[{"intvolume":"         5","date_created":"2018-12-11T11:49:06Z","date_updated":"2021-01-12T08:21:46Z","quality_controlled":0,"publisher":"BioMed Central","author":[{"last_name":"Breen","first_name":"Michael","full_name":"Breen, Michael S"},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","first_name":"Fyodor","full_name":"Fyodor Kondrashov","last_name":"Kondrashov","orcid":"0000-0001-8243-4694"}],"date_published":"2010-12-31T00:00:00Z","abstract":[{"lang":"eng","text":"Background: Surveying deleterious variation in human populations is crucial for our understanding, diagnosis and potential treatment of human genetic pathologies. A number of recent genome-wide analyses focused on the prevalence of segregating deleterious alleles in the nuclear genome. However, such studies have not been conducted for the mitochondrial genome.Results: We present a systematic survey of polymorphisms in the human mitochondrial genome, including those predicted to be deleterious and those that correspond to known pathogenic mutations. Analyzing 4458 completely sequenced mitochondrial genomes we characterize the genetic diversity of different types of single nucleotide polymorphisms (SNPs) in African (L haplotypes) and non-African (M and N haplotypes) populations. We find that the overall level of polymorphism is higher in the mitochondrial compared to the nuclear genome, although the mitochondrial genome appears to be under stronger selection as indicated by proportionally fewer nonsynonymous than synonymous substitutions. The African mitochondrial genomes show higher heterozygosity, a greater number of polymorphic sites and higher frequencies of polymorphisms for synonymous, benign and damaging polymorphism than non-African genomes. However, African genomes carry significantly fewer SNPs that have been previously characterized as pathogenic compared to non-African genomes.Conclusions: Finding SNPs classified as pathogenic to be the only category of polymorphisms that are more abundant in non-African genomes is best explained by a systematic ascertainment bias that favours the discovery of pathogenic polymorphisms segregating in non-African populations. This further suggests that, contrary to the common disease-common variant hypothesis, pathogenic mutations are largely population-specific and different SNPs may be associated with the same disease in different populations. Therefore, to obtain a comprehensive picture of the deleterious variability in the human population, as well as to improve the diagnostics of individuals carrying African mitochondrial haplotypes, it is necessary to survey different populations independently.Reviewers: This article was reviewed by Dr Mikhail Gelfand, Dr Vasily Ramensky (nominated by Dr Eugene Koonin) and Dr David Rand (nominated by Dr Laurence Hurst)."}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"publist_id":"6749","day":"31","extern":1,"status":"public","type":"journal_article","month":"12","publication":"Biology Direct","_id":"901","title":"Mitochondrial pathogenic mutations are population-specific","volume":5,"year":"2010","publication_status":"published","doi":"10.1186/1745-6150-5-68","acknowledgement":"We thank Ivan Adzhubei and Shamil Sunyaev for extensive assistance with PolyPhen 2 and insightful discussion. We thank the Spanish Ministry of Science and Innovation, Plan Nacional Program grant BFU2009-09271 for funding.","citation":{"apa":"Breen, M., &#38; Kondrashov, F. (2010). Mitochondrial pathogenic mutations are population-specific. <i>Biology Direct</i>. BioMed Central. <a href=\"https://doi.org/10.1186/1745-6150-5-68\">https://doi.org/10.1186/1745-6150-5-68</a>","mla":"Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations Are Population-Specific.” <i>Biology Direct</i>, vol. 5, BioMed Central, 2010, doi:<a href=\"https://doi.org/10.1186/1745-6150-5-68\">10.1186/1745-6150-5-68</a>.","ista":"Breen M, Kondrashov F. 2010. Mitochondrial pathogenic mutations are population-specific. Biology Direct. 5.","short":"M. Breen, F. Kondrashov, Biology Direct 5 (2010).","ama":"Breen M, Kondrashov F. Mitochondrial pathogenic mutations are population-specific. <i>Biology Direct</i>. 2010;5. doi:<a href=\"https://doi.org/10.1186/1745-6150-5-68\">10.1186/1745-6150-5-68</a>","ieee":"M. Breen and F. Kondrashov, “Mitochondrial pathogenic mutations are population-specific,” <i>Biology Direct</i>, vol. 5. BioMed Central, 2010.","chicago":"Breen, Michael, and Fyodor Kondrashov. “Mitochondrial Pathogenic Mutations Are Population-Specific.” <i>Biology Direct</i>. BioMed Central, 2010. <a href=\"https://doi.org/10.1186/1745-6150-5-68\">https://doi.org/10.1186/1745-6150-5-68</a>."}},{"day":"02","extern":"1","status":"public","type":"journal_article","abstract":[{"lang":"eng","text":"In this Letter, we characterize experimentally the diffusiophoretic motion of colloids and λ-DNA toward higher concentration of solutes, using microfluidic technology to build spatially and temporally controlled concentration gradients. We then demonstrate that segregation and spatial patterning of the particles can be achieved from temporal variations of the solute concentration profile. This segregation takes the form of a strong trapping potential, stemming from an osmotically induced rectification mechanism of the solute time-dependent variations. Depending on the spatial and temporal symmetry of the solute signal, localization patterns with various shapes can be achieved. These results highlight the role of solute contrasts in out-of-equilibrium processes occurring in soft matter."}],"external_id":{"arxiv":["1004.1256 "],"pmid":["20481918"]},"publisher":"American Physical Society","quality_controlled":"1","date_created":"2021-01-19T10:25:04Z","publication_identifier":{"issn":["00319007"],"eissn":["10797114"]},"volume":104,"language":[{"iso":"eng"}],"year":"2010","pmid":1,"main_file_link":[{"url":"https://arxiv.org/abs/1004.1256","open_access":"1"}],"article_type":"letter_note","month":"04","scopus_import":"1","oa_version":"Preprint","author":[{"full_name":"Palacci, Jérémie A","id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","first_name":"Jérémie A","last_name":"Palacci","orcid":"0000-0002-7253-9465"},{"last_name":"Abécassis","full_name":"Abécassis, Benjamin","first_name":"Benjamin"},{"last_name":"Cottin-Bizonne","full_name":"Cottin-Bizonne, Cécile","first_name":"Cécile"},{"first_name":"Christophe","full_name":"Ybert, Christophe","last_name":"Ybert"},{"first_name":"Lydéric","full_name":"Bocquet, Lydéric","last_name":"Bocquet"}],"date_published":"2010-04-02T00:00:00Z","date_updated":"2023-02-23T13:46:40Z","intvolume":"       104","issue":"13","oa":1,"citation":{"chicago":"Palacci, Jérémie A, Benjamin Abécassis, Cécile Cottin-Bizonne, Christophe Ybert, and Lydéric Bocquet. “Colloidal Motility and Pattern Formation under Rectified Diffusiophoresis.” <i>Physical Review Letters</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/physrevlett.104.138302\">https://doi.org/10.1103/physrevlett.104.138302</a>.","ieee":"J. A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, and L. Bocquet, “Colloidal motility and pattern formation under rectified diffusiophoresis,” <i>Physical Review Letters</i>, vol. 104, no. 13. American Physical Society, 2010.","ama":"Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. Colloidal motility and pattern formation under rectified diffusiophoresis. <i>Physical Review Letters</i>. 2010;104(13). doi:<a href=\"https://doi.org/10.1103/physrevlett.104.138302\">10.1103/physrevlett.104.138302</a>","short":"J.A. Palacci, B. Abécassis, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical Review Letters 104 (2010).","ista":"Palacci JA, Abécassis B, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Colloidal motility and pattern formation under rectified diffusiophoresis. Physical Review Letters. 104(13), 138302.","apa":"Palacci, J. A., Abécassis, B., Cottin-Bizonne, C., Ybert, C., &#38; Bocquet, L. (2010). Colloidal motility and pattern formation under rectified diffusiophoresis. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.104.138302\">https://doi.org/10.1103/physrevlett.104.138302</a>","mla":"Palacci, Jérémie A., et al. “Colloidal Motility and Pattern Formation under Rectified Diffusiophoresis.” <i>Physical Review Letters</i>, vol. 104, no. 13, 138302, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/physrevlett.104.138302\">10.1103/physrevlett.104.138302</a>."},"arxiv":1,"article_number":"138302","publication":"Physical Review Letters","_id":"9012","title":"Colloidal motility and pattern formation under rectified diffusiophoresis","article_processing_charge":"No","doi":"10.1103/physrevlett.104.138302","publication_status":"published","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425"},{"extern":"1","day":"20","type":"journal_article","status":"public","abstract":[{"text":"In this Letter, we investigate experimentally the nonequilibrium steady state of an active colloidal suspension under gravity field. The active particles are made of chemically powered colloids, showing self propulsion in the presence of an added fuel, here hydrogen peroxide. The active suspension is studied in a dedicated microfluidic device, made of permeable gel microstructures. Both the microdynamics of individual colloids and the global stationary state of the suspension under gravity are measured with optical microscopy. This yields a direct measurement of the effective temperature of the active system as a function of the particle activity, on the basis of the fluctuation-dissipation relationship. Our work is a first step in the experimental exploration of the out-of-equilibrium properties of active colloidal systems.","lang":"eng"}],"quality_controlled":"1","publisher":"American Physical Society ","external_id":{"pmid":["20868136"],"arxiv":["1004.4340"]},"date_created":"2021-01-19T10:26:33Z","volume":105,"publication_identifier":{"eissn":["10797114"],"issn":["00319007"]},"year":"2010","language":[{"iso":"eng"}],"pmid":1,"month":"08","article_type":"letter_note","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1004.4340"}],"scopus_import":"1","oa_version":"Preprint","author":[{"id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","first_name":"Jérémie A","full_name":"Palacci, Jérémie A","last_name":"Palacci","orcid":"0000-0002-7253-9465"},{"last_name":"Cottin-Bizonne","full_name":"Cottin-Bizonne, Cécile","first_name":"Cécile"},{"first_name":"Christophe","full_name":"Ybert, Christophe","last_name":"Ybert"},{"full_name":"Bocquet, Lydéric","first_name":"Lydéric","last_name":"Bocquet"}],"date_published":"2010-08-20T00:00:00Z","intvolume":"       105","date_updated":"2023-02-23T13:46:42Z","issue":"8","oa":1,"article_number":"088304","arxiv":1,"citation":{"short":"J.A. Palacci, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Physical Review Letters 105 (2010).","ista":"Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. 2010. Sedimentation and effective temperature of active colloidal suspensions. Physical Review Letters. 105(8), 088304.","apa":"Palacci, J. A., Cottin-Bizonne, C., Ybert, C., &#38; Bocquet, L. (2010). Sedimentation and effective temperature of active colloidal suspensions. <i>Physical Review Letters</i>. American Physical Society . <a href=\"https://doi.org/10.1103/physrevlett.105.088304\">https://doi.org/10.1103/physrevlett.105.088304</a>","mla":"Palacci, Jérémie A., et al. “Sedimentation and Effective Temperature of Active Colloidal Suspensions.” <i>Physical Review Letters</i>, vol. 105, no. 8, 088304, American Physical Society , 2010, doi:<a href=\"https://doi.org/10.1103/physrevlett.105.088304\">10.1103/physrevlett.105.088304</a>.","chicago":"Palacci, Jérémie A, Cécile Cottin-Bizonne, Christophe Ybert, and Lydéric Bocquet. “Sedimentation and Effective Temperature of Active Colloidal Suspensions.” <i>Physical Review Letters</i>. American Physical Society , 2010. <a href=\"https://doi.org/10.1103/physrevlett.105.088304\">https://doi.org/10.1103/physrevlett.105.088304</a>.","ama":"Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. Sedimentation and effective temperature of active colloidal suspensions. <i>Physical Review Letters</i>. 2010;105(8). doi:<a href=\"https://doi.org/10.1103/physrevlett.105.088304\">10.1103/physrevlett.105.088304</a>","ieee":"J. A. Palacci, C. Cottin-Bizonne, C. Ybert, and L. Bocquet, “Sedimentation and effective temperature of active colloidal suspensions,” <i>Physical Review Letters</i>, vol. 105, no. 8. American Physical Society , 2010."},"_id":"9013","article_processing_charge":"No","title":"Sedimentation and effective temperature of active colloidal suspensions","publication":"Physical Review Letters","publication_status":"published","doi":"10.1103/physrevlett.105.088304","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425"},{"type":"journal_article","status":"public","day":"12","extern":"1","oa_version":"None","abstract":[{"lang":"eng","text":"We have found a new way to express the solutions of the RSM (Reynolds Stress Model) equations that allows us to present the turbulent diffusivities for heat, salt and momentum in a way that is considerably simpler and thus easier to implement than in previous work. The RSM provides the dimensionless mixing efficiencies Γα (α stands for heat, salt and momentum). However, to compute the diffusivities, one needs additional information, specifically, the dissipation ε. Since a dynamic equation for the latter that includes the physical processes relevant to the ocean is still not available, one must resort to different sources of information outside the RSM to obtain a complete Mixing Scheme usable in OGCMs.\r\nAs for the RSM results, we show that the Γα’s are functions of both Ri and Rρ (Richardson number and density ratio representing double diffusion, DD); the Γα are different for heat, salt and momentum; in the case of heat, the traditional value Γh = 0.2 is valid only in the presence of strong shear (when DD is inoperative) while when shear subsides, NATRE data show that Γh can be three times as large, a result that we reproduce. The salt Γs is given in terms of Γh. The momentum Γm has thus far been guessed with different prescriptions while the RSM provides a well defined expression for Γm(Ri, Rρ). Having tested Γh, we then test the momentum Γm by showing that the turbulent Prandtl number Γm/Γh vs. Ri reproduces the available data quite well.\r\n\r\nAs for the dissipation ε, we use different representations, one for the mixed layer (ML), one for the thermocline and one for the ocean’s bottom. For the ML, we adopt a procedure analogous to the one successfully used in PB (planetary boundary layer) studies; for the thermocline, we employ an expression for the variable εN−2 from studies of the internal gravity waves spectra which includes a latitude dependence; for the ocean bottom, we adopt the enhanced bottom diffusivity expression used by previous authors but with a state of the art internal tidal energy formulation and replace the fixed Γα = 0.2 with the RSM result that brings into the problem the Ri, Rρ dependence of the Γα; the unresolved bottom drag, which has thus far been either ignored or modeled with heuristic relations, is modeled using a formalism we previously developed and tested in PBL studies.\r\nWe carried out several tests without an OGCM. Prandtl and flux Richardson numbers vs. Ri. The RSM model reproduces both types of data satisfactorily. DD and Mixing efficiency Γh(Ri, Rρ). The RSM model reproduces well the NATRE data. Bimodal ε-distribution. NATRE data show that ε(Ri < 1) ≈ 10ε(Ri > 1), which our model reproduces. Heat to salt flux ratio. In the Ri ≫ 1 regime, the RSM predictions reproduce the data satisfactorily. NATRE mass diffusivity. The z-profile of the mass diffusivity reproduces well the measurements at NATRE. The local form of the mixing scheme is algebraic with one cubic equation to solve."}],"date_published":"2010-05-12T00:00:00Z","publisher":"Elsevier","author":[{"full_name":"Canuto, V.M.","first_name":"V.M.","last_name":"Canuto"},{"first_name":"A.M.","full_name":"Howard, A.M.","last_name":"Howard"},{"last_name":"Cheng","full_name":"Cheng, Y.","first_name":"Y."},{"full_name":"Muller, Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","first_name":"Caroline J","last_name":"Muller","orcid":"0000-0001-5836-5350"},{"full_name":"Leboissetier, A.","first_name":"A.","last_name":"Leboissetier"},{"first_name":"S.R.","full_name":"Jayne, S.R.","last_name":"Jayne"}],"quality_controlled":"1","issue":"3-4","date_updated":"2022-01-24T13:51:35Z","intvolume":"        34","date_created":"2021-02-15T14:40:19Z","citation":{"chicago":"Canuto, V.M., A.M. Howard, Y. Cheng, Caroline J Muller, A. Leboissetier, and S.R. Jayne. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.” <i>Ocean Modelling</i>. Elsevier, 2010. <a href=\"https://doi.org/10.1016/j.ocemod.2010.04.006\">https://doi.org/10.1016/j.ocemod.2010.04.006</a>.","ama":"Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. Ocean turbulence, III: New GISS vertical mixing scheme. <i>Ocean Modelling</i>. 2010;34(3-4):70-91. doi:<a href=\"https://doi.org/10.1016/j.ocemod.2010.04.006\">10.1016/j.ocemod.2010.04.006</a>","ieee":"V. M. Canuto, A. M. Howard, Y. Cheng, C. J. Muller, A. Leboissetier, and S. R. Jayne, “Ocean turbulence, III: New GISS vertical mixing scheme,” <i>Ocean Modelling</i>, vol. 34, no. 3–4. Elsevier, pp. 70–91, 2010.","apa":"Canuto, V. M., Howard, A. M., Cheng, Y., Muller, C. J., Leboissetier, A., &#38; Jayne, S. R. (2010). Ocean turbulence, III: New GISS vertical mixing scheme. <i>Ocean Modelling</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ocemod.2010.04.006\">https://doi.org/10.1016/j.ocemod.2010.04.006</a>","mla":"Canuto, V. M., et al. “Ocean Turbulence, III: New GISS Vertical Mixing Scheme.” <i>Ocean Modelling</i>, vol. 34, no. 3–4, Elsevier, 2010, pp. 70–91, doi:<a href=\"https://doi.org/10.1016/j.ocemod.2010.04.006\">10.1016/j.ocemod.2010.04.006</a>.","ista":"Canuto VM, Howard AM, Cheng Y, Muller CJ, Leboissetier A, Jayne SR. 2010. Ocean turbulence, III: New GISS vertical mixing scheme. Ocean Modelling. 34(3–4), 70–91.","short":"V.M. Canuto, A.M. Howard, Y. Cheng, C.J. Muller, A. Leboissetier, S.R. Jayne, Ocean Modelling 34 (2010) 70–91."},"doi":"10.1016/j.ocemod.2010.04.006","language":[{"iso":"eng"}],"year":"2010","publication_status":"published","publication_identifier":{"issn":["1463-5003"]},"article_processing_charge":"No","_id":"9145","title":"Ocean turbulence, III: New GISS vertical mixing scheme","volume":34,"publication":"Ocean Modelling","page":"70-91","article_type":"original","month":"05","keyword":["Computer Science (miscellaneous)","Geotechnical Engineering and Engineering Geology","Atmospheric Science","Oceanography"],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9"},{"author":[{"last_name":"O’Gorman","full_name":"O’Gorman, P A","first_name":"P A"},{"first_name":"Caroline J","full_name":"Muller, Caroline J","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","orcid":"0000-0001-5836-5350","last_name":"Muller"}],"date_published":"2010-04-09T00:00:00Z","intvolume":"         5","date_updated":"2022-01-24T13:51:02Z","issue":"2","oa_version":"Published Version","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","keyword":["Renewable Energy","Sustainability and the Environment","Public Health","Environmental and Occupational Health","General Environmental Science"],"oa":1,"citation":{"ista":"O’Gorman PA, Muller CJ. 2010. How closely do changes in surface and column water vapor follow Clausius–Clapeyron scaling in climate change simulations? Environmental Research Letters. 5(2), 025207.","short":"P.A. O’Gorman, C.J. Muller, Environmental Research Letters 5 (2010).","apa":"O’Gorman, P. A., &#38; Muller, C. J. (2010). How closely do changes in surface and column water vapor follow Clausius–Clapeyron scaling in climate change simulations? <i>Environmental Research Letters</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1748-9326/5/2/025207\">https://doi.org/10.1088/1748-9326/5/2/025207</a>","mla":"O’Gorman, P. A., and Caroline J. Muller. “How Closely Do Changes in Surface and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?” <i>Environmental Research Letters</i>, vol. 5, no. 2, 025207, IOP Publishing, 2010, doi:<a href=\"https://doi.org/10.1088/1748-9326/5/2/025207\">10.1088/1748-9326/5/2/025207</a>.","ama":"O’Gorman PA, Muller CJ. How closely do changes in surface and column water vapor follow Clausius–Clapeyron scaling in climate change simulations? <i>Environmental Research Letters</i>. 2010;5(2). doi:<a href=\"https://doi.org/10.1088/1748-9326/5/2/025207\">10.1088/1748-9326/5/2/025207</a>","ieee":"P. A. O’Gorman and C. J. Muller, “How closely do changes in surface and column water vapor follow Clausius–Clapeyron scaling in climate change simulations?,” <i>Environmental Research Letters</i>, vol. 5, no. 2. IOP Publishing, 2010.","chicago":"O’Gorman, P A, and Caroline J Muller. “How Closely Do Changes in Surface and Column Water Vapor Follow Clausius–Clapeyron Scaling in Climate Change Simulations?” <i>Environmental Research Letters</i>. IOP Publishing, 2010. <a href=\"https://doi.org/10.1088/1748-9326/5/2/025207\">https://doi.org/10.1088/1748-9326/5/2/025207</a>."},"article_number":"025207","publication":"Environmental Research Letters","_id":"9146","title":"How closely do changes in surface and column water vapor follow Clausius–Clapeyron scaling in climate change simulations?","article_processing_charge":"No","publication_status":"published","doi":"10.1088/1748-9326/5/2/025207","publisher":"IOP Publishing","quality_controlled":"1","date_created":"2021-02-15T14:40:46Z","day":"09","extern":"1","type":"journal_article","status":"public","abstract":[{"lang":"eng","text":"The factors governing the rate of change in the amount of atmospheric water vapor are analyzed in simulations of climate change. The global-mean amount of water vapor is estimated to increase at a differential rate of 7.3% K − 1 with respect to global-mean surface air temperature in the multi-model mean. Larger rates of change result if the fractional change is evaluated over a finite change in temperature (e.g., 8.2% K − 1 for a 3 K warming), and rates of change of zonal-mean column water vapor range from 6 to 12% K − 1 depending on latitude.\r\nClausius–Clapeyron scaling is directly evaluated using an invariant distribution of monthly-mean relative humidity, giving a rate of 7.4% K − 1 for global-mean water vapor. There are deviations from Clausius–Clapeyron scaling of zonal-mean column water vapor in the tropics and mid-latitudes, but they largely cancel in the global mean. A purely thermodynamic scaling based on a saturated troposphere gives a higher global rate of 7.9% K − 1.\r\nSurface specific humidity increases at a rate of 5.7% K − 1, considerably lower than the rate for global-mean water vapor. Surface specific humidity closely follows Clausius–Clapeyron scaling over ocean. But there are widespread decreases in surface relative humidity over land (by more than 1% K − 1 in many regions), and it is argued that decreases of this magnitude could result from the land/ocean contrast in surface warming."}],"month":"04","article_type":"original","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1088/1748-9326/5/2/025207"}],"volume":5,"publication_identifier":{"issn":["1748-9326"]},"year":"2010","language":[{"iso":"eng"}]},{"abstract":[{"text":"Most eukaryotic cells sense and respond to the mechanical properties of their surroundings. This can strongly influence their collective behavior in embryonic development, tissue function, and wound healing. We use a deformable substrate to measure collective behavior in cell motion due to substrate mediated cell-cell interactions. We quantify spatial and temporal correlations in migration velocity and substrate deformation, and show that cooperative cell-driven patterns of substrate deformation mediate long-distance mechanical coupling between cells and control collective cell migration.","lang":"eng"}],"publist_id":"6523","oa_version":"None","extern":"1","day":"23","type":"journal_article","status":"public","date_created":"2018-12-11T11:49:12Z","intvolume":"       104","date_updated":"2021-01-12T08:21:55Z","issue":"16","publisher":"American Physical Society","author":[{"first_name":"Thomas","full_name":"Angelini, Thomas","last_name":"Angelini"},{"last_name":"Hannezo","orcid":"0000-0001-6005-1561","first_name":"Edouard B","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Trepat","full_name":"Trepat, Xavier","first_name":"Xavier"},{"first_name":"Jeffrey","full_name":"Fredberg, Jeffrey","last_name":"Fredberg"},{"first_name":"David","full_name":"Weitz, David","last_name":"Weitz"}],"date_published":"2010-04-23T00:00:00Z","article_processing_charge":"No","_id":"920","title":"Cell migration driven by cooperative substrate deformation patterns","publication":"Physical Review Letters","volume":104,"publication_status":"published","year":"2010","doi":"10.1103/PhysRevLett.104.168104","language":[{"iso":"eng"}],"acknowledgement":"This work was supported by the NSF (DMR-0602684) and the Harvard MRSEC (DMR-0820484).\r\nWe would like to thank Dr. James Butler for helpful conversations.","citation":{"chicago":"Angelini, Thomas, Edouard B Hannezo, Xavier Trepat, Jeffrey Fredberg, and David Weitz. “Cell Migration Driven by Cooperative Substrate Deformation Patterns.” <i>Physical Review Letters</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/PhysRevLett.104.168104\">https://doi.org/10.1103/PhysRevLett.104.168104</a>.","ama":"Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. Cell migration driven by cooperative substrate deformation patterns. <i>Physical Review Letters</i>. 2010;104(16). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.168104\">10.1103/PhysRevLett.104.168104</a>","ieee":"T. Angelini, E. B. Hannezo, X. Trepat, J. Fredberg, and D. Weitz, “Cell migration driven by cooperative substrate deformation patterns,” <i>Physical Review Letters</i>, vol. 104, no. 16. American Physical Society, 2010.","ista":"Angelini T, Hannezo EB, Trepat X, Fredberg J, Weitz D. 2010. Cell migration driven by cooperative substrate deformation patterns. Physical Review Letters. 104(16).","short":"T. Angelini, E.B. Hannezo, X. Trepat, J. Fredberg, D. Weitz, Physical Review Letters 104 (2010).","mla":"Angelini, Thomas, et al. “Cell Migration Driven by Cooperative Substrate Deformation Patterns.” <i>Physical Review Letters</i>, vol. 104, no. 16, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.168104\">10.1103/PhysRevLett.104.168104</a>.","apa":"Angelini, T., Hannezo, E. B., Trepat, X., Fredberg, J., &#38; Weitz, D. (2010). Cell migration driven by cooperative substrate deformation patterns. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.104.168104\">https://doi.org/10.1103/PhysRevLett.104.168104</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"citation":{"mla":"Salje, E. K. H., et al. “Tin Telluride: A Weakly Co-Elastic Metal.” <i>Physical Review B</i>, vol. 82, no. 18, 184112, APS, 2010, doi:<a href=\"https://doi.org/10.1103/physrevb.82.184112\">10.1103/physrevb.82.184112</a>.","apa":"Salje, E. K. H., Safarik, D. J., Modic, K. A., Gubernatis, J. E., Cooley, J. C., Taylor, R. D., … Lashley, J. C. (2010). Tin telluride: A weakly co-elastic metal. <i>Physical Review B</i>. APS. <a href=\"https://doi.org/10.1103/physrevb.82.184112\">https://doi.org/10.1103/physrevb.82.184112</a>","ista":"Salje EKH, Safarik DJ, Modic KA, Gubernatis JE, Cooley JC, Taylor RD, Mihaila B, Saxena A, Lookman T, Smith JL, Fisher RA, Pasternak M, Opeil CP, Siegrist T, Littlewood PB, Lashley JC. 2010. Tin telluride: A weakly co-elastic metal. Physical Review B. 82(18), 184112.","short":"E.K.H. Salje, D.J. Safarik, K.A. Modic, J.E. Gubernatis, J.C. Cooley, R.D. Taylor, B. Mihaila, A. Saxena, T. Lookman, J.L. Smith, R.A. Fisher, M. Pasternak, C.P. Opeil, T. Siegrist, P.B. Littlewood, J.C. Lashley, Physical Review B 82 (2010).","ieee":"E. K. H. Salje <i>et al.</i>, “Tin telluride: A weakly co-elastic metal,” <i>Physical Review B</i>, vol. 82, no. 18. APS, 2010.","ama":"Salje EKH, Safarik DJ, Modic KA, et al. Tin telluride: A weakly co-elastic metal. <i>Physical Review B</i>. 2010;82(18). doi:<a href=\"https://doi.org/10.1103/physrevb.82.184112\">10.1103/physrevb.82.184112</a>","chicago":"Salje, E. K. H., D. J. Safarik, Kimberly A Modic, J. E. Gubernatis, J. C. Cooley, R. D. Taylor, B. Mihaila, et al. “Tin Telluride: A Weakly Co-Elastic Metal.” <i>Physical Review B</i>. APS, 2010. <a href=\"https://doi.org/10.1103/physrevb.82.184112\">https://doi.org/10.1103/physrevb.82.184112</a>."},"arxiv":1,"article_number":"184112","_id":"7078","title":"Tin telluride: A weakly co-elastic metal","article_processing_charge":"No","publication":"Physical Review B","doi":"10.1103/physrevb.82.184112","publication_status":"published","author":[{"last_name":"Salje","first_name":"E. K. H.","full_name":"Salje, E. K. H."},{"full_name":"Safarik, D. J.","first_name":"D. J.","last_name":"Safarik"},{"orcid":"0000-0001-9760-3147","last_name":"Modic","first_name":"Kimberly A","full_name":"Modic, Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425"},{"last_name":"Gubernatis","first_name":"J. E.","full_name":"Gubernatis, J. E."},{"last_name":"Cooley","full_name":"Cooley, J. C.","first_name":"J. C."},{"full_name":"Taylor, R. D.","first_name":"R. D.","last_name":"Taylor"},{"last_name":"Mihaila","full_name":"Mihaila, B.","first_name":"B."},{"last_name":"Saxena","full_name":"Saxena, A.","first_name":"A."},{"first_name":"T.","full_name":"Lookman, T.","last_name":"Lookman"},{"last_name":"Smith","full_name":"Smith, J. L.","first_name":"J. L."},{"last_name":"Fisher","first_name":"R. A.","full_name":"Fisher, R. A."},{"full_name":"Pasternak, M.","first_name":"M.","last_name":"Pasternak"},{"first_name":"C. P.","full_name":"Opeil, C. P.","last_name":"Opeil"},{"full_name":"Siegrist, T.","first_name":"T.","last_name":"Siegrist"},{"last_name":"Littlewood","full_name":"Littlewood, P. B.","first_name":"P. B."},{"full_name":"Lashley, J. C.","first_name":"J. C.","last_name":"Lashley"}],"date_published":"2010-11-18T00:00:00Z","date_updated":"2021-01-12T08:11:44Z","intvolume":"        82","issue":"18","oa_version":"Preprint","article_type":"original","main_file_link":[{"url":"https://arxiv.org/abs/1011.1445","open_access":"1"}],"month":"11","publication_identifier":{"issn":["1098-0121","1550-235X"]},"volume":82,"language":[{"iso":"eng"}],"year":"2010","external_id":{"arxiv":["1011.1445"]},"publisher":"APS","quality_controlled":"1","date_created":"2019-11-19T13:46:28Z","day":"18","extern":"1","type":"journal_article","status":"public","abstract":[{"text":"We report resonant ultrasound spectroscopy (RUS), dilatometry/magnetostriction, magnetotransport, magnetization, specific-heat, and 119Sn Mössbauer spectroscopy measurements on SnTe and Sn0.995Cr0.005Te. Hall measurements at T=77 K indicate that our Bridgman-grown single crystals have a p-type carrier concentration of 3.4×1019 cm−3 and that our Cr-doped crystals have an n-type concentration of 5.8×1022 cm−3. Although our SnTe crystals are diamagnetic over the temperature range 2≤T≤1100 K, the Cr-doped crystals are room-temperature ferromagnets with a Curie temperature of 294 K. For each sample type, three-terminal capacitive dilatometry measurements detect a subtle 0.5 μm distortion at Tc≈85 K. Whereas our RUS measurements on SnTe show elastic hardening near the structural transition, pointing to co-elastic behavior, similar measurements on Sn0.995Cr0.005Te show a pronounced softening, pointing to ferroelastic behavior. Effective Debye temperature, θD, values of SnTe obtained from 119Sn Mössbauer studies show a hardening of phonons in the range 60–115 K (θD=162 K) as compared with the 100–300 K range (θD=150 K). In addition, a precursor softening extending over approximately 100 K anticipates this collapse at the critical temperature and quantitative analysis over three decades of its reduced modulus finds ΔC44/C44=A|(T−T0)/T0|−κ with κ=0.50±0.02, a value indicating a three-dimensional softening of phonon branches at a temperature T0∼75 K, considerably below Tc. We suggest that the differences in these two types of elastic behaviors lie in the absence of elastic domain-wall motion in the one case and their nucleation in the other.","lang":"eng"}]},{"oa_version":"None","abstract":[{"text":"We have observed that reacting Pb:Te:Ag:Se in a 1:1:1.9:1 molar ratio gives rise to what appears to be a predominantly single-phase alloy, which crystallizes in the PbSe cF8 fcc structure. However, further investigation of the structure using energy dispersive x-ray analysis reveals the presence of two phases, PbSe and β-Ag2Te, with identical lattice parameters. The total thermal conductivity of the formed alloy is remarkably low for a crystalline material, κT<0.6W∕mK at 675K, it is reproducible, and in addition, the compound has good mechanical properties.","lang":"eng"}],"status":"public","type":"journal_article","day":"09","extern":"1","issue":"3","date_updated":"2021-01-12T08:11:44Z","intvolume":"       107","date_created":"2019-11-19T13:47:24Z","date_published":"2010-02-09T00:00:00Z","publisher":"AIP","quality_controlled":"1","author":[{"full_name":"Drymiotis, Fivos R.","first_name":"Fivos R.","last_name":"Drymiotis"},{"first_name":"Tyler B.","full_name":"Drye, Tyler B.","last_name":"Drye"},{"full_name":"Wang, Yisha","first_name":"Yisha","last_name":"Wang"},{"first_name":"Jian","full_name":"He, Jian","last_name":"He"},{"first_name":"Daniel","full_name":"Rhodes, Daniel","last_name":"Rhodes"},{"first_name":"Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","full_name":"Modic, Kimberly A","last_name":"Modic","orcid":"0000-0001-9760-3147"},{"last_name":"Cawthorne","first_name":"Samantha","full_name":"Cawthorne, Samantha"},{"last_name":"Zhang","full_name":"Zhang, Qiu Run","first_name":"Qiu Run"}],"language":[{"iso":"eng"}],"doi":"10.1063/1.3284946","year":"2010","publication_status":"published","publication_identifier":{"issn":["0021-8979","1089-7550"]},"volume":107,"_id":"7079","publication":"Journal of Applied Physics","title":"Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures","article_processing_charge":"No","article_number":"033519","citation":{"ieee":"F. R. Drymiotis <i>et al.</i>, “Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures,” <i>Journal of Applied Physics</i>, vol. 107, no. 3. AIP, 2010.","ama":"Drymiotis FR, Drye TB, Wang Y, et al. Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures. <i>Journal of Applied Physics</i>. 2010;107(3). doi:<a href=\"https://doi.org/10.1063/1.3284946\">10.1063/1.3284946</a>","chicago":"Drymiotis, Fivos R., Tyler B. Drye, Yisha Wang, Jian He, Daniel Rhodes, Kimberly A Modic, Samantha Cawthorne, and Qiu Run Zhang. “Structure Formation and Very Low Thermal Conductivity in Pb:Te:Ag:Se Mixtures.” <i>Journal of Applied Physics</i>. AIP, 2010. <a href=\"https://doi.org/10.1063/1.3284946\">https://doi.org/10.1063/1.3284946</a>.","ista":"Drymiotis FR, Drye TB, Wang Y, He J, Rhodes D, Modic KA, Cawthorne S, Zhang QR. 2010. Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures. Journal of Applied Physics. 107(3), 033519.","short":"F.R. Drymiotis, T.B. Drye, Y. Wang, J. He, D. Rhodes, K.A. Modic, S. Cawthorne, Q.R. Zhang, Journal of Applied Physics 107 (2010).","mla":"Drymiotis, Fivos R., et al. “Structure Formation and Very Low Thermal Conductivity in Pb:Te:Ag:Se Mixtures.” <i>Journal of Applied Physics</i>, vol. 107, no. 3, 033519, AIP, 2010, doi:<a href=\"https://doi.org/10.1063/1.3284946\">10.1063/1.3284946</a>.","apa":"Drymiotis, F. R., Drye, T. B., Wang, Y., He, J., Rhodes, D., Modic, K. A., … Zhang, Q. R. (2010). Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures. <i>Journal of Applied Physics</i>. AIP. <a href=\"https://doi.org/10.1063/1.3284946\">https://doi.org/10.1063/1.3284946</a>"},"article_type":"original","month":"02","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"month":"10","article_type":"letter_note","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","year":"2010","doi":"10.1149/1.3494045","language":[{"iso":"eng"}],"_id":"7318","volume":13,"title":"H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells","publication":"Electrochemical and Solid-State Letters","article_processing_charge":"No","publication_identifier":{"issn":["1099-0062"]},"citation":{"mla":"Giordani, V., et al. “H2O2 Decomposition Reaction as Selecting Tool for Catalysts in Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>, vol. 13, no. 12, A180, The Electrochemical Society, 2010, doi:<a href=\"https://doi.org/10.1149/1.3494045\">10.1149/1.3494045</a>.","apa":"Giordani, V., Freunberger, S. A., Bruce, P. G., Tarascon, J.-M., &#38; Larcher, D. (2010). H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells. <i>Electrochemical and Solid-State Letters</i>. The Electrochemical Society. <a href=\"https://doi.org/10.1149/1.3494045\">https://doi.org/10.1149/1.3494045</a>","short":"V. Giordani, S.A. Freunberger, P.G. Bruce, J.-M. Tarascon, D. Larcher, Electrochemical and Solid-State Letters 13 (2010).","ista":"Giordani V, Freunberger SA, Bruce PG, Tarascon J-M, Larcher D. 2010. H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells. Electrochemical and Solid-State Letters. 13(12), A180.","chicago":"Giordani, V., Stefan Alexander Freunberger, P. G. Bruce, J.-M. Tarascon, and D. Larcher. “H2O2 Decomposition Reaction as Selecting Tool for Catalysts in Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>. The Electrochemical Society, 2010. <a href=\"https://doi.org/10.1149/1.3494045\">https://doi.org/10.1149/1.3494045</a>.","ieee":"V. Giordani, S. A. Freunberger, P. G. Bruce, J.-M. Tarascon, and D. Larcher, “H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells,” <i>Electrochemical and Solid-State Letters</i>, vol. 13, no. 12. The Electrochemical Society, 2010.","ama":"Giordani V, Freunberger SA, Bruce PG, Tarascon J-M, Larcher D. H2O2 decomposition reaction as selecting tool for catalysts in Li–O2 cells. <i>Electrochemical and Solid-State Letters</i>. 2010;13(12). doi:<a href=\"https://doi.org/10.1149/1.3494045\">10.1149/1.3494045</a>"},"article_number":"A180","issue":"12","date_created":"2020-01-15T12:21:06Z","intvolume":"        13","date_updated":"2021-01-12T08:13:01Z","date_published":"2010-10-04T00:00:00Z","publisher":"The Electrochemical Society","quality_controlled":"1","author":[{"first_name":"V.","full_name":"Giordani, V.","last_name":"Giordani"},{"orcid":"0000-0003-2902-5319","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander"},{"last_name":"Bruce","full_name":"Bruce, P. G.","first_name":"P. G."},{"full_name":"Tarascon, J.-M.","first_name":"J.-M.","last_name":"Tarascon"},{"last_name":"Larcher","first_name":"D.","full_name":"Larcher, D."}],"oa_version":"None","abstract":[{"lang":"eng","text":"The decomposition reaction of H2O2 aqueous solutions (H2O2 - H2O + 1/2O2) catalyzed by transition metal oxide powders has been compared with the charging voltage of nonaqueous Li-O2 cells containing the same catalyst. An inverse linear relationship between Ln k (rate constant for the H2O2 decomposition) and the charging voltage has been found, despite differences in media and possible mechanistic differences. The results suggest that the decomposition may be a reliable, useful, and fast screening tool for materials that promote the charging process of the Li-O2 battery and may ultimately give insight into the charging mechanism."}],"status":"public","type":"journal_article","extern":"1","day":"04"},{"publisher":"Springer","author":[{"last_name":"Alistarh","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian","full_name":"Alistarh, Dan-Adrian"},{"full_name":"Attiya, Hagit","first_name":"Hagit","last_name":"Attiya"},{"last_name":"Gilbert","first_name":"Seth","full_name":"Gilbert, Seth"},{"full_name":"Giurgiu, Andrei","first_name":"Andrei","last_name":"Giurgiu"},{"last_name":"Guerraoui","full_name":"Guerraoui, Rachid","first_name":"Rachid"}],"date_published":"2010-01-01T00:00:00Z","date_created":"2018-12-11T11:48:19Z","date_updated":"2023-02-23T13:10:21Z","day":"01","extern":"1","alternative_title":["LNCS"],"type":"conference","status":"public","abstract":[{"lang":"eng","text":"Most people believe that renaming is easy: simply choose a name at random; if more than one process selects the same name, then try again. We highlight the issues that occur when trying to implement such a scheme and shed new light on the read-write complexity of randomized renaming in an asynchronous environment. At the heart of our new perspective stands an adaptive implementation of a randomized test-and-set object, that has poly-logarithmic step complexity per operation, with high probability. Interestingly, our implementation is anonymous, as it does not require process identifiers. Based on this implementation, we present two new randomized renaming algorithms. The first ensures a tight namespace of n names using O( n log4 n) total steps, with high probability. This significantly improves on the complexity of the best previously known namespace-optimal algorithms. The second algorithm achieves a namespace of size k (1 + ε) using O( k log4 k / log2 (1 + ε) ) total steps, both with high probability, where k is the total contention in the execution. It is the first adaptive randomized renaming algorithm, and it improves on existing deterministic solutions by providing a smaller namespace, and by lowering step complexity."}],"publist_id":"6900","oa_version":"None","page":"94 - 108","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","conference":{"name":"DISC: Distributed Computing"},"acknowledgement":"The work of Dan Alistarh is supported by the Swiss NCCR MICS project. The work of Hagit Attiya is supported in part by the Israel Science Foundation (grant number 953/06).","citation":{"chicago":"Alistarh, Dan-Adrian, Hagit Attiya, Seth Gilbert, Andrei Giurgiu, and Rachid Guerraoui. “Fast Randomized Test-and-Set and Renaming,” 6343 LNCS:94–108. Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-15763-9_9\">https://doi.org/10.1007/978-3-642-15763-9_9</a>.","ama":"Alistarh D-A, Attiya H, Gilbert S, Giurgiu A, Guerraoui R. Fast randomized test-and-set and renaming. In: Vol 6343 LNCS. Springer; 2010:94-108. doi:<a href=\"https://doi.org/10.1007/978-3-642-15763-9_9\">10.1007/978-3-642-15763-9_9</a>","ieee":"D.-A. Alistarh, H. Attiya, S. Gilbert, A. Giurgiu, and R. Guerraoui, “Fast randomized test-and-set and renaming,” presented at the DISC: Distributed Computing, 2010, vol. 6343 LNCS, pp. 94–108.","apa":"Alistarh, D.-A., Attiya, H., Gilbert, S., Giurgiu, A., &#38; Guerraoui, R. (2010). Fast randomized test-and-set and renaming (Vol. 6343 LNCS, pp. 94–108). Presented at the DISC: Distributed Computing, Springer. <a href=\"https://doi.org/10.1007/978-3-642-15763-9_9\">https://doi.org/10.1007/978-3-642-15763-9_9</a>","mla":"Alistarh, Dan-Adrian, et al. <i>Fast Randomized Test-and-Set and Renaming</i>. Vol. 6343 LNCS, Springer, 2010, pp. 94–108, doi:<a href=\"https://doi.org/10.1007/978-3-642-15763-9_9\">10.1007/978-3-642-15763-9_9</a>.","ista":"Alistarh D-A, Attiya H, Gilbert S, Giurgiu A, Guerraoui R. 2010. Fast randomized test-and-set and renaming. DISC: Distributed Computing, LNCS, vol. 6343 LNCS, 94–108.","short":"D.-A. Alistarh, H. Attiya, S. Gilbert, A. Giurgiu, R. Guerraoui, in:, Springer, 2010, pp. 94–108."},"_id":"754","article_processing_charge":"No","volume":"6343 LNCS","title":"Fast randomized test-and-set and renaming","year":"2010","publication_status":"published","language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-15763-9_9"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","page":"115 - 126","title":"How efficient can gossip be? (On the cost of resilient information exchange)","_id":"755","volume":"6199 LNCS","article_processing_charge":"No","doi":"10.1007/978-3-642-14162-1_10","language":[{"iso":"eng"}],"publication_status":"published","year":"2010","conference":{"name":"ICALP: International Colloquium on Automota, Languages and Programming"},"acknowledgement":"We would like to thank Prof. Hagit Attiya and the anonymous reviewers for their useful comments on earlier drafts of this paper.","citation":{"chicago":"Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, and Morteza Zadimoghaddam. “How Efficient Can Gossip Be? (On the Cost of Resilient Information Exchange),” 6199 LNCS:115–26. Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-14162-1_10\">https://doi.org/10.1007/978-3-642-14162-1_10</a>.","ieee":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, and M. Zadimoghaddam, “How efficient can gossip be? (On the cost of resilient information exchange),” presented at the ICALP: International Colloquium on Automota, Languages and Programming, 2010, vol. 6199 LNCS, no. PART 2, pp. 115–126.","ama":"Alistarh D-A, Gilbert S, Guerraoui R, Zadimoghaddam M. How efficient can gossip be? (On the cost of resilient information exchange). In: Vol 6199 LNCS. Springer; 2010:115-126. doi:<a href=\"https://doi.org/10.1007/978-3-642-14162-1_10\">10.1007/978-3-642-14162-1_10</a>","short":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, M. Zadimoghaddam, in:, Springer, 2010, pp. 115–126.","ista":"Alistarh D-A, Gilbert S, Guerraoui R, Zadimoghaddam M. 2010. How efficient can gossip be? (On the cost of resilient information exchange). ICALP: International Colloquium on Automota, Languages and Programming, LNCS, vol. 6199 LNCS, 115–126.","apa":"Alistarh, D.-A., Gilbert, S., Guerraoui, R., &#38; Zadimoghaddam, M. (2010). How efficient can gossip be? (On the cost of resilient information exchange) (Vol. 6199 LNCS, pp. 115–126). Presented at the ICALP: International Colloquium on Automota, Languages and Programming, Springer. <a href=\"https://doi.org/10.1007/978-3-642-14162-1_10\">https://doi.org/10.1007/978-3-642-14162-1_10</a>","mla":"Alistarh, Dan-Adrian, et al. <i>How Efficient Can Gossip Be? (On the Cost of Resilient Information Exchange)</i>. Vol. 6199 LNCS, no. PART 2, Springer, 2010, pp. 115–26, doi:<a href=\"https://doi.org/10.1007/978-3-642-14162-1_10\">10.1007/978-3-642-14162-1_10</a>."},"date_updated":"2023-02-23T13:10:40Z","date_created":"2018-12-11T11:48:20Z","issue":"PART 2","author":[{"id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","orcid":"0000-0003-3650-940X"},{"full_name":"Gilbert, Seth","first_name":"Seth","last_name":"Gilbert"},{"first_name":"Rachid","full_name":"Guerraoui, Rachid","last_name":"Guerraoui"},{"last_name":"Zadimoghaddam","full_name":"Zadimoghaddam, Morteza","first_name":"Morteza"}],"publisher":"Springer","date_published":"2010-01-01T00:00:00Z","abstract":[{"lang":"eng","text":"Gossip, also known as epidemic dissemination, is becoming an increasingly popular technique in distributed systems. Yet, it has remained a partially open question: how robust are such protocols? We consider a natural extension of the random phone-call model (introduced by Karp et al. [1]), and we analyze two different notions of robustness: the ability to tolerate adaptive failures, and the ability to tolerate oblivious failures. For adaptive failures, we present a new gossip protocol, TrickleGossip, which achieves near-optimal O(n log 3 n) message complexity. To the best of our knowledge, this is the first epidemic-style protocol that can tolerate adaptive failures. We also show a direct relation between resilience and message complexity, demonstrating that gossip protocols which tolerate a large number of adaptive failures need to use a super-linear number of messages with high probability. For oblivious failures, we present a new gossip protocol, CoordinatedGossip, that achieves optimal O(n) message complexity. This protocol makes novel use of the universe reduction technique to limit the message complexity."}],"oa_version":"None","publist_id":"6901","alternative_title":["LNCS"],"day":"01","extern":"1","status":"public","type":"conference"},{"date_created":"2018-12-11T11:48:20Z","date_updated":"2023-02-23T13:10:56Z","date_published":"2010-01-01T00:00:00Z","publisher":"ACM","author":[{"last_name":"Alistarh","orcid":"0000-0003-3650-940X","first_name":"Dan-Adrian","full_name":"Alistarh, Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Gilbert","full_name":"Gilbert, Seth","first_name":"Seth"},{"last_name":"Guerraoui","first_name":"Rachid","full_name":"Guerraoui, Rachid"},{"last_name":"Milošević","first_name":"Žarko","full_name":"Milošević, Žarko"},{"last_name":"Newport","first_name":"Calvin","full_name":"Newport, Calvin"}],"publist_id":"6902","oa_version":"None","abstract":[{"lang":"eng","text":"This paper studies non-cryptographic authenticated broadcast in radio networks subject to malicious failures. We introduce two protocols that address this problem. The first, NeighborWatchRB, makes use of a novel strategy in which honest devices monitor their neighbors for malicious behavior. Second, we present a more robust variant, MultiPathRB, that tolerates the maximum possible density of malicious devices per region, using an elaborate voting strategy. We also introduce a new proof technique to show that both protocols ensure asymptotically optimal running time. We demonstrate the fault tolerance of our protocols through extensive simulation. Simulations show the practical superiority of the NeighborWatchRB protocol (an advantage hidden in the constants of the asymptotic complexity). The NeighborWatchRB protocol even performs relatively well when compared to the simple, fast epidemic protocols commonly used in the radio setting, protocols that tolerate no malicious faults. We therefore believe that the overhead for ensuring authenticated broadcast is reasonable, especially in applications that use authenticated broadcast only when necessary, such as distributing an authenticated digest."}],"type":"conference","status":"public","day":"01","extern":"1","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"50 - 59","publication_status":"published","year":"2010","doi":"10.1145/1810479.1810489","language":[{"iso":"eng"}],"_id":"756","title":"Securing every bit: Authenticated broadcast in radio networks","article_processing_charge":"No","citation":{"apa":"Alistarh, D.-A., Gilbert, S., Guerraoui, R., Milošević, Ž., &#38; Newport, C. (2010). Securing every bit: Authenticated broadcast in radio networks (pp. 50–59). Presented at the SPAA: Symposium on Parallelism in Algorithms and Architectures, ACM. <a href=\"https://doi.org/10.1145/1810479.1810489\">https://doi.org/10.1145/1810479.1810489</a>","mla":"Alistarh, Dan-Adrian, et al. <i>Securing Every Bit: Authenticated Broadcast in Radio Networks</i>. ACM, 2010, pp. 50–59, doi:<a href=\"https://doi.org/10.1145/1810479.1810489\">10.1145/1810479.1810489</a>.","ista":"Alistarh D-A, Gilbert S, Guerraoui R, Milošević Ž, Newport C. 2010. Securing every bit: Authenticated broadcast in radio networks. SPAA: Symposium on Parallelism in Algorithms and Architectures, 50–59.","short":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, Ž. Milošević, C. Newport, in:, ACM, 2010, pp. 50–59.","ama":"Alistarh D-A, Gilbert S, Guerraoui R, Milošević Ž, Newport C. Securing every bit: Authenticated broadcast in radio networks. In: ACM; 2010:50-59. doi:<a href=\"https://doi.org/10.1145/1810479.1810489\">10.1145/1810479.1810489</a>","ieee":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, Ž. Milošević, and C. Newport, “Securing every bit: Authenticated broadcast in radio networks,” presented at the SPAA: Symposium on Parallelism in Algorithms and Architectures, 2010, pp. 50–59.","chicago":"Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, Žarko Milošević, and Calvin Newport. “Securing Every Bit: Authenticated Broadcast in Radio Networks,” 50–59. ACM, 2010. <a href=\"https://doi.org/10.1145/1810479.1810489\">https://doi.org/10.1145/1810479.1810489</a>."},"conference":{"name":"SPAA: Symposium on Parallelism in Algorithms and Architectures"},"acknowledgement":"The authors would like to thank Prof. Guevara Noubir for his useful comments on earlier\r\ndrafts of this paper."},{"conference":{"name":"DISC: Distributed Computing"},"citation":{"ama":"Alistarh D-A, Gilbert S, Guerraoui R, Travers C. Brief announcement: New bounds for partially synchronous set agreement. In: Vol 6343 LNCS. Springer; 2010:404-405. doi:<a href=\"https://doi.org/10.1007/978-3-642-15763-9_40\">10.1007/978-3-642-15763-9_40</a>","ieee":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, “Brief announcement: New bounds for partially synchronous set agreement,” presented at the DISC: Distributed Computing, 2010, vol. 6343 LNCS, pp. 404–405.","chicago":"Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, and Corentin Travers. “Brief Announcement: New Bounds for Partially Synchronous Set Agreement,” 6343 LNCS:404–5. Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-15763-9_40\">https://doi.org/10.1007/978-3-642-15763-9_40</a>.","apa":"Alistarh, D.-A., Gilbert, S., Guerraoui, R., &#38; Travers, C. (2010). Brief announcement: New bounds for partially synchronous set agreement (Vol. 6343 LNCS, pp. 404–405). Presented at the DISC: Distributed Computing, Springer. <a href=\"https://doi.org/10.1007/978-3-642-15763-9_40\">https://doi.org/10.1007/978-3-642-15763-9_40</a>","mla":"Alistarh, Dan-Adrian, et al. <i>Brief Announcement: New Bounds for Partially Synchronous Set Agreement</i>. Vol. 6343 LNCS, Springer, 2010, pp. 404–05, doi:<a href=\"https://doi.org/10.1007/978-3-642-15763-9_40\">10.1007/978-3-642-15763-9_40</a>.","short":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, C. Travers, in:, Springer, 2010, pp. 404–405.","ista":"Alistarh D-A, Gilbert S, Guerraoui R, Travers C. 2010. Brief announcement: New bounds for partially synchronous set agreement. DISC: Distributed Computing, LNCS, vol. 6343 LNCS, 404–405."},"_id":"758","volume":"6343 LNCS","article_processing_charge":"No","title":"Brief announcement: New bounds for partially synchronous set agreement","publication_status":"published","year":"2010","language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-15763-9_40","page":"404 - 405","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","extern":"1","day":"01","alternative_title":["LNCS"],"type":"conference","status":"public","abstract":[{"lang":"eng","text":"Set agreement [4] is a fundamental problem in distributed computing, in which processes collectively choose a small subset of values from a larger set of proposals. Set agreement has been extensively studied in both synchronous and asynchronous systems [10,11,3,5,8,9]. Real world distributed systems, however, are neither purely synchronous nor purely asynchronous. To describe such a system, Dwork et al. [6] introduced the idea of partial synchrony. They assume for every execution some (unknown) time GST (global stabilization time), after which the system is synchronous. In a recent paper [1,2], we study the complexity of set agreement in the context of partially synchronous systems, determining the minimum-sized window of synchrony in which set agreement can be solved. We show that at least ⌊t/k⌋ + 2 synchronous rounds are required for k-set agreement, where t &lt; n is the number of crashes, and k is the agreement parameter of the set agreement task. We then introduce an algorithm that terminates in any window of synchrony of size at least ⌊t/k⌋ + 4 rounds. Together, these results tightly bound the inherent price of tolerating some asynchrony."}],"publist_id":"6899","oa_version":"None","publisher":"Springer","author":[{"first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X","last_name":"Alistarh"},{"full_name":"Gilbert, Seth","first_name":"Seth","last_name":"Gilbert"},{"last_name":"Guerraoui","full_name":"Guerraoui, Rachid","first_name":"Rachid"},{"last_name":"Travers","first_name":"Corentin","full_name":"Travers, Corentin"}],"date_published":"2010-01-01T00:00:00Z","date_created":"2018-12-11T11:48:21Z","date_updated":"2023-02-23T13:11:26Z"},{"citation":{"apa":"Sweeney, L. B., &#38; Luo, L. (2010). ‘Fore brain: A hint of the ancestral cortex. <i>Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cell.2010.08.024\">https://doi.org/10.1016/j.cell.2010.08.024</a>","mla":"Sweeney, Lora B., and Liqun Luo. “‘Fore Brain: A Hint of the Ancestral Cortex.” <i>Cell</i>, vol. 142, no. 5, Elsevier, 2010, pp. 679–81, doi:<a href=\"https://doi.org/10.1016/j.cell.2010.08.024\">10.1016/j.cell.2010.08.024</a>.","short":"L.B. Sweeney, L. Luo, Cell 142 (2010) 679–681.","ista":"Sweeney LB, Luo L. 2010. ‘Fore brain: A hint of the ancestral cortex. Cell. 142(5), 679–681.","ama":"Sweeney LB, Luo L. ‘Fore brain: A hint of the ancestral cortex. <i>Cell</i>. 2010;142(5):679-681. doi:<a href=\"https://doi.org/10.1016/j.cell.2010.08.024\">10.1016/j.cell.2010.08.024</a>","ieee":"L. B. Sweeney and L. Luo, “‘Fore brain: A hint of the ancestral cortex,” <i>Cell</i>, vol. 142, no. 5. Elsevier, pp. 679–681, 2010.","chicago":"Sweeney, Lora B., and Liqun Luo. “‘Fore Brain: A Hint of the Ancestral Cortex.” <i>Cell</i>. Elsevier, 2010. <a href=\"https://doi.org/10.1016/j.cell.2010.08.024\">https://doi.org/10.1016/j.cell.2010.08.024</a>."},"doi":"10.1016/j.cell.2010.08.024","language":[{"iso":"eng"}],"publication_status":"published","year":"2010","publication_identifier":{"issn":["0092-8674"]},"title":"‘Fore brain: A hint of the ancestral cortex","_id":"7703","article_processing_charge":"No","volume":142,"publication":"Cell","page":"679-681","article_type":"original","month":"09","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","status":"public","extern":"1","day":"03","oa_version":"None","abstract":[{"text":"By combining gene expression profiling with image registration, Tomer et al. (2010) find that the mushroom body of the segmented worm Platynereis dumerilii shares many features with the mammalian cerebral cortex. The authors propose that the mushroom body and cortex evolved from the same structure in the common ancestor of vertebrates and invertebrates.","lang":"eng"}],"date_published":"2010-09-03T00:00:00Z","quality_controlled":"1","author":[{"last_name":"Sweeney","orcid":"0000-0001-9242-5601","first_name":"Lora Beatrice Jaeger","id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","full_name":"Sweeney, Lora Beatrice Jaeger"},{"first_name":"Liqun","full_name":"Luo, Liqun","last_name":"Luo"}],"publisher":"Elsevier","issue":"5","date_updated":"2024-01-31T10:14:59Z","intvolume":"       142","date_created":"2020-04-30T10:36:52Z"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","series_title":"FRONTCOLL","acknowledgement":"This work was supported by the EU grants “BrainCom” (FP6-2004-Mobility-5 Grant No 024259) and “Multi-adaptive BCI” (MEIF-CT-2006 Grant No 040666). Furthermore, we thank Matthias Krauledat for fruitful discussions and tools for generating Fig. 5.","citation":{"ama":"Schlögl A, Vidaurre C, Müller K-R. Adaptive Methods in BCI Research - An Introductory Tutorial. In: Graimann B, Pfurtscheller G, Allison B, eds. <i>Brain-Computer Interfaces</i>. 1st ed. FRONTCOLL. Berlin, Heidelberg: Springer; 2010:331-355. doi:<a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">10.1007/978-3-642-02091-9_18</a>","ieee":"A. Schlögl, C. Vidaurre, and K.-R. Müller, “Adaptive Methods in BCI Research - An Introductory Tutorial,” in <i>Brain-Computer Interfaces</i>, 1st ed., B. Graimann, G. Pfurtscheller, and B. Allison, Eds. Berlin, Heidelberg: Springer, 2010, pp. 331–355.","chicago":"Schlögl, Alois, Carmen Vidaurre, and Klaus-Robert Müller. “Adaptive Methods in BCI Research - An Introductory Tutorial.” In <i>Brain-Computer Interfaces</i>, edited by Bernhard Graimann, Gert Pfurtscheller, and Brendan Allison, 1st ed., 331–55. FRONTCOLL. Berlin, Heidelberg: Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">https://doi.org/10.1007/978-3-642-02091-9_18</a>.","ista":"Schlögl A, Vidaurre C, Müller K-R. 2010.Adaptive Methods in BCI Research - An Introductory Tutorial. In: Brain-Computer Interfaces. The Frontiers Collection, , 331–355.","short":"A. Schlögl, C. Vidaurre, K.-R. Müller, in:, B. Graimann, G. Pfurtscheller, B. Allison (Eds.), Brain-Computer Interfaces, 1st ed., Springer, Berlin, Heidelberg, 2010, pp. 331–355.","apa":"Schlögl, A., Vidaurre, C., &#38; Müller, K.-R. (2010). Adaptive Methods in BCI Research - An Introductory Tutorial. In B. Graimann, G. Pfurtscheller, &#38; B. Allison (Eds.), <i>Brain-Computer Interfaces</i> (1st ed., pp. 331–355). Berlin, Heidelberg: Springer. <a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">https://doi.org/10.1007/978-3-642-02091-9_18</a>","mla":"Schlögl, Alois, et al. “Adaptive Methods in BCI Research - An Introductory Tutorial.” <i>Brain-Computer Interfaces</i>, edited by Bernhard Graimann et al., 1st ed., Springer, 2010, pp. 331–55, doi:<a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">10.1007/978-3-642-02091-9_18</a>."},"title":"Adaptive Methods in BCI Research - An Introductory Tutorial","article_processing_charge":"No","publication":"Brain-Computer Interfaces","_id":"14983","publication_status":"published","doi":"10.1007/978-3-642-02091-9_18","author":[{"last_name":"Schlögl","orcid":"0000-0002-5621-8100","first_name":"Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","full_name":"Schlögl, Alois"},{"last_name":"Vidaurre","first_name":"Carmen","full_name":"Vidaurre, Carmen"},{"full_name":"Müller, Klaus-Robert","first_name":"Klaus-Robert","last_name":"Müller"}],"date_published":"2010-09-06T00:00:00Z","date_updated":"2024-02-19T09:47:25Z","editor":[{"last_name":"Graimann","first_name":"Bernhard","full_name":"Graimann, Bernhard"},{"last_name":"Pfurtscheller","full_name":"Pfurtscheller, Gert","first_name":"Gert"},{"first_name":"Brendan","full_name":"Allison, Brendan","last_name":"Allison"}],"alternative_title":["The Frontiers Collection"],"edition":"1","place":"Berlin, Heidelberg","oa_version":"None","page":"331-355","department":[{"_id":"ScienComp"}],"month":"09","publication_identifier":{"isbn":["9783642020902"],"eisbn":["9783642020919"],"issn":["1612-3018"]},"year":"2010","language":[{"iso":"eng"}],"publisher":"Springer","quality_controlled":"1","date_created":"2024-02-14T09:56:00Z","day":"06","type":"book_chapter","status":"public","abstract":[{"text":"This chapter tackles a difficult challenge: presenting signal processing material to non-experts. This chapter is meant to be comprehensible to people who have some math background, including a course in linear algebra and basic statistics, but do not specialize in mathematics, engineering, or related fields. Some formulas assume the reader is familiar with matrices and basic matrix operations, but not more advanced material. Furthermore, we tried to make the chapter readable even if you skip the formulas. Nevertheless, we include some simple methods to demonstrate the basics of adaptive data processing, then we proceed with some advanced methods that are fundamental in adaptive signal processing, and are likely to be useful in a variety of applications. The advanced algorithms are also online available [30]. In the second part, these techniques are applied to some real-world BCI data.","lang":"eng"}]},{"acknowledgement":"AK is funded by a Marie Curie fellowship. JB is funded by the MRC (UK). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript","citation":{"ista":"Kicheva A, Briscoe J. 2010. Limbs made to measure. PLoS Biology. 8(7).","short":"A. Kicheva, J. Briscoe, PLoS Biology 8 (2010).","mla":"Kicheva, Anna, and James Briscoe. “Limbs Made to Measure.” <i>PLoS Biology</i>, vol. 8, no. 7, Public Library of Science, 2010, doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000421\">10.1371/journal.pbio.1000421</a>.","apa":"Kicheva, A., &#38; Briscoe, J. (2010). Limbs made to measure. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.1000421\">https://doi.org/10.1371/journal.pbio.1000421</a>","chicago":"Kicheva, Anna, and James Briscoe. “Limbs Made to Measure.” <i>PLoS Biology</i>. Public Library of Science, 2010. <a href=\"https://doi.org/10.1371/journal.pbio.1000421\">https://doi.org/10.1371/journal.pbio.1000421</a>.","ieee":"A. Kicheva and J. Briscoe, “Limbs made to measure,” <i>PLoS Biology</i>, vol. 8, no. 7. Public Library of Science, 2010.","ama":"Kicheva A, Briscoe J. Limbs made to measure. <i>PLoS Biology</i>. 2010;8(7). doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000421\">10.1371/journal.pbio.1000421</a>"},"publication":"PLoS Biology","_id":"1721","title":"Limbs made to measure","volume":8,"doi":"10.1371/journal.pbio.1000421","year":"2010","publication_status":"published","month":"07","extern":1,"day":"01","type":"journal_article","status":"public","publist_id":"5407","quality_controlled":0,"author":[{"last_name":"Kicheva","orcid":"0000-0003-4509-4998","first_name":"Anna","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","full_name":"Anna Kicheva"},{"first_name":"James","full_name":"Briscoe, James","last_name":"Briscoe"}],"publisher":"Public Library of Science","date_published":"2010-07-01T00:00:00Z","date_updated":"2021-01-12T06:52:45Z","date_created":"2018-12-11T11:53:39Z","intvolume":"         8","issue":"7"},{"month":"06","publication_status":"published","year":"2010","doi":"10.1371/journal.pbio.1000382","title":"Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog","_id":"1722","volume":8,"publication":"PLoS Biology","citation":{"ama":"Dessaud É, Ribes V, Balaskas N, et al. Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog. <i>PLoS Biology</i>. 2010;8(6). doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000382\">10.1371/journal.pbio.1000382</a>","ieee":"É. Dessaud <i>et al.</i>, “Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog,” <i>PLoS Biology</i>, vol. 8, no. 6. Public Library of Science, 2010.","chicago":"Dessaud, Éric, Vanessa Ribes, Nikolaos Balaskas, Linlin Yang, Alessandra Pierani, Anna Kicheva, Bennett Novitch, James Briscoe, and Noriaki Sasai. “Dynamic Assignment and Maintenance of Positional Identity in the Ventral Neural Tube by the Morphogen Sonic Hedgehog.” <i>PLoS Biology</i>. Public Library of Science, 2010. <a href=\"https://doi.org/10.1371/journal.pbio.1000382\">https://doi.org/10.1371/journal.pbio.1000382</a>.","short":"É. Dessaud, V. Ribes, N. Balaskas, L. Yang, A. Pierani, A. Kicheva, B. Novitch, J. Briscoe, N. Sasai, PLoS Biology 8 (2010).","ista":"Dessaud É, Ribes V, Balaskas N, Yang L, Pierani A, Kicheva A, Novitch B, Briscoe J, Sasai N. 2010. Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog. PLoS Biology. 8(6).","apa":"Dessaud, É., Ribes, V., Balaskas, N., Yang, L., Pierani, A., Kicheva, A., … Sasai, N. (2010). Dynamic assignment and maintenance of positional identity in the ventral neural tube by the morphogen sonic hedgehog. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.1000382\">https://doi.org/10.1371/journal.pbio.1000382</a>","mla":"Dessaud, Éric, et al. “Dynamic Assignment and Maintenance of Positional Identity in the Ventral Neural Tube by the Morphogen Sonic Hedgehog.” <i>PLoS Biology</i>, vol. 8, no. 6, Public Library of Science, 2010, doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000382\">10.1371/journal.pbio.1000382</a>."},"acknowledgement":"NS was supported by a Marie Curie Fellowship (PIIF-GA-2008-219939) and the Mochida Memorial Foundation for Medical and Pharmaceutical Research. Support for VR was provided by an EMBO LTF, for AK by a FEBS LTF. ED was supported by the Wellcome Trust (#080630). Work in the lab of JB is supported by the Medical Research Council (UK). AP is a CNRS (Centre National de la Recherche Scientifique) Investigator. This work was supported by grants from the Ministère de la Recherche (ACI Grant #0220575) and the Association pour la Recherche sur le Cancer (Grant #4679) to AP. BGN was supported by grants from the Whitehall Foundation (2004-05-90-APL), the March of Dimes Foundation (5-FY2006-281), the Muscular Dystrophy Association (92901), and the NINDS (NS053976)","issue":"6","date_created":"2018-12-11T11:53:39Z","intvolume":"         8","date_updated":"2021-01-12T06:52:46Z","date_published":"2010-06-01T00:00:00Z","quality_controlled":0,"author":[{"last_name":"Dessaud","full_name":"Dessaud, Éric","first_name":"Éric"},{"full_name":"Ribes, Vanessa","first_name":"Vanessa","last_name":"Ribes"},{"last_name":"Balaskas","full_name":"Balaskas, Nikolaos","first_name":"Nikolaos"},{"first_name":"Linlin","full_name":"Yang, Linlin","last_name":"Yang"},{"full_name":"Pierani, Alessandra","first_name":"Alessandra","last_name":"Pierani"},{"id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","first_name":"Anna","full_name":"Anna Kicheva","last_name":"Kicheva","orcid":"0000-0003-4509-4998"},{"first_name":"Bennett","full_name":"Novitch, Bennett","last_name":"Novitch"},{"first_name":"James","full_name":"Briscoe, James","last_name":"Briscoe"},{"first_name":"Noriaki","full_name":"Sasai, Noriaki","last_name":"Sasai"}],"publisher":"Public Library of Science","publist_id":"5408","abstract":[{"text":"Morphogens are secreted signalling molecules that act in a graded manner to control the pattern of cellular differentiation in developing tissues. An example is Sonic hedgehog (Shh), which acts in several developing vertebrate tissues, including the central nervous system, to provide positional information during embryonic patterning. Here we address how Shh signalling assigns the positional identities of distinct neuronal subtype progenitors throughout the ventral neural tube. Assays of intracellular signal transduction and gene expression indicate that the duration as well as level of signalling is critical for morphogen interpretation. Progenitors of the ventral neuronal subtypes are established sequentially, with progressively more ventral identities requiring correspondingly higher levels and longer periods of Shh signalling. Moreover, cells remain sensitive to changes in Shh signalling for an extended time, reverting to antecedent identities if signalling levels fall below a threshold. Thus, the duration of signalling is important not only for the assignment but also for the refinement and maintenance of positional identity. Together the data suggest a dynamic model for ventral neural tube patterning in which positional information corresponds to the time integral of Shh signalling. This suggests an alternative to conventional models of morphogen action that rely solely on the level of signalling.","lang":"eng"}],"status":"public","type":"journal_article","extern":1,"day":"01"},{"month":"06","main_file_link":[{"url":"http://arxiv.org/abs/1005.1816","open_access":"1"}],"page":"458 - 464","_id":"1752","volume":5,"title":"Hybrid superconductor-semiconductor devices made from self-assembled SiGe nanocrystals on silicon","publication":"Nature Nanotechnology","year":"2010","publication_status":"published","doi":"10.1038/nnano.2010.84","acknowledgement":"We also acknowledge support from the Agence Nationale de la Recherche (through the ACCESS and COHESION projects). G.K. acknowledges further support from the Deutsche Forschungsgemeinschaft (grant no. KA 2922/1-1)","oa":1,"citation":{"ama":"Katsaros G, Spathis P, Stoffel M, et al. Hybrid superconductor-semiconductor devices made from self-assembled SiGe nanocrystals on silicon. <i>Nature Nanotechnology</i>. 2010;5(6):458-464. doi:<a href=\"https://doi.org/10.1038/nnano.2010.84\">10.1038/nnano.2010.84</a>","ieee":"G. Katsaros <i>et al.</i>, “Hybrid superconductor-semiconductor devices made from self-assembled SiGe nanocrystals on silicon,” <i>Nature Nanotechnology</i>, vol. 5, no. 6. Nature Publishing Group, pp. 458–464, 2010.","chicago":"Katsaros, Georgios, Panayotis Spathis, Mathieu Stoffel, Frank Fournel, Massimo Mongillo, Vincent Bouchiat, François Lefloch, Armando Rastelli, Oliver Schmidt, and Silvano De Franceschi. “Hybrid Superconductor-Semiconductor Devices Made from Self-Assembled SiGe Nanocrystals on Silicon.” <i>Nature Nanotechnology</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nnano.2010.84\">https://doi.org/10.1038/nnano.2010.84</a>.","short":"G. Katsaros, P. Spathis, M. Stoffel, F. Fournel, M. Mongillo, V. Bouchiat, F. Lefloch, A. Rastelli, O. Schmidt, S. De Franceschi, Nature Nanotechnology 5 (2010) 458–464.","ista":"Katsaros G, Spathis P, Stoffel M, Fournel F, Mongillo M, Bouchiat V, Lefloch F, Rastelli A, Schmidt O, De Franceschi S. 2010. Hybrid superconductor-semiconductor devices made from self-assembled SiGe nanocrystals on silicon. Nature Nanotechnology. 5(6), 458–464.","apa":"Katsaros, G., Spathis, P., Stoffel, M., Fournel, F., Mongillo, M., Bouchiat, V., … De Franceschi, S. (2010). Hybrid superconductor-semiconductor devices made from self-assembled SiGe nanocrystals on silicon. <i>Nature Nanotechnology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nnano.2010.84\">https://doi.org/10.1038/nnano.2010.84</a>","mla":"Katsaros, Georgios, et al. “Hybrid Superconductor-Semiconductor Devices Made from Self-Assembled SiGe Nanocrystals on Silicon.” <i>Nature Nanotechnology</i>, vol. 5, no. 6, Nature Publishing Group, 2010, pp. 458–64, doi:<a href=\"https://doi.org/10.1038/nnano.2010.84\">10.1038/nnano.2010.84</a>."},"date_created":"2018-12-11T11:53:49Z","intvolume":"         5","date_updated":"2021-01-12T06:52:59Z","issue":"6","publisher":"Nature Publishing Group","author":[{"first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Georgios Katsaros","last_name":"Katsaros"},{"last_name":"Spathis","full_name":"Spathis, Panayotis N","first_name":"Panayotis"},{"last_name":"Stoffel","first_name":"Mathieu","full_name":"Stoffel, Mathieu"},{"full_name":"Fournel, Frank","first_name":"Frank","last_name":"Fournel"},{"last_name":"Mongillo","full_name":"Mongillo, Massimo","first_name":"Massimo"},{"last_name":"Bouchiat","first_name":"Vincent","full_name":"Bouchiat, Vincent"},{"last_name":"Lefloch","full_name":"Lefloch, François","first_name":"François"},{"first_name":"Armando","full_name":"Rastelli, Armando","last_name":"Rastelli"},{"first_name":"Oliver","full_name":"Schmidt, Oliver G","last_name":"Schmidt"},{"first_name":"Silvano","full_name":"De Franceschi, Silvano","last_name":"De Franceschi"}],"quality_controlled":0,"date_published":"2010-06-01T00:00:00Z","abstract":[{"text":"The epitaxial growth of germanium on silicon leads to the self-assembly of SiGe nanocrystals by a process that allows the size, composition and position of the nanocrystals to be controlled. This level of control, combined with an inherent compatibility with silicon technology, could prove useful in nanoelectronic applications. Here, we report the confinement of holes in quantum-dot devices made by directly contacting individual SiGe nanocrystals with aluminium electrodes, and the production of hybrid superconductor- semiconductor devices, such as resonant supercurrent transistors, when the quantum dot is strongly coupled to the electrodes. Charge transport measurements on weakly coupled quantum dots reveal discrete energy spectra, with the confined hole states displaying anisotropic gyromagnetic factors and strong spin-orbit coupling with pronounced dependences on gate voltage and magnetic field.","lang":"eng"}],"publist_id":"5372","extern":1,"day":"01","type":"journal_article","status":"public"},{"date_updated":"2021-01-12T06:52:59Z","date_created":"2018-12-11T11:53:49Z","intvolume":"        10","issue":"9","author":[{"first_name":"Rudeeson","full_name":"Songmuang, Rudeeson","last_name":"Songmuang"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Georgios Katsaros","first_name":"Georgios","last_name":"Katsaros"},{"last_name":"Monroy","first_name":"Eva","full_name":"Monroy, Eva"},{"first_name":"Panayotis","full_name":"Spathis, Panayotis N","last_name":"Spathis"},{"first_name":"Catherine","full_name":"Bougerol, Catherine","last_name":"Bougerol"},{"first_name":"Massimo","full_name":"Mongillo, Massimo","last_name":"Mongillo"},{"full_name":"De Franceschi, Silvano","first_name":"Silvano","last_name":"De Franceschi"}],"quality_controlled":0,"publisher":"American Chemical Society","date_published":"2010-09-08T00:00:00Z","abstract":[{"text":"We investigate electronic transport in n-i-n GaN nanowires with and without AlN double barriers. The nanowires are grown by catalyst-free, plasma-assisted molecular beam epitaxy enabling abrupt GaN/AlN interfaces as well as longitudinal n-type doping modulation. At low temperature, transport in n-i-n GaN nanowires is dominated by the Coulomb blockade effect. Carriers are confined in the undoped middle region, forming single or multiple islands with a characteristic length of ∼100 nm. The incorporation of two AlN tunnel barriers causes confinement to occur within the GaN dot in between. In the case of a 6 nm thick dot and 2 nm thick barriers, we observe characteristic signatures of Coulomb-blockaded transport in single quantum dots with discrete energy states. For thinner dots and barriers, Coulomb-blockade effects do not play a significant role while the onset of resonant tunneling via the confined quantum levels is accompanied by a negative differential resistance surviving up to ∼150 K.","lang":"eng"}],"publist_id":"5371","day":"08","extern":1,"type":"journal_article","status":"public","main_file_link":[{"url":"http://arxiv.org/abs/1005.3637","open_access":"1"}],"month":"09","page":"3545 - 3550","volume":10,"_id":"1753","title":"Quantum transport in GaN/AlN double-barrier heterostructure nanowires","publication":"Nano Letters","doi":"10.1021/nl1017578","publication_status":"published","year":"2010","oa":1,"acknowledgement":"This research was partly funded by the Agence Nationale de la Recherche through the COHESION project. G.K. acknowledges further support from the Deutsche Forschungsgemeinschaft (Grant KA 2922/1-1)","citation":{"ieee":"R. Songmuang <i>et al.</i>, “Quantum transport in GaN/AlN double-barrier heterostructure nanowires,” <i>Nano Letters</i>, vol. 10, no. 9. American Chemical Society, pp. 3545–3550, 2010.","ama":"Songmuang R, Katsaros G, Monroy E, et al. Quantum transport in GaN/AlN double-barrier heterostructure nanowires. <i>Nano Letters</i>. 2010;10(9):3545-3550. doi:<a href=\"https://doi.org/10.1021/nl1017578\">10.1021/nl1017578</a>","chicago":"Songmuang, Rudeeson, Georgios Katsaros, Eva Monroy, Panayotis Spathis, Catherine Bougerol, Massimo Mongillo, and Silvano De Franceschi. “Quantum Transport in GaN/AlN Double-Barrier Heterostructure Nanowires.” <i>Nano Letters</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/nl1017578\">https://doi.org/10.1021/nl1017578</a>.","ista":"Songmuang R, Katsaros G, Monroy E, Spathis P, Bougerol C, Mongillo M, De Franceschi S. 2010. Quantum transport in GaN/AlN double-barrier heterostructure nanowires. Nano Letters. 10(9), 3545–3550.","short":"R. Songmuang, G. Katsaros, E. Monroy, P. Spathis, C. Bougerol, M. Mongillo, S. De Franceschi, Nano Letters 10 (2010) 3545–3550.","apa":"Songmuang, R., Katsaros, G., Monroy, E., Spathis, P., Bougerol, C., Mongillo, M., &#38; De Franceschi, S. (2010). Quantum transport in GaN/AlN double-barrier heterostructure nanowires. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nl1017578\">https://doi.org/10.1021/nl1017578</a>","mla":"Songmuang, Rudeeson, et al. “Quantum Transport in GaN/AlN Double-Barrier Heterostructure Nanowires.” <i>Nano Letters</i>, vol. 10, no. 9, American Chemical Society, 2010, pp. 3545–50, doi:<a href=\"https://doi.org/10.1021/nl1017578\">10.1021/nl1017578</a>."}},{"month":"03","title":"Cavity quantum electrodynamics with separate photon storage and qubit readout modes","_id":"1772","volume":104,"publication":"Physical Review Letters","year":"2010","publication_status":"published","doi":"10.1103/PhysRevLett.104.100504","acknowledgement":"This work was supported financially by the Swiss National Science Foundation, by the EC via the EuroSQIP project and by ETH Zurich","citation":{"apa":"Leek, P., Baur, M., Fink, J. M., Bianchetti, R., Steffen, L., Filipp, S., &#38; Wallraff, A. (2010). Cavity quantum electrodynamics with separate photon storage and qubit readout modes. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.104.100504\">https://doi.org/10.1103/PhysRevLett.104.100504</a>","mla":"Leek, Peter, et al. “Cavity Quantum Electrodynamics with Separate Photon Storage and Qubit Readout Modes.” <i>Physical Review Letters</i>, vol. 104, no. 10, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.100504\">10.1103/PhysRevLett.104.100504</a>.","short":"P. Leek, M. Baur, J.M. Fink, R. Bianchetti, L. Steffen, S. Filipp, A. Wallraff, Physical Review Letters 104 (2010).","ista":"Leek P, Baur M, Fink JM, Bianchetti R, Steffen L, Filipp S, Wallraff A. 2010. Cavity quantum electrodynamics with separate photon storage and qubit readout modes. Physical Review Letters. 104(10).","chicago":"Leek, Peter, Matthias Baur, Johannes M Fink, R Bianchetti, L. Steffen, Stefan Filipp, and Andreas Wallraff. “Cavity Quantum Electrodynamics with Separate Photon Storage and Qubit Readout Modes.” <i>Physical Review Letters</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/PhysRevLett.104.100504\">https://doi.org/10.1103/PhysRevLett.104.100504</a>.","ama":"Leek P, Baur M, Fink JM, et al. Cavity quantum electrodynamics with separate photon storage and qubit readout modes. <i>Physical Review Letters</i>. 2010;104(10). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.100504\">10.1103/PhysRevLett.104.100504</a>","ieee":"P. Leek <i>et al.</i>, “Cavity quantum electrodynamics with separate photon storage and qubit readout modes,” <i>Physical Review Letters</i>, vol. 104, no. 10. American Physical Society, 2010."},"date_created":"2018-12-11T11:53:55Z","intvolume":"       104","date_updated":"2021-01-12T06:53:06Z","issue":"10","author":[{"last_name":"Leek","full_name":"Leek, Peter J","first_name":"Peter"},{"last_name":"Baur","full_name":"Baur, Matthias P","first_name":"Matthias"},{"full_name":"Johannes Fink","first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","last_name":"Fink"},{"full_name":"Bianchetti, R","first_name":"R","last_name":"Bianchetti"},{"full_name":"Steffen, L. Kraig","first_name":"L.","last_name":"Steffen"},{"last_name":"Filipp","first_name":"Stefan","full_name":"Filipp, Stefan"},{"last_name":"Wallraff","full_name":"Wallraff, Andreas","first_name":"Andreas"}],"quality_controlled":0,"publisher":"American Physical Society","date_published":"2010-03-10T00:00:00Z","abstract":[{"lang":"eng","text":"We present the realization of a cavity quantum electrodynamics setup in which photons of strongly different lifetimes are engineered in different harmonic modes of the same cavity. We achieve this in a superconducting transmission line resonator with superconducting qubits coupled to the different modes. One cavity mode is strongly coupled to a detection line for qubit state readout, while a second long lifetime mode is used for photon storage and coherent quantum operations. We demonstrate sideband-based measurement of photon coherence, generation of n photon Fock states and the scaling of the sideband Rabi frequency with √n using a scheme that may be extended to realize sideband-based two-qubit logic gates."}],"publist_id":"5345","day":"10","extern":1,"type":"journal_article","status":"public"}]