[{"status":"public","type":"journal_article","day":"23","extern":"1","abstract":[{"text":"Side-chain poly[2]catenanes at the click of a switch! A bistable side-chain poly[2]catenane has been synthesized and found to form hierarchical self-assembled hollow superstructures of nanoscale dimensions in solution. Molecular electromechanical switching (see picture) of the material is demonstrated, and the ground-state equilibrium thermodynamics and switching kinetics are examined as the initial steps towards processible molecular-based electronic devices and nanoelectromechanical systems.","lang":"eng"}],"publisher":"Wiley","quality_controlled":"1","external_id":{"pmid":["19180620"]},"date_created":"2023-08-01T10:30:30Z","year":"2009","language":[{"iso":"eng"}],"volume":48,"publication_identifier":{"eissn":["1521-3773"],"issn":["1433-7851"]},"page":"1792-1797","pmid":1,"month":"02","article_type":"original","scopus_import":"1","oa_version":"None","date_published":"2009-02-23T00:00:00Z","author":[{"last_name":"Olson","full_name":"Olson, Mark A.","first_name":"Mark A."},{"first_name":"Adam B.","full_name":"Braunschweig, Adam B.","last_name":"Braunschweig"},{"full_name":"Fang, Lei","first_name":"Lei","last_name":"Fang"},{"full_name":"Ikeda, Taichi","first_name":"Taichi","last_name":"Ikeda"},{"last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","first_name":"Rafal"},{"full_name":"Trabolsi, Ali","first_name":"Ali","last_name":"Trabolsi"},{"full_name":"Wesson, Paul J.","first_name":"Paul J.","last_name":"Wesson"},{"last_name":"Benítez","full_name":"Benítez, Diego","first_name":"Diego"},{"last_name":"Mirkin","full_name":"Mirkin, Chad A.","first_name":"Chad A."},{"full_name":"Grzybowski, Bartosz A.","first_name":"Bartosz A.","last_name":"Grzybowski"},{"last_name":"Stoddart","full_name":"Stoddart, J. Fraser","first_name":"J. Fraser"}],"issue":"10","intvolume":"        48","date_updated":"2023-08-08T11:12:29Z","citation":{"chicago":"Olson, Mark A., Adam B. Braunschweig, Lei Fang, Taichi Ikeda, Rafal Klajn, Ali Trabolsi, Paul J. Wesson, et al. “A Bistable Poly[2]Catenane Forms Nanosuperstructures.” <i>Angewandte Chemie International Edition</i>. Wiley, 2009. <a href=\"https://doi.org/10.1002/anie.200804558\">https://doi.org/10.1002/anie.200804558</a>.","ama":"Olson MA, Braunschweig AB, Fang L, et al. A bistable poly[2]catenane forms nanosuperstructures. <i>Angewandte Chemie International Edition</i>. 2009;48(10):1792-1797. doi:<a href=\"https://doi.org/10.1002/anie.200804558\">10.1002/anie.200804558</a>","ieee":"M. A. Olson <i>et al.</i>, “A bistable poly[2]catenane forms nanosuperstructures,” <i>Angewandte Chemie International Edition</i>, vol. 48, no. 10. Wiley, pp. 1792–1797, 2009.","short":"M.A. Olson, A.B. Braunschweig, L. Fang, T. Ikeda, R. Klajn, A. Trabolsi, P.J. Wesson, D. Benítez, C.A. Mirkin, B.A. Grzybowski, J.F. Stoddart, Angewandte Chemie International Edition 48 (2009) 1792–1797.","ista":"Olson MA, Braunschweig AB, Fang L, Ikeda T, Klajn R, Trabolsi A, Wesson PJ, Benítez D, Mirkin CA, Grzybowski BA, Stoddart JF. 2009. A bistable poly[2]catenane forms nanosuperstructures. Angewandte Chemie International Edition. 48(10), 1792–1797.","mla":"Olson, Mark A., et al. “A Bistable Poly[2]Catenane Forms Nanosuperstructures.” <i>Angewandte Chemie International Edition</i>, vol. 48, no. 10, Wiley, 2009, pp. 1792–97, doi:<a href=\"https://doi.org/10.1002/anie.200804558\">10.1002/anie.200804558</a>.","apa":"Olson, M. A., Braunschweig, A. B., Fang, L., Ikeda, T., Klajn, R., Trabolsi, A., … Stoddart, J. F. (2009). A bistable poly[2]catenane forms nanosuperstructures. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.200804558\">https://doi.org/10.1002/anie.200804558</a>"},"publication_status":"published","doi":"10.1002/anie.200804558","_id":"13421","title":"A bistable poly[2]catenane forms nanosuperstructures","article_processing_charge":"No","publication":"Angewandte Chemie International Edition","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["General Chemistry","Catalysis"]},{"abstract":[{"text":"We consider probabilistic automata on infinite words with acceptance defined by safety, reachability, Büchi, coBüchi and limit-average conditions. We consider quantitative and qualitative decision problems. We present extensions and adaptations of proofs of [GO09] and present a precise characterization of the decidability and undecidability frontier of the quantitative and qualitative decision problems.","lang":"eng"}],"oa_version":"Published Version","has_accepted_license":"1","pubrep_id":"28","ddc":["005"],"alternative_title":["IST Austria Technical Report"],"related_material":{"record":[{"relation":"later_version","status":"public","id":"3857"}]},"file_date_updated":"2020-07-14T12:46:43Z","day":"02","status":"public","type":"technical_report","date_updated":"2023-02-23T11:45:44Z","date_created":"2018-12-12T11:39:04Z","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee"}],"publisher":"IST Austria","date_published":"2009-11-02T00:00:00Z","publication_identifier":{"issn":["2664-1690"]},"_id":"5392","title":"Probabilistic automata on infinite words: Decidability and undecidability results","doi":"10.15479/AT:IST-2009-0004","language":[{"iso":"eng"}],"file":[{"file_name":"IST-2009-0004_IST-2009-0004.pdf","content_type":"application/pdf","file_id":"5530","access_level":"open_access","date_created":"2018-12-12T11:54:08Z","relation":"main_file","date_updated":"2020-07-14T12:46:43Z","checksum":"fb7563150231325b00b1718d956f687b","file_size":311065,"creator":"system"}],"year":"2009","publication_status":"published","oa":1,"citation":{"chicago":"Chatterjee, Krishnendu. <i>Probabilistic Automata on Infinite Words: Decidability and Undecidability Results</i>. IST Austria, 2009. <a href=\"https://doi.org/10.15479/AT:IST-2009-0004\">https://doi.org/10.15479/AT:IST-2009-0004</a>.","ieee":"K. Chatterjee, <i>Probabilistic automata on infinite words: Decidability and undecidability results</i>. IST Austria, 2009.","ama":"Chatterjee K. <i>Probabilistic Automata on Infinite Words: Decidability and Undecidability Results</i>. IST Austria; 2009. doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0004\">10.15479/AT:IST-2009-0004</a>","mla":"Chatterjee, Krishnendu. <i>Probabilistic Automata on Infinite Words: Decidability and Undecidability Results</i>. IST Austria, 2009, doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0004\">10.15479/AT:IST-2009-0004</a>.","apa":"Chatterjee, K. (2009). <i>Probabilistic automata on infinite words: Decidability and undecidability results</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2009-0004\">https://doi.org/10.15479/AT:IST-2009-0004</a>","ista":"Chatterjee K. 2009. Probabilistic automata on infinite words: Decidability and undecidability results, IST Austria, 17p.","short":"K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"11","page":"17","department":[{"_id":"KrCh"}]},{"type":"technical_report","status":"public","file_date_updated":"2020-07-14T12:46:43Z","day":"09","related_material":{"record":[{"relation":"later_version","id":"4388","status":"public"}]},"alternative_title":["IST Austria Technical Report"],"ddc":["000","005"],"pubrep_id":"29","oa_version":"Published Version","has_accepted_license":"1","abstract":[{"lang":"eng","text":"Gist is a tool that (a) solves the qualitative analysis problem of turn-based probabilistic games with ω-regular objectives; and (b) synthesizes reasonable environment assumptions for synthesis of unrealizable specifications. Our tool provides efficient implementations of several reduction based techniques to solve turn-based probabilistic games, and uses the analysis of turn-based probabilistic games for synthesizing environment assumptions for unrealizable specifications."}],"date_published":"2009-10-09T00:00:00Z","author":[{"orcid":"0000-0002-4561-241X","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","full_name":"Henzinger, Thomas A","last_name":"Henzinger","orcid":"0000−0002−2985−7724"},{"full_name":"Jobstmann, Barbara","first_name":"Barbara","last_name":"Jobstmann"},{"last_name":"Radhakrishna","id":"3B51CAC4-F248-11E8-B48F-1D18A9856A87","first_name":"Arjun","full_name":"Radhakrishna, Arjun"}],"publisher":"IST Austria","date_created":"2018-12-12T11:39:05Z","date_updated":"2023-02-23T12:09:01Z","citation":{"apa":"Chatterjee, K., Henzinger, T. A., Jobstmann, B., &#38; Radhakrishna, A. (2009). <i>Gist: A solver for probabilistic games</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2009-0003\">https://doi.org/10.15479/AT:IST-2009-0003</a>","mla":"Chatterjee, Krishnendu, et al. <i>Gist: A Solver for Probabilistic Games</i>. IST Austria, 2009, doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0003\">10.15479/AT:IST-2009-0003</a>.","ista":"Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2009. Gist: A solver for probabilistic games, IST Austria, 12p.","short":"K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.","ieee":"K. Chatterjee, T. A. Henzinger, B. Jobstmann, and A. Radhakrishna, <i>Gist: A solver for probabilistic games</i>. IST Austria, 2009.","ama":"Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. <i>Gist: A Solver for Probabilistic Games</i>. IST Austria; 2009. doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0003\">10.15479/AT:IST-2009-0003</a>","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, Barbara Jobstmann, and Arjun Radhakrishna. <i>Gist: A Solver for Probabilistic Games</i>. IST Austria, 2009. <a href=\"https://doi.org/10.15479/AT:IST-2009-0003\">https://doi.org/10.15479/AT:IST-2009-0003</a>."},"oa":1,"file":[{"checksum":"49551ac552915b17593a14c993845274","file_size":386866,"creator":"system","relation":"main_file","date_created":"2018-12-12T11:52:58Z","date_updated":"2020-07-14T12:46:43Z","access_level":"open_access","file_name":"IST-2009-0003_IST-2009-0003.pdf","file_id":"5459","content_type":"application/pdf"}],"publication_status":"published","year":"2009","language":[{"iso":"eng"}],"doi":"10.15479/AT:IST-2009-0003","title":"Gist: A solver for probabilistic games","_id":"5393","publication_identifier":{"issn":["2664-1690"]},"department":[{"_id":"KrCh"},{"_id":"ToHe"}],"page":"12","month":"10","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"09","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"page":"11","publication_identifier":{"issn":["2664-1690"]},"_id":"5394","title":"Improved lower bounds for request-response and finitary Streett games","language":[{"iso":"eng"}],"doi":"10.15479/AT:IST-2009-0002","year":"2009","file":[{"file_size":238091,"creator":"system","checksum":"1c50a9723fbae1b2c46d18138968efb3","relation":"main_file","date_created":"2018-12-12T11:53:50Z","date_updated":"2020-07-14T12:46:43Z","access_level":"open_access","file_name":"IST-2009-0002_IST-2009-0002.pdf","file_id":"5511","content_type":"application/pdf"}],"publication_status":"published","oa":1,"citation":{"ama":"Chatterjee K, Henzinger TA, Horn F. <i>Improved Lower Bounds for Request-Response and Finitary Streett Games</i>. IST Austria; 2009. doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0002\">10.15479/AT:IST-2009-0002</a>","ieee":"K. Chatterjee, T. A. Henzinger, and F. Horn, <i>Improved lower bounds for request-response and finitary Streett games</i>. IST Austria, 2009.","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, and Florian Horn. <i>Improved Lower Bounds for Request-Response and Finitary Streett Games</i>. IST Austria, 2009. <a href=\"https://doi.org/10.15479/AT:IST-2009-0002\">https://doi.org/10.15479/AT:IST-2009-0002</a>.","short":"K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.","ista":"Chatterjee K, Henzinger TA, Horn F. 2009. Improved lower bounds for request-response and finitary Streett games, IST Austria, 11p.","apa":"Chatterjee, K., Henzinger, T. A., &#38; Horn, F. (2009). <i>Improved lower bounds for request-response and finitary Streett games</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2009-0002\">https://doi.org/10.15479/AT:IST-2009-0002</a>","mla":"Chatterjee, Krishnendu, et al. <i>Improved Lower Bounds for Request-Response and Finitary Streett Games</i>. IST Austria, 2009, doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0002\">10.15479/AT:IST-2009-0002</a>."},"date_updated":"2020-07-14T23:07:47Z","date_created":"2018-12-12T11:39:05Z","publisher":"IST Austria","author":[{"orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu"},{"last_name":"Henzinger","orcid":"0000−0002−2985−7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","first_name":"Thomas A"},{"first_name":"Florian","id":"37327ACE-F248-11E8-B48F-1D18A9856A87","full_name":"Horn, Florian","last_name":"Horn"}],"date_published":"2009-09-09T00:00:00Z","abstract":[{"text":"We consider two-player games played on graphs with request-response and finitary Streett objectives. We show these games are PSPACE-hard, improving the previous known NP-hardness. We also improve the lower bounds on memory required by the winning strategies for the players.","lang":"eng"}],"oa_version":"Published Version","has_accepted_license":"1","ddc":["004"],"pubrep_id":"30","alternative_title":["IST Austria Technical Report"],"file_date_updated":"2020-07-14T12:46:43Z","day":"09","status":"public","type":"technical_report"},{"abstract":[{"text":"We study observation-based strategies for partially-observable Markov decision processes (POMDPs) with omega-regular objectives. An observation-based strategy relies on partial information about the history of a play, namely, on the past sequence of observa- tions. We consider the qualitative analysis problem: given a POMDP with an omega-regular objective, whether there is an observation-based strategy to achieve the objective with probability 1 (almost-sure winning), or with positive probability (positive winning). Our main results are twofold. First, we present a complete picture of the computational complexity of the qualitative analysis of POMDPs with parity objectives (a canonical form to express omega-regular objectives) and its subclasses. Our contribution consists in establishing several upper and lower bounds that were not known in literature. Second, we present optimal bounds (matching upper and lower bounds) on the memory required by pure and randomized observation-based strategies for the qualitative analysis of POMDPs with parity objectives and its subclasses.","lang":"eng"}],"ddc":["005"],"pubrep_id":"31","oa_version":"Published Version","has_accepted_license":"1","day":"09","file_date_updated":"2020-07-14T12:46:43Z","alternative_title":["IST Austria Technical Report"],"related_material":{"record":[{"relation":"later_version","id":"3855","status":"public"}]},"status":"public","type":"technical_report","date_created":"2018-12-12T11:39:05Z","date_updated":"2023-02-23T11:45:39Z","publisher":"IST Austria","author":[{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee"},{"full_name":"Doyen, Laurent","first_name":"Laurent","last_name":"Doyen"},{"orcid":"0000−0002−2985−7724","last_name":"Henzinger","full_name":"Henzinger, Thomas A","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2009-09-09T00:00:00Z","title":"Qualitative analysis of partially-observable Markov decision processes","_id":"5395","publication_identifier":{"issn":["2664-1690"]},"publication_status":"published","file":[{"date_updated":"2020-07-14T12:46:43Z","relation":"main_file","date_created":"2018-12-12T11:53:25Z","checksum":"04d9cc065cc19598a4e8631c47f1a562","creator":"system","file_size":342088,"file_id":"5486","content_type":"application/pdf","file_name":"IST-2009-0001_IST-2009-0001.pdf","access_level":"open_access"}],"year":"2009","language":[{"iso":"eng"}],"doi":"10.15479/AT:IST-2009-0001","oa":1,"citation":{"mla":"Chatterjee, Krishnendu, et al. <i>Qualitative Analysis of Partially-Observable Markov Decision Processes</i>. IST Austria, 2009, doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0001\">10.15479/AT:IST-2009-0001</a>.","apa":"Chatterjee, K., Doyen, L., &#38; Henzinger, T. A. (2009). <i>Qualitative analysis of partially-observable Markov decision processes</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2009-0001\">https://doi.org/10.15479/AT:IST-2009-0001</a>","short":"K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.","ista":"Chatterjee K, Doyen L, Henzinger TA. 2009. Qualitative analysis of partially-observable Markov decision processes, IST Austria, 20p.","ieee":"K. Chatterjee, L. Doyen, and T. A. Henzinger, <i>Qualitative analysis of partially-observable Markov decision processes</i>. IST Austria, 2009.","ama":"Chatterjee K, Doyen L, Henzinger TA. <i>Qualitative Analysis of Partially-Observable Markov Decision Processes</i>. IST Austria; 2009. doi:<a href=\"https://doi.org/10.15479/AT:IST-2009-0001\">10.15479/AT:IST-2009-0001</a>","chicago":"Chatterjee, Krishnendu, Laurent Doyen, and Thomas A Henzinger. <i>Qualitative Analysis of Partially-Observable Markov Decision Processes</i>. IST Austria, 2009. <a href=\"https://doi.org/10.15479/AT:IST-2009-0001\">https://doi.org/10.15479/AT:IST-2009-0001</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"09","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"page":"20"},{"citation":{"ista":"Knuesel M, Meyer K, Bernecky C, Taatjes D. 2009. The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function. Genes and Development. 23(4), 439–451.","short":"M. Knuesel, K. Meyer, C. Bernecky, D. Taatjes, Genes and Development 23 (2009) 439–451.","mla":"Knuesel, Matthew, et al. “The Human CDK8 Subcomplex Is a Molecular Switch That Controls Mediator Coactivator Function.” <i>Genes and Development</i>, vol. 23, no. 4, Cold Spring Harbor Laboratory Press, 2009, pp. 439–51, doi:<a href=\"https://doi.org/10.1101/gad.1767009\">10.1101/gad.1767009</a>.","apa":"Knuesel, M., Meyer, K., Bernecky, C., &#38; Taatjes, D. (2009). The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function. <i>Genes and Development</i>. Cold Spring Harbor Laboratory Press. <a href=\"https://doi.org/10.1101/gad.1767009\">https://doi.org/10.1101/gad.1767009</a>","ama":"Knuesel M, Meyer K, Bernecky C, Taatjes D. The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function. <i>Genes and Development</i>. 2009;23(4):439-451. doi:<a href=\"https://doi.org/10.1101/gad.1767009\">10.1101/gad.1767009</a>","ieee":"M. Knuesel, K. Meyer, C. Bernecky, and D. Taatjes, “The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function,” <i>Genes and Development</i>, vol. 23, no. 4. Cold Spring Harbor Laboratory Press, pp. 439–451, 2009.","chicago":"Knuesel, Matthew, Krista Meyer, Carrie Bernecky, and Dylan Taatjes. “The Human CDK8 Subcomplex Is a Molecular Switch That Controls Mediator Coactivator Function.” <i>Genes and Development</i>. Cold Spring Harbor Laboratory Press, 2009. <a href=\"https://doi.org/10.1101/gad.1767009\">https://doi.org/10.1101/gad.1767009</a>."},"oa":1,"doi":"10.1101/gad.1767009","language":[{"iso":"eng"}],"publication_status":"published","year":"2009","_id":"599","publication":"Genes and Development","title":"The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function","volume":23,"article_processing_charge":"No","page":"439 - 451","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648653/","open_access":"1"}],"month":"02","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","type":"journal_article","extern":"1","day":"15","oa_version":"None","publist_id":"7211","abstract":[{"lang":"eng","text":"The human CDK8 subcomplex (CDK8, cyclin C, Med12, and Med13) negatively regulates transcription in ways not completely defined; past studies suggested CDK8 kinase activity was required for its repressive function. Using a reconstituted transcription system together with recombinant or endogenous CDK8 subcomplexes, we demonstrate that, in fact, Med12 and Med13 are critical for subcomplex-dependent repression, whereas CDK8 kinase activity is not. A hallmark of activated transcription is efficient reinitiation from promoter-bound scaffold complexes that recruit a series of pol II enzymes to the gene. Notably, the CDK8 submodule strongly represses even reinitiation events, suggesting a means to fine tune transcript levels. Structural and biochemical studies confirm the CDK8 submodule binds the Mediator leg/tail domain via the Med13 subunit, and this submodule-Mediator association precludes pol II recruitment. Collectively, these results reveal the CDK8 subcomplex functions as a simple switch that controls the Mediator-pol II interaction to help regulate transcription initiation and reinitiation events. As Mediator is generally required for expression of protein-coding genes, this may reflect a common mechanism by which activated transcription is shut down in human cells."}],"date_published":"2009-02-15T00:00:00Z","publisher":"Cold Spring Harbor Laboratory Press","author":[{"first_name":"Matthew","full_name":"Knuesel, Matthew","last_name":"Knuesel"},{"last_name":"Meyer","full_name":"Meyer, Krista","first_name":"Krista"},{"last_name":"Bernecky","orcid":"0000-0003-0893-7036","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","full_name":"Bernecky, Carrie A","first_name":"Carrie A"},{"first_name":"Dylan","full_name":"Taatjes, Dylan","last_name":"Taatjes"}],"issue":"4","date_updated":"2021-01-12T08:05:32Z","date_created":"2018-12-11T11:47:25Z","intvolume":"        23"},{"date_published":"2009-04-23T00:00:00Z","author":[{"first_name":"Annelie","full_name":"Persson, Annelie","last_name":"Persson"},{"full_name":"Gross, Einav","first_name":"Einav","last_name":"Gross"},{"last_name":"Laurent","full_name":"Laurent, Patrick","first_name":"Patrick"},{"last_name":"Busch","full_name":"Busch, Karl Emanuel","first_name":"Karl Emanuel"},{"last_name":"Bretes","first_name":"Hugo","full_name":"Bretes, Hugo"},{"first_name":"Mario","full_name":"de Bono, Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8347-0443","last_name":"de Bono"}],"quality_controlled":"1","publisher":"Springer Nature","external_id":{"pmid":["19262507"]},"issue":"7241","intvolume":"       458","date_created":"2019-03-21T07:48:44Z","date_updated":"2021-01-12T08:06:20Z","status":"public","type":"journal_article","extern":"1","day":"23","oa_version":"None","abstract":[{"lang":"eng","text":"Behaviours evolve by iterations of natural selection, but we have few insights into the molecular and neural mechanisms involved. Here we show that some Caenorhabditis elegans wild strains switch between two foraging behaviours in response to subtle changes in ambient oxygen. This finely tuned switch is conferred by a naturally variable hexacoordinated globin, GLB-5. GLB-5 acts with the atypical soluble guanylate cyclases1,2,3, which are a different type of oxygen binding protein, to tune the dynamic range of oxygen-sensing neurons close to atmospheric (21%) concentrations. Calcium imaging indicates that one group of these neurons is activated when oxygen rises towards 21%, and is inhibited as oxygen drops below 21%. The soluble guanylate cyclase GCY-35 is required for high oxygen to activate the neurons; GLB-5 provides inhibitory input when oxygen decreases below 21%. Together, these oxygen binding proteins tune neuronal and behavioural responses to a narrow oxygen concentration range close to atmospheric levels. The effect of the glb-5 gene on oxygen sensing and foraging is modified by the naturally variable neuropeptide receptor npr-1 (refs 4, 5), providing insights into how polygenic variation reshapes neural circuit function."}],"page":"1030-1033","pmid":1,"month":"04","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Persson A, Gross E, Laurent P, Busch KE, Bretes H, de Bono M. Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis elegans. <i>Nature</i>. 2009;458(7241):1030-1033. doi:<a href=\"https://doi.org/10.1038/nature07820\">10.1038/nature07820</a>","ieee":"A. Persson, E. Gross, P. Laurent, K. E. Busch, H. Bretes, and M. de Bono, “Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis elegans,” <i>Nature</i>, vol. 458, no. 7241. Springer Nature, pp. 1030–1033, 2009.","chicago":"Persson, Annelie, Einav Gross, Patrick Laurent, Karl Emanuel Busch, Hugo Bretes, and Mario de Bono. “Natural Variation in a Neural Globin Tunes Oxygen Sensing in Wild Caenorhabditis Elegans.” <i>Nature</i>. Springer Nature, 2009. <a href=\"https://doi.org/10.1038/nature07820\">https://doi.org/10.1038/nature07820</a>.","short":"A. Persson, E. Gross, P. Laurent, K.E. Busch, H. Bretes, M. de Bono, Nature 458 (2009) 1030–1033.","ista":"Persson A, Gross E, Laurent P, Busch KE, Bretes H, de Bono M. 2009. Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis elegans. Nature. 458(7241), 1030–1033.","apa":"Persson, A., Gross, E., Laurent, P., Busch, K. E., Bretes, H., &#38; de Bono, M. (2009). Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis elegans. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nature07820\">https://doi.org/10.1038/nature07820</a>","mla":"Persson, Annelie, et al. “Natural Variation in a Neural Globin Tunes Oxygen Sensing in Wild Caenorhabditis Elegans.” <i>Nature</i>, vol. 458, no. 7241, Springer Nature, 2009, pp. 1030–33, doi:<a href=\"https://doi.org/10.1038/nature07820\">10.1038/nature07820</a>."},"publication_status":"published","year":"2009","language":[{"iso":"eng"}],"doi":"10.1038/nature07820","_id":"6144","volume":458,"publication":"Nature","title":"Natural variation in a neural globin tunes oxygen sensing in wild Caenorhabditis elegans","publication_identifier":{"issn":["0028-0836","1476-4687"]}},{"month":"04","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","page":"375-385","pmid":1,"doi":"10.1016/j.cmet.2009.02.003","language":[{"iso":"eng"}],"year":"2009","publication_status":"published","publication_identifier":{"issn":["1550-4131"]},"_id":"6145","title":"Coordinated regulation of foraging and metabolism in C. elegans by RFamide neuropeptide signaling","volume":9,"publication":"Cell Metabolism","citation":{"apa":"Cohen, M., Reale, V., Olofsson, B., Knights, A., Evans, P., &#38; de Bono, M. (2009). Coordinated regulation of foraging and metabolism in C. elegans by RFamide neuropeptide signaling. <i>Cell Metabolism</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cmet.2009.02.003\">https://doi.org/10.1016/j.cmet.2009.02.003</a>","mla":"Cohen, Merav, et al. “Coordinated Regulation of Foraging and Metabolism in C. Elegans by RFamide Neuropeptide Signaling.” <i>Cell Metabolism</i>, vol. 9, no. 4, Elsevier, 2009, pp. 375–85, doi:<a href=\"https://doi.org/10.1016/j.cmet.2009.02.003\">10.1016/j.cmet.2009.02.003</a>.","ista":"Cohen M, Reale V, Olofsson B, Knights A, Evans P, de Bono M. 2009. Coordinated regulation of foraging and metabolism in C. elegans by RFamide neuropeptide signaling. Cell Metabolism. 9(4), 375–385.","short":"M. Cohen, V. Reale, B. Olofsson, A. Knights, P. Evans, M. de Bono, Cell Metabolism 9 (2009) 375–385.","chicago":"Cohen, Merav, Vincenzina Reale, Birgitta Olofsson, Andrew Knights, Peter Evans, and Mario de Bono. “Coordinated Regulation of Foraging and Metabolism in C. Elegans by RFamide Neuropeptide Signaling.” <i>Cell Metabolism</i>. Elsevier, 2009. <a href=\"https://doi.org/10.1016/j.cmet.2009.02.003\">https://doi.org/10.1016/j.cmet.2009.02.003</a>.","ama":"Cohen M, Reale V, Olofsson B, Knights A, Evans P, de Bono M. Coordinated regulation of foraging and metabolism in C. elegans by RFamide neuropeptide signaling. <i>Cell Metabolism</i>. 2009;9(4):375-385. doi:<a href=\"https://doi.org/10.1016/j.cmet.2009.02.003\">10.1016/j.cmet.2009.02.003</a>","ieee":"M. Cohen, V. Reale, B. Olofsson, A. Knights, P. Evans, and M. de Bono, “Coordinated regulation of foraging and metabolism in C. elegans by RFamide neuropeptide signaling,” <i>Cell Metabolism</i>, vol. 9, no. 4. Elsevier, pp. 375–385, 2009."},"issue":"4","date_updated":"2021-01-12T08:06:20Z","intvolume":"         9","date_created":"2019-03-21T07:57:52Z","date_published":"2009-04-08T00:00:00Z","external_id":{"pmid":["19356718"]},"author":[{"full_name":"Cohen, Merav","first_name":"Merav","last_name":"Cohen"},{"full_name":"Reale, Vincenzina","first_name":"Vincenzina","last_name":"Reale"},{"last_name":"Olofsson","first_name":"Birgitta","full_name":"Olofsson, Birgitta"},{"last_name":"Knights","first_name":"Andrew","full_name":"Knights, Andrew"},{"first_name":"Peter","full_name":"Evans, Peter","last_name":"Evans"},{"id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario","first_name":"Mario","last_name":"de Bono","orcid":"0000-0001-8347-0443"}],"quality_controlled":"1","publisher":"Elsevier","oa_version":"None","status":"public","type":"journal_article","day":"08","extern":"1"},{"abstract":[{"text":"One possible way to produce ultra-cold, high-phase-space-density quantum gases of molecules in the rovibronic ground state is given by molecule association from quantum-degenerate atomic gases on a Feshbach resonance and subsequent coherent optical multi-photon transfer into the rovibronic ground state. In ultra-cold samples of Cs2 molecules, we observe two-photon dark resonances that connect the intermediate rovibrational level |v=73,J=2 with the rovibrational ground state |v=0,J=0 of the singlet X 1 ∑ g + ground-state potential. For precise dark resonance spectroscopy we exploit the fact that it is possible to efficiently populate the level |v=73,J=2 by two-photon transfer from the dissociation threshold with the stimulated Raman adiabatic passage (STIRAP) technique. We find that at least one of the two-photon resonances is sufficiently strong to allow future implementation of coherent STIRAP transfer of a molecular quantum gas to the rovibrational ground state |v=0,J=0.","lang":"eng"}],"day":"01","extern":"1","status":"public","type":"journal_article","date_created":"2018-12-11T11:49:49Z","publisher":"Springer","external_id":{"arxiv":["0811.0695"]},"volume":95,"year":"2009","language":[{"iso":"eng"}],"month":"05","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0811.0695"}],"page":"219 - 225","publist_id":"6350","oa_version":"None","intvolume":"        95","date_updated":"2021-01-12T06:47:50Z","issue":"2","author":[{"first_name":"Manfred","full_name":"Mark, Manfred","last_name":"Mark"},{"last_name":"Danzl","orcid":"0000-0001-8559-3973","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G"},{"first_name":"Elmar","full_name":"Haller, Elmar","last_name":"Haller"},{"last_name":"Gustavsson","full_name":"Gustavsson, Mattias","first_name":"Mattias"},{"last_name":"Bouloufa","first_name":"Nadia","full_name":"Bouloufa, Nadia"},{"last_name":"Dulieu","full_name":"Dulieu, Olivier","first_name":"Olivier"},{"last_name":"Salami","first_name":"Houssam","full_name":"Salami, Houssam"},{"full_name":"Bergeman, Thomas","first_name":"Thomas","last_name":"Bergeman"},{"last_name":"Ritsch","full_name":"Ritsch, Helmut","first_name":"Helmut"},{"last_name":"Hart","first_name":"Russell","full_name":"Hart, Russell"},{"last_name":"Nägerl","first_name":"Hanns","full_name":"Nägerl, Hanns"}],"date_published":"2009-05-01T00:00:00Z","publication":"Applied Physics B: Lasers and Optics","_id":"1038","title":"Dark resonances for ground-state transfer of molecular quantum gases","article_processing_charge":"No","publication_status":"published","doi":"10.1007/s00340-009-3407-1","acknowledgement":"We are indebted to R. Grimm for generous support and we thank E. Tiemann for valuable discussions and C. Amiot for providing the FTS data of LAC on Cs2. We gratefully acknowledge funding by the Austrian Ministry of Science and Research (BMWF)\r\nand the Austrian Science Fund (FWF) in the form of a START prize grant and by the European Science Foundation (ESF) in the framework of the EuroQUAM collective research project QuDipMol. R.H. acknowledges support by the European Union in the form of a Marie Curie International Incoming Fellowship (IIF). The work at Stony Brook was supported by the US NSF, under grant PHY0652459.","oa":1,"citation":{"apa":"Mark, M., Danzl, J. G., Haller, E., Gustavsson, M., Bouloufa, N., Dulieu, O., … Nägerl, H. (2009). Dark resonances for ground-state transfer of molecular quantum gases. <i>Applied Physics B: Lasers and Optics</i>. Springer. <a href=\"https://doi.org/10.1007/s00340-009-3407-1\">https://doi.org/10.1007/s00340-009-3407-1</a>","mla":"Mark, Manfred, et al. “Dark Resonances for Ground-State Transfer of Molecular Quantum Gases.” <i>Applied Physics B: Lasers and Optics</i>, vol. 95, no. 2, Springer, 2009, pp. 219–25, doi:<a href=\"https://doi.org/10.1007/s00340-009-3407-1\">10.1007/s00340-009-3407-1</a>.","short":"M. Mark, J.G. Danzl, E. Haller, M. Gustavsson, N. Bouloufa, O. Dulieu, H. Salami, T. Bergeman, H. Ritsch, R. Hart, H. Nägerl, Applied Physics B: Lasers and Optics 95 (2009) 219–225.","ista":"Mark M, Danzl JG, Haller E, Gustavsson M, Bouloufa N, Dulieu O, Salami H, Bergeman T, Ritsch H, Hart R, Nägerl H. 2009. Dark resonances for ground-state transfer of molecular quantum gases. Applied Physics B: Lasers and Optics. 95(2), 219–225.","chicago":"Mark, Manfred, Johann G Danzl, Elmar Haller, Mattias Gustavsson, Nadia Bouloufa, Olivier Dulieu, Houssam Salami, et al. “Dark Resonances for Ground-State Transfer of Molecular Quantum Gases.” <i>Applied Physics B: Lasers and Optics</i>. Springer, 2009. <a href=\"https://doi.org/10.1007/s00340-009-3407-1\">https://doi.org/10.1007/s00340-009-3407-1</a>.","ama":"Mark M, Danzl JG, Haller E, et al. Dark resonances for ground-state transfer of molecular quantum gases. <i>Applied Physics B: Lasers and Optics</i>. 2009;95(2):219-225. doi:<a href=\"https://doi.org/10.1007/s00340-009-3407-1\">10.1007/s00340-009-3407-1</a>","ieee":"M. Mark <i>et al.</i>, “Dark resonances for ground-state transfer of molecular quantum gases,” <i>Applied Physics B: Lasers and Optics</i>, vol. 95, no. 2. Springer, pp. 219–225, 2009."},"arxiv":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"month":"01","main_file_link":[{"url":"https://arxiv.org/abs/1006.0739","open_access":"1"}],"page":"1224 - 1227","year":"2009","language":[{"iso":"eng"}],"volume":325,"date_created":"2018-12-11T11:49:50Z","publisher":"American Association for the Advancement of Science","external_id":{"arxiv":["1006.0739"]},"abstract":[{"text":"Ultracold atomic physics offers myriad possibilities to study strongly correlated many-body systems in lower dimensions. Typically, only ground-state phases are accessible. Using a tunable quantum gas of bosonic cesium atoms, we realized and controlled in one-dimensional geometry a highly excited quantum phase that is stabilized in the presence of attractive interactions by maintaining and strengthening quantum correlations across a confinement-induced resonance. We diagnosed the crossover from repulsive to attractive interactions in terms of the stiffness and energy of the system. Our results open up the experimental study of metastable, excited, many-body phases with strong correlations and their dynamical properties.","lang":"eng"}],"type":"journal_article","status":"public","day":"01","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","doi":"10.1126/science.1175850","_id":"1040","title":"Realization of an excited, strongly correlated quantum gas Phase","publication":"Science","article_processing_charge":"No","citation":{"chicago":"Haller, Elmar, Mattias Gustavsson, Manfred Mark, Johann G Danzl, Russell Hart, Guido Pupillo, and Hanns Nägerl. “Realization of an Excited, Strongly Correlated Quantum Gas Phase.” <i>Science</i>. American Association for the Advancement of Science, 2009. <a href=\"https://doi.org/10.1126/science.1175850\">https://doi.org/10.1126/science.1175850</a>.","ama":"Haller E, Gustavsson M, Mark M, et al. Realization of an excited, strongly correlated quantum gas Phase. <i>Science</i>. 2009;325(5945):1224-1227. doi:<a href=\"https://doi.org/10.1126/science.1175850\">10.1126/science.1175850</a>","ieee":"E. Haller <i>et al.</i>, “Realization of an excited, strongly correlated quantum gas Phase,” <i>Science</i>, vol. 325, no. 5945. American Association for the Advancement of Science, pp. 1224–1227, 2009.","short":"E. Haller, M. Gustavsson, M. Mark, J.G. Danzl, R. Hart, G. Pupillo, H. Nägerl, Science 325 (2009) 1224–1227.","ista":"Haller E, Gustavsson M, Mark M, Danzl JG, Hart R, Pupillo G, Nägerl H. 2009. Realization of an excited, strongly correlated quantum gas Phase. Science. 325(5945), 1224–1227.","apa":"Haller, E., Gustavsson, M., Mark, M., Danzl, J. G., Hart, R., Pupillo, G., &#38; Nägerl, H. (2009). Realization of an excited, strongly correlated quantum gas Phase. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1175850\">https://doi.org/10.1126/science.1175850</a>","mla":"Haller, Elmar, et al. “Realization of an Excited, Strongly Correlated Quantum Gas Phase.” <i>Science</i>, vol. 325, no. 5945, American Association for the Advancement of Science, 2009, pp. 1224–27, doi:<a href=\"https://doi.org/10.1126/science.1175850\">10.1126/science.1175850</a>."},"arxiv":1,"acknowledgement":"We thank S. Giorgini and C. Menotti for helpful discussions and for providing the theory curves shown in Fig. 3A. We are indebted to R. Grimm for generous support and to H. Häffner and his group for the loan of a charge-coupled device camera. We gratefully acknowledge funding by the Austrian Ministry of Science and Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START prize grant and by the European Union through the Specific Targeted Research Project FP7-ICT-2007-C project NAME-QUAM (Nanodesigning of Atomic and Molecular Quantum Matter) and within the framework of the EuroQUASAR collective research project Quantum-Degenerate Gases for Precision Measurements. R.H. is supported by a Marie Curie International Incoming Fellowship within the 7th European Community Framework Programme.","oa":1,"issue":"5945","intvolume":"       325","date_updated":"2021-01-12T06:47:51Z","date_published":"2009-01-01T00:00:00Z","author":[{"first_name":"Elmar","full_name":"Haller, Elmar","last_name":"Haller"},{"first_name":"Mattias","full_name":"Gustavsson, Mattias","last_name":"Gustavsson"},{"first_name":"Manfred","full_name":"Mark, Manfred","last_name":"Mark"},{"orcid":"0000-0001-8559-3973","last_name":"Danzl","full_name":"Danzl, Johann G","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"first_name":"Guido","full_name":"Pupillo, Guido","last_name":"Pupillo"},{"first_name":"Hanns","full_name":"Nägerl, Hanns","last_name":"Nägerl"}],"publist_id":"6348","oa_version":"None"},{"date_created":"2018-12-11T11:49:50Z","intvolume":"        11","date_updated":"2021-01-12T06:47:51Z","author":[{"first_name":"Johann G","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","last_name":"Danzl"},{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"first_name":"Elmar","full_name":"Haller, Elmar","last_name":"Haller"},{"last_name":"Gustavsson","first_name":"Mattias","full_name":"Gustavsson, Mattias"},{"last_name":"Hart","first_name":"Russell","full_name":"Hart, Russell"},{"first_name":"Andreas","full_name":"Liem, Andreas","last_name":"Liem"},{"last_name":"Zellmer","full_name":"Zellmer, Holger","first_name":"Holger"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}],"publisher":"IOP Publishing Ltd.","external_id":{"arxiv":["0812.5070"]},"date_published":"2009-03-14T00:00:00Z","abstract":[{"lang":"eng","text":"We demonstrate efficient transfer of ultracold molecules into a deeply bound rovibrational level of the singlet ground state potential in the presence of an optical lattice. The overall molecule creation efficiency is 25%, and the transfer efficiency to the rovibrational level |v = 73, J = 2) is above 80%. We find that the molecules in |v = 73, J = 2) are trapped in the optical lattice, and that the lifetime in the lattice is limited by optical excitation by the lattice light. The molecule trapping time for a lattice depth of 15 atomic recoil energies is about 20 ms. We determine the trapping frequency by the lattice phase and amplitude modulation technique. It will now be possible to transfer the molecules to the rovibrational ground state |v = 0, J = 0) in the presence of the optical lattice."}],"publist_id":"6349","oa_version":"None","extern":"1","day":"14","status":"public","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"03","main_file_link":[{"url":"https://arxiv.org/abs/0812.5070","open_access":"1"}],"article_processing_charge":"No","_id":"1041","title":"Deeply bound ultracold molecules in an optical lattice","publication":"New Journal of Physics","volume":11,"publication_status":"published","year":"2009","language":[{"iso":"eng"}],"doi":"10.1088/1367-2630/11/5/055036","acknowledgement":"We are indebted to R Grimm for generous support and we thank S Knoop, N Boloufa, and O Dulieu for valuable discussions. We gratefully acknowledge funding by the Austrian Ministry of Science and Research (BMWF) and the Austrian Science Fund (FWF) in the form of a START prize grant. RH acknowledges support by the European Union in the form of a Marie-Curie International Incoming Fellowship (IIF).","oa":1,"arxiv":1,"citation":{"short":"J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, R. Hart, A. Liem, H. Zellmer, H. Nägerl, New Journal of Physics 11 (2009).","ista":"Danzl JG, Mark M, Haller E, Gustavsson M, Hart R, Liem A, Zellmer H, Nägerl H. 2009. Deeply bound ultracold molecules in an optical lattice. New Journal of Physics. 11.","mla":"Danzl, Johann G., et al. “Deeply Bound Ultracold Molecules in an Optical Lattice.” <i>New Journal of Physics</i>, vol. 11, IOP Publishing Ltd., 2009, doi:<a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">10.1088/1367-2630/11/5/055036</a>.","apa":"Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Hart, R., Liem, A., … Nägerl, H. (2009). Deeply bound ultracold molecules in an optical lattice. <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">https://doi.org/10.1088/1367-2630/11/5/055036</a>","chicago":"Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell Hart, Andreas Liem, Holger Zellmer, and Hanns Nägerl. “Deeply Bound Ultracold Molecules in an Optical Lattice.” <i>New Journal of Physics</i>. IOP Publishing Ltd., 2009. <a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">https://doi.org/10.1088/1367-2630/11/5/055036</a>.","ieee":"J. G. Danzl <i>et al.</i>, “Deeply bound ultracold molecules in an optical lattice,” <i>New Journal of Physics</i>, vol. 11. IOP Publishing Ltd., 2009.","ama":"Danzl JG, Mark M, Haller E, et al. Deeply bound ultracold molecules in an optical lattice. <i>New Journal of Physics</i>. 2009;11. doi:<a href=\"https://doi.org/10.1088/1367-2630/11/5/055036\">10.1088/1367-2630/11/5/055036</a>"}},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1039/b820542f","publication_status":"published","publication":"Faraday Discussions","article_processing_charge":"No","title":"Precision molecular spectroscopy for ground state transfer of molecular quantum gases","_id":"1043","arxiv":1,"citation":{"apa":"Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Bouloufa, N., Dulieu, O., … Nägerl, H. (2009). Precision molecular spectroscopy for ground state transfer of molecular quantum gases. <i>Faraday Discussions</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/b820542f\">https://doi.org/10.1039/b820542f</a>","mla":"Danzl, Johann G., et al. “Precision Molecular Spectroscopy for Ground State Transfer of Molecular Quantum Gases.” <i>Faraday Discussions</i>, vol. 142, Royal Society of Chemistry, 2009, pp. 283–95, doi:<a href=\"https://doi.org/10.1039/b820542f\">10.1039/b820542f</a>.","ista":"Danzl JG, Mark M, Haller E, Gustavsson M, Bouloufa N, Dulieu O, Ritsch H, Hart R, Nägerl H. 2009. Precision molecular spectroscopy for ground state transfer of molecular quantum gases. Faraday Discussions. 142, 283–295.","short":"J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, N. Bouloufa, O. Dulieu, H. Ritsch, R. Hart, H. Nägerl, Faraday Discussions 142 (2009) 283–295.","ieee":"J. G. Danzl <i>et al.</i>, “Precision molecular spectroscopy for ground state transfer of molecular quantum gases,” <i>Faraday Discussions</i>, vol. 142. Royal Society of Chemistry, pp. 283–295, 2009.","ama":"Danzl JG, Mark M, Haller E, et al. Precision molecular spectroscopy for ground state transfer of molecular quantum gases. <i>Faraday Discussions</i>. 2009;142:283-295. doi:<a href=\"https://doi.org/10.1039/b820542f\">10.1039/b820542f</a>","chicago":"Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Nadia Bouloufa, Olivier Dulieu, Helmut Ritsch, Russell Hart, and Hanns Nägerl. “Precision Molecular Spectroscopy for Ground State Transfer of Molecular Quantum Gases.” <i>Faraday Discussions</i>. Royal Society of Chemistry, 2009. <a href=\"https://doi.org/10.1039/b820542f\">https://doi.org/10.1039/b820542f</a>."},"oa":1,"acknowledgement":"We are indebted to R. Grimm for generous support and we thank T. Bergeman, H.\r\nSalami, J. Hutson, J. Aldegunde, and E. Tiemann for valuable discussions. We\r\ngratefully acknowledge funding by the Austrian Ministry of Science and Research\r\n(BMWF) and the Austrian Science Fund (FWF) in the form of a START prize grant\r\nand by the European Science Foundation (ESF) in the framework of the EuroQUAM collective research project QuDipMol. R. H. acknowledges support by\r\nthe European Union in form of a Marie Curie International Incoming Fellowship\r\n(IIF).","date_updated":"2021-01-12T06:47:52Z","intvolume":"       142","date_published":"2009-01-01T00:00:00Z","author":[{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","first_name":"Johann G","orcid":"0000-0001-8559-3973","last_name":"Danzl"},{"last_name":"Mark","full_name":"Mark, Manfred","first_name":"Manfred"},{"full_name":"Haller, Elmar","first_name":"Elmar","last_name":"Haller"},{"full_name":"Gustavsson, Mattias","first_name":"Mattias","last_name":"Gustavsson"},{"last_name":"Bouloufa","full_name":"Bouloufa, Nadia","first_name":"Nadia"},{"last_name":"Dulieu","first_name":"Olivier","full_name":"Dulieu, Olivier"},{"last_name":"Ritsch","first_name":"Helmut","full_name":"Ritsch, Helmut"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"last_name":"Nägerl","full_name":"Nägerl, Hanns","first_name":"Hanns"}],"oa_version":"Preprint","publist_id":"6347","main_file_link":[{"url":"https://arxiv.org/abs/0811.2374","open_access":"1"}],"month":"01","page":"283 - 295","language":[{"iso":"eng"}],"year":"2009","volume":142,"date_created":"2018-12-11T11:49:51Z","external_id":{"arxiv":["0811.2374"]},"publisher":"Royal Society of Chemistry","abstract":[{"text":"One possibility for the creation of ultracold, high phase space density quantum gases of molecules in the rovibronic ground state relies on first associating weakly-bound molecules from quantum-degenerate atomic gases on a Feshbach resonance and then transferring the molecules via several steps of coherent two-photon stimulated Raman adiabatic passage (STIRAP) into the rovibronic ground state. Here, in ultracold samples of Cs2 Feshbach molecules produced out of ultracold samples of Cs atoms, we observe several optical transitions to deeply-bound rovibrational levels of the excited 0 u+ molecular potentials with high resolution. At least one of these transitions, although rather weak, allows efficient STIRAP transfer into the deeply-bound vibrational level v = 73&gt; of the singlet X 1Σg+ ground state potential, as recently demonstrated (J. G. Danzl, E. Haller, M. Gustavsson, M. J. Mark, R. Hart, N. Bouloufa, O. Dulieu, H. Ritsch, and H.-C. Nägerl, Science, 2008, 321, 1062). From this level, the rovibrational ground state v = 0, J = 0&gt; can be reached with one more transfer step. In total, our results show that coherent ground state transfer for Cs2 is possible using a maximum of two successive two-photon STIRAP processes or one single four-photon STIRAP process.","lang":"eng"}],"type":"journal_article","status":"public","extern":"1","day":"01"},{"article_type":"original","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044190/","open_access":"1"}],"month":"06","pmid":1,"page":"1451-1454","department":[{"_id":"DaZi"}],"publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"volume":324,"language":[{"iso":"eng"}],"year":"2009","date_created":"2021-06-04T08:55:41Z","external_id":{"pmid":["19520962"]},"publisher":"American Association for the Advancement of Science","quality_controlled":"1","abstract":[{"text":"Parent-of-origin-specific (imprinted) gene expression is regulated in Arabidopsis thaliana endosperm by cytosine demethylation of the maternal genome mediated by the DNA glycosylase DEMETER, but the extent of the methylation changes is not known. Here, we show that virtually the entire endosperm genome is demethylated, coupled with extensive local non-CG hypermethylation of small interfering RNA–targeted sequences. Mutation of DEMETER partially restores endosperm CG methylation to levels found in other tissues, indicating that CG demethylation is specific to maternal sequences. Endosperm demethylation is accompanied by CHH hypermethylation of embryo transposable elements. Our findings demonstrate extensive reconfiguration of the endosperm methylation landscape that likely reinforces transposon silencing in the embryo.","lang":"eng"}],"day":"12","extern":"1","type":"journal_article","status":"public","keyword":["Multidisciplinary"],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"9453","article_processing_charge":"No","title":"Genome-wide demethylation of Arabidopsis endosperm","publication":"Science","doi":"10.1126/science.1172417","publication_status":"published","oa":1,"citation":{"chicago":"Hsieh, Tzung-Fu, Christian A. Ibarra, Pedro Silva, Assaf Zemach, Leor Eshed-Williams, Robert L. Fischer, and Daniel Zilberman. “Genome-Wide Demethylation of Arabidopsis Endosperm.” <i>Science</i>. American Association for the Advancement of Science, 2009. <a href=\"https://doi.org/10.1126/science.1172417\">https://doi.org/10.1126/science.1172417</a>.","ieee":"T.-F. Hsieh <i>et al.</i>, “Genome-wide demethylation of Arabidopsis endosperm,” <i>Science</i>, vol. 324, no. 5933. American Association for the Advancement of Science, pp. 1451–1454, 2009.","ama":"Hsieh T-F, Ibarra CA, Silva P, et al. Genome-wide demethylation of Arabidopsis endosperm. <i>Science</i>. 2009;324(5933):1451-1454. doi:<a href=\"https://doi.org/10.1126/science.1172417\">10.1126/science.1172417</a>","apa":"Hsieh, T.-F., Ibarra, C. A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R. L., &#38; Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1172417\">https://doi.org/10.1126/science.1172417</a>","mla":"Hsieh, Tzung-Fu, et al. “Genome-Wide Demethylation of Arabidopsis Endosperm.” <i>Science</i>, vol. 324, no. 5933, American Association for the Advancement of Science, 2009, pp. 1451–54, doi:<a href=\"https://doi.org/10.1126/science.1172417\">10.1126/science.1172417</a>.","ista":"Hsieh T-F, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science. 324(5933), 1451–1454.","short":"T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. Zilberman, Science 324 (2009) 1451–1454."},"date_updated":"2021-12-14T08:53:26Z","intvolume":"       324","issue":"5933","author":[{"first_name":"Tzung-Fu","full_name":"Hsieh, Tzung-Fu","last_name":"Hsieh"},{"last_name":"Ibarra","full_name":"Ibarra, Christian A.","first_name":"Christian A."},{"last_name":"Silva","first_name":"Pedro","full_name":"Silva, Pedro"},{"full_name":"Zemach, Assaf","first_name":"Assaf","last_name":"Zemach"},{"full_name":"Eshed-Williams, Leor","first_name":"Leor","last_name":"Eshed-Williams"},{"last_name":"Fischer","first_name":"Robert L.","full_name":"Fischer, Robert L."},{"first_name":"Daniel","full_name":"Zilberman, Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649","last_name":"Zilberman"}],"date_published":"2009-06-12T00:00:00Z","oa_version":"Submitted Version","scopus_import":"1"},{"conference":{"name":"Landau Memorial Conference on Advances in Theoretical Physics"},"citation":{"chicago":"Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski. “Giant Nernst Effect Due to Fluctuating Cooper Pairs in Superconductors,” 1134:140–45. American Institute of Physics, 2009. <a href=\"https://doi.org/10.1063/1.3149485\">https://doi.org/10.1063/1.3149485</a>.","ieee":"M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Giant nernst effect due to fluctuating cooper Pairs in superconductors,” presented at the Landau Memorial Conference on Advances in Theoretical Physics, 2009, vol. 1134, pp. 140–145.","ama":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. Giant nernst effect due to fluctuating cooper Pairs in superconductors. In: Vol 1134. American Institute of Physics; 2009:140-145. doi:<a href=\"https://doi.org/10.1063/1.3149485\">10.1063/1.3149485</a>","apa":"Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2009). Giant nernst effect due to fluctuating cooper Pairs in superconductors (Vol. 1134, pp. 140–145). Presented at the Landau Memorial Conference on Advances in Theoretical Physics, American Institute of Physics. <a href=\"https://doi.org/10.1063/1.3149485\">https://doi.org/10.1063/1.3149485</a>","mla":"Serbyn, Maksym, et al. <i>Giant Nernst Effect Due to Fluctuating Cooper Pairs in Superconductors</i>. Vol. 1134, American Institute of Physics, 2009, pp. 140–45, doi:<a href=\"https://doi.org/10.1063/1.3149485\">10.1063/1.3149485</a>.","short":"M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, in:, American Institute of Physics, 2009, pp. 140–145.","ista":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2009. Giant nernst effect due to fluctuating cooper Pairs in superconductors. Landau Memorial Conference on Advances in Theoretical Physics vol. 1134, 140–145."},"volume":1134,"_id":"964","title":"Giant nernst effect due to fluctuating cooper Pairs in superconductors","doi":"10.1063/1.3149485","year":"2009","publication_status":"published","page":"140 - 145","month":"01","extern":1,"day":"01","type":"conference","status":"public","abstract":[{"lang":"eng","text":"A theory of the fluctuation-induced Nernst efl'ect is developed for a two-dimensional superconductor in a perpendicular magnetic field. First, we derive a simple phenomenological formula for the Nernst coefficient, which naturally explains the giant Nernst signal due to fluctuating Cooper pairs. The latter signal is shown to be large even far from the transition and may exceed by orders of magnitude the Fermi liquid terms. We also present a complete microscopic calculation of the Nernst coefficient for arbitrary magnetic fields and temperatures, which is based on the standard definition of heat current vertices. It is shown that the magnitude and the behavior of the Nernst signal observed experimentally in disordered superconducting films can be well understood on the basis of superconducting fluctuation theory."}],"publist_id":"6435","quality_controlled":0,"author":[{"last_name":"Serbyn","orcid":"0000-0002-2399-5827","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Maksym Serbyn"},{"last_name":"Skvortsov","full_name":"Skvortsov, Mikhail A","first_name":"Mikhail"},{"full_name":"Varlamov, Andrei A","first_name":"Andrei","last_name":"Varlamov"},{"last_name":"Galitski","full_name":"Galitski, Victor M","first_name":"Victor"}],"publisher":"American Institute of Physics","date_published":"2009-01-01T00:00:00Z","date_updated":"2021-01-12T08:22:17Z","intvolume":"      1134","date_created":"2018-12-11T11:49:26Z"},{"language":[{"iso":"eng"}],"doi":"10.1088/0004-637X/693/2/1628","year":"2009","publication_status":"published","_id":"110","publication":"The Astrophysical Journal","title":"Reconnection in three dimensions: The role of spines in three eruptive flares","volume":693,"citation":{"apa":"Des Jardins, A., Canfield, R., Longcope, D., Fordyce, C., &#38; Waitukaitis, S. R. (2009). Reconnection in three dimensions: The role of spines in three eruptive flares. <i>The Astrophysical Journal</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">https://doi.org/10.1088/0004-637X/693/2/1628</a>","mla":"Des Jardins, Angela, et al. “Reconnection in Three Dimensions: The Role of Spines in Three Eruptive Flares.” <i>The Astrophysical Journal</i>, vol. 693, no. 2, IOP Publishing Ltd., 2009, pp. 1628–36, doi:<a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">10.1088/0004-637X/693/2/1628</a>.","ista":"Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. 2009. Reconnection in three dimensions: The role of spines in three eruptive flares. The Astrophysical Journal. 693(2), 1628–1636.","short":"A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, S.R. Waitukaitis, The Astrophysical Journal 693 (2009) 1628–1636.","ama":"Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. Reconnection in three dimensions: The role of spines in three eruptive flares. <i>The Astrophysical Journal</i>. 2009;693(2):1628-1636. doi:<a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">10.1088/0004-637X/693/2/1628</a>","ieee":"A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, and S. R. Waitukaitis, “Reconnection in three dimensions: The role of spines in three eruptive flares,” <i>The Astrophysical Journal</i>, vol. 693, no. 2. IOP Publishing Ltd., pp. 1628–1636, 2009.","chicago":"Des Jardins, Angela, Richard Canfield, Dana Longcope, Crystal Fordyce, and Scott R Waitukaitis. “Reconnection in Three Dimensions: The Role of Spines in Three Eruptive Flares.” <i>The Astrophysical Journal</i>. IOP Publishing Ltd., 2009. <a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">https://doi.org/10.1088/0004-637X/693/2/1628</a>."},"acknowledgement":"This work was supported by RHESSI funds from the University of California at Berkeley through a contract, SA1868-26308PG, with Montana State University. Funding for our Research Experience for Undergraduates (REU) students was provided by NSF grant ATM-0243923.","month":"03","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","page":"1628 - 1636","oa_version":"None","publist_id":"7944","abstract":[{"text":"In order to better understand magnetic reconnection and particle acceleration in solar flares, we compare the RHESSI hard X-ray (HXR) footpoint motions of three flares with a detailed study of the corresponding topology given by a Magnetic Charge Topology model. We analyze the relationship between the footpoint motions and topological spine lines and find that the examined footpoint sources move along spine lines. We present a three-dimensional topological model in which this movement can be understood. As reconnection proceeds, flux is transferred between the reconnecting domains, causing the separator to move. The movement of the separator\\'s chromospheric ends, identified with the HXR footpoints, is along those spine lines on which the separator ends.","lang":"eng"}],"status":"public","type":"journal_article","day":"10","extern":"1","issue":"2","date_updated":"2021-01-12T06:48:16Z","intvolume":"       693","date_created":"2018-12-11T11:44:41Z","date_published":"2009-03-10T00:00:00Z","author":[{"last_name":"Des Jardins","full_name":"Des Jardins, Angela","first_name":"Angela"},{"full_name":"Canfield, Richard","first_name":"Richard","last_name":"Canfield"},{"last_name":"Longcope","full_name":"Longcope, Dana","first_name":"Dana"},{"first_name":"Crystal","full_name":"Fordyce, Crystal","last_name":"Fordyce"},{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176"}],"publisher":"IOP Publishing Ltd.","quality_controlled":"1"},{"date_published":"2009-06-25T00:00:00Z","quality_controlled":"1","publisher":"Nature Publishing Group","author":[{"full_name":"Royer, John","first_name":"John","last_name":"Royer"},{"last_name":"Evans","full_name":"Evans, Daniel","first_name":"Daniel"},{"full_name":"Oyarte, Loreto","first_name":"Loreto","last_name":"Oyarte"},{"last_name":"Guo","full_name":"Guo, Qiti","first_name":"Qiti"},{"last_name":"Kapit","first_name":"Eliot","full_name":"Kapit, Eliot"},{"last_name":"Möbius","first_name":"Matthias","full_name":"Möbius, Matthias"},{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176"},{"last_name":"Jaeger","full_name":"Jaeger, Heinrich","first_name":"Heinrich"}],"issue":"7250","date_updated":"2021-01-12T06:48:21Z","date_created":"2018-12-11T11:44:41Z","intvolume":"       459","status":"public","type":"journal_article","extern":"1","day":"25","oa_version":"None","publist_id":"7943","abstract":[{"lang":"eng","text":"Thin streams of liquid commonly break up into characteristic droplet patterns owing to the surface-tension-driven PlateauRayleigh instability 1-3. Very similar patterns are observed when initially uniform streams of dry granular material break up into clusters of grains4-6, even though flows of macroscopic particles are considered to lack surface tension7,8. Recent studies on freely falling granular streams tracked fluctuations in the stream profile9, but the clustering mechanism remained unresolved because the full evolution of the instability could not be observed. Here we demonstrate that the cluster formation is driven by minute, nanoNewton cohesive forces that arise from a combination of van der Waals interactions and capillary bridges between nanometre-scale surface asperities. Our experiments involve high-speed video imaging of the granular stream in the co-moving frame, control over the properties of the grain surfaces and the use of atomic force microscopy to measure grain-grain interactions. The cohesive forces that we measure correspond to an equivalent surface tension five orders of magnitude below that, of ordinary liquids. We find that, the shapes of these weakly cohesive, non-thermal clusters of macroscopic particles closely resemble droplets resulting from thermally induced rupture of liquid nanojets 10-12."}],"page":"1110 - 1113","month":"06","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Royer J, Evans D, Oyarte L, Guo Q, Kapit E, Möbius M, Waitukaitis SR, Jaeger H. 2009. High-speed tracking of rupture and clustering in freely falling granular streams. Nature. 459(7250), 1110–1113.","short":"J. Royer, D. Evans, L. Oyarte, Q. Guo, E. Kapit, M. Möbius, S.R. Waitukaitis, H. Jaeger, Nature 459 (2009) 1110–1113.","apa":"Royer, J., Evans, D., Oyarte, L., Guo, Q., Kapit, E., Möbius, M., … Jaeger, H. (2009). High-speed tracking of rupture and clustering in freely falling granular streams. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature08115\">https://doi.org/10.1038/nature08115</a>","mla":"Royer, John, et al. “High-Speed Tracking of Rupture and Clustering in Freely Falling Granular Streams.” <i>Nature</i>, vol. 459, no. 7250, Nature Publishing Group, 2009, pp. 1110–13, doi:<a href=\"https://doi.org/10.1038/nature08115\">10.1038/nature08115</a>.","ama":"Royer J, Evans D, Oyarte L, et al. High-speed tracking of rupture and clustering in freely falling granular streams. <i>Nature</i>. 2009;459(7250):1110-1113. doi:<a href=\"https://doi.org/10.1038/nature08115\">10.1038/nature08115</a>","ieee":"J. Royer <i>et al.</i>, “High-speed tracking of rupture and clustering in freely falling granular streams,” <i>Nature</i>, vol. 459, no. 7250. Nature Publishing Group, pp. 1110–1113, 2009.","chicago":"Royer, John, Daniel Evans, Loreto Oyarte, Qiti Guo, Eliot Kapit, Matthias Möbius, Scott R Waitukaitis, and Heinrich Jaeger. “High-Speed Tracking of Rupture and Clustering in Freely Falling Granular Streams.” <i>Nature</i>. Nature Publishing Group, 2009. <a href=\"https://doi.org/10.1038/nature08115\">https://doi.org/10.1038/nature08115</a>."},"acknowledgement":"This work was supported by NSF through its MRSEC programme and the Inter-American Materials Collaboration Chicago-Chile, and by the Keck Initiative for Ultrafast Imaging at the University of Chicago.","doi":"10.1038/nature08115","language":[{"iso":"eng"}],"year":"2009","publication_status":"published","_id":"111","publication":"Nature","volume":459,"title":"High-speed tracking of rupture and clustering in freely falling granular streams"},{"date_created":"2022-04-07T07:53:45Z","external_id":{"pmid":["19922866"]},"quality_controlled":"1","publisher":"Elsevier","abstract":[{"text":"Over the last decade, the nuclear envelope (NE) has emerged as a key component in the organization and function of the nuclear genome. As many as 100 different proteins are thought to specifically localize to this double membrane that separates the cytoplasm and the nucleoplasm of eukaryotic cells. Selective portals through the NE are formed at sites where the inner and outer nuclear membranes are fused, and the coincident assembly of ∼30 proteins into nuclear pore complexes occurs. These nuclear pore complexes are essential for the control of nucleocytoplasmic exchange. Many of the NE and nuclear pore proteins are thought to play crucial roles in gene regulation and thus are increasingly linked to human diseases.","lang":"eng"}],"status":"public","type":"journal_article","extern":"1","day":"17","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2009.10.007"}],"article_type":"review","month":"11","page":"606-616","pmid":1,"language":[{"iso":"eng"}],"year":"2009","publication_identifier":{"issn":["1534-5807"]},"volume":17,"issue":"5","date_updated":"2022-07-18T08:55:01Z","intvolume":"        17","date_published":"2009-11-17T00:00:00Z","author":[{"last_name":"HETZER","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","first_name":"Martin W"},{"full_name":"Wente, Susan R.","first_name":"Susan R.","last_name":"Wente"}],"oa_version":"Published Version","scopus_import":"1","keyword":["Developmental Biology","Cell Biology","General Biochemistry","Genetics and Molecular Biology","Molecular Biology"],"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","doi":"10.1016/j.devcel.2009.10.007","publication_status":"published","_id":"11103","article_processing_charge":"No","title":"Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes","publication":"Developmental Cell","citation":{"chicago":"Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental Cell</i>. Elsevier, 2009. <a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">https://doi.org/10.1016/j.devcel.2009.10.007</a>.","ama":"Hetzer M, Wente SR. Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. <i>Developmental Cell</i>. 2009;17(5):606-616. doi:<a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">10.1016/j.devcel.2009.10.007</a>","ieee":"M. Hetzer and S. R. Wente, “Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes,” <i>Developmental Cell</i>, vol. 17, no. 5. Elsevier, pp. 606–616, 2009.","short":"M. Hetzer, S.R. Wente, Developmental Cell 17 (2009) 606–616.","ista":"Hetzer M, Wente SR. 2009. Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. Developmental Cell. 17(5), 606–616.","apa":"Hetzer, M., &#38; Wente, S. R. (2009). Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">https://doi.org/10.1016/j.devcel.2009.10.007</a>","mla":"Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental Cell</i>, vol. 17, no. 5, Elsevier, 2009, pp. 606–16, doi:<a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">10.1016/j.devcel.2009.10.007</a>."},"oa":1},{"volume":10,"publication_identifier":{"issn":["1469-221X"],"eissn":["1469-3178"]},"year":"2009","language":[{"iso":"eng"}],"month":"07","article_type":"original","main_file_link":[{"url":"https://doi.org/10.1038/embor.2009.147","open_access":"1"}],"pmid":1,"page":"697-705","abstract":[{"text":"Nuclear-pore complexes (NPCs) are large protein channels that span the nuclear envelope (NE), which is a double membrane that encloses the nuclear genome of eukaryotes. Each of the typically 2,000–4,000 pores in the NE of vertebrate cells is composed of multiple copies of 30 different proteins known as nucleoporins. The evolutionarily conserved NPC proteins have the well-characterized function of mediating the transport of molecules between the nucleoplasm and the cytoplasm. Mutations in nucleoporins are often linked to specific developmental defects and disease, and the resulting phenotypes are usually interpreted as the consequences of perturbed nuclear transport activity. However, recent evidence suggests that NPCs have additional functions in chromatin organization and gene regulation, some of which might be independent of nuclear transport. Here, we review the transport-dependent and transport-independent roles of NPCs in the regulation of nuclear function and gene expression.","lang":"eng"}],"extern":"1","day":"01","related_material":{"link":[{"url":"https://doi.org/10.1038/embor.2009.176","relation":"erratum"}]},"status":"public","type":"journal_article","date_created":"2022-04-07T07:54:06Z","publisher":"EMBO","quality_controlled":"1","external_id":{"pmid":["19543230"]},"publication":"EMBO reports","_id":"11105","title":"The role of nuclear pores in gene regulation, development and disease","article_processing_charge":"No","publication_status":"published","doi":"10.1038/embor.2009.147","oa":1,"citation":{"ieee":"M. Capelson and M. Hetzer, “The role of nuclear pores in gene regulation, development and disease,” <i>EMBO reports</i>, vol. 10, no. 7. EMBO, pp. 697–705, 2009.","ama":"Capelson M, Hetzer M. The role of nuclear pores in gene regulation, development and disease. <i>EMBO reports</i>. 2009;10(7):697-705. doi:<a href=\"https://doi.org/10.1038/embor.2009.147\">10.1038/embor.2009.147</a>","chicago":"Capelson, Maya, and Martin Hetzer. “The Role of Nuclear Pores in Gene Regulation, Development and Disease.” <i>EMBO Reports</i>. EMBO, 2009. <a href=\"https://doi.org/10.1038/embor.2009.147\">https://doi.org/10.1038/embor.2009.147</a>.","short":"M. Capelson, M. Hetzer, EMBO Reports 10 (2009) 697–705.","ista":"Capelson M, Hetzer M. 2009. The role of nuclear pores in gene regulation, development and disease. EMBO reports. 10(7), 697–705.","apa":"Capelson, M., &#38; Hetzer, M. (2009). The role of nuclear pores in gene regulation, development and disease. <i>EMBO Reports</i>. EMBO. <a href=\"https://doi.org/10.1038/embor.2009.147\">https://doi.org/10.1038/embor.2009.147</a>","mla":"Capelson, Maya, and Martin Hetzer. “The Role of Nuclear Pores in Gene Regulation, Development and Disease.” <i>EMBO Reports</i>, vol. 10, no. 7, EMBO, 2009, pp. 697–705, doi:<a href=\"https://doi.org/10.1038/embor.2009.147\">10.1038/embor.2009.147</a>."},"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","keyword":["Genetics","Molecular Biology","Biochemistry"],"oa_version":"Published Version","scopus_import":"1","intvolume":"        10","date_updated":"2022-07-18T08:42:44Z","issue":"7","author":[{"full_name":"Capelson, Maya","first_name":"Maya","last_name":"Capelson"},{"last_name":"HETZER","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W","full_name":"HETZER, Martin W"}],"date_published":"2009-07-01T00:00:00Z"},{"intvolume":"       186","date_updated":"2022-07-18T08:58:35Z","issue":"2","author":[{"first_name":"Daniel J.","full_name":"Anderson, Daniel J.","last_name":"Anderson"},{"last_name":"Vargas","full_name":"Vargas, Jesse D.","first_name":"Jesse D."},{"full_name":"Hsiao, Joshua P.","first_name":"Joshua P.","last_name":"Hsiao"},{"first_name":"Martin W","full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","last_name":"HETZER"}],"date_published":"2009-07-20T00:00:00Z","oa_version":"Published Version","scopus_import":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","keyword":["Cell Biology"],"publication":"Journal of Cell Biology","_id":"11106","article_processing_charge":"No","title":"Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo","publication_status":"published","doi":"10.1083/jcb.200901106","oa":1,"citation":{"chicago":"Anderson, Daniel J., Jesse D. Vargas, Joshua P. Hsiao, and Martin Hetzer. “Recruitment of Functionally Distinct Membrane Proteins to Chromatin Mediates Nuclear Envelope Formation in Vivo.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2009. <a href=\"https://doi.org/10.1083/jcb.200901106\">https://doi.org/10.1083/jcb.200901106</a>.","ama":"Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo. <i>Journal of Cell Biology</i>. 2009;186(2):183-191. doi:<a href=\"https://doi.org/10.1083/jcb.200901106\">10.1083/jcb.200901106</a>","ieee":"D. J. Anderson, J. D. Vargas, J. P. Hsiao, and M. Hetzer, “Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo,” <i>Journal of Cell Biology</i>, vol. 186, no. 2. Rockefeller University Press, pp. 183–191, 2009.","ista":"Anderson DJ, Vargas JD, Hsiao JP, Hetzer M. 2009. Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo. Journal of Cell Biology. 186(2), 183–191.","short":"D.J. Anderson, J.D. Vargas, J.P. Hsiao, M. Hetzer, Journal of Cell Biology 186 (2009) 183–191.","mla":"Anderson, Daniel J., et al. “Recruitment of Functionally Distinct Membrane Proteins to Chromatin Mediates Nuclear Envelope Formation in Vivo.” <i>Journal of Cell Biology</i>, vol. 186, no. 2, Rockefeller University Press, 2009, pp. 183–91, doi:<a href=\"https://doi.org/10.1083/jcb.200901106\">10.1083/jcb.200901106</a>.","apa":"Anderson, D. J., Vargas, J. D., Hsiao, J. P., &#38; Hetzer, M. (2009). Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.200901106\">https://doi.org/10.1083/jcb.200901106</a>"},"date_created":"2022-04-07T07:54:18Z","publisher":"Rockefeller University Press","quality_controlled":"1","external_id":{"pmid":["19620630"]},"abstract":[{"text":"Formation of the nuclear envelope (NE) around segregated chromosomes occurs by the reshaping of the endoplasmic reticulum (ER), a reservoir for disassembled nuclear membrane components during mitosis. In this study, we show that inner nuclear membrane proteins such as lamin B receptor (LBR), MAN1, Lap2β, and the trans-membrane nucleoporins Ndc1 and POM121 drive the spreading of ER membranes into the emerging NE via their capacity to bind chromatin in a collaborative manner. Despite their redundant functions, decreasing the levels of any of these trans-membrane proteins by RNAi-mediated knockdown delayed NE formation, whereas increasing the levels of any of them had the opposite effect. Furthermore, acceleration of NE formation interferes with chromosome separation during mitosis, indicating that the time frame over which chromatin becomes membrane enclosed is physiologically relevant and regulated. These data suggest that functionally distinct classes of chromatin-interacting membrane proteins, which are present at nonsaturating levels, collaborate to rapidly reestablish the nuclear compartment at the end of mitosis.","lang":"eng"}],"extern":"1","day":"20","related_material":{"link":[{"url":"https://doi.org/10.1083/jcb.20090110620090903c","relation":"erratum"}]},"type":"journal_article","status":"public","month":"07","article_type":"original","main_file_link":[{"url":"https://doi.org/10.1083/jcb.200901106","open_access":"1"}],"pmid":1,"page":"183-191","volume":186,"publication_identifier":{"eissn":["1540-8140"],"issn":["0021-9525"]},"year":"2009","language":[{"iso":"eng"}]},{"date_published":"2009-03-09T00:00:00Z","author":[{"last_name":"Dawson","full_name":"Dawson, T. Renee","first_name":"T. Renee"},{"last_name":"Lazarus","first_name":"Michelle D.","full_name":"Lazarus, Michelle D."},{"orcid":"0000-0002-2111-992X","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W","full_name":"HETZER, Martin W"},{"full_name":"Wente, Susan R.","first_name":"Susan R.","last_name":"Wente"}],"issue":"5","date_updated":"2022-07-18T08:55:05Z","intvolume":"       184","scopus_import":"1","oa_version":"Published Version","keyword":["Cell Biology"],"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","citation":{"chicago":"Dawson, T. Renee, Michelle D. Lazarus, Martin Hetzer, and Susan R. Wente. “ER Membrane–Bending Proteins Are Necessary for de Novo Nuclear Pore Formation.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2009. <a href=\"https://doi.org/10.1083/jcb.200806174\">https://doi.org/10.1083/jcb.200806174</a>.","ieee":"T. R. Dawson, M. D. Lazarus, M. Hetzer, and S. R. Wente, “ER membrane–bending proteins are necessary for de novo nuclear pore formation,” <i>Journal of Cell Biology</i>, vol. 184, no. 5. Rockefeller University Press, pp. 659–675, 2009.","ama":"Dawson TR, Lazarus MD, Hetzer M, Wente SR. ER membrane–bending proteins are necessary for de novo nuclear pore formation. <i>Journal of Cell Biology</i>. 2009;184(5):659-675. doi:<a href=\"https://doi.org/10.1083/jcb.200806174\">10.1083/jcb.200806174</a>","mla":"Dawson, T. Renee, et al. “ER Membrane–Bending Proteins Are Necessary for de Novo Nuclear Pore Formation.” <i>Journal of Cell Biology</i>, vol. 184, no. 5, Rockefeller University Press, 2009, pp. 659–75, doi:<a href=\"https://doi.org/10.1083/jcb.200806174\">10.1083/jcb.200806174</a>.","apa":"Dawson, T. R., Lazarus, M. D., Hetzer, M., &#38; Wente, S. R. (2009). ER membrane–bending proteins are necessary for de novo nuclear pore formation. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.200806174\">https://doi.org/10.1083/jcb.200806174</a>","ista":"Dawson TR, Lazarus MD, Hetzer M, Wente SR. 2009. ER membrane–bending proteins are necessary for de novo nuclear pore formation. Journal of Cell Biology. 184(5), 659–675.","short":"T.R. Dawson, M.D. Lazarus, M. Hetzer, S.R. Wente, Journal of Cell Biology 184 (2009) 659–675."},"oa":1,"doi":"10.1083/jcb.200806174","publication_status":"published","_id":"11107","article_processing_charge":"No","publication":"Journal of Cell Biology","title":"ER membrane–bending proteins are necessary for de novo nuclear pore formation","external_id":{"pmid":["19273614"]},"publisher":"Rockefeller University Press","quality_controlled":"1","date_created":"2022-04-07T07:54:44Z","status":"public","type":"journal_article","day":"09","extern":"1","abstract":[{"lang":"eng","text":"Nucleocytoplasmic transport occurs exclusively through nuclear pore complexes (NPCs) embedded in pores formed by inner and outer nuclear membrane fusion. The mechanism for de novo pore and NPC biogenesis remains unclear. Reticulons (RTNs) and Yop1/DP1 are conserved membrane protein families required to form and maintain the tubular endoplasmic reticulum (ER) and the postmitotic nuclear envelope. In this study, we report that members of the RTN and Yop1/DP1 families are required for nuclear pore formation. Analysis of Saccharomyces cerevisiae prp20-G282S and nup133Δ NPC assembly mutants revealed perturbations in Rtn1–green fluorescent protein (GFP) and Yop1-GFP ER distribution and colocalization to NPC clusters. Combined deletion of RTN1 and YOP1 resulted in NPC clustering, nuclear import defects, and synthetic lethality with the additional absence of Pom34, Pom152, and Nup84 subcomplex members. We tested for a direct role in NPC biogenesis using Xenopus laevis in vitro assays and found that anti-Rtn4a antibodies specifically inhibited de novo nuclear pore formation. We hypothesize that these ER membrane–bending proteins mediate early NPC assembly steps."}],"page":"659-675","pmid":1,"article_type":"original","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1083/jcb.200806174"}],"month":"03","language":[{"iso":"eng"}],"year":"2009","publication_identifier":{"eissn":["1540-8140"],"issn":["0021-9525"]},"volume":184}]