinguish between public-coin and secret-coin weak PRFs. We show that the existence of a secret-coin weak PRF which is not also a public-coin weak PRF implies the existence of two pass key-agreement (i.e. public-key encryption). So in Minicrypt, i.e. under the assumption that one-way functions exist but public-key cryptography does not, the notion of public- and secret-coin weak PRFs coincide. Previous to this paper all positive cryptographic statements known to hold exclusively in Minicrypt concerned the adaptive security of constructions using non-adaptively secure components. Weak PRFs give rise to a new set of statements having this property. As another example we consider the problem of range extension for weak PRFs. We show that in Minicrypt one can beat the best possible range expansion factor (using a fixed number of distinct keys) for a very general class of constructions (in particular, this class contains all constructions that are known today). "}],"acknowledgement":"This work was partially supported by the Zurich Information Security Center.","alternative_title":["LNCS"],"month":"08","intvolume":"      5126","publication_status":"published","_id":"3226","status":"public","conference":{"name":"ICALP: Automata, Languages and Programming"},"issue":"PART 2"},{"status":"public","_id":"3227","intvolume":"        84","publication_status":"published","month":"10","issue":"10","quality_controlled":0,"author":[{"full_name":"Zubielik, Piotr","first_name":"Piotr","last_name":"Zubielik"},{"last_name":"Nadaczny","full_name":"Nadaczny, Jerzy","first_name":"Jerzy"},{"last_name":"Pietrzak","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof Z","orcid":"0000-0002-9139-1654","full_name":"Krzysztof Pietrzak"},{"first_name":"Marcin","full_name":"Lawenda, Marcin","last_name":"Lawenda"}],"page":"239 - 242","abstract":[{"lang":"eng","text":"Large amount of data management can cause a lot of troubles which can be solved by dedicated computer system. To facilitate management of measurement data which are gathered in Institute of Power Engineering - Insulation Department a special system called Elektrowiz® was developed. It allows storing measurement results which concern partial discharges in insulation of turbo- and hydrogenerators in power stations. Multilayer architecture of the system allows reaching gathered data independently on user localization. There are possible different access methods to the system and dependency on current requirements data exploration can be realized with read-only or edit rights."}],"type":"journal_article","date_created":"2018-12-11T12:02:08Z","publist_id":"3452","volume":84,"date_published":"2008-10-01T00:00:00Z","extern":1,"title":"Elektrowiz – system of measurement data management","year":"2008","citation":{"ieee":"P. Zubielik, J. Nadaczny, K. Z. Pietrzak, and M. Lawenda, “Elektrowiz – system of measurement data management,” <i>Przeglad Elektrotechniczny</i>, vol. 84, no. 10. SIGMA-NOT, pp. 239–242, 2008.","ama":"Zubielik P, Nadaczny J, Pietrzak KZ, Lawenda M. Elektrowiz – system of measurement data management. <i>Przeglad Elektrotechniczny</i>. 2008;84(10):239-242.","ista":"Zubielik P, Nadaczny J, Pietrzak KZ, Lawenda M. 2008. Elektrowiz – system of measurement data management. Przeglad Elektrotechniczny. 84(10), 239–242.","short":"P. Zubielik, J. Nadaczny, K.Z. Pietrzak, M. Lawenda, Przeglad Elektrotechniczny 84 (2008) 239–242.","mla":"Zubielik, Piotr, et al. “Elektrowiz – System of Measurement Data Management.” <i>Przeglad Elektrotechniczny</i>, vol. 84, no. 10, SIGMA-NOT, 2008, pp. 239–42.","apa":"Zubielik, P., Nadaczny, J., Pietrzak, K. Z., &#38; Lawenda, M. (2008). Elektrowiz – system of measurement data management. <i>Przeglad Elektrotechniczny</i>. SIGMA-NOT.","chicago":"Zubielik, Piotr, Jerzy Nadaczny, Krzysztof Z Pietrzak, and Marcin Lawenda. “Elektrowiz – System of Measurement Data Management.” <i>Przeglad Elektrotechniczny</i>. SIGMA-NOT, 2008."},"date_updated":"2021-01-12T07:41:56Z","publisher":"SIGMA-NOT","publication":"Przeglad Elektrotechniczny","main_file_link":[{"url":"http://pe.org.pl/abstract_pl.php?nid=1917","open_access":"0"}],"day":"01"},{"citation":{"ama":"Pietrzak KZ. Compression from collisions or why CRHF combiners have a long output. In: Vol 5157. Springer; 2008:413-432. doi:<a href=\"https://doi.org/10.1007/978-3-540-85174-5_23\">10.1007/978-3-540-85174-5_23</a>","ieee":"K. Z. Pietrzak, “Compression from collisions or why CRHF combiners have a long output,” presented at the CRYPTO: International Cryptology Conference, 2008, vol. 5157, pp. 413–432.","ista":"Pietrzak KZ. 2008. Compression from collisions or why CRHF combiners have a long output. CRYPTO: International Cryptology Conference, LNCS, vol. 5157, 413–432.","apa":"Pietrzak, K. Z. (2008). Compression from collisions or why CRHF combiners have a long output (Vol. 5157, pp. 413–432). Presented at the CRYPTO: International Cryptology Conference, Springer. <a href=\"https://doi.org/10.1007/978-3-540-85174-5_23\">https://doi.org/10.1007/978-3-540-85174-5_23</a>","short":"K.Z. Pietrzak, in:, Springer, 2008, pp. 413–432.","mla":"Pietrzak, Krzysztof Z. <i>Compression from Collisions or Why CRHF Combiners Have a Long Output</i>. Vol. 5157, Springer, 2008, pp. 413–32, doi:<a href=\"https://doi.org/10.1007/978-3-540-85174-5_23\">10.1007/978-3-540-85174-5_23</a>.","chicago":"Pietrzak, Krzysztof Z. “Compression from Collisions or Why CRHF Combiners Have a Long Output,” 5157:413–32. Springer, 2008. <a href=\"https://doi.org/10.1007/978-3-540-85174-5_23\">https://doi.org/10.1007/978-3-540-85174-5_23</a>."},"date_updated":"2021-01-12T07:41:57Z","title":"Compression from collisions or why CRHF combiners have a long output","year":"2008","day":"11","publisher":"Springer","volume":5157,"publist_id":"3453","type":"conference","date_created":"2018-12-11T12:02:08Z","extern":1,"doi":"10.1007/978-3-540-85174-5_23","date_published":"2008-09-11T00:00:00Z","author":[{"id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak","orcid":"0000-0002-9139-1654","full_name":"Krzysztof Pietrzak","first_name":"Krzysztof Z"}],"page":"413 - 432","quality_controlled":0,"abstract":[{"text":"\nA black-box combiner for collision resistant hash functions (CRHF) is a construction which given black-box access to two hash functions is collision resistant if at least one of the components is collision resistant. In this paper we prove a lower bound on the output length of black-box combiners for CRHFs. The bound we prove is basically tight as it is achieved by a recent construction of Canetti et al [Crypto'07]. The best previously known lower bounds only ruled out a very restricted class of combiners having a very strong security reduction: the reduction was required to output collisions for both underlying candidate hash-functions given a single collision for the combiner (Canetti et al [Crypto'07] building on Boneh and Boyen [Crypto'06] and Pietrzak [Eurocrypt'07]). Our proof uses a lemma similar to the elegant &quot;reconstruction lemma&quot; of Gennaro and Trevisan [FOCS'00], which states that any function which is not one-way is compressible (and thus uniformly random function must be one-way). In a similar vein we show that a function which is not collision resistant is compressible. We also borrow ideas from recent work by Haitner et al. [FOCS'07], who show that one can prove the reconstruction lemma even relative to some very powerful oracles (in our case this will be an exponential time collision-finding oracle). © 2008 Springer-Verlag Berlin Heidelberg.","lang":"eng"}],"alternative_title":["LNCS"],"month":"09","publication_status":"published","intvolume":"      5157","status":"public","_id":"3228","conference":{"name":"CRYPTO: International Cryptology Conference"}},{"publication_status":"published","month":"10","status":"public","_id":"3229","conference":{"name":"FOCS: Foundations of Computer Science"},"author":[{"last_name":"Dziembowski","first_name":"Stefan","full_name":"Dziembowski, Stefan"},{"full_name":"Krzysztof Pietrzak","orcid":"0000-0002-9139-1654","first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak"}],"page":"293 - 302","quality_controlled":0,"abstract":[{"lang":"eng","text":"We construct a stream-cipher S whose implementation is secure even if a bounded amount of arbitrary (adversarially chosen) information on the internal state ofS is leaked during computation. This captures all possible side-channel attacks on S where the amount of information leaked in a given period is bounded, but overall can be arbitrary large. The only other assumption we make on the implementation of S is that only data that is accessed during computation leaks information. The stream-cipher S generates its output in chunks K1, K2, . . . and arbitrary but bounded information leakage is modeled by allowing the adversary to adaptively chose a function fl : {0,1}* rarr {0, 1}lambda before Kl is computed, she then gets fl(taul) where taul is the internal state ofS that is accessed during the computation of Kg. One notion of security we prove for S is that Kg is indistinguishable from random when given K1,..., K1-1,f1(tau1 ),..., fl-1(taul-1) and also the complete internal state of S after Kg has been computed (i.e. S is forward-secure). The construction is based on alternating extraction (used in the intrusion-resilient secret-sharing scheme from FOCS'07). We move this concept to the computational setting by proving a lemma that states that the output of any PRG has high HILLpseudoentropy (i.e. is indistinguishable from some distribution with high min-entropy) even if arbitrary information about the seed is leaked. The amount of leakage lambda that we can tolerate in each step depends on the strength of the underlying PRG, it is at least logarithmic, but can be as large as a constant fraction of the internal state of S if the PRG is exponentially hard."}],"publist_id":"3451","type":"conference","date_created":"2018-12-11T12:02:08Z","extern":1,"doi":"10.1109/FOCS.2008.56","date_published":"2008-10-28T00:00:00Z","citation":{"ista":"Dziembowski S, Pietrzak KZ. 2008. Leakage resilient cryptography. FOCS: Foundations of Computer Science, 293–302.","ama":"Dziembowski S, Pietrzak KZ. Leakage resilient cryptography. In: IEEE; 2008:293-302. doi:<a href=\"https://doi.org/10.1109/FOCS.2008.56\">10.1109/FOCS.2008.56</a>","ieee":"S. Dziembowski and K. Z. Pietrzak, “Leakage resilient cryptography,” presented at the FOCS: Foundations of Computer Science, 2008, pp. 293–302.","chicago":"Dziembowski, Stefan, and Krzysztof Z Pietrzak. “Leakage Resilient Cryptography,” 293–302. IEEE, 2008. <a href=\"https://doi.org/10.1109/FOCS.2008.56\">https://doi.org/10.1109/FOCS.2008.56</a>.","mla":"Dziembowski, Stefan, and Krzysztof Z. Pietrzak. <i>Leakage Resilient Cryptography</i>. IEEE, 2008, pp. 293–302, doi:<a href=\"https://doi.org/10.1109/FOCS.2008.56\">10.1109/FOCS.2008.56</a>.","short":"S. Dziembowski, K.Z. Pietrzak, in:, IEEE, 2008, pp. 293–302.","apa":"Dziembowski, S., &#38; Pietrzak, K. Z. (2008). Leakage resilient cryptography (pp. 293–302). Presented at the FOCS: Foundations of Computer Science, IEEE. <a href=\"https://doi.org/10.1109/FOCS.2008.56\">https://doi.org/10.1109/FOCS.2008.56</a>"},"date_updated":"2021-01-12T07:41:57Z","title":"Leakage resilient cryptography","year":"2008","day":"28","publisher":"IEEE"},{"publist_id":"3354","volume":7,"date_created":"2018-12-11T12:02:29Z","type":"journal_article","doi":"10.1128/EC.00065-08","extern":1,"date_published":"2008-06-13T00:00:00Z","date_updated":"2021-01-12T07:42:26Z","citation":{"ista":"Schmalhorst PS, Krappmann S, Vervecken W, Rohde M, Müller M, Braus G, Contreras R, Braun A, Bakker H, Routier F. 2008. Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus. Eukaryotic Cell. 7(8), 1268–1277.","ama":"Schmalhorst PS, Krappmann S, Vervecken W, et al. Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus. <i>Eukaryotic Cell</i>. 2008;7(8):1268-1277. doi:<a href=\"https://doi.org/10.1128/EC.00065-08\">10.1128/EC.00065-08</a>","ieee":"P. S. Schmalhorst <i>et al.</i>, “Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus,” <i>Eukaryotic Cell</i>, vol. 7, no. 8. American Society for Microbiology, pp. 1268–1277, 2008.","chicago":"Schmalhorst, Philipp S, Sven Krappmann, Wouter Vervecken, Manfred Rohde, Meike Müller, Gerhard Braus, Roland Contreras, Armin Braun, Hans Bakker, and Françoise Routier. “Contribution of Galactofuranose to the Virulence of the Opportunistic Pathogen Aspergillus Fumigatus.” <i>Eukaryotic Cell</i>. American Society for Microbiology, 2008. <a href=\"https://doi.org/10.1128/EC.00065-08\">https://doi.org/10.1128/EC.00065-08</a>.","apa":"Schmalhorst, P. S., Krappmann, S., Vervecken, W., Rohde, M., Müller, M., Braus, G., … Routier, F. (2008). Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus. <i>Eukaryotic Cell</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/EC.00065-08\">https://doi.org/10.1128/EC.00065-08</a>","mla":"Schmalhorst, Philipp S., et al. “Contribution of Galactofuranose to the Virulence of the Opportunistic Pathogen Aspergillus Fumigatus.” <i>Eukaryotic Cell</i>, vol. 7, no. 8, American Society for Microbiology, 2008, pp. 1268–77, doi:<a href=\"https://doi.org/10.1128/EC.00065-08\">10.1128/EC.00065-08</a>.","short":"P.S. Schmalhorst, S. Krappmann, W. Vervecken, M. Rohde, M. Müller, G. Braus, R. Contreras, A. Braun, H. Bakker, F. Routier, Eukaryotic Cell 7 (2008) 1268–1277."},"year":"2008","title":"Contribution of galactofuranose to the virulence of the opportunistic pathogen Aspergillus fumigatus","day":"13","publisher":"American Society for Microbiology","publication":"Eukaryotic Cell","intvolume":"         7","month":"06","publication_status":"published","_id":"3291","status":"public","issue":"8","page":"1268 - 1277","author":[{"first_name":"Philipp S","full_name":"Philipp Schmalhorst","orcid":"0000-0002-5795-0133","last_name":"Schmalhorst","id":"309D50DA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Sven","full_name":"Krappmann, Sven","last_name":"Krappmann"},{"full_name":"Vervecken, Wouter","first_name":"Wouter","last_name":"Vervecken"},{"last_name":"Rohde","first_name":"Manfred","full_name":"Rohde, Manfred"},{"first_name":"Meike","full_name":"Müller, Meike","last_name":"Müller"},{"first_name":"Gerhard","full_name":"Braus, Gerhard H.","last_name":"Braus"},{"last_name":"Contreras","first_name":"Roland","full_name":"Contreras, Roland"},{"first_name":"Armin","full_name":"Braun, Armin","last_name":"Braun"},{"last_name":"Bakker","first_name":"Hans","full_name":"Bakker, Hans"},{"last_name":"Routier","full_name":"Routier, Françoise H","first_name":"Françoise"}],"quality_controlled":0,"abstract":[{"text":"The filamentous fungus Aspergillus fumigatus is responsible for a lethal disease called Invasive Aspergillosis that affects immunocompromised patients. This disease, like other human fungal diseases, is generally treated by compounds targeting the primary fungal cell membrane sterol. Recently, glucan synthesis inhibitors were added to the limited antifungal arsenal and encouraged the search for novel targets in cell wall biosynthesis. Although galactomannan is a major component of the A. fumigatus cell wall and extracellular matrix, the biosynthesis and role of galactomannan are currently unknown. By a targeted gene deletion approach, we demonstrate that UDP-galactopyranose mutase, a key enzyme of galactofuranose metabolism, controls the biosynthesis of galactomannan and galactofuranose containing glycoconjugates. The glfA deletion mutant generated in this study is devoid of galactofuranose and displays attenuated virulence in a low-dose mouse model of invasive aspergillosis that likely reflects the impaired growth of the mutant at mammalian body temperature. Furthermore, the absence of galactofuranose results in a thinner cell wall that correlates with an increased susceptibility to several antifungal agents. The UDP-galactopyranose mutase thus appears to be an appealing adjunct therapeutic target in combination with other drugs against A. fumigatus. Its absence from mammalian cells indeed offers a considerable advantage to achieve therapeutic selectivity. ","lang":"eng"}]},{"abstract":[{"text":"A complete mitochondrial (mt) genome sequence was reconstructed from a 38,000 year-old Neandertal individual with 8341 mtDNA sequences identified among 4.8 Gb of DNA generated from ∼0.3 g of bone. Analysis of the assembled sequence unequivocally establishes that the Neandertal mtDNA falls outside the variation of extant human mtDNAs, and allows an estimate of the divergence date between the two mtDNA lineages of 660,000 ± 140,000 years. Of the 13 proteins encoded in the mtDNA, subunit 2 of cytochrome c oxidase of the mitochondrial electron transport chain has experienced the largest number of amino acid substitutions in human ancestors since the separation from Neandertals. There is evidence that purifying selection in the Neandertal mtDNA was reduced compared with other primate lineages, suggesting that the effective population size of Neandertals was small.","lang":"eng"}],"author":[{"last_name":"Green","first_name":"Richard","full_name":"Green, Richard E"},{"last_name":"Malaspinas","full_name":"Malaspinas, Anna-Sapfo ","first_name":"Anna"},{"last_name":"Krause","first_name":"Johannes","full_name":"Krause, Johannes"},{"first_name":"Adrian","full_name":"Briggs, Adrian W","last_name":"Briggs"},{"last_name":"Johnson","full_name":"Johnson, Philip L","first_name":"Philip"},{"full_name":"Caroline Uhler","orcid":"0000-0002-7008-0216","first_name":"Caroline","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87","last_name":"Uhler"},{"first_name":"Matthias","full_name":"Meyer, Matthias","last_name":"Meyer"},{"first_name":"Jeffrey","full_name":"Good, Jeffrey M","last_name":"Good"},{"first_name":"Tomislav","full_name":"Maricic, Tomislav","last_name":"Maricic"},{"full_name":"Stenzel, Udo","first_name":"Udo","last_name":"Stenzel"},{"first_name":"Kay","full_name":"Prüfer, Kay","last_name":"Prüfer"},{"last_name":"Siebauer","full_name":"Siebauer, Michael F","first_name":"Michael"},{"full_name":"Burbano, Hernän A","first_name":"Hernän","last_name":"Burbano"},{"full_name":"Ronan, Michael T","first_name":"Michael","last_name":"Ronan"},{"first_name":"Jonathan","full_name":"Rothberg, Jonathan M","last_name":"Rothberg"},{"last_name":"Egholm","first_name":"Michael","full_name":"Egholm, Michael"},{"last_name":"Rudan","full_name":"Rudan, Pavao","first_name":"Pavao"},{"full_name":"Brajković, Dejana","first_name":"Dejana","last_name":"Brajković"},{"last_name":"Kućan","full_name":"Kućan, Željko","first_name":"Željko"},{"full_name":"Gušić, Ivan","first_name":"Ivan","last_name":"Gušić"},{"last_name":"Wikström","first_name":"Mårten","full_name":"Wikström, Mårten K"},{"last_name":"Laakkonen","full_name":"Laakkonen, Liisa J","first_name":"Liisa"},{"first_name":"Janet","full_name":"Kelso, Janet F","last_name":"Kelso"},{"first_name":"Montgomery","full_name":"Slatkin, Montgomery","last_name":"Slatkin"},{"last_name":"Pääbo","first_name":"Svante","full_name":"Pääbo, Svante H"}],"page":"416 - 426","quality_controlled":0,"publication_status":"published","intvolume":"       134","month":"08","status":"public","_id":"3307","oa":1,"day":"01","publication":"Cell","publisher":"Cell Press","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2602844/","open_access":"1"}],"citation":{"ista":"Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.","ieee":"R. Green <i>et al.</i>, “A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing,” <i>Cell</i>, vol. 134. Cell Press, pp. 416–426, 2008.","ama":"Green R, Malaspinas A, Krause J, et al. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. <i>Cell</i>. 2008;134:416-426. doi:<a href=\"https://doi.org/10.1016/j.cell.2008.06.021\">10.1016/j.cell.2008.06.021</a>","chicago":"Green, Richard, Anna Malaspinas, Johannes Krause, Adrian Briggs, Philip Johnson, Caroline Uhler, Matthias Meyer, et al. “A Complete Neandertal Mitochondrial Genome Sequence Determined by Highhhroughput Sequencing.” <i>Cell</i>. Cell Press, 2008. <a href=\"https://doi.org/10.1016/j.cell.2008.06.021\">https://doi.org/10.1016/j.cell.2008.06.021</a>.","mla":"Green, Richard, et al. “A Complete Neandertal Mitochondrial Genome Sequence Determined by Highhhroughput Sequencing.” <i>Cell</i>, vol. 134, Cell Press, 2008, pp. 416–26, doi:<a href=\"https://doi.org/10.1016/j.cell.2008.06.021\">10.1016/j.cell.2008.06.021</a>.","short":"R. Green, A. Malaspinas, J. Krause, A. Briggs, P. Johnson, C. Uhler, M. Meyer, J. Good, T. Maricic, U. Stenzel, K. Prüfer, M. Siebauer, H. Burbano, M. Ronan, J. Rothberg, M. Egholm, P. Rudan, D. Brajković, Ž. Kućan, I. Gušić, M. Wikström, L. Laakkonen, J. Kelso, M. Slatkin, S. Pääbo, Cell 134 (2008) 416–426.","apa":"Green, R., Malaspinas, A., Krause, J., Briggs, A., Johnson, P., Uhler, C., … Pääbo, S. (2008). A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2008.06.021\">https://doi.org/10.1016/j.cell.2008.06.021</a>"},"date_updated":"2021-01-12T07:42:32Z","year":"2008","title":"A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing","extern":1,"doi":"10.1016/j.cell.2008.06.021","date_published":"2008-08-01T00:00:00Z","volume":134,"publist_id":"3333","type":"journal_article","date_created":"2018-12-11T12:02:35Z"},{"language":[{"iso":"eng"}],"publication_status":"published","intvolume":"        20","external_id":{"pmid":["18938243"]},"month":"12","oa_version":"None","_id":"11109","status":"public","article_type":"original","author":[{"first_name":"Ulrike","full_name":"Kutay, Ulrike","last_name":"Kutay"},{"full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER"}],"quality_controlled":"1","article_processing_charge":"No","volume":20,"publication_identifier":{"issn":["0955-0674"]},"date_created":"2022-04-07T07:55:00Z","type":"journal_article","date_published":"2008-12-01T00:00:00Z","scopus_import":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","date_updated":"2022-07-18T08:55:32Z","year":"2008","issue":"6","page":"669-677","pmid":1,"abstract":[{"lang":"eng","text":"The nuclear envelope (NE) provides a selective barrier between the nuclear interior and the cytoplasm and constitutes a central component of intracellular architecture. During mitosis in metazoa, the NE breaks down leading to the complete mixing of the nuclear content with the cytosol. Interestingly, many NE components actively participate in mitotic progression. After chromosome segregation, the NE is reassembled around decondensing chromatin and the nuclear compartment is reestablished in the daughter cells. Here, we summarize recent progress in deciphering the molecular mechanisms underlying NE dynamics during cell division."}],"doi":"10.1016/j.ceb.2008.09.010","extern":"1","keyword":["Cell Biology"],"citation":{"ista":"Kutay U, Hetzer M. 2008. Reorganization of the nuclear envelope during open mitosis. Current Opinion in Cell Biology. 20(6), 669–677.","ama":"Kutay U, Hetzer M. Reorganization of the nuclear envelope during open mitosis. <i>Current Opinion in Cell Biology</i>. 2008;20(6):669-677. doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">10.1016/j.ceb.2008.09.010</a>","ieee":"U. Kutay and M. Hetzer, “Reorganization of the nuclear envelope during open mitosis,” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 6. Elsevier, pp. 669–677, 2008.","chicago":"Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope during Open Mitosis.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">https://doi.org/10.1016/j.ceb.2008.09.010</a>.","mla":"Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope during Open Mitosis.” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 6, Elsevier, 2008, pp. 669–77, doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">10.1016/j.ceb.2008.09.010</a>.","short":"U. Kutay, M. Hetzer, Current Opinion in Cell Biology 20 (2008) 669–677.","apa":"Kutay, U., &#38; Hetzer, M. (2008). Reorganization of the nuclear envelope during open mitosis. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">https://doi.org/10.1016/j.ceb.2008.09.010</a>"},"title":"Reorganization of the nuclear envelope during open mitosis","day":"01","publication":"Current Opinion in Cell Biology","publisher":"Elsevier"},{"status":"public","oa_version":"None","_id":"11110","intvolume":"        18","external_id":{"pmid":["18786826"]},"publication_status":"published","month":"10","language":[{"iso":"eng"}],"article_type":"review","quality_controlled":"1","author":[{"first_name":"Maximiliano A.","full_name":"D’Angelo, Maximiliano A.","last_name":"D’Angelo"},{"first_name":"Martin W","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"}],"article_processing_charge":"No","type":"journal_article","date_created":"2022-04-07T07:55:10Z","publication_identifier":{"issn":["0962-8924"]},"volume":18,"date_published":"2008-10-01T00:00:00Z","year":"2008","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","date_updated":"2022-07-18T08:55:33Z","scopus_import":"1","issue":"10","pmid":1,"page":"456-466","abstract":[{"text":"Nuclear pore complexes are large aqueous channels that penetrate the nuclear envelope, thereby connecting the nuclear interior with the cytoplasm. Until recently, these macromolecular complexes were viewed as static structures, the only function of which was to control the molecular trafficking between the two compartments. It has now become evident that this simplistic scenario is inaccurate and that nuclear pore complexes are highly dynamic multiprotein assemblies involved in diverse cellular processes ranging from the organization of the cytoskeleton to gene expression. In this review, we discuss the most recent developments in the nuclear-pore-complex field, focusing on the assembly, disassembly, maintenance and function of this macromolecular structure.","lang":"eng"}],"keyword":["Cell Biology"],"extern":"1","doi":"10.1016/j.tcb.2008.07.009","title":"Structure, dynamics and function of nuclear pore complexes","citation":{"chicago":"D’Angelo, Maximiliano A., and Martin Hetzer. “Structure, Dynamics and Function of Nuclear Pore Complexes.” <i>Trends in Cell Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">https://doi.org/10.1016/j.tcb.2008.07.009</a>.","mla":"D’Angelo, Maximiliano A., and Martin Hetzer. “Structure, Dynamics and Function of Nuclear Pore Complexes.” <i>Trends in Cell Biology</i>, vol. 18, no. 10, Elsevier, 2008, pp. 456–66, doi:<a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">10.1016/j.tcb.2008.07.009</a>.","short":"M.A. D’Angelo, M. Hetzer, Trends in Cell Biology 18 (2008) 456–466.","apa":"D’Angelo, M. A., &#38; Hetzer, M. (2008). Structure, dynamics and function of nuclear pore complexes. <i>Trends in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">https://doi.org/10.1016/j.tcb.2008.07.009</a>","ista":"D’Angelo MA, Hetzer M. 2008. Structure, dynamics and function of nuclear pore complexes. Trends in Cell Biology. 18(10), 456–466.","ama":"D’Angelo MA, Hetzer M. Structure, dynamics and function of nuclear pore complexes. <i>Trends in Cell Biology</i>. 2008;18(10):456-466. doi:<a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">10.1016/j.tcb.2008.07.009</a>","ieee":"M. A. D’Angelo and M. Hetzer, “Structure, dynamics and function of nuclear pore complexes,” <i>Trends in Cell Biology</i>, vol. 18, no. 10. Elsevier, pp. 456–466, 2008."},"publisher":"Elsevier","publication":"Trends in Cell Biology","day":"01"},{"issue":"5","abstract":[{"text":"During mitosis in metazoans, segregated chromosomes become enclosed by the nuclear envelope (NE), a double membrane that is continuous with the endoplasmic reticulum (ER). Recent in vitro data suggest that NE formation occurs by chromatin-mediated reorganization of the tubular ER; however, the basic principles of such a membrane-reshaping process remain uncharacterized. Here, we present a quantitative analysis of nuclear membrane assembly in mammalian cells using time-lapse microscopy. From the initial recruitment of ER tubules to chromatin, the formation of a membrane-enclosed, transport-competent nucleus occurs within ∼12 min. Overexpression of the ER tubule-forming proteins reticulon 3, reticulon 4, and DP1 inhibits NE formation and nuclear expansion, whereas their knockdown accelerates nuclear assembly. This suggests that the transition from membrane tubules to sheets is rate-limiting for nuclear assembly. Our results provide evidence that ER-shaping proteins are directly involved in the reconstruction of the nuclear compartment and that morphological restructuring of the ER is the principal mechanism of NE formation in vivo.","lang":"eng"}],"page":"911-924","pmid":1,"doi":"10.1083/jcb.200805140","extern":"1","keyword":["Cell Biology"],"day":"08","publication":"Journal of Cell Biology","publisher":"Rockefeller University Press","citation":{"mla":"Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum Limits the Rate for Nuclear Envelope Formation.” <i>Journal of Cell Biology</i>, vol. 182, no. 5, Rockefeller University Press, 2008, pp. 911–24, doi:<a href=\"https://doi.org/10.1083/jcb.200805140\">10.1083/jcb.200805140</a>.","short":"D.J. Anderson, M. Hetzer, Journal of Cell Biology 182 (2008) 911–924.","apa":"Anderson, D. J., &#38; Hetzer, M. (2008). Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.200805140\">https://doi.org/10.1083/jcb.200805140</a>","chicago":"Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum Limits the Rate for Nuclear Envelope Formation.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2008. <a href=\"https://doi.org/10.1083/jcb.200805140\">https://doi.org/10.1083/jcb.200805140</a>.","ieee":"D. J. Anderson and M. Hetzer, “Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation,” <i>Journal of Cell Biology</i>, vol. 182, no. 5. Rockefeller University Press, pp. 911–924, 2008.","ama":"Anderson DJ, Hetzer M. Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation. <i>Journal of Cell Biology</i>. 2008;182(5):911-924. doi:<a href=\"https://doi.org/10.1083/jcb.200805140\">10.1083/jcb.200805140</a>","ista":"Anderson DJ, Hetzer M. 2008. Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation. Journal of Cell Biology. 182(5), 911–924."},"title":"Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation","article_type":"original","language":[{"iso":"eng"}],"intvolume":"       182","month":"09","publication_status":"published","external_id":{"pmid":["18779370"]},"_id":"11111","oa_version":"None","status":"public","article_processing_charge":"No","author":[{"full_name":"Anderson, Daniel J.","first_name":"Daniel J.","last_name":"Anderson"},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","first_name":"Martin W"}],"quality_controlled":"1","date_published":"2008-09-08T00:00:00Z","volume":182,"publication_identifier":{"eissn":["1540-8140"],"issn":["0021-9525"]},"date_created":"2022-04-07T07:55:23Z","type":"journal_article","scopus_import":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","date_updated":"2022-07-18T08:56:02Z","year":"2008"},{"issue":"4","page":"386-392","pmid":1,"abstract":[{"lang":"eng","text":"The nuclear envelope is a double-layered membrane that encloses the nuclear genome and transcriptional machinery. In dividing cells of metazoa, the nucleus completely disassembles during mitosis, creating the need to re-establish the nuclear compartment at the end of each cell division. Given the crucial role of the nuclear envelope in gene regulation and cellular organization, it is not surprising that its biogenesis and organization have become active research areas. We will review recent insights into nuclear membrane dynamics during the cell cycle."}],"doi":"10.1016/j.ceb.2008.03.016","extern":"1","keyword":["Cell Biology"],"citation":{"ama":"Anderson DJ, Hetzer M. The life cycle of the metazoan nuclear envelope. <i>Current Opinion in Cell Biology</i>. 2008;20(4):386-392. doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">10.1016/j.ceb.2008.03.016</a>","ieee":"D. J. Anderson and M. Hetzer, “The life cycle of the metazoan nuclear envelope,” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 4. Elsevier, pp. 386–392, 2008.","ista":"Anderson DJ, Hetzer M. 2008. The life cycle of the metazoan nuclear envelope. Current Opinion in Cell Biology. 20(4), 386–392.","apa":"Anderson, D. J., &#38; Hetzer, M. (2008). The life cycle of the metazoan nuclear envelope. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">https://doi.org/10.1016/j.ceb.2008.03.016</a>","mla":"Anderson, Daniel J., and Martin Hetzer. “The Life Cycle of the Metazoan Nuclear Envelope.” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 4, Elsevier, 2008, pp. 386–92, doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">10.1016/j.ceb.2008.03.016</a>.","short":"D.J. Anderson, M. Hetzer, Current Opinion in Cell Biology 20 (2008) 386–392.","chicago":"Anderson, Daniel J, and Martin Hetzer. “The Life Cycle of the Metazoan Nuclear Envelope.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">https://doi.org/10.1016/j.ceb.2008.03.016</a>."},"title":"The life cycle of the metazoan nuclear envelope","day":"01","publisher":"Elsevier","publication":"Current Opinion in Cell Biology","language":[{"iso":"eng"}],"publication_status":"published","intvolume":"        20","external_id":{"pmid":["18495454"]},"month":"08","oa_version":"None","_id":"11112","status":"public","article_type":"original","author":[{"last_name":"Anderson","first_name":"Daniel J","full_name":"Anderson, Daniel J"},{"full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER"}],"quality_controlled":"1","article_processing_charge":"No","volume":20,"publication_identifier":{"issn":["0955-0674"]},"date_created":"2022-04-07T07:55:34Z","type":"journal_article","date_published":"2008-08-01T00:00:00Z","scopus_import":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","date_updated":"2022-07-18T08:56:07Z","year":"2008"},{"article_processing_charge":"No","author":[{"last_name":"Anderson","first_name":"Daniel J.","full_name":"Anderson, Daniel J."},{"orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER"}],"quality_controlled":"1","article_type":"letter_note","language":[{"iso":"eng"}],"intvolume":"       121","external_id":{"pmid":["18187447"]},"publication_status":"published","month":"01","_id":"11113","oa_version":"Published Version","status":"public","oa":1,"scopus_import":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","date_updated":"2022-07-18T08:56:10Z","year":"2008","date_published":"2008-01-15T00:00:00Z","volume":121,"publication_identifier":{"issn":["0021-9533"],"eissn":["1477-9137"]},"date_created":"2022-04-07T07:55:46Z","type":"journal_article","abstract":[{"text":"The nuclear envelope (NE), a double membrane enclosing the nucleus of eukaryotic cells, controls the flow of information between the nucleoplasm and the cytoplasm and provides a scaffold for the organization of chromatin and the cytoskeleton. In dividing metazoan cells, the NE breaks down at the onset of mitosis and then reforms around segregated chromosomes to generate the daughter nuclei. Recent data from intact cells and cell-free nuclear assembly systems suggest that the endoplasmic reticulum (ER) is the source of membrane for NE assembly. At the end of mitosis, ER membrane tubules are targeted to chromatin via tubule ends and reorganized into flat nuclear membrane sheets by specific DNA-binding membrane proteins. In contrast to previous models, which proposed vesicle fusion to be the principal mechanism of NE formation, these new studies suggest that the nuclear membrane forms by the chromatin-mediated reshaping of the ER.","lang":"eng"}],"page":"137-142","pmid":1,"issue":"2","day":"15","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1242/jcs.005777"}],"publication":"Journal of Cell Science","publisher":"The Company of Biologists","citation":{"apa":"Anderson, D. J., &#38; Hetzer, M. (2008). Shaping the endoplasmic reticulum into the nuclear envelope. <i>Journal of Cell Science</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/jcs.005777\">https://doi.org/10.1242/jcs.005777</a>","mla":"Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum into the Nuclear Envelope.” <i>Journal of Cell Science</i>, vol. 121, no. 2, The Company of Biologists, 2008, pp. 137–42, doi:<a href=\"https://doi.org/10.1242/jcs.005777\">10.1242/jcs.005777</a>.","short":"D.J. Anderson, M. Hetzer, Journal of Cell Science 121 (2008) 137–142.","chicago":"Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum into the Nuclear Envelope.” <i>Journal of Cell Science</i>. The Company of Biologists, 2008. <a href=\"https://doi.org/10.1242/jcs.005777\">https://doi.org/10.1242/jcs.005777</a>.","ieee":"D. J. Anderson and M. Hetzer, “Shaping the endoplasmic reticulum into the nuclear envelope,” <i>Journal of Cell Science</i>, vol. 121, no. 2. The Company of Biologists, pp. 137–142, 2008.","ama":"Anderson DJ, Hetzer M. Shaping the endoplasmic reticulum into the nuclear envelope. <i>Journal of Cell Science</i>. 2008;121(2):137-142. doi:<a href=\"https://doi.org/10.1242/jcs.005777\">10.1242/jcs.005777</a>","ista":"Anderson DJ, Hetzer M. 2008. Shaping the endoplasmic reticulum into the nuclear envelope. Journal of Cell Science. 121(2), 137–142."},"title":"Shaping the endoplasmic reticulum into the nuclear envelope","doi":"10.1242/jcs.005777","extern":"1","keyword":["Cell Biology"]},{"year":"2008","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","date_updated":"2022-07-18T08:56:36Z","scopus_import":"1","oa":1,"type":"journal_article","date_created":"2022-04-07T07:55:57Z","publication_identifier":{"issn":["1932-6203"]},"volume":3,"date_published":"2008-04-30T00:00:00Z","quality_controlled":"1","author":[{"last_name":"Schulte","full_name":"Schulte, Roberta","first_name":"Roberta"},{"full_name":"Talamas, Jessica","first_name":"Jessica","last_name":"Talamas"},{"full_name":"Doucet, Christine","first_name":"Christine","last_name":"Doucet"},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","first_name":"Martin W"}],"article_processing_charge":"No","status":"public","_id":"11114","oa_version":"Published Version","intvolume":"         3","month":"04","publication_status":"published","external_id":{"pmid":["18446240"]},"language":[{"iso":"eng"}],"article_type":"original","title":"Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions","citation":{"ista":"Schulte R, Talamas J, Doucet C, Hetzer M. 2008. Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions. PLoS ONE. 3(4), e2061.","ama":"Schulte R, Talamas J, Doucet C, Hetzer M. Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions. <i>PLoS ONE</i>. 2008;3(4). doi:<a href=\"https://doi.org/10.1371/journal.pone.0002061\">10.1371/journal.pone.0002061</a>","ieee":"R. Schulte, J. Talamas, C. Doucet, and M. Hetzer, “Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions,” <i>PLoS ONE</i>, vol. 3, no. 4. Public Library of Science, 2008.","chicago":"Schulte, Roberta, Jessica Talamas, Christine Doucet, and Martin Hetzer. “Single Bead Affinity Detection (SINBAD) for the Analysis of Protein-Protein Interactions.” <i>PLoS ONE</i>. Public Library of Science, 2008. <a href=\"https://doi.org/10.1371/journal.pone.0002061\">https://doi.org/10.1371/journal.pone.0002061</a>.","short":"R. Schulte, J. Talamas, C. Doucet, M. Hetzer, PLoS ONE 3 (2008).","mla":"Schulte, Roberta, et al. “Single Bead Affinity Detection (SINBAD) for the Analysis of Protein-Protein Interactions.” <i>PLoS ONE</i>, vol. 3, no. 4, e2061, Public Library of Science, 2008, doi:<a href=\"https://doi.org/10.1371/journal.pone.0002061\">10.1371/journal.pone.0002061</a>.","apa":"Schulte, R., Talamas, J., Doucet, C., &#38; Hetzer, M. (2008). Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions. <i>PLoS ONE</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0002061\">https://doi.org/10.1371/journal.pone.0002061</a>"},"publication":"PLoS ONE","publisher":"Public Library of Science","main_file_link":[{"open_access":"1","url":" https://doi.org/10.1371/journal.pone.0002061"}],"day":"30","keyword":["Multidisciplinary"],"extern":"1","doi":"10.1371/journal.pone.0002061","pmid":1,"abstract":[{"text":"We present a miniaturized pull-down method for the detection of protein-protein interactions using standard affinity chromatography reagents. Binding events between different proteins, which are color-coded with quantum dots (QDs), are visualized on single affinity chromatography beads by fluorescence microscopy. The use of QDs for single molecule detection allows the simultaneous analysis of multiple protein-protein binding events and reduces the amount of time and material needed to perform a pull-down experiment.","lang":"eng"}],"article_number":"e2061","issue":"4"}]