[{"oa":1,"publication_status":"published","author":[{"first_name":"Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"full_name":"Haller, Elmar","first_name":"Elmar","last_name":"Haller"},{"first_name":"Mattias","last_name":"Gustavsson","full_name":"Gustavsson, Mattias"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"last_name":"Liem","first_name":"Andreas","full_name":"Liem, Andreas"},{"first_name":"Holger","last_name":"Zellmer","full_name":"Zellmer, Holger"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}],"external_id":{"arxiv":["0812.5070"]},"arxiv":1,"publisher":"IOP Publishing Ltd.","doi":"10.1088/1367-2630/11/5/055036","publist_id":"6349","acknowledgement":"We are indebted to R Grimm for generous support and we thank S Knoop, N Boloufa, and O Dulieu for valuable discussions. We gratefully acknowledge funding by the Austrian Ministry of Science and Research (BMWF) and the Austrian Science Fund (FWF) in the form of a START prize grant. RH acknowledges support by the European Union in the form of a Marie-Curie International Incoming Fellowship (IIF).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","_id":"1041","intvolume":"        11","extern":"1","date_published":"2009-03-14T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/0812.5070","open_access":"1"}],"date_created":"2018-12-11T11:49:50Z","status":"public","date_updated":"2021-01-12T06:47:51Z","title":"Deeply bound ultracold molecules in an optical lattice","publication":"New Journal of Physics","day":"14","abstract":[{"text":"We demonstrate efficient transfer of ultracold molecules into a deeply bound rovibrational level of the singlet ground state potential in the presence of an optical lattice. The overall molecule creation efficiency is 25%, and the transfer efficiency to the rovibrational level |v = 73, J = 2) is above 80%. We find that the molecules in |v = 73, J = 2) are trapped in the optical lattice, and that the lifetime in the lattice is limited by optical excitation by the lattice light. The molecule trapping time for a lattice depth of 15 atomic recoil energies is about 20 ms. We determine the trapping frequency by the lattice phase and amplitude modulation technique. It will now be possible to transfer the molecules to the rovibrational ground state |v = 0, J = 0) in the presence of the optical lattice.","lang":"eng"}],"type":"journal_article","month":"03","volume":11,"year":"2009","oa_version":"None","citation":{"ista":"Danzl JG, Mark M, Haller E, Gustavsson M, Hart R, Liem A, Zellmer H, Nägerl H. 2009. Deeply bound ultracold molecules in an optical lattice. New Journal of Physics. 11.","chicago":"Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell Hart, Andreas Liem, Holger Zellmer, and Hanns Nägerl. “Deeply Bound Ultracold Molecules in an Optical Lattice.” <i>New Journal of Physics</i>. IOP Publishing Ltd., 2009. <a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">https://doi.org/10.1088/1367-2630/11/5/055036</a>.","ama":"Danzl JG, Mark M, Haller E, et al. Deeply bound ultracold molecules in an optical lattice. <i>New Journal of Physics</i>. 2009;11. doi:<a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">10.1088/1367-2630/11/5/055036</a>","apa":"Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Hart, R., Liem, A., … Nägerl, H. (2009). Deeply bound ultracold molecules in an optical lattice. <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">https://doi.org/10.1088/1367-2630/11/5/055036</a>","ieee":"J. G. Danzl <i>et al.</i>, “Deeply bound ultracold molecules in an optical lattice,” <i>New Journal of Physics</i>, vol. 11. IOP Publishing Ltd., 2009.","mla":"Danzl, Johann G., et al. “Deeply Bound Ultracold Molecules in an Optical Lattice.” <i>New Journal of Physics</i>, vol. 11, IOP Publishing Ltd., 2009, doi:<a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">10.1088/1367-2630/11/5/055036</a>.","short":"J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, R. Hart, A. Liem, H. Zellmer, H. Nägerl, New Journal of Physics 11 (2009)."},"language":[{"iso":"eng"}]},{"external_id":{"arxiv":["0811.2374"]},"publist_id":"6347","oa":1,"acknowledgement":"We are indebted to R. Grimm for generous support and we thank T. Bergeman, H.\r\nSalami, J. Hutson, J. Aldegunde, and E. Tiemann for valuable discussions. We\r\ngratefully acknowledge funding by the Austrian Ministry of Science and Research\r\n(BMWF) and the Austrian Science Fund (FWF) in the form of a START prize grant\r\nand by the European Science Foundation (ESF) in the framework of the EuroQUAM collective research project QuDipMol. R. H. acknowledges support by\r\nthe European Union in form of a Marie Curie International Incoming Fellowship\r\n(IIF).","article_processing_charge":"No","intvolume":"       142","publication":"Faraday Discussions","page":"283 - 295","day":"01","date_created":"2018-12-11T11:49:51Z","status":"public","language":[{"iso":"eng"}],"month":"01","arxiv":1,"publisher":"Royal Society of Chemistry","doi":"10.1039/b820542f","publication_status":"published","author":[{"last_name":"Danzl","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G"},{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"last_name":"Haller","first_name":"Elmar","full_name":"Haller, Elmar"},{"first_name":"Mattias","last_name":"Gustavsson","full_name":"Gustavsson, Mattias"},{"full_name":"Bouloufa, Nadia","last_name":"Bouloufa","first_name":"Nadia"},{"first_name":"Olivier","last_name":"Dulieu","full_name":"Dulieu, Olivier"},{"full_name":"Ritsch, Helmut","last_name":"Ritsch","first_name":"Helmut"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"last_name":"Nägerl","first_name":"Hanns","full_name":"Nägerl, Hanns"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1043","extern":"1","title":"Precision molecular spectroscopy for ground state transfer of molecular quantum gases","abstract":[{"text":"One possibility for the creation of ultracold, high phase space density quantum gases of molecules in the rovibronic ground state relies on first associating weakly-bound molecules from quantum-degenerate atomic gases on a Feshbach resonance and then transferring the molecules via several steps of coherent two-photon stimulated Raman adiabatic passage (STIRAP) into the rovibronic ground state. Here, in ultracold samples of Cs2 Feshbach molecules produced out of ultracold samples of Cs atoms, we observe several optical transitions to deeply-bound rovibrational levels of the excited 0 u+ molecular potentials with high resolution. At least one of these transitions, although rather weak, allows efficient STIRAP transfer into the deeply-bound vibrational level v = 73&gt; of the singlet X 1Σg+ ground state potential, as recently demonstrated (J. G. Danzl, E. Haller, M. Gustavsson, M. J. Mark, R. Hart, N. Bouloufa, O. Dulieu, H. Ritsch, and H.-C. Nägerl, Science, 2008, 321, 1062). From this level, the rovibrational ground state v = 0, J = 0&gt; can be reached with one more transfer step. In total, our results show that coherent ground state transfer for Cs2 is possible using a maximum of two successive two-photon STIRAP processes or one single four-photon STIRAP process.","lang":"eng"}],"date_published":"2009-01-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0811.2374"}],"date_updated":"2021-01-12T06:47:52Z","citation":{"chicago":"Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Nadia Bouloufa, Olivier Dulieu, Helmut Ritsch, Russell Hart, and Hanns Nägerl. “Precision Molecular Spectroscopy for Ground State Transfer of Molecular Quantum Gases.” <i>Faraday Discussions</i>. Royal Society of Chemistry, 2009. <a href=\"https://doi.org/10.1039/b820542f\">https://doi.org/10.1039/b820542f</a>.","ista":"Danzl JG, Mark M, Haller E, Gustavsson M, Bouloufa N, Dulieu O, Ritsch H, Hart R, Nägerl H. 2009. Precision molecular spectroscopy for ground state transfer of molecular quantum gases. Faraday Discussions. 142, 283–295.","mla":"Danzl, Johann G., et al. “Precision Molecular Spectroscopy for Ground State Transfer of Molecular Quantum Gases.” <i>Faraday Discussions</i>, vol. 142, Royal Society of Chemistry, 2009, pp. 283–95, doi:<a href=\"https://doi.org/10.1039/b820542f\">10.1039/b820542f</a>.","ieee":"J. G. Danzl <i>et al.</i>, “Precision molecular spectroscopy for ground state transfer of molecular quantum gases,” <i>Faraday Discussions</i>, vol. 142. Royal Society of Chemistry, pp. 283–295, 2009.","short":"J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, N. Bouloufa, O. Dulieu, H. Ritsch, R. Hart, H. Nägerl, Faraday Discussions 142 (2009) 283–295.","ama":"Danzl JG, Mark M, Haller E, et al. Precision molecular spectroscopy for ground state transfer of molecular quantum gases. <i>Faraday Discussions</i>. 2009;142:283-295. doi:<a href=\"https://doi.org/10.1039/b820542f\">10.1039/b820542f</a>","apa":"Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Bouloufa, N., Dulieu, O., … Nägerl, H. (2009). Precision molecular spectroscopy for ground state transfer of molecular quantum gases. <i>Faraday Discussions</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/b820542f\">https://doi.org/10.1039/b820542f</a>"},"oa_version":"Preprint","type":"journal_article","volume":142,"year":"2009"},{"article_processing_charge":"No","quality_controlled":"1","intvolume":"       324","external_id":{"pmid":["19520962"]},"oa":1,"language":[{"iso":"eng"}],"article_type":"original","month":"06","publication":"Science","page":"1451-1454","day":"12","date_created":"2021-06-04T08:55:41Z","status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"9453","extern":"1","pmid":1,"publisher":"American Association for the Advancement of Science","doi":"10.1126/science.1172417","publication_status":"published","author":[{"full_name":"Hsieh, Tzung-Fu","last_name":"Hsieh","first_name":"Tzung-Fu"},{"full_name":"Ibarra, Christian A.","last_name":"Ibarra","first_name":"Christian A."},{"full_name":"Silva, Pedro","first_name":"Pedro","last_name":"Silva"},{"first_name":"Assaf","last_name":"Zemach","full_name":"Zemach, Assaf"},{"full_name":"Eshed-Williams, Leor","first_name":"Leor","last_name":"Eshed-Williams"},{"last_name":"Fischer","first_name":"Robert L.","full_name":"Fischer, Robert L."},{"first_name":"Daniel","last_name":"Zilberman","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"}],"department":[{"_id":"DaZi"}],"citation":{"short":"T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. Zilberman, Science 324 (2009) 1451–1454.","ieee":"T.-F. Hsieh <i>et al.</i>, “Genome-wide demethylation of Arabidopsis endosperm,” <i>Science</i>, vol. 324, no. 5933. American Association for the Advancement of Science, pp. 1451–1454, 2009.","mla":"Hsieh, Tzung-Fu, et al. “Genome-Wide Demethylation of Arabidopsis Endosperm.” <i>Science</i>, vol. 324, no. 5933, American Association for the Advancement of Science, 2009, pp. 1451–54, doi:<a href=\"https://doi.org/10.1126/science.1172417\">10.1126/science.1172417</a>.","ama":"Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis endosperm. <i>Science</i>. 2009;324(5933):1451-1454. doi:<a href=\"https://doi.org/10.1126/science.1172417\">10.1126/science.1172417</a>","apa":"Hsieh, T.-F., Ibarra, C. A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R. L., &#38; Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1172417\">https://doi.org/10.1126/science.1172417</a>","chicago":"Hsieh, Tzung-Fu, Christian A. Ibarra, Pedro Silva, Assaf Zemach, Leor Eshed-Williams, Robert L. Fischer, and Daniel Zilberman. “Genome-Wide Demethylation of Arabidopsis Endosperm.” <i>Science</i>. American Association for the Advancement of Science, 2009. <a href=\"https://doi.org/10.1126/science.1172417\">https://doi.org/10.1126/science.1172417</a>.","ista":"Hsieh T-F, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science. 324(5933), 1451–1454."},"oa_version":"Submitted Version","keyword":["Multidisciplinary"],"type":"journal_article","publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]},"scopus_import":"1","year":"2009","volume":324,"title":"Genome-wide demethylation of Arabidopsis endosperm","abstract":[{"lang":"eng","text":"Parent-of-origin-specific (imprinted) gene expression is regulated in Arabidopsis thaliana endosperm by cytosine demethylation of the maternal genome mediated by the DNA glycosylase DEMETER, but the extent of the methylation changes is not known. Here, we show that virtually the entire endosperm genome is demethylated, coupled with extensive local non-CG hypermethylation of small interfering RNA–targeted sequences. Mutation of DEMETER partially restores endosperm CG methylation to levels found in other tissues, indicating that CG demethylation is specific to maternal sequences. Endosperm demethylation is accompanied by CHH hypermethylation of embryo transposable elements. Our findings demonstrate extensive reconfiguration of the endosperm methylation landscape that likely reinforces transposon silencing in the embryo."}],"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044190/"}],"date_published":"2009-06-12T00:00:00Z","issue":"5933","date_updated":"2021-12-14T08:53:26Z"},{"quality_controlled":0,"_id":"964","extern":1,"intvolume":"      1134","publisher":"American Institute of Physics","publist_id":"6435","doi":"10.1063/1.3149485","publication_status":"published","author":[{"full_name":"Maksym Serbyn","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym","last_name":"Serbyn"},{"last_name":"Skvortsov","first_name":"Mikhail","full_name":"Skvortsov, Mikhail A"},{"full_name":"Varlamov, Andrei A","first_name":"Andrei","last_name":"Varlamov"},{"first_name":"Victor","last_name":"Galitski","full_name":"Galitski, Victor M"}],"citation":{"ista":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2009. Giant nernst effect due to fluctuating cooper Pairs in superconductors. Landau Memorial Conference on Advances in Theoretical Physics vol. 1134, 140–145.","chicago":"Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski. “Giant Nernst Effect Due to Fluctuating Cooper Pairs in Superconductors,” 1134:140–45. American Institute of Physics, 2009. <a href=\"https://doi.org/10.1063/1.3149485\">https://doi.org/10.1063/1.3149485</a>.","apa":"Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2009). Giant nernst effect due to fluctuating cooper Pairs in superconductors (Vol. 1134, pp. 140–145). Presented at the Landau Memorial Conference on Advances in Theoretical Physics, American Institute of Physics. <a href=\"https://doi.org/10.1063/1.3149485\">https://doi.org/10.1063/1.3149485</a>","ama":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. Giant nernst effect due to fluctuating cooper Pairs in superconductors. In: Vol 1134. American Institute of Physics; 2009:140-145. doi:<a href=\"https://doi.org/10.1063/1.3149485\">10.1063/1.3149485</a>","mla":"Serbyn, Maksym, et al. <i>Giant Nernst Effect Due to Fluctuating Cooper Pairs in Superconductors</i>. Vol. 1134, American Institute of Physics, 2009, pp. 140–45, doi:<a href=\"https://doi.org/10.1063/1.3149485\">10.1063/1.3149485</a>.","ieee":"M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Giant nernst effect due to fluctuating cooper Pairs in superconductors,” presented at the Landau Memorial Conference on Advances in Theoretical Physics, 2009, vol. 1134, pp. 140–145.","short":"M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, in:, American Institute of Physics, 2009, pp. 140–145."},"month":"01","type":"conference","year":"2009","volume":1134,"page":"140 - 145","title":"Giant nernst effect due to fluctuating cooper Pairs in superconductors","conference":{"name":"Landau Memorial Conference on Advances in Theoretical Physics"},"abstract":[{"text":"A theory of the fluctuation-induced Nernst efl'ect is developed for a two-dimensional superconductor in a perpendicular magnetic field. First, we derive a simple phenomenological formula for the Nernst coefficient, which naturally explains the giant Nernst signal due to fluctuating Cooper pairs. The latter signal is shown to be large even far from the transition and may exceed by orders of magnitude the Fermi liquid terms. We also present a complete microscopic calculation of the Nernst coefficient for arbitrary magnetic fields and temperatures, which is based on the standard definition of heat current vertices. It is shown that the magnitude and the behavior of the Nernst signal observed experimentally in disordered superconducting films can be well understood on the basis of superconducting fluctuation theory.","lang":"eng"}],"day":"01","date_created":"2018-12-11T11:49:26Z","date_published":"2009-01-01T00:00:00Z","status":"public","date_updated":"2021-01-12T08:22:17Z"},{"language":[{"iso":"eng"}],"citation":{"ama":"Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. Reconnection in three dimensions: The role of spines in three eruptive flares. <i>The Astrophysical Journal</i>. 2009;693(2):1628-1636. doi:<a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">10.1088/0004-637X/693/2/1628</a>","apa":"Des Jardins, A., Canfield, R., Longcope, D., Fordyce, C., &#38; Waitukaitis, S. R. (2009). Reconnection in three dimensions: The role of spines in three eruptive flares. <i>The Astrophysical Journal</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">https://doi.org/10.1088/0004-637X/693/2/1628</a>","ieee":"A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, and S. R. Waitukaitis, “Reconnection in three dimensions: The role of spines in three eruptive flares,” <i>The Astrophysical Journal</i>, vol. 693, no. 2. IOP Publishing Ltd., pp. 1628–1636, 2009.","mla":"Des Jardins, Angela, et al. “Reconnection in Three Dimensions: The Role of Spines in Three Eruptive Flares.” <i>The Astrophysical Journal</i>, vol. 693, no. 2, IOP Publishing Ltd., 2009, pp. 1628–36, doi:<a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">10.1088/0004-637X/693/2/1628</a>.","short":"A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, S.R. Waitukaitis, The Astrophysical Journal 693 (2009) 1628–1636.","ista":"Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. 2009. Reconnection in three dimensions: The role of spines in three eruptive flares. The Astrophysical Journal. 693(2), 1628–1636.","chicago":"Des Jardins, Angela, Richard Canfield, Dana Longcope, Crystal Fordyce, and Scott R Waitukaitis. “Reconnection in Three Dimensions: The Role of Spines in Three Eruptive Flares.” <i>The Astrophysical Journal</i>. IOP Publishing Ltd., 2009. <a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">https://doi.org/10.1088/0004-637X/693/2/1628</a>."},"oa_version":"None","volume":693,"year":"2009","type":"journal_article","month":"03","day":"10","abstract":[{"text":"In order to better understand magnetic reconnection and particle acceleration in solar flares, we compare the RHESSI hard X-ray (HXR) footpoint motions of three flares with a detailed study of the corresponding topology given by a Magnetic Charge Topology model. We analyze the relationship between the footpoint motions and topological spine lines and find that the examined footpoint sources move along spine lines. We present a three-dimensional topological model in which this movement can be understood. As reconnection proceeds, flux is transferred between the reconnecting domains, causing the separator to move. The movement of the separator\\'s chromospheric ends, identified with the HXR footpoints, is along those spine lines on which the separator ends.","lang":"eng"}],"publication":"The Astrophysical Journal","title":"Reconnection in three dimensions: The role of spines in three eruptive flares","page":"1628 - 1636","status":"public","date_updated":"2021-01-12T06:48:16Z","date_published":"2009-03-10T00:00:00Z","date_created":"2018-12-11T11:44:41Z","issue":"2","intvolume":"       693","extern":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported by RHESSI funds from the University of California at Berkeley through a contract, SA1868-26308PG, with Montana State University. Funding for our Research Experience for Undergraduates (REU) students was provided by NSF grant ATM-0243923.","_id":"110","quality_controlled":"1","doi":"10.1088/0004-637X/693/2/1628","publist_id":"7944","publisher":"IOP Publishing Ltd.","author":[{"full_name":"Des Jardins, Angela","first_name":"Angela","last_name":"Des Jardins"},{"full_name":"Canfield, Richard","last_name":"Canfield","first_name":"Richard"},{"first_name":"Dana","last_name":"Longcope","full_name":"Longcope, Dana"},{"last_name":"Fordyce","first_name":"Crystal","full_name":"Fordyce, Crystal"},{"orcid":"0000-0002-2299-3176","full_name":"Waitukaitis, Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","last_name":"Waitukaitis"}],"publication_status":"published"},{"month":"06","type":"journal_article","year":"2009","volume":459,"citation":{"chicago":"Royer, John, Daniel Evans, Loreto Oyarte, Qiti Guo, Eliot Kapit, Matthias Möbius, Scott R Waitukaitis, and Heinrich Jaeger. “High-Speed Tracking of Rupture and Clustering in Freely Falling Granular Streams.” <i>Nature</i>. Nature Publishing Group, 2009. <a href=\"https://doi.org/10.1038/nature08115\">https://doi.org/10.1038/nature08115</a>.","ista":"Royer J, Evans D, Oyarte L, Guo Q, Kapit E, Möbius M, Waitukaitis SR, Jaeger H. 2009. High-speed tracking of rupture and clustering in freely falling granular streams. Nature. 459(7250), 1110–1113.","short":"J. Royer, D. Evans, L. Oyarte, Q. Guo, E. Kapit, M. Möbius, S.R. Waitukaitis, H. Jaeger, Nature 459 (2009) 1110–1113.","mla":"Royer, John, et al. “High-Speed Tracking of Rupture and Clustering in Freely Falling Granular Streams.” <i>Nature</i>, vol. 459, no. 7250, Nature Publishing Group, 2009, pp. 1110–13, doi:<a href=\"https://doi.org/10.1038/nature08115\">10.1038/nature08115</a>.","ieee":"J. Royer <i>et al.</i>, “High-speed tracking of rupture and clustering in freely falling granular streams,” <i>Nature</i>, vol. 459, no. 7250. Nature Publishing Group, pp. 1110–1113, 2009.","apa":"Royer, J., Evans, D., Oyarte, L., Guo, Q., Kapit, E., Möbius, M., … Jaeger, H. (2009). High-speed tracking of rupture and clustering in freely falling granular streams. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature08115\">https://doi.org/10.1038/nature08115</a>","ama":"Royer J, Evans D, Oyarte L, et al. High-speed tracking of rupture and clustering in freely falling granular streams. <i>Nature</i>. 2009;459(7250):1110-1113. doi:<a href=\"https://doi.org/10.1038/nature08115\">10.1038/nature08115</a>"},"oa_version":"None","language":[{"iso":"eng"}],"date_created":"2018-12-11T11:44:41Z","issue":"7250","date_published":"2009-06-25T00:00:00Z","status":"public","date_updated":"2021-01-12T06:48:21Z","page":"1110 - 1113","title":"High-speed tracking of rupture and clustering in freely falling granular streams","publication":"Nature","abstract":[{"text":"Thin streams of liquid commonly break up into characteristic droplet patterns owing to the surface-tension-driven PlateauRayleigh instability 1-3. Very similar patterns are observed when initially uniform streams of dry granular material break up into clusters of grains4-6, even though flows of macroscopic particles are considered to lack surface tension7,8. Recent studies on freely falling granular streams tracked fluctuations in the stream profile9, but the clustering mechanism remained unresolved because the full evolution of the instability could not be observed. Here we demonstrate that the cluster formation is driven by minute, nanoNewton cohesive forces that arise from a combination of van der Waals interactions and capillary bridges between nanometre-scale surface asperities. Our experiments involve high-speed video imaging of the granular stream in the co-moving frame, control over the properties of the grain surfaces and the use of atomic force microscopy to measure grain-grain interactions. The cohesive forces that we measure correspond to an equivalent surface tension five orders of magnitude below that, of ordinary liquids. We find that, the shapes of these weakly cohesive, non-thermal clusters of macroscopic particles closely resemble droplets resulting from thermally induced rupture of liquid nanojets 10-12.","lang":"eng"}],"day":"25","quality_controlled":"1","_id":"111","acknowledgement":"This work was supported by NSF through its MRSEC programme and the Inter-American Materials Collaboration Chicago-Chile, and by the Keck Initiative for Ultrafast Imaging at the University of Chicago.","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","extern":"1","intvolume":"       459","publication_status":"published","author":[{"full_name":"Royer, John","last_name":"Royer","first_name":"John"},{"last_name":"Evans","first_name":"Daniel","full_name":"Evans, Daniel"},{"full_name":"Oyarte, Loreto","last_name":"Oyarte","first_name":"Loreto"},{"full_name":"Guo, Qiti","first_name":"Qiti","last_name":"Guo"},{"full_name":"Kapit, Eliot","first_name":"Eliot","last_name":"Kapit"},{"last_name":"Möbius","first_name":"Matthias","full_name":"Möbius, Matthias"},{"orcid":"0000-0002-2299-3176","full_name":"Waitukaitis, Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","last_name":"Waitukaitis"},{"full_name":"Jaeger, Heinrich","first_name":"Heinrich","last_name":"Jaeger"}],"publisher":"Nature Publishing Group","publist_id":"7943","doi":"10.1038/nature08115"},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2009.10.007"}],"date_published":"2009-11-17T00:00:00Z","issue":"5","date_updated":"2022-07-18T08:55:01Z","title":"Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes","abstract":[{"lang":"eng","text":"Over the last decade, the nuclear envelope (NE) has emerged as a key component in the organization and function of the nuclear genome. As many as 100 different proteins are thought to specifically localize to this double membrane that separates the cytoplasm and the nucleoplasm of eukaryotic cells. Selective portals through the NE are formed at sites where the inner and outer nuclear membranes are fused, and the coincident assembly of ∼30 proteins into nuclear pore complexes occurs. These nuclear pore complexes are essential for the control of nucleocytoplasmic exchange. Many of the NE and nuclear pore proteins are thought to play crucial roles in gene regulation and thus are increasingly linked to human diseases."}],"type":"journal_article","publication_identifier":{"issn":["1534-5807"]},"scopus_import":"1","volume":17,"year":"2009","oa_version":"Published Version","keyword":["Developmental Biology","Cell Biology","General Biochemistry","Genetics and Molecular Biology","Molecular Biology"],"citation":{"ista":"Hetzer M, Wente SR. 2009. Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. Developmental Cell. 17(5), 606–616.","chicago":"Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental Cell</i>. Elsevier, 2009. <a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">https://doi.org/10.1016/j.devcel.2009.10.007</a>.","ama":"Hetzer M, Wente SR. Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. <i>Developmental Cell</i>. 2009;17(5):606-616. doi:<a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">10.1016/j.devcel.2009.10.007</a>","apa":"Hetzer, M., &#38; Wente, S. R. (2009). Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">https://doi.org/10.1016/j.devcel.2009.10.007</a>","mla":"Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental Cell</i>, vol. 17, no. 5, Elsevier, 2009, pp. 606–16, doi:<a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">10.1016/j.devcel.2009.10.007</a>.","ieee":"M. Hetzer and S. R. Wente, “Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes,” <i>Developmental Cell</i>, vol. 17, no. 5. Elsevier, pp. 606–616, 2009.","short":"M. Hetzer, S.R. Wente, Developmental Cell 17 (2009) 606–616."},"publication_status":"published","author":[{"first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"},{"first_name":"Susan R.","last_name":"Wente","full_name":"Wente, Susan R."}],"publisher":"Elsevier","doi":"10.1016/j.devcel.2009.10.007","pmid":1,"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11103","extern":"1","date_created":"2022-04-07T07:53:45Z","status":"public","publication":"Developmental Cell","page":"606-616","day":"17","month":"11","article_type":"review","language":[{"iso":"eng"}],"oa":1,"external_id":{"pmid":["19922866"]},"article_processing_charge":"No","quality_controlled":"1","intvolume":"        17"},{"article_processing_charge":"No","quality_controlled":"1","intvolume":"        10","oa":1,"external_id":{"pmid":["19543230"]},"article_type":"original","month":"07","language":[{"iso":"eng"}],"date_created":"2022-04-07T07:54:06Z","status":"public","page":"697-705","related_material":{"link":[{"url":"https://doi.org/10.1038/embor.2009.176","relation":"erratum"}]},"publication":"EMBO reports","day":"01","pmid":1,"_id":"11105","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","extern":"1","author":[{"full_name":"Capelson, Maya","last_name":"Capelson","first_name":"Maya"},{"last_name":"HETZER","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W"}],"publication_status":"published","publisher":"EMBO","doi":"10.1038/embor.2009.147","publication_identifier":{"issn":["1469-221X"],"eissn":["1469-3178"]},"type":"journal_article","volume":10,"year":"2009","scopus_import":"1","oa_version":"Published Version","keyword":["Genetics","Molecular Biology","Biochemistry"],"citation":{"ieee":"M. Capelson and M. Hetzer, “The role of nuclear pores in gene regulation, development and disease,” <i>EMBO reports</i>, vol. 10, no. 7. EMBO, pp. 697–705, 2009.","mla":"Capelson, Maya, and Martin Hetzer. “The Role of Nuclear Pores in Gene Regulation, Development and Disease.” <i>EMBO Reports</i>, vol. 10, no. 7, EMBO, 2009, pp. 697–705, doi:<a href=\"https://doi.org/10.1038/embor.2009.147\">10.1038/embor.2009.147</a>.","short":"M. Capelson, M. Hetzer, EMBO Reports 10 (2009) 697–705.","ama":"Capelson M, Hetzer M. The role of nuclear pores in gene regulation, development and disease. <i>EMBO reports</i>. 2009;10(7):697-705. doi:<a href=\"https://doi.org/10.1038/embor.2009.147\">10.1038/embor.2009.147</a>","apa":"Capelson, M., &#38; Hetzer, M. (2009). The role of nuclear pores in gene regulation, development and disease. <i>EMBO Reports</i>. EMBO. <a href=\"https://doi.org/10.1038/embor.2009.147\">https://doi.org/10.1038/embor.2009.147</a>","chicago":"Capelson, Maya, and Martin Hetzer. “The Role of Nuclear Pores in Gene Regulation, Development and Disease.” <i>EMBO Reports</i>. EMBO, 2009. <a href=\"https://doi.org/10.1038/embor.2009.147\">https://doi.org/10.1038/embor.2009.147</a>.","ista":"Capelson M, Hetzer M. 2009. The role of nuclear pores in gene regulation, development and disease. EMBO reports. 10(7), 697–705."},"issue":"7","date_published":"2009-07-01T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.1038/embor.2009.147","open_access":"1"}],"date_updated":"2022-07-18T08:42:44Z","title":"The role of nuclear pores in gene regulation, development and disease","abstract":[{"lang":"eng","text":"Nuclear-pore complexes (NPCs) are large protein channels that span the nuclear envelope (NE), which is a double membrane that encloses the nuclear genome of eukaryotes. Each of the typically 2,000–4,000 pores in the NE of vertebrate cells is composed of multiple copies of 30 different proteins known as nucleoporins. The evolutionarily conserved NPC proteins have the well-characterized function of mediating the transport of molecules between the nucleoplasm and the cytoplasm. Mutations in nucleoporins are often linked to specific developmental defects and disease, and the resulting phenotypes are usually interpreted as the consequences of perturbed nuclear transport activity. However, recent evidence suggests that NPCs have additional functions in chromatin organization and gene regulation, some of which might be independent of nuclear transport. Here, we review the transport-dependent and transport-independent roles of NPCs in the regulation of nuclear function and gene expression."}]},{"_id":"11106","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","extern":"1","pmid":1,"publisher":"Rockefeller University Press","doi":"10.1083/jcb.200901106","publication_status":"published","author":[{"first_name":"Daniel J.","last_name":"Anderson","full_name":"Anderson, Daniel J."},{"full_name":"Vargas, Jesse D.","first_name":"Jesse D.","last_name":"Vargas"},{"full_name":"Hsiao, Joshua P.","first_name":"Joshua P.","last_name":"Hsiao"},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","last_name":"HETZER","first_name":"Martin W"}],"keyword":["Cell Biology"],"oa_version":"Published Version","citation":{"ista":"Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. 2009. Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo. Journal of Cell Biology. 186(2), 183–191.","chicago":"Anderson, Daniel J., Jesse D. Vargas, Joshua P. Hsiao, and Martin Hetzer. “Recruitment of Functionally Distinct Membrane Proteins to Chromatin Mediates Nuclear Envelope Formation in Vivo.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2009. <a href=\"https://doi.org/10.1083/jcb.200901106\">https://doi.org/10.1083/jcb.200901106</a>.","ama":"Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo. <i>Journal of Cell Biology</i>. 2009;186(2):183-191. doi:<a href=\"https://doi.org/10.1083/jcb.200901106\">10.1083/jcb.200901106</a>","apa":"Anderson, D. J., Vargas, J. D., Hsiao, J. P., &#38; Hetzer, M. (2009). Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.200901106\">https://doi.org/10.1083/jcb.200901106</a>","short":"D.J. Anderson, J.D. Vargas, J.P. Hsiao, M. Hetzer, Journal of Cell Biology 186 (2009) 183–191.","mla":"Anderson, Daniel J., et al. “Recruitment of Functionally Distinct Membrane Proteins to Chromatin Mediates Nuclear Envelope Formation in Vivo.” <i>Journal of Cell Biology</i>, vol. 186, no. 2, Rockefeller University Press, 2009, pp. 183–91, doi:<a href=\"https://doi.org/10.1083/jcb.200901106\">10.1083/jcb.200901106</a>.","ieee":"D. J. Anderson, J. D. Vargas, J. P. Hsiao, and M. Hetzer, “Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo,” <i>Journal of Cell Biology</i>, vol. 186, no. 2. Rockefeller University Press, pp. 183–191, 2009."},"publication_identifier":{"eissn":["1540-8140"],"issn":["0021-9525"]},"type":"journal_article","year":"2009","volume":186,"scopus_import":"1","title":"Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo","abstract":[{"text":"Formation of the nuclear envelope (NE) around segregated chromosomes occurs by the reshaping of the endoplasmic reticulum (ER), a reservoir for disassembled nuclear membrane components during mitosis. In this study, we show that inner nuclear membrane proteins such as lamin B receptor (LBR), MAN1, Lap2β, and the trans-membrane nucleoporins Ndc1 and POM121 drive the spreading of ER membranes into the emerging NE via their capacity to bind chromatin in a collaborative manner. Despite their redundant functions, decreasing the levels of any of these trans-membrane proteins by RNAi-mediated knockdown delayed NE formation, whereas increasing the levels of any of them had the opposite effect. Furthermore, acceleration of NE formation interferes with chromosome separation during mitosis, indicating that the time frame over which chromatin becomes membrane enclosed is physiologically relevant and regulated. These data suggest that functionally distinct classes of chromatin-interacting membrane proteins, which are present at nonsaturating levels, collaborate to rapidly reestablish the nuclear compartment at the end of mitosis.","lang":"eng"}],"issue":"2","date_published":"2009-07-20T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.1083/jcb.200901106","open_access":"1"}],"date_updated":"2022-07-18T08:58:35Z","quality_controlled":"1","article_processing_charge":"No","intvolume":"       186","external_id":{"pmid":["19620630"]},"oa":1,"language":[{"iso":"eng"}],"month":"07","article_type":"original","page":"183-191","publication":"Journal of Cell Biology","related_material":{"link":[{"url":"https://doi.org/10.1083/jcb.20090110620090903c","relation":"erratum"}]},"day":"20","date_created":"2022-04-07T07:54:18Z","status":"public"},{"external_id":{"pmid":["19273614"]},"oa":1,"article_processing_charge":"No","quality_controlled":"1","intvolume":"       184","page":"659-675","publication":"Journal of Cell Biology","day":"09","date_created":"2022-04-07T07:54:44Z","status":"public","language":[{"iso":"eng"}],"month":"03","article_type":"original","publisher":"Rockefeller University Press","doi":"10.1083/jcb.200806174","author":[{"first_name":"T. Renee","last_name":"Dawson","full_name":"Dawson, T. Renee"},{"full_name":"Lazarus, Michelle D.","first_name":"Michelle D.","last_name":"Lazarus"},{"first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"},{"full_name":"Wente, Susan R.","first_name":"Susan R.","last_name":"Wente"}],"publication_status":"published","_id":"11107","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","extern":"1","pmid":1,"title":"ER membrane–bending proteins are necessary for de novo nuclear pore formation","abstract":[{"lang":"eng","text":"Nucleocytoplasmic transport occurs exclusively through nuclear pore complexes (NPCs) embedded in pores formed by inner and outer nuclear membrane fusion. The mechanism for de novo pore and NPC biogenesis remains unclear. Reticulons (RTNs) and Yop1/DP1 are conserved membrane protein families required to form and maintain the tubular endoplasmic reticulum (ER) and the postmitotic nuclear envelope. In this study, we report that members of the RTN and Yop1/DP1 families are required for nuclear pore formation. Analysis of Saccharomyces cerevisiae prp20-G282S and nup133Δ NPC assembly mutants revealed perturbations in Rtn1–green fluorescent protein (GFP) and Yop1-GFP ER distribution and colocalization to NPC clusters. Combined deletion of RTN1 and YOP1 resulted in NPC clustering, nuclear import defects, and synthetic lethality with the additional absence of Pom34, Pom152, and Nup84 subcomplex members. We tested for a direct role in NPC biogenesis using Xenopus laevis in vitro assays and found that anti-Rtn4a antibodies specifically inhibited de novo nuclear pore formation. We hypothesize that these ER membrane–bending proteins mediate early NPC assembly steps."}],"issue":"5","date_published":"2009-03-09T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1083/jcb.200806174"}],"date_updated":"2022-07-18T08:55:05Z","keyword":["Cell Biology"],"oa_version":"Published Version","citation":{"ista":"Dawson TR, Lazarus MD, Hetzer M, Wente SR. 2009. ER membrane–bending proteins are necessary for de novo nuclear pore formation. Journal of Cell Biology. 184(5), 659–675.","chicago":"Dawson, T. Renee, Michelle D. Lazarus, Martin Hetzer, and Susan R. Wente. “ER Membrane–Bending Proteins Are Necessary for de Novo Nuclear Pore Formation.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2009. <a href=\"https://doi.org/10.1083/jcb.200806174\">https://doi.org/10.1083/jcb.200806174</a>.","apa":"Dawson, T. R., Lazarus, M. D., Hetzer, M., &#38; Wente, S. R. (2009). ER membrane–bending proteins are necessary for de novo nuclear pore formation. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.200806174\">https://doi.org/10.1083/jcb.200806174</a>","ama":"Dawson TR, Lazarus MD, Hetzer M, Wente SR. ER membrane–bending proteins are necessary for de novo nuclear pore formation. <i>Journal of Cell Biology</i>. 2009;184(5):659-675. doi:<a href=\"https://doi.org/10.1083/jcb.200806174\">10.1083/jcb.200806174</a>","mla":"Dawson, T. Renee, et al. “ER Membrane–Bending Proteins Are Necessary for de Novo Nuclear Pore Formation.” <i>Journal of Cell Biology</i>, vol. 184, no. 5, Rockefeller University Press, 2009, pp. 659–75, doi:<a href=\"https://doi.org/10.1083/jcb.200806174\">10.1083/jcb.200806174</a>.","ieee":"T. R. Dawson, M. D. Lazarus, M. Hetzer, and S. R. Wente, “ER membrane–bending proteins are necessary for de novo nuclear pore formation,” <i>Journal of Cell Biology</i>, vol. 184, no. 5. Rockefeller University Press, pp. 659–675, 2009.","short":"T.R. Dawson, M.D. Lazarus, M. Hetzer, S.R. Wente, Journal of Cell Biology 184 (2009) 659–675."},"publication_identifier":{"issn":["0021-9525"],"eissn":["1540-8140"]},"type":"journal_article","volume":184,"year":"2009","scopus_import":"1"},{"language":[{"iso":"eng"}],"article_type":"original","month":"01","day":"23","publication":"Cell","page":"284-295","status":"public","date_created":"2022-04-07T07:54:52Z","intvolume":"       136","article_processing_charge":"No","quality_controlled":"1","external_id":{"pmid":["19167330"]},"oa":1,"citation":{"ista":"D’Angelo MA, Raices M, Panowski SH, Hetzer M. 2009. Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells. Cell. 136(2), 284–295.","chicago":"D’Angelo, Maximiliano A., Marcela Raices, Siler H. Panowski, and Martin Hetzer. “Age-Dependent Deterioration of Nuclear Pore Complexes Causes a Loss of Nuclear Integrity in Postmitotic Cells.” <i>Cell</i>. Elsevier, 2009. <a href=\"https://doi.org/10.1016/j.cell.2008.11.037\">https://doi.org/10.1016/j.cell.2008.11.037</a>.","apa":"D’Angelo, M. A., Raices, M., Panowski, S. H., &#38; Hetzer, M. (2009). Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells. <i>Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cell.2008.11.037\">https://doi.org/10.1016/j.cell.2008.11.037</a>","ama":"D’Angelo MA, Raices M, Panowski SH, Hetzer M. Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells. <i>Cell</i>. 2009;136(2):284-295. doi:<a href=\"https://doi.org/10.1016/j.cell.2008.11.037\">10.1016/j.cell.2008.11.037</a>","short":"M.A. D’Angelo, M. Raices, S.H. Panowski, M. Hetzer, Cell 136 (2009) 284–295.","mla":"D’Angelo, Maximiliano A., et al. “Age-Dependent Deterioration of Nuclear Pore Complexes Causes a Loss of Nuclear Integrity in Postmitotic Cells.” <i>Cell</i>, vol. 136, no. 2, Elsevier, 2009, pp. 284–95, doi:<a href=\"https://doi.org/10.1016/j.cell.2008.11.037\">10.1016/j.cell.2008.11.037</a>.","ieee":"M. A. D’Angelo, M. Raices, S. H. Panowski, and M. Hetzer, “Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells,” <i>Cell</i>, vol. 136, no. 2. Elsevier, pp. 284–295, 2009."},"oa_version":"Published Version","keyword":["General Biochemistry","Genetics and Molecular Biology"],"scopus_import":"1","volume":136,"year":"2009","type":"journal_article","publication_identifier":{"issn":["0092-8674"]},"abstract":[{"text":"In dividing cells, nuclear pore complexes (NPCs) disassemble during mitosis and reassemble into the newly forming nuclei. However, the fate of nuclear pores in postmitotic cells is unknown. Here, we show that NPCs, unlike other nuclear structures, do not turn over in differentiated cells. While a subset of NPC components, like Nup153 and Nup50, are continuously exchanged, scaffold nucleoporins, like the Nup107/160 complex, are extremely long-lived and remain incorporated in the nuclear membrane during the entire cellular life span. Besides the lack of nucleoporin expression and NPC turnover, we discovered an age-related deterioration of NPCs, leading to an increase in nuclear permeability and the leaking of cytoplasmic proteins into the nucleus. Our finding that nuclear “leakiness” is dramatically accelerated during aging and that a subset of nucleoporins is oxidatively damaged in old cells suggests that the accumulation of damage at the NPC might be a crucial aging event.","lang":"eng"}],"title":"Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells","date_updated":"2022-07-18T08:55:29Z","date_published":"2009-01-23T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.cell.2008.11.037"}],"issue":"2","extern":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11108","pmid":1,"doi":"10.1016/j.cell.2008.11.037","publisher":"Elsevier","publication_status":"published","author":[{"last_name":"D'Angelo","first_name":"Maximiliano A.","full_name":"D'Angelo, Maximiliano A."},{"last_name":"Raices","first_name":"Marcela","full_name":"Raices, Marcela"},{"full_name":"Panowski, Siler H.","last_name":"Panowski","first_name":"Siler H."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","last_name":"HETZER","first_name":"Martin W"}]},{"issue":"3","date_published":"2009-07-01T00:00:00Z","date_updated":"2023-02-23T12:58:33Z","article_number":"032062","title":"Influence of magnetic fields on structural martensitic transitions","abstract":[{"text":"We propose a model which suggests that structural martensitic transitions are related to significant changes in the electronic structure, and are effected by high-magnetic fields. The magnetic field dependence is considered unusual as many influential investigations of martensitic transitions have emphasized that the structural transitions are primarily lattice dynamical and are driven by the entropy due to the phonons. We provide a theoretical framework which can be used to describe the effect of high magnetic field on the transition and lattice dynamics in which the field dependence originates from the dielectric constant. The model is compared with some recent experimental results.","lang":"eng"}],"publication_identifier":{"eissn":["1742-6596"],"issn":["1742-6588"]},"type":"conference","year":"2009","volume":200,"scopus_import":"1","citation":{"ista":"Yang X, Riseborough PS, Modic KA, Fisher RA, Oppeil CP, Finlayson TR, Cooley JC, Smith JL, Goddard PA, Silhanek AV, Lashley JC. 2009. Influence of magnetic fields on structural martensitic transitions. Journal of Physics: Conference Series. ICM: International Conference on Magnetism, JPCS, vol. 200, 032062.","chicago":"Yang, Xiaodong, Peter S Riseborough, Kimberly A Modic, R A Fisher, C P Oppeil, T R Finlayson, J C Cooley, et al. “Influence of Magnetic Fields on Structural Martensitic Transitions.” In <i>Journal of Physics: Conference Series</i>, Vol. 200. IOP Publishing, 2009. <a href=\"https://doi.org/10.1088/1742-6596/200/3/032062\">https://doi.org/10.1088/1742-6596/200/3/032062</a>.","ama":"Yang X, Riseborough PS, Modic KA, et al. Influence of magnetic fields on structural martensitic transitions. In: <i>Journal of Physics: Conference Series</i>. Vol 200. IOP Publishing; 2009. doi:<a href=\"https://doi.org/10.1088/1742-6596/200/3/032062\">10.1088/1742-6596/200/3/032062</a>","apa":"Yang, X., Riseborough, P. S., Modic, K. A., Fisher, R. A., Oppeil, C. P., Finlayson, T. R., … Lashley, J. C. (2009). Influence of magnetic fields on structural martensitic transitions. In <i>Journal of Physics: Conference Series</i> (Vol. 200). Karlsruhe, Germany: IOP Publishing. <a href=\"https://doi.org/10.1088/1742-6596/200/3/032062\">https://doi.org/10.1088/1742-6596/200/3/032062</a>","short":"X. Yang, P.S. Riseborough, K.A. Modic, R.A. Fisher, C.P. Oppeil, T.R. Finlayson, J.C. Cooley, J.L. Smith, P.A. Goddard, A.V. Silhanek, J.C. Lashley, in:, Journal of Physics: Conference Series, IOP Publishing, 2009.","mla":"Yang, Xiaodong, et al. “Influence of Magnetic Fields on Structural Martensitic Transitions.” <i>Journal of Physics: Conference Series</i>, vol. 200, no. 3, 032062, IOP Publishing, 2009, doi:<a href=\"https://doi.org/10.1088/1742-6596/200/3/032062\">10.1088/1742-6596/200/3/032062</a>.","ieee":"X. Yang <i>et al.</i>, “Influence of magnetic fields on structural martensitic transitions,” in <i>Journal of Physics: Conference Series</i>, Karlsruhe, Germany, 2009, vol. 200, no. 3."},"oa_version":"None","publication_status":"published","author":[{"full_name":"Yang, Xiaodong","last_name":"Yang","first_name":"Xiaodong"},{"first_name":"Peter S","last_name":"Riseborough","full_name":"Riseborough, Peter S"},{"last_name":"Modic","first_name":"Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147"},{"last_name":"Fisher","first_name":"R A","full_name":"Fisher, R A"},{"full_name":"Oppeil, C P","last_name":"Oppeil","first_name":"C P"},{"last_name":"Finlayson","first_name":"T R","full_name":"Finlayson, T R"},{"full_name":"Cooley, J C","last_name":"Cooley","first_name":"J C"},{"first_name":"J L","last_name":"Smith","full_name":"Smith, J L"},{"last_name":"Goddard","first_name":"P A","full_name":"Goddard, P A"},{"first_name":"A V","last_name":"Silhanek","full_name":"Silhanek, A V"},{"full_name":"Lashley, J C","first_name":"J C","last_name":"Lashley"}],"publisher":"IOP Publishing","alternative_title":["JPCS"],"doi":"10.1088/1742-6596/200/3/032062","_id":"11752","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","date_created":"2022-08-08T08:43:04Z","status":"public","publication":"Journal of Physics: Conference Series","conference":{"location":"Karlsruhe, Germany","start_date":"2009-07-26","end_date":"2009-07-31","name":"ICM: International Conference on Magnetism"},"related_material":{"record":[{"status":"public","id":"7080","relation":"later_version"}]},"day":"01","month":"07","language":[{"iso":"eng"}],"article_processing_charge":"No","quality_controlled":"1","intvolume":"       200"},{"alternative_title":["LNCS"],"publisher":"Springer Nature","doi":"10.1007/978-3-642-10841-9_58","publication_status":"published","author":[{"full_name":"Dütting, Paul","first_name":"Paul","last_name":"Dütting"},{"last_name":"Henzinger","first_name":"Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H"},{"last_name":"Weber","first_name":"Ingmar","full_name":"Weber, Ingmar"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11799","extern":"1","title":"Bidder optimal assignments for general utilities","abstract":[{"lang":"eng","text":"We study the problem of matching bidders to items where each bidder i has general, strictly monotonic utility functions u i,j (p j ) expressing her utility of being matched to item j at price p j . For this setting we prove that a bidder optimal outcome always exists, even when the utility functions are non-linear and non-continuous. Furthermore, we give an algorithm to find such a solution. Although the running time of this algorithm is exponential in the number of items, it is polynomial in the number of bidders."}],"date_published":"2009-12-01T00:00:00Z","date_updated":"2023-02-21T16:32:35Z","oa_version":"None","citation":{"ista":"Dütting P, Henzinger MH, Weber I. 2009. Bidder optimal assignments for general utilities. 5th International Workshop on Internet and Network Economics. WINE: International Conference on Web and Internet Economics, LNCS, vol. 5929, 575–582.","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Bidder Optimal Assignments for General Utilities.” In <i>5th International Workshop on Internet and Network Economics</i>, 5929:575–82. Springer Nature, 2009. <a href=\"https://doi.org/10.1007/978-3-642-10841-9_58\">https://doi.org/10.1007/978-3-642-10841-9_58</a>.","apa":"Dütting, P., Henzinger, M. H., &#38; Weber, I. (2009). Bidder optimal assignments for general utilities. In <i>5th International Workshop on Internet and Network Economics</i> (Vol. 5929, pp. 575–582). Rome, Italy: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-10841-9_58\">https://doi.org/10.1007/978-3-642-10841-9_58</a>","ama":"Dütting P, Henzinger MH, Weber I. Bidder optimal assignments for general utilities. In: <i>5th International Workshop on Internet and Network Economics</i>. Vol 5929. Springer Nature; 2009:575-582. doi:<a href=\"https://doi.org/10.1007/978-3-642-10841-9_58\">10.1007/978-3-642-10841-9_58</a>","short":"P. Dütting, M.H. Henzinger, I. Weber, in:, 5th International Workshop on Internet and Network Economics, Springer Nature, 2009, pp. 575–582.","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Bidder optimal assignments for general utilities,” in <i>5th International Workshop on Internet and Network Economics</i>, Rome, Italy, 2009, vol. 5929, pp. 575–582.","mla":"Dütting, Paul, et al. “Bidder Optimal Assignments for General Utilities.” <i>5th International Workshop on Internet and Network Economics</i>, vol. 5929, Springer Nature, 2009, pp. 575–82, doi:<a href=\"https://doi.org/10.1007/978-3-642-10841-9_58\">10.1007/978-3-642-10841-9_58</a>."},"type":"conference","publication_identifier":{"issn":["1611-3349"],"isbn":["9783642108402"]},"scopus_import":"1","volume":5929,"year":"2009","article_processing_charge":"No","quality_controlled":"1","intvolume":"      5929","publication":"5th International Workshop on Internet and Network Economics","related_material":{"record":[{"status":"public","relation":"later_version","id":"11902"}]},"conference":{"location":"Rome, Italy","start_date":"2009-12-14","name":"WINE: International Conference on Web and Internet Economics","end_date":"2009-12-18"},"page":"575-582","day":"01","date_created":"2022-08-11T12:33:38Z","status":"public","language":[{"iso":"eng"}],"month":"12"},{"day":"01","abstract":[{"text":"Given only the URL of a web page, can we identify its topic? This is the question that we examine in this paper. Usually, web pages are classified using their content, but a URL-only classifier is preferable, (i) when speed is crucial, (ii) to enable content filtering before an (objection-able) web page is downloaded, (iii) when a page's content is hidden in images, (iv) to annotate hyperlinks in a personalized web browser, without fetching the target page, and (v) when a focused crawler wants to infer the topic of a target page before devoting bandwidth to download it. We apply a machine learning approach to the topic identification task and evaluate its performance in extensive experiments on categorized web pages from the Open Directory Project (ODP). When training separate binary classifiers for each topic, we achieve typical F-measure values between 80 and 85, and a typical precision of around 85. We also ran experiments on a small data set of university web pages. For the task of classifying these pages into faculty, student, course and project pages, our methods improve over previous approaches by 13.8 points of F-measure.","lang":"eng"}],"title":"Purely URL-based topic classification","conference":{"location":"New York, NY, United States","start_date":"2009-04-20","end_date":"2009-04-24","name":"WWW: Conference on World Wide Web"},"publication":"18th International World Wide Web Conference","page":"1109-1110","date_updated":"2023-02-17T14:54:56Z","status":"public","date_published":"2009-04-01T00:00:00Z","date_created":"2022-08-17T11:49:53Z","language":[{"iso":"eng"}],"citation":{"chicago":"Baykan, Eda, Monika H Henzinger, Ludmila Marian, and Ingmar Weber. “Purely URL-Based Topic Classification.” In <i>18th International World Wide Web Conference</i>, 1109–10. Association for Computing Machinery, 2009. <a href=\"https://doi.org/10.1145/1526709.1526880\">https://doi.org/10.1145/1526709.1526880</a>.","ista":"Baykan E, Henzinger MH, Marian L, Weber I. 2009. Purely URL-based topic classification. 18th International World Wide Web Conference. WWW: Conference on World Wide Web, 1109–1110.","ieee":"E. Baykan, M. H. Henzinger, L. Marian, and I. Weber, “Purely URL-based topic classification,” in <i>18th International World Wide Web Conference</i>, New York, NY, United States, 2009, pp. 1109–1110.","mla":"Baykan, Eda, et al. “Purely URL-Based Topic Classification.” <i>18th International World Wide Web Conference</i>, Association for Computing Machinery, 2009, pp. 1109–10, doi:<a href=\"https://doi.org/10.1145/1526709.1526880\">10.1145/1526709.1526880</a>.","short":"E. Baykan, M.H. Henzinger, L. Marian, I. Weber, in:, 18th International World Wide Web Conference, Association for Computing Machinery, 2009, pp. 1109–1110.","ama":"Baykan E, Henzinger MH, Marian L, Weber I. Purely URL-based topic classification. In: <i>18th International World Wide Web Conference</i>. Association for Computing Machinery; 2009:1109-1110. doi:<a href=\"https://doi.org/10.1145/1526709.1526880\">10.1145/1526709.1526880</a>","apa":"Baykan, E., Henzinger, M. H., Marian, L., &#38; Weber, I. (2009). Purely URL-based topic classification. In <i>18th International World Wide Web Conference</i> (pp. 1109–1110). New York, NY, United States: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/1526709.1526880\">https://doi.org/10.1145/1526709.1526880</a>"},"oa_version":"None","scopus_import":"1","year":"2009","type":"conference","publication_identifier":{"isbn":["978-1-60558-487-4"]},"month":"04","doi":"10.1145/1526709.1526880","publisher":"Association for Computing Machinery","author":[{"first_name":"Eda","last_name":"Baykan","full_name":"Baykan, Eda"},{"orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","first_name":"Monika H","last_name":"Henzinger"},{"last_name":"Marian","first_name":"Ludmila","full_name":"Marian, Ludmila"},{"full_name":"Weber, Ingmar","first_name":"Ingmar","last_name":"Weber"}],"publication_status":"published","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","_id":"11905","quality_controlled":"1"},{"abstract":[{"lang":"eng","text":"In the origin detection problem an algorithm is given a set S of documents, ordered by creation time, and a query document D. It needs to output for every consecutive sequence of k alphanumeric terms in D the earliest document in $S$ in which the sequence appeared (if such a document exists). Algorithms for the origin detection problem can, for example, be used to detect the \"origin\" of text segments in D and thus to detect novel content in D. They can also find the document from which the author of D has copied the most (or show that D is mostly original.) We concentrate on solutions that use only a fixed amount of memory. We propose novel algorithms for this problem and evaluate them together with a large number of previously published algorithms. Our results show that (1) detecting the origin of text segments efficiently can be done with very high accuracy even when the space used is less than 1% of the size of the documents in $S$, (2) the precision degrades smoothly with the amount of available space, (3) various estimation techniques can be used to increase the performance of the algorithms."}],"day":"01","page":"61-70","publication":"18th International World Wide Web Conference","title":"Detecting the origin of text segments efficiently","conference":{"end_date":"2009-04-24","name":"WWW: International Conference on World Wide Web","start_date":"2009-04-20","location":"Madrid, Spain"},"date_updated":"2023-02-17T14:56:47Z","status":"public","date_created":"2022-08-17T11:54:30Z","date_published":"2009-04-01T00:00:00Z","language":[{"iso":"eng"}],"citation":{"chicago":"Abdel Hamid, Ossama, Behshad Behzadi, Stefan Christoph, and Monika H Henzinger. “Detecting the Origin of Text Segments Efficiently.” In <i>18th International World Wide Web Conference</i>, 61–70. Association for Computing Machinery, 2009. <a href=\"https://doi.org/10.1145/1526709.1526719\">https://doi.org/10.1145/1526709.1526719</a>.","ista":"Abdel Hamid O, Behzadi B, Christoph S, Henzinger MH. 2009. Detecting the origin of text segments efficiently. 18th International World Wide Web Conference. WWW: International Conference on World Wide Web, 61–70.","short":"O. Abdel Hamid, B. Behzadi, S. Christoph, M.H. Henzinger, in:, 18th International World Wide Web Conference, Association for Computing Machinery, 2009, pp. 61–70.","mla":"Abdel Hamid, Ossama, et al. “Detecting the Origin of Text Segments Efficiently.” <i>18th International World Wide Web Conference</i>, Association for Computing Machinery, 2009, pp. 61–70, doi:<a href=\"https://doi.org/10.1145/1526709.1526719\">10.1145/1526709.1526719</a>.","ieee":"O. Abdel Hamid, B. Behzadi, S. Christoph, and M. H. Henzinger, “Detecting the origin of text segments efficiently,” in <i>18th International World Wide Web Conference</i>, Madrid, Spain, 2009, pp. 61–70.","apa":"Abdel Hamid, O., Behzadi, B., Christoph, S., &#38; Henzinger, M. H. (2009). Detecting the origin of text segments efficiently. In <i>18th International World Wide Web Conference</i> (pp. 61–70). Madrid, Spain: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/1526709.1526719\">https://doi.org/10.1145/1526709.1526719</a>","ama":"Abdel Hamid O, Behzadi B, Christoph S, Henzinger MH. Detecting the origin of text segments efficiently. In: <i>18th International World Wide Web Conference</i>. Association for Computing Machinery; 2009:61-70. doi:<a href=\"https://doi.org/10.1145/1526709.1526719\">10.1145/1526709.1526719</a>"},"oa_version":"None","year":"2009","scopus_import":"1","month":"04","publication_identifier":{"isbn":["978-160558487-4"]},"type":"conference","doi":"10.1145/1526709.1526719","publisher":"Association for Computing Machinery","publication_status":"published","author":[{"first_name":"Ossama","last_name":"Abdel Hamid","full_name":"Abdel Hamid, Ossama"},{"last_name":"Behzadi","first_name":"Behshad","full_name":"Behzadi, Behshad"},{"first_name":"Stefan","last_name":"Christoph","full_name":"Christoph, Stefan"},{"id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H","last_name":"Henzinger","first_name":"Monika H"}],"extern":"1","quality_controlled":"1","_id":"11906","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"day":"01","page":"13-30","publication":"26th International Symposium on Theoretical Aspects of Computer Science","conference":{"location":"Freiburg, Germany","start_date":"2009-02-26","end_date":"2009-02-28","name":"STACS: Symposium on Theoretical Aspects of Computer Science"},"status":"public","date_created":"2022-08-18T06:57:25Z","language":[{"iso":"eng"}],"month":"02","external_id":{"arxiv":["0902.1604"]},"oa":1,"intvolume":"         3","article_processing_charge":"No","quality_controlled":"1","abstract":[{"text":"As the World Wide Web is growing rapidly, it is getting increasingly challenging to gather representative information about it. Instead of crawling the web exhaustively one has to resort to other techniques like sampling to determine the properties of the web. A uniform random sample of the web would be useful to determine the percentage of web pages in a specific language, on a topic or in a top level domain. Unfortunately, no approach has been shown to sample the web pages in an unbiased way. Three promising web sampling algorithms are based on random walks. They each have been evaluated individually, but making a comparison on different data sets is not possible. We directly compare these algorithms in this paper. We performed three random walks on the web under the same conditions and analyzed their outcomes in detail. We discuss the strengths and the weaknesses of each algorithm and propose improvements based on experimental results.","lang":"eng"}],"title":"A comparison of techniques for sampling web pages","date_updated":"2023-02-17T08:57:16Z","date_published":"2009-02-01T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.4230/LIPIcs.STACS.2009.1809","open_access":"1"}],"citation":{"apa":"Baykan,  Eda, Henzinger, M. H., Keller, S. F., de Castelberg, S., &#38; Kinzler, M. (2009). A comparison of techniques for sampling web pages. In <i>26th International Symposium on Theoretical Aspects of Computer Science</i> (Vol. 3, pp. 13–30). Freiburg, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPICS.STACS.2009.1809\">https://doi.org/10.4230/LIPICS.STACS.2009.1809</a>","ama":"Baykan  Eda, Henzinger MH, Keller SF, de Castelberg S, Kinzler M. A comparison of techniques for sampling web pages. In: <i>26th International Symposium on Theoretical Aspects of Computer Science</i>. Vol 3. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2009:13-30. doi:<a href=\"https://doi.org/10.4230/LIPICS.STACS.2009.1809\">10.4230/LIPICS.STACS.2009.1809</a>","ieee":"Eda Baykan, M. H. Henzinger, S. F. Keller, S. de Castelberg, and M. Kinzler, “A comparison of techniques for sampling web pages,” in <i>26th International Symposium on Theoretical Aspects of Computer Science</i>, Freiburg, Germany, 2009, vol. 3, pp. 13–30.","mla":"Baykan,  Eda, et al. “A Comparison of Techniques for Sampling Web Pages.” <i>26th International Symposium on Theoretical Aspects of Computer Science</i>, vol. 3, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2009, pp. 13–30, doi:<a href=\"https://doi.org/10.4230/LIPICS.STACS.2009.1809\">10.4230/LIPICS.STACS.2009.1809</a>.","short":"Eda Baykan, M.H. Henzinger, S.F. Keller, S. de Castelberg, M. Kinzler, in:, 26th International Symposium on Theoretical Aspects of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2009, pp. 13–30.","ista":"Baykan  Eda, Henzinger MH, Keller SF, de Castelberg S, Kinzler M. 2009. A comparison of techniques for sampling web pages. 26th International Symposium on Theoretical Aspects of Computer Science. STACS: Symposium on Theoretical Aspects of Computer Science, LIPIcs, vol. 3, 13–30.","chicago":"Baykan,  Eda, Monika H Henzinger, Stefan F. Keller, Sebastian de Castelberg, and Markus Kinzler. “A Comparison of Techniques for Sampling Web Pages.” In <i>26th International Symposium on Theoretical Aspects of Computer Science</i>, 3:13–30. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2009. <a href=\"https://doi.org/10.4230/LIPICS.STACS.2009.1809\">https://doi.org/10.4230/LIPICS.STACS.2009.1809</a>."},"oa_version":"Published Version","year":"2009","volume":3,"scopus_import":"1","publication_identifier":{"issn":["1868-8969"],"isbn":["978-3-939897-09-5"]},"type":"conference","doi":"10.4230/LIPICS.STACS.2009.1809","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","arxiv":1,"alternative_title":["LIPIcs"],"author":[{"last_name":"Baykan","first_name":" Eda","full_name":"Baykan,  Eda"},{"id":"540c9bbd-f2de-11ec-812d-d04a5be85630","full_name":"Henzinger, Monika H","orcid":"0000-0002-5008-6530","last_name":"Henzinger","first_name":"Monika H"},{"first_name":"Stefan F.","last_name":"Keller","full_name":"Keller, Stefan F."},{"first_name":"Sebastian","last_name":"de Castelberg","full_name":"de Castelberg, Sebastian"},{"full_name":"Kinzler, Markus","last_name":"Kinzler","first_name":"Markus"}],"publication_status":"published","extern":"1","_id":"11912","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"doi":"10.1007/s10577-009-9053-y","publist_id":"4969","publisher":"Springer","publication_status":"published","author":[{"last_name":"Vicoso","first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4579-8306","full_name":"Beatriz Vicoso"},{"last_name":"Bachtrog","first_name":"Doris","full_name":"Bachtrog, Doris"}],"intvolume":"        17","extern":1,"acknowledgement":"This research is funded by NIH Grant GM076007 and a Sloan Research Fellowship and a David and Lucile Packard Fellowship to D.B.","_id":"2070","quality_controlled":0,"day":"01","abstract":[{"text":"In many eukaryotic organisms, gender is determined by a pair of heteromorphic sex chromosomes. Degeneration of the non-recombining Y chromosome is a general facet of sex chromosome evolution. Selective pressure to restore expression levels of X-linked genes relative to autosomes accompanies Y-chromosome degeneration, thus driving the evolution of dosage compensation mechanisms. This review focuses on evolutionary aspects of dosage compensation, in light of recent advances in comparative and functional genomics that have substantially increased our understanding of the molecular mechanisms of dosage compensation and how it evolved. We review processes involved in sex chromosome evolution, and discuss the dynamic interaction between Y degeneration and the acquisition of dosage compensation. We compare mechanisms of dosage compensation and the origin of dosage compensation genes between different taxa and comment on sex chromosomes that apparently lack compensation mechanisms. Finally, we discuss how dosage compensation systems can also influence the evolution of well-established sex chromosomes.","lang":"eng"}],"publication":"Chromosome Research","title":"Progress and prospects toward our understanding of the evolution of dosage compensation","page":"585 - 602","date_updated":"2021-01-12T06:55:07Z","status":"public","date_published":"2009-07-01T00:00:00Z","date_created":"2018-12-11T11:55:32Z","issue":"5","citation":{"apa":"Vicoso, B., &#38; Bachtrog, D. (2009). Progress and prospects toward our understanding of the evolution of dosage compensation. <i>Chromosome Research</i>. Springer. <a href=\"https://doi.org/10.1007/s10577-009-9053-y\">https://doi.org/10.1007/s10577-009-9053-y</a>","ama":"Vicoso B, Bachtrog D. Progress and prospects toward our understanding of the evolution of dosage compensation. <i>Chromosome Research</i>. 2009;17(5):585-602. doi:<a href=\"https://doi.org/10.1007/s10577-009-9053-y\">10.1007/s10577-009-9053-y</a>","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>, vol. 17, no. 5, Springer, 2009, pp. 585–602, doi:<a href=\"https://doi.org/10.1007/s10577-009-9053-y\">10.1007/s10577-009-9053-y</a>.","ieee":"B. Vicoso and D. Bachtrog, “Progress and prospects toward our understanding of the evolution of dosage compensation,” <i>Chromosome Research</i>, vol. 17, no. 5. Springer, pp. 585–602, 2009.","short":"B. Vicoso, D. Bachtrog, Chromosome Research 17 (2009) 585–602.","ista":"Vicoso B, Bachtrog D. 2009. Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Research. 17(5), 585–602.","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>. Springer, 2009. <a href=\"https://doi.org/10.1007/s10577-009-9053-y\">https://doi.org/10.1007/s10577-009-9053-y</a>."},"volume":17,"year":"2009","type":"journal_article","month":"07"},{"conference":{"name":"ACM SIGGRAPH"},"title":"Capture and modeling of non-linear heterogeneous soft tissue","abstract":[{"lang":"eng","text":"This paper introduces a data-driven representation and modeling technique for simulating non-linear heterogeneous soft tissue. It simplifies the construction of convincing deformable models by avoiding complex selection and tuning of physical material parameters, yet retaining the richness of non-linear heterogeneous behavior. We acquire a set of example deformations of a real object, and represent each of them as a spatially varying stress-strain relationship in a finite-element model. We then model the material by non-linear interpolation of these stress-strain relationships in strain-space. Our method relies on a simple-to-build capture system and an efficient run-time simulation algorithm based on incremental loading, making it suitable for interactive computer graphics applications. We present the results of our approach for several non-linear materials and biological soft tissue, with accurate agreement of our model to the measured data. "}],"day":"27","date_created":"2018-12-11T11:55:40Z","issue":"3","date_published":"2009-07-27T00:00:00Z","date_updated":"2019-04-26T07:22:08Z","status":"public","citation":{"apa":"Bickel, B., Bac̈Her, M., Otaduy, M., Matusik, W., Pfister, H., &#38; Groß, M. (2009). Capture and modeling of non-linear heterogeneous soft tissue (Vol. 28). Presented at the ACM SIGGRAPH, ACM. <a href=\"https://doi.org/10.1145/1576246.1531395 \">https://doi.org/10.1145/1576246.1531395 </a>","ama":"Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. Capture and modeling of non-linear heterogeneous soft tissue. In: Vol 28. ACM; 2009. doi:<a href=\"https://doi.org/10.1145/1576246.1531395 \">10.1145/1576246.1531395 </a>","mla":"Bickel, Bernd, et al. <i>Capture and Modeling of Non-Linear Heterogeneous Soft Tissue</i>. Vol. 28, no. 3, ACM, 2009, doi:<a href=\"https://doi.org/10.1145/1576246.1531395 \">10.1145/1576246.1531395 </a>.","ieee":"B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, and M. Groß, “Capture and modeling of non-linear heterogeneous soft tissue,” presented at the ACM SIGGRAPH, 2009, vol. 28, no. 3.","short":"B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, M. Groß, in:, ACM, 2009.","ista":"Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. 2009. Capture and modeling of non-linear heterogeneous soft tissue. ACM SIGGRAPH vol. 28.","chicago":"Bickel, Bernd, Moritz Bac̈Her, Miguel Otaduy, Wojciech Matusik, Hanspeter Pfister, and Markus Groß. “Capture and Modeling of Non-Linear Heterogeneous Soft Tissue,” Vol. 28. ACM, 2009. <a href=\"https://doi.org/10.1145/1576246.1531395 \">https://doi.org/10.1145/1576246.1531395 </a>."},"month":"07","type":"conference","volume":28,"year":"2009","publisher":"ACM","publist_id":"4940","doi":"10.1145/1576246.1531395 ","author":[{"first_name":"Bernd","last_name":"Bickel","full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Moritz","last_name":"Bac̈Her","full_name":"Bac̈her, Moritz"},{"full_name":"Otaduy, Miguel A","last_name":"Otaduy","first_name":"Miguel"},{"full_name":"Matusik, Wojciech","first_name":"Wojciech","last_name":"Matusik"},{"last_name":"Pfister","first_name":"Hanspeter","full_name":"Pfister, Hanspeter"},{"full_name":"Groß, Markus S","last_name":"Groß","first_name":"Markus"}],"publication_status":"published","quality_controlled":0,"_id":"2094","acknowledgement":"This research was supported by the NCCR Co-Me grant of the Swiss National Science Foundation. Moritz Bacher was partially supported by the Initiative in Innovative Computing (IIC) and the School of Engineering and Applied Sciences (SEAS) at Harvard. ","extern":1,"intvolume":"        28"},{"publisher":"Academic Press","publist_id":"4913","doi":"10.1016/j.jfa.2009.07.001","author":[{"first_name":"Jan","last_name":"Maas","orcid":"0000-0002-0845-1338","full_name":"Jan Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87"},{"full_name":"van Neerven, Jan M","first_name":"Jan","last_name":"Van Neerven"}],"publication_status":"published","oa":1,"quality_controlled":0,"_id":"2119","extern":1,"intvolume":"       257","page":"2410 - 2475","publication":"Journal of Functional Analysis","title":"Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces","abstract":[{"text":"Let (E, H, μ) be an abstract Wiener space and let DV : = V D, where D denotes the Malliavin derivative and V is a closed and densely defined operator from H into another Hilbert space under(H, {combining low line}). Given a bounded operator B on under(H, {combining low line}), coercive on the range over(R (V), -), we consider the operators A : = V* B V in H and under(A, {combining low line}) : = V V* B in under(H, {combining low line}), as well as the realisations of the operators L : = DV* B DV and under(L, {combining low line}) : = DV DV* B in Lp (E, μ) and Lp (E, μ ; under(H, {combining low line})) respectively, where 1 &lt; p &lt; ∞. Our main result asserts that the following four assertions are equivalent: (1)D (sqrt(L)) = D (DV) with {norm of matrix} sqrt(L) f {norm of matrix}p {minus tilde} {norm of matrix} DV f {norm of matrix}p for f ∈ D (sqrt(L));(2)under(L, {combining low line}) admits a bounded H∞-functional calculus on over(R (DV), -);(3)D (sqrt(A)) = D (V) with {norm of matrix} sqrt(A) h {norm of matrix} {minus tilde} {norm of matrix} V h {norm of matrix} for h ∈ D (sqrt(A));(4)under(A, {combining low line}) admits a bounded H∞-functional calculus on over(R (V), -). Moreover, if these conditions are satisfied, then D (L) = D (DV2) ∩ D (DA). The equivalence (1)-(4) is a non-symmetric generalisation of the classical Meyer inequalities of Malliavin calculus (where under(H, {combining low line}) = H, V = I, B = frac(1, 2) I). A one-sided version of (1)-(4), giving Lp-boundedness of the Riesz transform DV / sqrt(L) in terms of a square function estimate, is also obtained. As an application let -A generate an analytic C0-contraction semigroup on a Hilbert space H and let -L be the Lp-realisation of the generator of its second quantisation. Our results imply that two-sided bounds for the Riesz transform of L are equivalent with the Kato square root property for A. The boundedness of the Riesz transform is used to obtain an Lp-domain characterisation for the operator L.","lang":"eng"}],"day":"15","date_created":"2018-12-11T11:55:49Z","issue":"8","date_published":"2009-10-15T00:00:00Z","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0804.1432"}],"date_updated":"2021-01-12T06:55:25Z","status":"public","citation":{"ama":"Maas J, Van Neerven J. Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces. <i>Journal of Functional Analysis</i>. 2009;257(8):2410-2475. doi:<a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">10.1016/j.jfa.2009.07.001</a>","apa":"Maas, J., &#38; Van Neerven, J. (2009). Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces. <i>Journal of Functional Analysis</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">https://doi.org/10.1016/j.jfa.2009.07.001</a>","short":"J. Maas, J. Van Neerven, Journal of Functional Analysis 257 (2009) 2410–2475.","ieee":"J. Maas and J. Van Neerven, “Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces,” <i>Journal of Functional Analysis</i>, vol. 257, no. 8. Academic Press, pp. 2410–2475, 2009.","mla":"Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>, vol. 257, no. 8, Academic Press, 2009, pp. 2410–75, doi:<a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">10.1016/j.jfa.2009.07.001</a>.","ista":"Maas J, Van Neerven J. 2009. Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces. Journal of Functional Analysis. 257(8), 2410–2475.","chicago":"Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>. Academic Press, 2009. <a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">https://doi.org/10.1016/j.jfa.2009.07.001</a>."},"month":"10","type":"journal_article","year":"2009","volume":257},{"publisher":"Springer","publist_id":"4898","doi":"10.1134/S106378340907018X","author":[{"first_name":"Rostislav","last_name":"Vedrinskiǐ","full_name":"Vedrinskiǐ, Rostislav V"},{"full_name":"Kraǐzman, V. L","first_name":"V.","last_name":"Kraǐzman"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Mikhail Lemeshko","orcid":"0000-0002-6990-7802","last_name":"Lemeshko","first_name":"Mikhail"},{"first_name":"Elena","last_name":"Nazarenko","full_name":"Nazarenko, Elena S"},{"full_name":"Novakovich, Alexander A","first_name":"Alexander","last_name":"Novakovich"},{"first_name":"Larisa","last_name":"Reznichenko","full_name":"Reznichenko, Larisa A"},{"last_name":"Fokin","first_name":"Vladimir","full_name":"Fokin, Vladimir N"},{"first_name":"Victoria","last_name":"Shuvaeva","full_name":"Shuvaeva, Victoria A"}],"publication_status":"published","_id":"2136","quality_controlled":0,"acknowledgement":"This study was supported by the Russian Founda*tion for Basic Research (project no. 07*02*00796a).","extern":1,"intvolume":"        51","page":"1394 - 1398","title":"Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data","conference":{"name":"CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII)"},"abstract":[{"text":"The local atomic structure of PbTiO3, BaTiO3, and KNbO3 perovskite-type crystals and K x Na1 − x NbO3 solid solutions in different phases is investigated using the angular dependence of the pre-edge structure of the Ti and Nb K X-ray absorption spectra and the EXAFS data. In noncubic phases, a considerable deviation of the local structure from the structure determined from diffraction data is observed only for the tetragonal phase of the BaTiO3 crystal. It is revealed that, in the cubic phase of niobates, the niobium atoms are characterized by significant displacements from the centrosymmetric positions along the threefold axes, so that they are close in the magnitude and the direction to the displacements in the low-temperatures rhombohedral phases.","lang":"eng"}],"day":"12","issue":"7","date_created":"2018-12-11T11:55:55Z","date_published":"2009-07-12T00:00:00Z","date_updated":"2021-01-12T06:55:31Z","status":"public","citation":{"ista":"Vedrinskiǐ R, Kraǐzman V, Lemeshko M, Nazarenko E, Novakovich A, Reznichenko L, Fokin V, Shuvaeva V. 2009. Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data. CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII) vol. 51, 1394–1398.","chicago":"Vedrinskiǐ, Rostislav, V. Kraǐzman, Mikhail Lemeshko, Elena Nazarenko, Alexander Novakovich, Larisa Reznichenko, Vladimir Fokin, and Victoria Shuvaeva. “Local Atomic Structure of Niobates and Titanates from X-Ray Absorption Spectroscopic Data,” 51:1394–98. Springer, 2009. <a href=\"https://doi.org/10.1134/S106378340907018X\">https://doi.org/10.1134/S106378340907018X</a>.","ama":"Vedrinskiǐ R, Kraǐzman V, Lemeshko M, et al. Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data. In: Vol 51. Springer; 2009:1394-1398. doi:<a href=\"https://doi.org/10.1134/S106378340907018X\">10.1134/S106378340907018X</a>","apa":"Vedrinskiǐ, R., Kraǐzman, V., Lemeshko, M., Nazarenko, E., Novakovich, A., Reznichenko, L., … Shuvaeva, V. (2009). Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data (Vol. 51, pp. 1394–1398). Presented at the CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII), Springer. <a href=\"https://doi.org/10.1134/S106378340907018X\">https://doi.org/10.1134/S106378340907018X</a>","ieee":"R. Vedrinskiǐ <i>et al.</i>, “Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data,” presented at the CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII), 2009, vol. 51, no. 7, pp. 1394–1398.","mla":"Vedrinskiǐ, Rostislav, et al. <i>Local Atomic Structure of Niobates and Titanates from X-Ray Absorption Spectroscopic Data</i>. Vol. 51, no. 7, Springer, 2009, pp. 1394–98, doi:<a href=\"https://doi.org/10.1134/S106378340907018X\">10.1134/S106378340907018X</a>.","short":"R. Vedrinskiǐ, V. Kraǐzman, M. Lemeshko, E. Nazarenko, A. Novakovich, L. Reznichenko, V. Fokin, V. Shuvaeva, in:, Springer, 2009, pp. 1394–1398."},"month":"07","type":"conference","year":"2009","volume":51}]