[{"ddc":["570"],"publisher":"Institute of Science and Technology Austria","date_updated":"2023-12-21T14:30:02Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","supervisor":[{"last_name":"Sixt","full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K"}],"article_processing_charge":"No","title":"Neutrophils on the hunt: Migratory strategies employed by neutrophils to fulfill their effector function","page":"226","status":"public","project":[{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program"}],"year":"2023","date_created":"2023-12-18T19:14:28Z","has_accepted_license":"1","related_material":{"record":[{"relation":"part_of_dissertation","id":"6328","status":"public"},{"relation":"part_of_dissertation","id":"7885","status":"public"},{"relation":"part_of_dissertation","id":"12272","status":"public"},{"status":"public","relation":"part_of_dissertation","id":"14274"},{"status":"public","id":"14360","relation":"part_of_dissertation"}]},"day":"20","citation":{"short":"J.A. Stopp, Neutrophils on the Hunt: Migratory Strategies Employed by Neutrophils to Fulfill Their Effector Function, Institute of Science and Technology Austria, 2023.","apa":"Stopp, J. A. (2023). Neutrophils on the hunt: Migratory strategies employed by neutrophils to fulfill their effector function. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:14697","chicago":"Stopp, Julian A. “Neutrophils on the Hunt: Migratory Strategies Employed by Neutrophils to Fulfill Their Effector Function.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:14697.","ista":"Stopp JA. 2023. Neutrophils on the hunt: Migratory strategies employed by neutrophils to fulfill their effector function. Institute of Science and Technology Austria.","ama":"Stopp JA. Neutrophils on the hunt: Migratory strategies employed by neutrophils to fulfill their effector function. 2023. doi:10.15479/at:ista:14697","mla":"Stopp, Julian A. Neutrophils on the Hunt: Migratory Strategies Employed by Neutrophils to Fulfill Their Effector Function. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:14697.","ieee":"J. A. Stopp, “Neutrophils on the hunt: Migratory strategies employed by neutrophils to fulfill their effector function,” Institute of Science and Technology Austria, 2023."},"file":[{"embargo_to":"open_access","creator":"jstopp","file_size":51585778,"date_created":"2023-12-20T09:35:34Z","file_id":"14699","relation":"main_file","date_updated":"2023-12-20T09:35:34Z","file_name":"Thesis.pdf","content_type":"application/pdf","checksum":"457927165d5d556305d3086f6b83e5c7","access_level":"closed","embargo":"2024-12-20"},{"file_name":"Thesis.docx","date_updated":"2023-12-20T10:41:42Z","access_level":"closed","checksum":"e8d26449ac461f5e8478a62c9507506f","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","file_size":69625950,"creator":"jstopp","relation":"source_file","file_id":"14700","date_created":"2023-12-20T09:35:35Z"}],"ec_funded":1,"department":[{"_id":"GradSch"},{"_id":"MiSi"}],"author":[{"id":"489E3F00-F248-11E8-B48F-1D18A9856A87","first_name":"Julian A","last_name":"Stopp","full_name":"Stopp, Julian A"}],"oa_version":"Published Version","publication_status":"published","_id":"14697","date_published":"2023-12-20T00:00:00Z","doi":"10.15479/at:ista:14697","month":"12","file_date_updated":"2023-12-20T10:41:42Z","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2663 - 337X"],"isbn":["978-3-99078-038-1"]},"type":"dissertation","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"Bio"}],"alternative_title":["ISTA Thesis"],"degree_awarded":"PhD"},{"_id":"14701","doi":"10.1039/d3fd90062b","date_published":"2023-12-19T00:00:00Z","month":"12","publication_status":"epub_ahead","quality_controlled":"1","publication":"Faraday Discussions","day":"19","citation":{"ieee":"L. A. Archer et al., “Towards practical metal–oxygen batteries: General discussion,” Faraday Discussions. Royal Society of Chemistry, 2023.","mla":"Archer, Lynden A., et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” Faraday Discussions, Royal Society of Chemistry, 2023, doi:10.1039/d3fd90062b.","chicago":"Archer, Lynden A., Peter G. Bruce, Ernesto J. Calvo, Daniel Dewar, James H. J. Ellison, Stefan Alexander Freunberger, Xiangwen Gao, et al. “Towards Practical Metal–Oxygen Batteries: General Discussion.” Faraday Discussions. Royal Society of Chemistry, 2023. https://doi.org/10.1039/d3fd90062b.","apa":"Archer, L. A., Bruce, P. G., Calvo, E. J., Dewar, D., Ellison, J. H. J., Freunberger, S. A., … Ye, S. (2023). Towards practical metal–oxygen batteries: General discussion. Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/d3fd90062b","ama":"Archer LA, Bruce PG, Calvo EJ, et al. Towards practical metal–oxygen batteries: General discussion. Faraday Discussions. 2023. doi:10.1039/d3fd90062b","ista":"Archer LA, Bruce PG, Calvo EJ, Dewar D, Ellison JHJ, Freunberger SA, Gao X, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Menkin S, Mondal S, Qiu Q, Samarakoon T, Temprano I, Uosaki K, Vailaya G, Wachsman ED, Wu Y, Ye S. 2023. Towards practical metal–oxygen batteries: General discussion. Faraday Discussions.","short":"L.A. Archer, P.G. Bruce, E.J. Calvo, D. Dewar, J.H.J. Ellison, S.A. Freunberger, X. Gao, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Menkin, S. Mondal, Q. Qiu, T. Samarakoon, I. Temprano, K. Uosaki, G. Vailaya, E.D. Wachsman, Y. Wu, S. Ye, Faraday Discussions (2023)."},"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1364-5498"],"issn":["1359-6640"]},"keyword":["Physical and Theoretical Chemistry"],"type":"journal_article","article_processing_charge":"No","title":"Towards practical metal–oxygen batteries: General discussion","department":[{"_id":"StFr"}],"date_updated":"2023-12-20T11:54:06Z","publisher":"Royal Society of Chemistry","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","date_created":"2023-12-20T10:48:09Z","status":"public","oa_version":"None","author":[{"full_name":"Archer, Lynden A.","last_name":"Archer","first_name":"Lynden A."},{"full_name":"Bruce, Peter G.","last_name":"Bruce","first_name":"Peter G."},{"last_name":"Calvo","full_name":"Calvo, Ernesto J.","first_name":"Ernesto J."},{"last_name":"Dewar","full_name":"Dewar, Daniel","first_name":"Daniel"},{"full_name":"Ellison, James H. J.","last_name":"Ellison","first_name":"James H. J."},{"orcid":"0000-0003-2902-5319","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","first_name":"Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"last_name":"Gao","full_name":"Gao, Xiangwen","first_name":"Xiangwen"},{"first_name":"Laurence J.","full_name":"Hardwick, Laurence J.","last_name":"Hardwick"},{"first_name":"Gabriela","full_name":"Horwitz, Gabriela","last_name":"Horwitz"},{"first_name":"Jürgen","last_name":"Janek","full_name":"Janek, Jürgen"},{"last_name":"Johnson","full_name":"Johnson, Lee R.","first_name":"Lee R."},{"full_name":"Jordan, Jack W.","last_name":"Jordan","first_name":"Jack W."},{"first_name":"Shoichi","full_name":"Matsuda, Shoichi","last_name":"Matsuda"},{"full_name":"Menkin, Svetlana","last_name":"Menkin","first_name":"Svetlana"},{"first_name":"Soumyadip","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","full_name":"Mondal, Soumyadip","last_name":"Mondal"},{"full_name":"Qiu, Qianyuan","last_name":"Qiu","first_name":"Qianyuan"},{"last_name":"Samarakoon","full_name":"Samarakoon, Thukshan","first_name":"Thukshan"},{"full_name":"Temprano, Israel","last_name":"Temprano","first_name":"Israel"},{"last_name":"Uosaki","full_name":"Uosaki, Kohei","first_name":"Kohei"},{"first_name":"Ganesh","last_name":"Vailaya","full_name":"Vailaya, Ganesh"},{"last_name":"Wachsman","full_name":"Wachsman, Eric D.","first_name":"Eric D."},{"last_name":"Wu","full_name":"Wu, Yiying","first_name":"Yiying"},{"first_name":"Shen","full_name":"Ye, Shen","last_name":"Ye"}],"article_type":"review"},{"citation":{"mla":"Attard, Gary A., et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” Faraday Discussions, Royal Society of Chemistry, 2023, doi:10.1039/d3fd90059b.","ieee":"G. A. Attard et al., “Materials for stable metal–oxygen battery cathodes: general discussion,” Faraday Discussions. Royal Society of Chemistry, 2023.","short":"G.A. Attard, E.J. Calvo, L.A. Curtiss, D. Dewar, J.H.J. Ellison, X. Gao, C.P. Grey, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda, S. Mondal, A.R. Neale, N. Ortiz-Vitoriano, I. Temprano, G. Vailaya, E.D. Wachsman, H.-H. Wang, Y. Wu, S. Ye, Faraday Discussions (2023).","ista":"Attard GA, Calvo EJ, Curtiss LA, Dewar D, Ellison JHJ, Gao X, Grey CP, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Mondal S, Neale AR, Ortiz-Vitoriano N, Temprano I, Vailaya G, Wachsman ED, Wang H-H, Wu Y, Ye S. 2023. Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions.","apa":"Attard, G. A., Calvo, E. J., Curtiss, L. A., Dewar, D., Ellison, J. H. J., Gao, X., … Ye, S. (2023). Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/d3fd90059b","ama":"Attard GA, Calvo EJ, Curtiss LA, et al. Materials for stable metal–oxygen battery cathodes: general discussion. Faraday Discussions. 2023. doi:10.1039/d3fd90059b","chicago":"Attard, Gary A., Ernesto J. Calvo, Larry A. Curtiss, Daniel Dewar, James H. J. Ellison, Xiangwen Gao, Clare P. Grey, et al. “Materials for Stable Metal–Oxygen Battery Cathodes: General Discussion.” Faraday Discussions. Royal Society of Chemistry, 2023. https://doi.org/10.1039/d3fd90059b."},"day":"18","type":"journal_article","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1359-6640"],"eissn":["1364-5498"]},"keyword":["Physical and Theoretical Chemistry"],"month":"12","_id":"14702","doi":"10.1039/d3fd90059b","date_published":"2023-12-18T00:00:00Z","publication":"Faraday Discussions","publication_status":"epub_ahead","quality_controlled":"1","year":"2023","date_created":"2023-12-20T10:49:43Z","status":"public","oa_version":"None","author":[{"last_name":"Attard","full_name":"Attard, Gary A.","first_name":"Gary A."},{"first_name":"Ernesto J.","last_name":"Calvo","full_name":"Calvo, Ernesto J."},{"first_name":"Larry A.","last_name":"Curtiss","full_name":"Curtiss, Larry A."},{"first_name":"Daniel","full_name":"Dewar, Daniel","last_name":"Dewar"},{"full_name":"Ellison, James H. J.","last_name":"Ellison","first_name":"James H. J."},{"first_name":"Xiangwen","last_name":"Gao","full_name":"Gao, Xiangwen"},{"full_name":"Grey, Clare P.","last_name":"Grey","first_name":"Clare P."},{"last_name":"Hardwick","full_name":"Hardwick, Laurence J.","first_name":"Laurence J."},{"full_name":"Horwitz, Gabriela","last_name":"Horwitz","first_name":"Gabriela"},{"first_name":"Juergen","last_name":"Janek","full_name":"Janek, Juergen"},{"last_name":"Johnson","full_name":"Johnson, Lee R.","first_name":"Lee R."},{"first_name":"Jack W.","last_name":"Jordan","full_name":"Jordan, Jack W."},{"first_name":"Shoichi","last_name":"Matsuda","full_name":"Matsuda, Shoichi"},{"last_name":"Mondal","full_name":"Mondal, Soumyadip","id":"d25d21ef-dc8d-11ea-abe3-ec4576307f48","first_name":"Soumyadip"},{"last_name":"Neale","full_name":"Neale, Alex R.","first_name":"Alex R."},{"full_name":"Ortiz-Vitoriano, Nagore","last_name":"Ortiz-Vitoriano","first_name":"Nagore"},{"last_name":"Temprano","full_name":"Temprano, Israel","first_name":"Israel"},{"full_name":"Vailaya, Ganesh","last_name":"Vailaya","first_name":"Ganesh"},{"first_name":"Eric D.","full_name":"Wachsman, Eric D.","last_name":"Wachsman"},{"last_name":"Wang","full_name":"Wang, Hsien-Hau","first_name":"Hsien-Hau"},{"last_name":"Wu","full_name":"Wu, Yiying","first_name":"Yiying"},{"first_name":"Shen","full_name":"Ye, Shen","last_name":"Ye"}],"article_type":"review","article_processing_charge":"No","department":[{"_id":"StFr"}],"title":"Materials for stable metal–oxygen battery cathodes: general discussion","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-12-20T11:58:12Z","publisher":"Royal Society of Chemistry"},{"article_number":"2312.12213","article_processing_charge":"No","title":"Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation","department":[{"_id":"GradSch"},{"_id":"ChWo"}],"date_updated":"2023-12-27T13:44:33Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The authors would like to thank Chris Wojtan for his continuous support and several interesting discussions. Part of this research was performed during two visits: one of SI to the BIDSA research center at Bocconi University, and one of HL to the Institute of Science and Technology Austria. Both host institutions are warmly acknowledged for the hospital-\r\nity. HL is partially supported by the MUR-Prin 2022-202244A7YL “Gradient Flows and Non-Smooth Geometric Structures with Applications to Optimization and Machine Learning”, funded by the European Union - Next Generation EU. SI is supported in part by ERC Consolidator Grant 101045083 “CoDiNA” funded by the European Research Council.","year":"2023","date_created":"2023-12-21T10:14:37Z","project":[{"name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088","grant_number":"101045083"}],"status":"public","author":[{"id":"6F7C4B96-A8E9-11E9-A7CA-09ECE5697425","first_name":"Sadashige","last_name":"Ishida","full_name":"Ishida, Sadashige"},{"last_name":"Lavenant","full_name":"Lavenant, Hugo","first_name":"Hugo"}],"oa_version":"Preprint","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2312.12213"}],"_id":"14703","date_published":"2023-12-19T00:00:00Z","doi":"10.48550/arXiv.2312.12213","arxiv":1,"external_id":{"arxiv":["2312.12213"]},"month":"12","publication_status":"submitted","oa":1,"publication":"arXiv","day":"19","citation":{"ieee":"S. Ishida and H. Lavenant, “Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation,” arXiv. .","mla":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” ArXiv, 2312.12213, doi:10.48550/arXiv.2312.12213.","ista":"Ishida S, Lavenant H. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. arXiv, 2312.12213.","apa":"Ishida, S., & Lavenant, H. (n.d.). Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. arXiv. https://doi.org/10.48550/arXiv.2312.12213","chicago":"Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization of Dynamic Optimal Transport Using the Dual Formulation.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2312.12213.","ama":"Ishida S, Lavenant H. Quantitative convergence of a discretization of dynamic optimal transport using the dual formulation. arXiv. doi:10.48550/arXiv.2312.12213","short":"S. Ishida, H. Lavenant, ArXiv (n.d.)."},"language":[{"iso":"eng"}],"keyword":["Optimal transport","Hamilton-Jacobi equation","convex optimization"],"abstract":[{"lang":"eng","text":"We present a discretization of the dynamic optimal transport problem for which we can obtain the convergence rate for the value of the transport cost to its continuous value when the temporal and spatial stepsize vanish. This convergence result does not require any regularity assumption on the measures, though experiments suggest that the rate is not sharp. Via an analysis of the duality gap we also obtain the convergence rates for the gradient of the optimal potentials and the velocity field under mild regularity assumptions. To obtain such rates we discretize the dual formulation of the dynamic optimal transport problem and use the mature literature related to the error due to discretizing the Hamilton-Jacobi equation."}],"type":"preprint"},{"volume":74,"year":"2023","date_created":"2023-12-24T23:00:53Z","page":"6889-6892","status":"public","article_type":"original","article_processing_charge":"Yes (in subscription journal)","title":"Auxin research: Creating tools for a greener future","pmid":1,"ddc":["580"],"publisher":"Oxford University Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-02T09:29:24Z","day":"01","citation":{"short":"M. Del Bianco, J. Friml, L. Strader, S. Kepinski, Journal of Experimental Botany 74 (2023) 6889–6892.","ista":"Del Bianco M, Friml J, Strader L, Kepinski S. 2023. Auxin research: Creating tools for a greener future. Journal of Experimental Botany. 74(22), 6889–6892.","chicago":"Del Bianco, Marta, Jiří Friml, Lucia Strader, and Stefan Kepinski. “Auxin Research: Creating Tools for a Greener Future.” Journal of Experimental Botany. Oxford University Press, 2023. https://doi.org/10.1093/jxb/erad420.","ama":"Del Bianco M, Friml J, Strader L, Kepinski S. Auxin research: Creating tools for a greener future. Journal of Experimental Botany. 2023;74(22):6889-6892. doi:10.1093/jxb/erad420","apa":"Del Bianco, M., Friml, J., Strader, L., & Kepinski, S. (2023). Auxin research: Creating tools for a greener future. Journal of Experimental Botany. Oxford University Press. https://doi.org/10.1093/jxb/erad420","mla":"Del Bianco, Marta, et al. “Auxin Research: Creating Tools for a Greener Future.” Journal of Experimental Botany, vol. 74, no. 22, Oxford University Press, 2023, pp. 6889–92, doi:10.1093/jxb/erad420.","ieee":"M. Del Bianco, J. Friml, L. Strader, and S. Kepinski, “Auxin research: Creating tools for a greener future,” Journal of Experimental Botany, vol. 74, no. 22. Oxford University Press, pp. 6889–6892, 2023."},"license":"https://creativecommons.org/licenses/by/4.0/","abstract":[{"lang":"eng","text":"Amid the delays due to the global pandemic, in early October 2022, the auxin community gathered in the idyllic peninsula of Cavtat, Croatia. More than 170 scientists from across the world converged to discuss the latest advancements in fundamental and applied research in the field. The topics, from signalling and transport to plant architecture and response to the environment, show how auxin research must bridge from the molecular realm to macroscopic developmental responses. This is mirrored in this collection of reviews, contributed by participants of the Auxin 2022 meeting."}],"has_accepted_license":"1","scopus_import":"1","author":[{"first_name":"Marta","full_name":"Del Bianco, Marta","last_name":"Del Bianco"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","last_name":"Friml","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Lucia","last_name":"Strader","full_name":"Strader, Lucia"},{"first_name":"Stefan","full_name":"Kepinski, Stefan","last_name":"Kepinski"}],"oa_version":"Published Version","file":[{"relation":"main_file","file_id":"14724","date_created":"2024-01-02T09:23:57Z","creator":"dernst","file_size":425194,"success":1,"content_type":"application/pdf","checksum":"f66fb960fd791dea53fd0e087f2fbbe8","access_level":"open_access","file_name":"2023_JourExperimentalBotany_DelBianco.pdf","date_updated":"2024-01-02T09:23:57Z"}],"department":[{"_id":"JiFr"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"publication_identifier":{"issn":["0022-0957"],"eissn":["1460-2431"]},"language":[{"iso":"eng"}],"file_date_updated":"2024-01-02T09:23:57Z","issue":"22","type":"journal_article","_id":"14709","date_published":"2023-12-01T00:00:00Z","doi":"10.1093/jxb/erad420","external_id":{"pmid":["38038239"]},"month":"12","publication_status":"published","quality_controlled":"1","oa":1,"publication":"Journal of Experimental Botany","intvolume":" 74"},{"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"creator":"kschuh","file_size":1342319,"date_created":"2023-12-27T08:40:43Z","relation":"main_file","file_id":"14714","success":1,"content_type":"application/pdf","access_level":"open_access","checksum":"fd9e9d527c2691f03fbc24031a75a3b3","file_name":"2023_NatureComm_Curatolo.pdf","date_updated":"2023-12-27T08:40:43Z"}],"department":[{"_id":"CaGo"}],"author":[{"full_name":"Curatolo, Agnese I.","last_name":"Curatolo","first_name":"Agnese I."},{"first_name":"Ofer","last_name":"Kimchi","full_name":"Kimchi, Ofer"},{"id":"EB352CD2-F68A-11E9-89C5-A432E6697425","first_name":"Carl Peter","last_name":"Goodrich","orcid":"0000-0002-1307-5074","full_name":"Goodrich, Carl Peter"},{"first_name":"Ryan K.","full_name":"Krueger, Ryan K.","last_name":"Krueger"},{"full_name":"Brenner, Michael P.","last_name":"Brenner","first_name":"Michael P."}],"oa_version":"Published Version","publication_status":"published","quality_controlled":"1","intvolume":" 14","publication":"Nature Communications","oa":1,"_id":"14710","doi":"10.1038/s41467-023-43168-4","date_published":"2023-12-01T00:00:00Z","month":"12","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["20411723"]},"file_date_updated":"2023-12-27T08:40:43Z","type":"journal_article","ddc":["530"],"publisher":"Springer Nature","date_updated":"2024-01-02T11:36:46Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"8328","article_processing_charge":"Yes","title":"A computational toolbox for the assembly yield of complex and heterogeneous structures","status":"public","article_type":"original","acknowledgement":"We thank Lucy Colwell for suggesting that we use covariance based methods to predict contacts and Yang Hsia, Scott Boyken, Zibo Chen, and David Baker for collaborations on designed protein complexes. We also thank Ned Wingreen for suggesting the alternative derivation of (11). This research was supported by the Office of Naval Research through ONR N00014-17-1-3029, the Simons Foundation the NSF-Simons Center for Mathematical and Statistical Analysis of Biology at Harvard (award number #1764269), the Peter B. Lewis ’55 Lewis-Sigler Institute/Genomics Fund through the Lewis-Sigler Institute of Integrative Genomics at Princeton University, and the National Science Foundation through the Center for the Physics of Biological Function (PHY-1734030).","volume":14,"year":"2023","date_created":"2023-12-24T23:00:53Z","has_accepted_license":"1","scopus_import":"1","abstract":[{"text":"The self-assembly of complex structures from a set of non-identical building blocks is a hallmark of soft matter and biological systems, including protein complexes, colloidal clusters, and DNA-based assemblies. Predicting the dependence of the equilibrium assembly yield on the concentrations and interaction energies of building blocks is highly challenging, owing to the difficulty of computing the entropic contributions to the free energy of the many structures that compete with the ground state configuration. While these calculations yield well known results for spherically symmetric building blocks, they do not hold when the building blocks have internal rotational degrees of freedom. Here we present an approach for solving this problem that works with arbitrary building blocks, including proteins with known structure and complex colloidal building blocks. Our algorithm combines classical statistical mechanics with recently developed computational tools for automatic differentiation. Automatic differentiation allows efficient evaluation of equilibrium averages over configurations that would otherwise be intractable. We demonstrate the validity of our framework by comparison to molecular dynamics simulations of simple examples, and apply it to calculate the yield curves for known protein complexes and for the assembly of colloidal shells.","lang":"eng"}],"day":"01","citation":{"ista":"Curatolo AI, Kimchi O, Goodrich CP, Krueger RK, Brenner MP. 2023. A computational toolbox for the assembly yield of complex and heterogeneous structures. Nature Communications. 14, 8328.","apa":"Curatolo, A. I., Kimchi, O., Goodrich, C. P., Krueger, R. K., & Brenner, M. P. (2023). A computational toolbox for the assembly yield of complex and heterogeneous structures. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-43168-4","chicago":"Curatolo, Agnese I., Ofer Kimchi, Carl Peter Goodrich, Ryan K. Krueger, and Michael P. Brenner. “A Computational Toolbox for the Assembly Yield of Complex and Heterogeneous Structures.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-43168-4.","ama":"Curatolo AI, Kimchi O, Goodrich CP, Krueger RK, Brenner MP. A computational toolbox for the assembly yield of complex and heterogeneous structures. Nature Communications. 2023;14. doi:10.1038/s41467-023-43168-4","short":"A.I. Curatolo, O. Kimchi, C.P. Goodrich, R.K. Krueger, M.P. Brenner, Nature Communications 14 (2023).","ieee":"A. I. Curatolo, O. Kimchi, C. P. Goodrich, R. K. Krueger, and M. P. Brenner, “A computational toolbox for the assembly yield of complex and heterogeneous structures,” Nature Communications, vol. 14. Springer Nature, 2023.","mla":"Curatolo, Agnese I., et al. “A Computational Toolbox for the Assembly Yield of Complex and Heterogeneous Structures.” Nature Communications, vol. 14, 8328, Springer Nature, 2023, doi:10.1038/s41467-023-43168-4."}},{"month":"12","external_id":{"arxiv":["2307.11062"]},"arxiv":1,"doi":"10.1063/5.0172199","date_published":"2023-12-01T00:00:00Z","_id":"14715","oa":1,"intvolume":" 64","publication":"Journal of Mathematical Physics","quality_controlled":"1","publication_status":"published","type":"journal_article","issue":"12","file_date_updated":"2024-01-02T08:45:07Z","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0022-2488"],"eissn":["1089-7658"]},"department":[{"_id":"RoSe"}],"file":[{"content_type":"application/pdf","access_level":"open_access","checksum":"66572f718a36465576cf0d6b3f7e01fc","success":1,"file_name":"2023_JourMathPhysics_Mitrouskas.pdf","date_updated":"2024-01-02T08:45:07Z","file_size":4346922,"creator":"dernst","file_id":"14722","date_created":"2024-01-02T08:45:07Z","relation":"main_file"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"author":[{"id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","first_name":"David Johannes","last_name":"Mitrouskas","full_name":"Mitrouskas, David Johannes"},{"full_name":"Pickl, Peter","last_name":"Pickl","first_name":"Peter"}],"oa_version":"Published Version","scopus_import":"1","has_accepted_license":"1","citation":{"ista":"Mitrouskas DJ, Pickl P. 2023. Exponential decay of the number of excitations in the weakly interacting Bose gas. Journal of Mathematical Physics. 64(12), 121901.","chicago":"Mitrouskas, David Johannes, and Peter Pickl. “Exponential Decay of the Number of Excitations in the Weakly Interacting Bose Gas.” Journal of Mathematical Physics. AIP Publishing, 2023. https://doi.org/10.1063/5.0172199.","ama":"Mitrouskas DJ, Pickl P. Exponential decay of the number of excitations in the weakly interacting Bose gas. Journal of Mathematical Physics. 2023;64(12). doi:10.1063/5.0172199","apa":"Mitrouskas, D. J., & Pickl, P. (2023). Exponential decay of the number of excitations in the weakly interacting Bose gas. Journal of Mathematical Physics. AIP Publishing. https://doi.org/10.1063/5.0172199","short":"D.J. Mitrouskas, P. Pickl, Journal of Mathematical Physics 64 (2023).","ieee":"D. J. Mitrouskas and P. Pickl, “Exponential decay of the number of excitations in the weakly interacting Bose gas,” Journal of Mathematical Physics, vol. 64, no. 12. AIP Publishing, 2023.","mla":"Mitrouskas, David Johannes, and Peter Pickl. “Exponential Decay of the Number of Excitations in the Weakly Interacting Bose Gas.” Journal of Mathematical Physics, vol. 64, no. 12, 121901, AIP Publishing, 2023, doi:10.1063/5.0172199."},"day":"01","abstract":[{"text":"We consider N trapped bosons in the mean-field limit with coupling constant λN = 1/(N − 1). The ground state of such systems exhibits Bose–Einstein condensation. We prove that the probability of finding ℓ particles outside the condensate wave function decays exponentially in ℓ.","lang":"eng"}],"title":"Exponential decay of the number of excitations in the weakly interacting Bose gas","article_processing_charge":"Yes (in subscription journal)","article_number":"121901","date_updated":"2024-01-02T08:51:28Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"AIP Publishing","ddc":["510"],"date_created":"2023-12-31T23:01:02Z","year":"2023","volume":64,"acknowledgement":"We thank Lea Boßmann, Phan Thành Nam and Simone Rademacher for helpful remarks. P.P. acknowledges funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Grant No. SFB/TRR 352 “Mathematics of Many-Body Quantum Systems and Their Collective Phenomena.”","article_type":"original","status":"public"},{"file":[{"access_level":"open_access","checksum":"7ff5e95f3496ff663301eb4a13a316d5","content_type":"application/pdf","success":1,"date_updated":"2024-01-02T09:09:32Z","file_name":"2023_BMCMicrobiology_Yurtseven.pdf","file_size":1979922,"creator":"dernst","file_id":"14723","relation":"main_file","date_created":"2024-01-02T09:09:32Z"}],"department":[{"_id":"FyKo"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"oa_version":"Published Version","author":[{"last_name":"Yurtseven","full_name":"Yurtseven, Alper","first_name":"Alper"},{"first_name":"Sofia","id":"2F54A7BC-3902-11EA-AC87-BC9F3DDC885E","full_name":"Buyanova, Sofia","last_name":"Buyanova"},{"last_name":"Agrawal","full_name":"Agrawal, Amay Ajaykumar A.","first_name":"Amay Ajaykumar A."},{"last_name":"Bochkareva","full_name":"Bochkareva, Olga","orcid":"0000-0003-1006-6639","id":"C4558D3C-6102-11E9-A62E-F418E6697425","first_name":"Olga"},{"first_name":"Olga V V.","last_name":"Kalinina","full_name":"Kalinina, Olga V V."}],"_id":"14716","date_published":"2023-12-01T00:00:00Z","doi":"10.1186/s12866-023-03147-7","external_id":{"pmid":["38124060"]},"month":"12","publication_status":"published","quality_controlled":"1","intvolume":" 23","publication":"BMC Microbiology","oa":1,"publication_identifier":{"eissn":["1471-2180"]},"language":[{"iso":"eng"}],"file_date_updated":"2024-01-02T09:09:32Z","issue":"1","type":"journal_article","article_number":"404","article_processing_charge":"Yes (via OA deal)","title":"Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis","pmid":1,"ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer Nature","date_updated":"2024-01-02T09:20:57Z","acknowledgement":"Open Access funding enabled and organized by Projekt DEAL. A.Y. and O.V.K. acknowledge financial support from the Klaus Faber Foundation. A.A.A. was funded by the Helmholtz AI project AMR-XAI. The work of O.O.B. is funded by Fonds zur Förderung der Wissenschaftlichen Forschung (FWF), Grant ESP 253-B.","volume":23,"year":"2023","date_created":"2023-12-31T23:01:02Z","status":"public","article_type":"original","has_accepted_license":"1","scopus_import":"1","day":"01","citation":{"ieee":"A. Yurtseven, S. Buyanova, A. A. A. Agrawal, O. Bochkareva, and O. V. V. Kalinina, “Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis,” BMC Microbiology, vol. 23, no. 1. Springer Nature, 2023.","mla":"Yurtseven, Alper, et al. “Machine Learning and Phylogenetic Analysis Allow for Predicting Antibiotic Resistance in M. Tuberculosis.” BMC Microbiology, vol. 23, no. 1, 404, Springer Nature, 2023, doi:10.1186/s12866-023-03147-7.","ama":"Yurtseven A, Buyanova S, Agrawal AAA, Bochkareva O, Kalinina OVV. Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. 2023;23(1). doi:10.1186/s12866-023-03147-7","chicago":"Yurtseven, Alper, Sofia Buyanova, Amay Ajaykumar A. Agrawal, Olga Bochkareva, and Olga V V. Kalinina. “Machine Learning and Phylogenetic Analysis Allow for Predicting Antibiotic Resistance in M. Tuberculosis.” BMC Microbiology. Springer Nature, 2023. https://doi.org/10.1186/s12866-023-03147-7.","apa":"Yurtseven, A., Buyanova, S., Agrawal, A. A. A., Bochkareva, O., & Kalinina, O. V. V. (2023). Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. Springer Nature. https://doi.org/10.1186/s12866-023-03147-7","ista":"Yurtseven A, Buyanova S, Agrawal AAA, Bochkareva O, Kalinina OVV. 2023. Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. 23(1), 404.","short":"A. Yurtseven, S. Buyanova, A.A.A. Agrawal, O. Bochkareva, O.V.V. Kalinina, BMC Microbiology 23 (2023)."},"abstract":[{"text":"Background: Antimicrobial resistance (AMR) poses a significant global health threat, and an accurate prediction of bacterial resistance patterns is critical for effective treatment and control strategies. In recent years, machine learning (ML) approaches have emerged as powerful tools for analyzing large-scale bacterial AMR data. However, ML methods often ignore evolutionary relationships among bacterial strains, which can greatly impact performance of the ML methods, especially if resistance-associated features are attempted to be detected. Genome-wide association studies (GWAS) methods like linear mixed models accounts for the evolutionary relationships in bacteria, but they uncover only highly significant variants which have already been reported in literature.\r\n\r\nResults: In this work, we introduce a novel phylogeny-related parallelism score (PRPS), which measures whether a certain feature is correlated with the population structure of a set of samples. We demonstrate that PRPS can be used, in combination with SVM- and random forest-based models, to reduce the number of features in the analysis, while simultaneously increasing models’ performance. We applied our pipeline to publicly available AMR data from PATRIC database for Mycobacterium tuberculosis against six common antibiotics.\r\n\r\nConclusions: Using our pipeline, we re-discovered known resistance-associated mutations as well as new candidate mutations which can be related to resistance and not previously reported in the literature. We demonstrated that taking into account phylogenetic relationships not only improves the model performance, but also yields more biologically relevant predicted most contributing resistance markers.","lang":"eng"}]},{"file":[{"file_size":724748,"creator":"dernst","date_created":"2024-01-02T07:37:09Z","relation":"main_file","file_id":"14720","date_updated":"2024-01-02T07:37:09Z","file_name":"2023_QuarterlyJourMath_Horesh.pdf","content_type":"application/pdf","access_level":"open_access","checksum":"bf29baa9eae8500f3374dbcb80712687","success":1}],"department":[{"_id":"TiBr"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"author":[{"last_name":"Horesh","full_name":"Horesh, Tal","id":"C8B7BF48-8D81-11E9-BCA9-F536E6697425","first_name":"Tal"},{"first_name":"Yakov","full_name":"Karasik, Yakov","last_name":"Karasik"}],"oa_version":"Published Version","date_published":"2023-12-01T00:00:00Z","doi":"10.1093/qmath/haad008","_id":"14717","month":"12","external_id":{"arxiv":["2012.04508"]},"arxiv":1,"quality_controlled":"1","publication_status":"published","oa":1,"publication":"Quarterly Journal of Mathematics","intvolume":" 74","publication_identifier":{"issn":["0033-5606"],"eissn":["1464-3847"]},"file_date_updated":"2024-01-02T07:37:09Z","language":[{"iso":"eng"}],"type":"journal_article","issue":"4","title":"Equidistribution of primitive lattices in ℝn","article_processing_charge":"Yes (via OA deal)","ddc":["510"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Oxford University Press","date_updated":"2024-01-02T07:39:55Z","volume":74,"acknowledgement":"This work was done when both authors were visiting Institute of Science and Technology (IST) Austria. T.H. was being supported by Engineering and Physical Sciences Research Council grant EP/P026710/1. Y.K. had a great time there and is grateful for the hospitality. The appendix to this paper is largely based on a mini course T.H. had given at IST in February 2020.","date_created":"2023-12-31T23:01:03Z","year":"2023","page":"1253-1294","article_type":"original","project":[{"name":"Between rational and integral points","_id":"26A8D266-B435-11E9-9278-68D0E5697425","grant_number":"EP-P026710-2"}],"status":"public","has_accepted_license":"1","scopus_import":"1","day":"01","citation":{"ama":"Horesh T, Karasik Y. Equidistribution of primitive lattices in ℝn. Quarterly Journal of Mathematics. 2023;74(4):1253-1294. doi:10.1093/qmath/haad008","apa":"Horesh, T., & Karasik, Y. (2023). Equidistribution of primitive lattices in ℝn. Quarterly Journal of Mathematics. Oxford University Press. https://doi.org/10.1093/qmath/haad008","chicago":"Horesh, Tal, and Yakov Karasik. “Equidistribution of Primitive Lattices in ℝn.” Quarterly Journal of Mathematics. Oxford University Press, 2023. https://doi.org/10.1093/qmath/haad008.","ista":"Horesh T, Karasik Y. 2023. Equidistribution of primitive lattices in ℝn. Quarterly Journal of Mathematics. 74(4), 1253–1294.","short":"T. Horesh, Y. Karasik, Quarterly Journal of Mathematics 74 (2023) 1253–1294.","ieee":"T. Horesh and Y. Karasik, “Equidistribution of primitive lattices in ℝn,” Quarterly Journal of Mathematics, vol. 74, no. 4. Oxford University Press, pp. 1253–1294, 2023.","mla":"Horesh, Tal, and Yakov Karasik. “Equidistribution of Primitive Lattices in ℝn.” Quarterly Journal of Mathematics, vol. 74, no. 4, Oxford University Press, 2023, pp. 1253–94, doi:10.1093/qmath/haad008."},"abstract":[{"text":"We count primitive lattices of rank d inside Zn as their covolume tends to infinity, with respect to certain parameters of such lattices. These parameters include, for example, the subspace that a lattice spans, namely its projection to the Grassmannian; its homothety class and its equivalence class modulo rescaling and rotation, often referred to as a shape. We add to a prior work of Schmidt by allowing sets in the spaces of parameters that are general enough to conclude the joint equidistribution of these parameters. In addition to the primitive d-lattices Λ themselves, we also consider their orthogonal complements in Zn, A1, and show that the equidistribution occurs jointly for Λ and A1. Finally, our asymptotic formulas for the number of primitive lattices include an explicit bound on the error term.","lang":"eng"}]},{"scopus_import":"1","has_accepted_license":"1","citation":{"mla":"Pastva, Samuel, and Thomas A. Henzinger. “Binary Decision Diagrams on Modern Hardware.” Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design, TU Vienna Academic Press, 2023, pp. 122–31, doi:10.34727/2023/isbn.978-3-85448-060-0_20.","ieee":"S. Pastva and T. A. Henzinger, “Binary decision diagrams on modern hardware,” in Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design, Ames, IA, United States, 2023, pp. 122–131.","short":"S. Pastva, T.A. Henzinger, in:, Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design, TU Vienna Academic Press, 2023, pp. 122–131.","ama":"Pastva S, Henzinger TA. Binary decision diagrams on modern hardware. In: Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design. TU Vienna Academic Press; 2023:122-131. doi:10.34727/2023/isbn.978-3-85448-060-0_20","chicago":"Pastva, Samuel, and Thomas A Henzinger. “Binary Decision Diagrams on Modern Hardware.” In Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design, 122–31. TU Vienna Academic Press, 2023. https://doi.org/10.34727/2023/isbn.978-3-85448-060-0_20.","ista":"Pastva S, Henzinger TA. 2023. Binary decision diagrams on modern hardware. Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design. FMCAD: Conference on Formal Methods in Computer-aided design, 122–131.","apa":"Pastva, S., & Henzinger, T. A. (2023). Binary decision diagrams on modern hardware. In Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design (pp. 122–131). Ames, IA, United States: TU Vienna Academic Press. https://doi.org/10.34727/2023/isbn.978-3-85448-060-0_20"},"day":"01","abstract":[{"lang":"eng","text":"Binary decision diagrams (BDDs) are one of the fundamental data structures in formal methods and computer science in general. However, the performance of BDD-based algorithms greatly depends on memory latency due to the reliance on large hash tables and thus, by extension, on the speed of random memory access. This hinders the full utilisation of resources available on modern CPUs, since the absolute memory latency has not improved significantly for at least a decade. In this paper, we explore several implementation techniques that improve the performance of BDD manipulation either through enhanced memory locality or by partially eliminating random memory access. On a benchmark suite of 600+ BDDs derived from real-world applications, we demonstrate runtime that is comparable or better than parallelising the same operations on eight CPU cores. "}],"article_processing_charge":"No","title":"Binary decision diagrams on modern hardware","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"TU Vienna Academic Press","date_updated":"2024-01-02T08:16:28Z","ddc":["000"],"year":"2023","date_created":"2023-12-31T23:01:03Z","acknowledgement":"This work was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413 and the\r\n“VAMOS” grant ERC-2020-AdG 101020093.","status":"public","project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"},{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020"}],"page":"122-131","conference":{"name":"FMCAD: Conference on Formal Methods in Computer-aided design","start_date":"2023-10-25","location":"Ames, IA, United States","end_date":"2023-10-27"},"month":"10","_id":"14718","doi":"10.34727/2023/isbn.978-3-85448-060-0_20","date_published":"2023-10-01T00:00:00Z","oa":1,"publication":"Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design","publication_status":"published","quality_controlled":"1","type":"conference","publication_identifier":{"isbn":["9783854480600"]},"language":[{"iso":"eng"}],"file_date_updated":"2024-01-02T08:14:23Z","ec_funded":1,"department":[{"_id":"ToHe"}],"file":[{"access_level":"open_access","content_type":"application/pdf","checksum":"818d6e13dd508f3a04f0941081022e5d","success":1,"file_name":"2023_FMCAD_Pastva.pdf","date_updated":"2024-01-02T08:14:23Z","file_size":524321,"creator":"dernst","date_created":"2024-01-02T08:14:23Z","file_id":"14721","relation":"main_file"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"author":[{"last_name":"Pastva","full_name":"Pastva, Samuel","orcid":"0000-0003-1993-0331","id":"07c5ea74-f61c-11ec-a664-aa7c5d957b2b","first_name":"Samuel"},{"full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","last_name":"Henzinger","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"}],"oa_version":"Published Version"},{"title":"Nanostructured Li₂S cathodes for silicon-sulfur batteries","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-02T08:35:06Z","publisher":"American Chemical Society","volume":15,"acknowledgement":"The authors acknowledge the support from the 2BoSS project of the ERA-MIN3 program with the Spanish grant number PCI2022-132985/AEI/10.13039/501100011033 and the French grant number ANR-22-MIN3-0003-01. J.L. acknowledges the support from the Natural Science Foundation of Sichuan Province 2022NSFSC1229. The authors acknowledge the funding from Generalitat de Catalunya 2021 SGR 01581 and European Union NextGenerationEU/PRTR. This research was supported by the Scientific Service Units (SSU) of ISTA Austria through resources provided by Electron Microscopy Facility (EMF) and the Nanofabrication Facility (NNF).","date_created":"2023-12-31T23:01:03Z","year":"2023","page":"58462–58475","article_type":"original","status":"public","scopus_import":"1","day":"05","citation":{"mla":"Mollania, Hamid, et al. “Nanostructured Li₂S Cathodes for Silicon-Sulfur Batteries.” ACS Applied Materials and Interfaces, vol. 15, no. 50, American Chemical Society, 2023, pp. 58462–58475, doi:10.1021/acsami.3c14072.","ieee":"H. Mollania et al., “Nanostructured Li₂S cathodes for silicon-sulfur batteries,” ACS Applied Materials and Interfaces, vol. 15, no. 50. American Chemical Society, pp. 58462–58475, 2023.","short":"H. Mollania, C. Zhang, R. Du, X. Qi, J. Li, S. Horta, M. Ibáñez, C. Keller, P. Chenevier, M. Oloomi-Buygi, A. Cabot, ACS Applied Materials and Interfaces 15 (2023) 58462–58475.","chicago":"Mollania, Hamid, Chaoqi Zhang, Ruifeng Du, Xueqiang Qi, Junshan Li, Sharona Horta, Maria Ibáñez, et al. “Nanostructured Li₂S Cathodes for Silicon-Sulfur Batteries.” ACS Applied Materials and Interfaces. American Chemical Society, 2023. https://doi.org/10.1021/acsami.3c14072.","apa":"Mollania, H., Zhang, C., Du, R., Qi, X., Li, J., Horta, S., … Cabot, A. (2023). Nanostructured Li₂S cathodes for silicon-sulfur batteries. ACS Applied Materials and Interfaces. American Chemical Society. https://doi.org/10.1021/acsami.3c14072","ista":"Mollania H, Zhang C, Du R, Qi X, Li J, Horta S, Ibáñez M, Keller C, Chenevier P, Oloomi-Buygi M, Cabot A. 2023. Nanostructured Li₂S cathodes for silicon-sulfur batteries. ACS Applied Materials and Interfaces. 15(50), 58462–58475.","ama":"Mollania H, Zhang C, Du R, et al. Nanostructured Li₂S cathodes for silicon-sulfur batteries. ACS Applied Materials and Interfaces. 2023;15(50):58462–58475. doi:10.1021/acsami.3c14072"},"abstract":[{"lang":"eng","text":"Lithium–sulfur batteries are regarded as an advantageous option for meeting the growing demand for high-energy-density storage, but their commercialization relies on solving the current limitations of both sulfur cathodes and lithium metal anodes. In this scenario, the implementation of lithium sulfide (Li2S) cathodes compatible with alternative anode materials such as silicon has the potential to alleviate the safety concerns associated with lithium metal. In this direction, here, we report a sulfur cathode based on Li2S nanocrystals grown on a catalytic host consisting of CoFeP nanoparticles supported on tubular carbon nitride. Nanosized Li2S is incorporated into the host by a scalable liquid infiltration–evaporation method. Theoretical calculations and experimental results demonstrate that the CoFeP–CN composite can boost the polysulfide adsorption/conversion reaction kinetics and strongly reduce the initial overpotential activation barrier by stretching the Li–S bonds of Li2S. Besides, the ultrasmall size of the Li2S particles in the Li2S–CoFeP–CN composite cathode facilitates the initial activation. Overall, the Li2S–CoFeP–CN electrodes exhibit a low activation barrier of 2.56 V, a high initial capacity of 991 mA h gLi2S–1, and outstanding cyclability with a small fading rate of 0.029% per cycle over 800 cycles. Moreover, Si/Li2S full cells are assembled using the nanostructured Li2S–CoFeP–CN cathode and a prelithiated anode based on graphite-supported silicon nanowires. These Si/Li2S cells demonstrate high initial discharge capacities above 900 mA h gLi2S–1 and good cyclability with a capacity fading rate of 0.28% per cycle over 150 cycles."}],"department":[{"_id":"MaIb"}],"oa_version":"None","author":[{"full_name":"Mollania, Hamid","last_name":"Mollania","first_name":"Hamid"},{"last_name":"Zhang","full_name":"Zhang, Chaoqi","first_name":"Chaoqi"},{"first_name":"Ruifeng","last_name":"Du","full_name":"Du, Ruifeng"},{"first_name":"Xueqiang","full_name":"Qi, Xueqiang","last_name":"Qi"},{"last_name":"Li","full_name":"Li, Junshan","first_name":"Junshan"},{"first_name":"Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","full_name":"Horta, Sharona","last_name":"Horta"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria"},{"first_name":"Caroline","full_name":"Keller, Caroline","last_name":"Keller"},{"first_name":"Pascale","last_name":"Chenevier","full_name":"Chenevier, Pascale"},{"first_name":"Majid","full_name":"Oloomi-Buygi, Majid","last_name":"Oloomi-Buygi"},{"last_name":"Cabot","full_name":"Cabot, Andreu","first_name":"Andreu"}],"doi":"10.1021/acsami.3c14072","date_published":"2023-12-05T00:00:00Z","_id":"14719","month":"12","quality_controlled":"1","publication_status":"published","intvolume":" 15","publication":"ACS Applied Materials and Interfaces","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NanoFab"}],"publication_identifier":{"issn":["1944-8244"],"eissn":["1944-8252"]},"language":[{"iso":"eng"}],"type":"journal_article","issue":"50"},{"article_number":"koad324","title":"The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize","article_processing_charge":"No","ddc":["580"],"publisher":"Oxford University Press","date_updated":"2024-01-03T12:43:41Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-01-02T11:19:37Z","year":"2023","main_file_link":[{"url":"https://doi.org/10.1093/plcell/koad324","open_access":"1"}],"article_type":"original","status":"public","has_accepted_license":"1","day":"23","citation":{"apa":"Zhou, L.-Z., Wang, L., Chen, X., Ge, Z., Mergner, J., Li, X., … Dresselhaus, T. (2023). The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koad324","ista":"Zhou L-Z, Wang L, Chen X, Ge Z, Mergner J, Li X, Küster B, Längst G, Qu L-J, Dresselhaus T. 2023. The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell., koad324.","chicago":"Zhou, Liang-Zi, Lele Wang, Xia Chen, Zengxiang Ge, Julia Mergner, Xingli Li, Bernhard Küster, Gernot Längst, Li-Jia Qu, and Thomas Dresselhaus. “The RALF Signaling Pathway Regulates Cell Wall Integrity during Pollen Tube Growth in Maize.” The Plant Cell. Oxford University Press, 2023. https://doi.org/10.1093/plcell/koad324.","ama":"Zhou L-Z, Wang L, Chen X, et al. The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize. The Plant Cell. 2023. doi:10.1093/plcell/koad324","short":"L.-Z. Zhou, L. Wang, X. Chen, Z. Ge, J. Mergner, X. Li, B. Küster, G. Längst, L.-J. Qu, T. Dresselhaus, The Plant Cell (2023).","ieee":"L.-Z. Zhou et al., “The RALF signaling pathway regulates cell wall integrity during pollen tube growth in maize,” The Plant Cell. Oxford University Press, 2023.","mla":"Zhou, Liang-Zi, et al. “The RALF Signaling Pathway Regulates Cell Wall Integrity during Pollen Tube Growth in Maize.” The Plant Cell, koad324, Oxford University Press, 2023, doi:10.1093/plcell/koad324."},"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","abstract":[{"text":"Autocrine signaling pathways regulated by RAPID ALKALINIZATION FACTORs (RALFs) control cell wall integrity during pollen tube germination and growth in Arabidopsis (Arabidopsis thaliana). To investigate the role of pollen-specific RALFs in another plant species, we combined gene expression data with phylogenetic and biochemical studies to identify candidate orthologs in maize (Zea mays). We show that Clade IB ZmRALF2/3 mutations, but not Clade III ZmRALF1/5 mutations, cause cell wall instability in the sub-apical region of the growing pollen tube. ZmRALF2/3 are mainly located in the cell wall and are partially able to complement the pollen germination defect of their Arabidopsis orthologs AtRALF4/19. Mutations in ZmRALF2/3 compromise pectin distribution patterns leading to altered cell wall organization and thickness culminating in pollen tube burst. Clade IB, but not Clade III ZmRALFs, strongly interact as ligands with the pollen-specific Catharanthus roseus RLK1-like (CrRLK1L) receptor kinases Zea mays FERONIA-like (ZmFERL) 4/7/9, LORELEI-like glycosylphosphatidylinositol-anchor (LLG) proteins Zea mays LLG 1 and 2 (ZmLLG1/2) and Zea mays pollen extension-like (PEX) cell wall proteins ZmPEX2/4. Notably, ZmFERL4 outcompetes ZmLLG2 and ZmPEX2 outcompetes ZmFERL4 for ZmRALF2 binding. Based on these data, we suggest that Clade IB RALFs act in a dual role as cell wall components and extracellular sensors to regulate cell wall integrity and thickness during pollen tube growth in maize and probably other plants.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"oa_version":"Published Version","author":[{"first_name":"Liang-Zi","full_name":"Zhou, Liang-Zi","last_name":"Zhou"},{"full_name":"Wang, Lele","last_name":"Wang","first_name":"Lele"},{"last_name":"Chen","full_name":"Chen, Xia","first_name":"Xia"},{"first_name":"Zengxiang","id":"f43371a3-09ff-11eb-8013-bd0c6a2f6de8","orcid":"0000-0001-9381-3577","full_name":"Ge, Zengxiang","last_name":"Ge"},{"first_name":"Julia","last_name":"Mergner","full_name":"Mergner, Julia"},{"first_name":"Xingli","full_name":"Li, Xingli","last_name":"Li"},{"last_name":"Küster","full_name":"Küster, Bernhard","first_name":"Bernhard"},{"full_name":"Längst, Gernot","last_name":"Längst","first_name":"Gernot"},{"last_name":"Qu","full_name":"Qu, Li-Jia","first_name":"Li-Jia"},{"first_name":"Thomas","full_name":"Dresselhaus, Thomas","last_name":"Dresselhaus"}],"date_published":"2023-12-23T00:00:00Z","extern":"1","doi":"10.1093/plcell/koad324","_id":"14726","month":"12","quality_controlled":"1","publication_status":"epub_ahead","publication":"The Plant Cell","oa":1,"keyword":["Cell Biology","Plant Science"],"language":[{"iso":"eng"}],"publication_identifier":{"issn":["1040-4651"],"eissn":["1532-298X"]},"type":"journal_article"},{"publication_status":"submitted","publication":"bioRxiv","oa":1,"doi":"10.1101/2023.12.02.569702","date_published":"2023-12-04T00:00:00Z","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"14711"}]},"_id":"14732","month":"12","language":[{"iso":"eng"}],"type":"preprint","abstract":[{"lang":"eng","text":"Fragmented landscapes pose a significant threat to the persistence of species as they are highly susceptible to heightened risk of extinction due to the combined effects of genetic and demographic factors such as genetic drift and demographic stochasticity. This paper explores the intricate interplay between genetic load and extinction risk within metapopulations with a focus on understanding the impact of eco-evolutionary feedback mechanisms. We distinguish between two models of selection: soft selection, characterised by subpopulations maintaining carrying capacity despite load, and hard selection, where load can significantly affect population size. Within the soft selection framework, we investigate the impact of gene flow on genetic load at a single locus, while also considering the effect of selection strength and dominance coefficient. We subsequently build on this to examine how gene flow influences both population size and load under hard selection as well as identify critical thresholds for metapopulation persistence. Our analysis employs the diffusion, semi-deterministic and effective migration approximations. Our findings reveal that under soft selection, even modest levels of migration can significantly alleviate the burden of load. In sharp contrast, with hard selection, a much higher degree of gene flow is required to mitigate load and prevent the collapse of the metapopulation. Overall, this study sheds light into the crucial role migration plays in shaping the dynamics of genetic load and extinction risk in fragmented landscapes, offering valuable insights for conservation strategies and the preservation of diversity in a changing world."}],"day":"04","citation":{"mla":"Olusanya, Oluwafunmilola O., et al. “Genetic Load, Eco-Evolutionary Feedback and Extinction in a Metapopulation.” BioRxiv, doi:10.1101/2023.12.02.569702.","ieee":"O. O. Olusanya, K. Khudiakova, and H. Sachdeva, “Genetic load, eco-evolutionary feedback and extinction in a metapopulation,” bioRxiv. .","short":"O.O. Olusanya, K. Khudiakova, H. Sachdeva, BioRxiv (n.d.).","ama":"Olusanya OO, Khudiakova K, Sachdeva H. Genetic load, eco-evolutionary feedback and extinction in a metapopulation. bioRxiv. doi:10.1101/2023.12.02.569702","chicago":"Olusanya, Oluwafunmilola O, Kseniia Khudiakova, and Himani Sachdeva. “Genetic Load, Eco-Evolutionary Feedback and Extinction in a Metapopulation.” BioRxiv, n.d. https://doi.org/10.1101/2023.12.02.569702.","apa":"Olusanya, O. O., Khudiakova, K., & Sachdeva, H. (n.d.). Genetic load, eco-evolutionary feedback and extinction in a metapopulation. bioRxiv. https://doi.org/10.1101/2023.12.02.569702","ista":"Olusanya OO, Khudiakova K, Sachdeva H. Genetic load, eco-evolutionary feedback and extinction in a metapopulation. bioRxiv, 10.1101/2023.12.02.569702."},"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"date_updated":"2025-05-26T09:05:10Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","department":[{"_id":"NiBa"},{"_id":"JaMa"}],"title":"Genetic load, eco-evolutionary feedback and extinction in a metapopulation","article_processing_charge":"No","author":[{"id":"41AD96DC-F248-11E8-B48F-1D18A9856A87","first_name":"Oluwafunmilola O","last_name":"Olusanya","orcid":"0000-0003-1971-8314","full_name":"Olusanya, Oluwafunmilola O"},{"id":"4E6DC800-AE37-11E9-AC72-31CAE5697425","first_name":"Kseniia","last_name":"Khudiakova","full_name":"Khudiakova, Kseniia","orcid":"0000-0002-6246-1465"},{"first_name":"Himani","id":"42377A0A-F248-11E8-B48F-1D18A9856A87","full_name":"Sachdeva, Himani","last_name":"Sachdeva"}],"oa_version":"Preprint","main_file_link":[{"url":"https://www.biorxiv.org/content/10.1101/2023.12.02.569702v1","open_access":"1"}],"status":"public","project":[{"name":"Causes and consequences of population fragmentation","grant_number":"P32896","_id":"c08d3278-5a5b-11eb-8a69-fdb09b55f4b8"},{"name":"The impact of deleterious mutations on small populations","grant_number":"26293","_id":"34d33d68-11ca-11ed-8bc3-ec13763c0ca8"},{"_id":"34c872fe-11ca-11ed-8bc3-8534b82131e6","grant_number":"26380","name":"Polygenic Adaptation in a Metapopulation"}],"date_created":"2024-01-04T09:35:54Z","year":"2023"},{"type":"journal_article","publication_identifier":{"eissn":["2574-0962"]},"language":[{"iso":"eng"}],"keyword":["Electrical and Electronic Engineering","Materials Chemistry","Electrochemistry","Energy Engineering and Power Technology","Chemical Engineering (miscellaneous)"],"oa":1,"publication":"ACS Applied Energy Materials","publication_status":"epub_ahead","quality_controlled":"1","month":"12","_id":"14733","doi":"10.1021/acsaem.3c02223","date_published":"2023-12-28T00:00:00Z","oa_version":"Published Version","author":[{"first_name":"Rajesh B","id":"4cc538d5-803f-11ed-ab7e-8139573aad8f","orcid":"0000-0002-0404-4356","full_name":"Jethwa, Rajesh B","last_name":"Jethwa"},{"full_name":"Hey, Dominic","last_name":"Hey","first_name":"Dominic"},{"first_name":"Rachel N.","full_name":"Kerber, Rachel N.","last_name":"Kerber"},{"last_name":"Bond","full_name":"Bond, Andrew D.","first_name":"Andrew D."},{"first_name":"Dominic S.","last_name":"Wright","full_name":"Wright, Dominic S."},{"first_name":"Clare P.","full_name":"Grey, Clare P.","last_name":"Grey"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ec_funded":1,"department":[{"_id":"StFr"}],"abstract":[{"text":"Redox flow batteries (RFBs) rely on the development of cheap, highly soluble, and high-energy-density electrolytes. Several candidate quinones have already been investigated in the literature as two-electron anolytes or catholytes, benefiting from fast kinetics, high tunability, and low cost. Here, an investigation of nitrogen-rich fused heteroaromatic quinones was carried out to explore avenues for electrolyte development. These quinones were synthesized and screened by using electrochemical techniques. The most promising candidate, 4,8-dioxo-4,8-dihydrobenzo[1,2-d:4,5-d′]bis([1,2,3]triazole)-1,5-diide (−0.68 V(SHE)), was tested in both an asymmetric and symmetric full-cell setup resulting in capacity fade rates of 0.35% per cycle and 0.0124% per cycle, respectively. In situ ultraviolet-visible spectroscopy (UV–Vis), nuclear magnetic resonance (NMR), and electron paramagnetic resonance (EPR) spectroscopies were used to investigate the electrochemical stability of the charged species during operation. UV–Vis spectroscopy, supported by density functional theory (DFT) modeling, reaffirmed that the two-step charging mechanism observed during battery operation consisted of two, single-electron transfers. The radical concentration during battery operation and the degree of delocalization of the unpaired electron were quantified with NMR and EPR spectroscopy.","lang":"eng"}],"citation":{"short":"R.B. Jethwa, D. Hey, R.N. Kerber, A.D. Bond, D.S. Wright, C.P. Grey, ACS Applied Energy Materials (2023).","chicago":"Jethwa, Rajesh B, Dominic Hey, Rachel N. Kerber, Andrew D. Bond, Dominic S. Wright, and Clare P. Grey. “Exploring the Landscape of Heterocyclic Quinones for Redox Flow Batteries.” ACS Applied Energy Materials. American Chemical Society, 2023. https://doi.org/10.1021/acsaem.3c02223.","ista":"Jethwa RB, Hey D, Kerber RN, Bond AD, Wright DS, Grey CP. 2023. Exploring the landscape of heterocyclic quinones for redox flow batteries. ACS Applied Energy Materials.","ama":"Jethwa RB, Hey D, Kerber RN, Bond AD, Wright DS, Grey CP. Exploring the landscape of heterocyclic quinones for redox flow batteries. ACS Applied Energy Materials. 2023. doi:10.1021/acsaem.3c02223","apa":"Jethwa, R. B., Hey, D., Kerber, R. N., Bond, A. D., Wright, D. S., & Grey, C. P. (2023). Exploring the landscape of heterocyclic quinones for redox flow batteries. ACS Applied Energy Materials. American Chemical Society. https://doi.org/10.1021/acsaem.3c02223","mla":"Jethwa, Rajesh B., et al. “Exploring the Landscape of Heterocyclic Quinones for Redox Flow Batteries.” ACS Applied Energy Materials, American Chemical Society, 2023, doi:10.1021/acsaem.3c02223.","ieee":"R. B. Jethwa, D. Hey, R. N. Kerber, A. D. Bond, D. S. Wright, and C. P. Grey, “Exploring the landscape of heterocyclic quinones for redox flow batteries,” ACS Applied Energy Materials. American Chemical Society, 2023."},"day":"28","has_accepted_license":"1","project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"status":"public","article_type":"original","main_file_link":[{"url":"https://doi.org/10.1021/acsaem.3c02223","open_access":"1"}],"year":"2023","date_created":"2024-01-05T09:20:48Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-08T09:03:01Z","publisher":"American Chemical Society","ddc":["540"],"article_processing_charge":"Yes (in subscription journal)","title":"Exploring the landscape of heterocyclic quinones for redox flow batteries"},{"date_published":"2023-12-28T00:00:00Z","doi":"10.1002/smtd.202301377","_id":"14734","month":"12","external_id":{"pmid":["38152986"]},"scopus_import":"1","quality_controlled":"1","publication_status":"epub_ahead","publication":"Small Methods","day":"28","citation":{"ieee":"S. Wan et al., “Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4,” Small Methods. Wiley, 2023.","mla":"Wan, Shanhong, et al. “Band Engineering through Pb-Doping of Nanocrystal Building Blocks to Enhance Thermoelectric Performance in Cu3SbSe4.” Small Methods, Wiley, 2023, doi:10.1002/smtd.202301377.","chicago":"Wan, Shanhong, Shanshan Xiao, Mingquan Li, Xin Wang, Khak Ho Lim, Min Hong, Maria Ibáñez, Andreu Cabot, and Yu Liu. “Band Engineering through Pb-Doping of Nanocrystal Building Blocks to Enhance Thermoelectric Performance in Cu3SbSe4.” Small Methods. Wiley, 2023. https://doi.org/10.1002/smtd.202301377.","ista":"Wan S, Xiao S, Li M, Wang X, Lim KH, Hong M, Ibáñez M, Cabot A, Liu Y. 2023. Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. Small Methods.","ama":"Wan S, Xiao S, Li M, et al. Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. Small Methods. 2023. doi:10.1002/smtd.202301377","apa":"Wan, S., Xiao, S., Li, M., Wang, X., Lim, K. H., Hong, M., … Liu, Y. (2023). Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4. Small Methods. Wiley. https://doi.org/10.1002/smtd.202301377","short":"S. Wan, S. Xiao, M. Li, X. Wang, K.H. Lim, M. Hong, M. Ibáñez, A. Cabot, Y. Liu, Small Methods (2023)."},"publication_identifier":{"eissn":["2366-9608"]},"language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"lang":"eng","text":"Developing cost-effective and high-performance thermoelectric (TE) materials to assemble efficient TE devices presents a multitude of challenges and opportunities. Cu3SbSe4 is a promising p-type TE material based on relatively earth abundant elements. However, the challenge lies in its poor electrical conductivity. Herein, an efficient and scalable solution-based approach is developed to synthesize high-quality Cu3SbSe4 nanocrystals doped with Pb at the Sb site. After ligand displacement and annealing treatments, the dried powders are consolidated into dense pellets, and their TE properties are investigated. Pb doping effectively increases the charge carrier concentration, resulting in a significant increase in electrical conductivity, while the Seebeck coefficients remain consistently high. The calculated band structure shows that Pb doping induces band convergence, thereby increasing the effective mass. Furthermore, the large ionic radius of Pb2+ results in the generation of additional point and plane defects and interphases, dramatically enhancing phonon scattering, which significantly decreases the lattice thermal conductivity at high temperatures. Overall, a maximum figure of merit (zTmax) ≈ 0.85 at 653 K is obtained in Cu3Sb0.97Pb0.03Se4. This represents a 1.6-fold increase compared to the undoped sample and exceeds most doped Cu3SbSe4-based materials produced by solid-state, demonstrating advantages of versatility and cost-effectiveness using a solution-based technology."}],"department":[{"_id":"MaIb"}],"pmid":1,"title":"Band engineering through Pb-doping of nanocrystal building blocks to enhance thermoelectric performance in Cu3SbSe4","article_processing_charge":"No","publisher":"Wiley","date_updated":"2024-01-08T09:17:04Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"Y.L. acknowledges funding from the National Natural Science Foundation of China (NSFC) (Grants No. 22209034), the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province (Grant No. 2022LCX002). K.H.L. acknowledges financial support from the National Natural Science Foundation of China (NSFC) (Grant No. 22208293). M.I. acknowledges financial support from ISTA and the Werner Siemens Foundation.","date_created":"2024-01-07T23:00:51Z","year":"2023","article_type":"original","oa_version":"None","author":[{"last_name":"Wan","full_name":"Wan, Shanhong","first_name":"Shanhong"},{"first_name":"Shanshan","last_name":"Xiao","full_name":"Xiao, Shanshan"},{"full_name":"Li, Mingquan","last_name":"Li","first_name":"Mingquan"},{"first_name":"Xin","last_name":"Wang","full_name":"Wang, Xin"},{"first_name":"Khak Ho","last_name":"Lim","full_name":"Lim, Khak Ho"},{"first_name":"Min","full_name":"Hong, Min","last_name":"Hong"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"},{"orcid":"0000-0001-7313-6740","full_name":"Liu, Yu","last_name":"Liu","first_name":"Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87"}],"status":"public","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}]},{"day":"01","citation":{"mla":"Stefo, Christos, et al. “Executing and Proving over Dirty Ledgers.” 27th International Conference on Financial Cryptography and Data Security, vol. 13950, Springer Nature, 2023, pp. 3–20, doi:10.1007/978-3-031-47754-6_1.","ieee":"C. Stefo, Z. Xiang, and E. Kokoris Kogias, “Executing and proving over dirty ledgers,” in 27th International Conference on Financial Cryptography and Data Security, Bol, Brac, Croatia, 2023, vol. 13950, pp. 3–20.","short":"C. Stefo, Z. Xiang, E. Kokoris Kogias, in:, 27th International Conference on Financial Cryptography and Data Security, Springer Nature, 2023, pp. 3–20.","ama":"Stefo C, Xiang Z, Kokoris Kogias E. Executing and proving over dirty ledgers. In: 27th International Conference on Financial Cryptography and Data Security. Vol 13950. Springer Nature; 2023:3-20. doi:10.1007/978-3-031-47754-6_1","chicago":"Stefo, Christos, Zhuolun Xiang, and Eleftherios Kokoris Kogias. “Executing and Proving over Dirty Ledgers.” In 27th International Conference on Financial Cryptography and Data Security, 13950:3–20. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-47754-6_1.","apa":"Stefo, C., Xiang, Z., & Kokoris Kogias, E. (2023). Executing and proving over dirty ledgers. In 27th International Conference on Financial Cryptography and Data Security (Vol. 13950, pp. 3–20). Bol, Brac, Croatia: Springer Nature. https://doi.org/10.1007/978-3-031-47754-6_1","ista":"Stefo C, Xiang Z, Kokoris Kogias E. 2023. Executing and proving over dirty ledgers. 27th International Conference on Financial Cryptography and Data Security. FC: Financial Cryptography and Data Security, LNCS, vol. 13950, 3–20."},"abstract":[{"text":"Scaling blockchain protocols to perform on par with the expected needs of Web3.0 has been proven to be a challenging task with almost a decade of research. In the forefront of the current solution is the idea of separating the execution of the updates encoded in a block from the ordering of blocks. In order to achieve this, a new class of protocols called rollups has emerged. Rollups have as input a total ordering of valid and invalid transactions and as output a new valid state-transition.\r\nIf we study rollups from a distributed computing perspective, we uncover that rollups take as input the output of a Byzantine Atomic Broadcast (BAB) protocol and convert it to a State Machine Replication (SMR) protocol. BAB and SMR, however, are considered equivalent as far as distributed computing is concerned and a solution to one can easily be retrofitted to solve the other simply by adding/removing an execution step before the validation of the input.\r\nThis “easy” step of retrofitting an atomic broadcast solution to implement an SMR has, however, been overlooked in practice. In this paper, we formalize the problem and show that after BAB is solved, traditional impossibility results for consensus no longer apply towards an SMR. Leveraging this we propose a distributed execution protocol that allows reduced execution and storage cost per executor (O(log2n/n)) without relaxing the network assumptions of the underlying BAB protocol and providing censorship-resistance. Finally, we propose efficient non-interactive light client constructions that leverage our efficient execution protocols and do not require any synchrony assumptions or expensive ZK-proofs.","lang":"eng"}],"scopus_import":"1","acknowledgement":"Eleftherios Kokoris-Kogias is partially supported by Austrian Science Fund (FWF) grant No: F8512-N.","volume":13950,"year":"2023","date_created":"2024-01-08T09:17:38Z","page":"3-20","project":[{"name":"Secure Network and Hardware for Efficient Blockchains","_id":"34a4ce89-11ca-11ed-8bc3-8cc37fb6e11f","grant_number":"F8512"}],"status":"public","main_file_link":[{"url":"https://eprint.iacr.org/2022/1554","open_access":"1"}],"article_processing_charge":"No","title":"Executing and proving over dirty ledgers","publisher":"Springer Nature","date_updated":"2024-01-08T09:28:14Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","alternative_title":["LNCS"],"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["0302-9743"],"issn":["1611-3349"],"isbn":["9783031477539"],"eisbn":["9783031477546"]},"type":"conference","_id":"14735","doi":"10.1007/978-3-031-47754-6_1","date_published":"2023-12-01T00:00:00Z","conference":{"name":"FC: Financial Cryptography and Data Security","start_date":"2023-05-01","end_date":"2023-05-05","location":"Bol, Brac, Croatia"},"month":"12","publication_status":"published","quality_controlled":"1","oa":1,"intvolume":" 13950","publication":"27th International Conference on Financial Cryptography and Data Security","author":[{"first_name":"Christos","id":"a20e8902-32b0-11ee-9fa8-b23fa638b793","full_name":"Stefo, Christos","last_name":"Stefo"},{"last_name":"Xiang","full_name":"Xiang, Zhuolun","first_name":"Zhuolun"},{"last_name":"Kokoris Kogias","full_name":"Kokoris Kogias, Eleftherios","id":"f5983044-d7ef-11ea-ac6d-fd1430a26d30","first_name":"Eleftherios"}],"oa_version":"Preprint","department":[{"_id":"ElKo"},{"_id":"GradSch"}]},{"abstract":[{"text":"Payment channel networks (PCNs) are a promising technology to improve the scalability of cryptocurrencies. PCNs, however, face the challenge that the frequent usage of certain routes may deplete channels in one direction, and hence prevent further transactions. In order to reap the full potential of PCNs, recharging and rebalancing mechanisms are required to provision channels, as well as an admission control logic to decide which transactions to reject in case capacity is insufficient. This paper presents a formal model of this optimisation problem. In particular, we consider an online algorithms perspective, where transactions arrive over time in an unpredictable manner. Our main contributions are competitive online algorithms which come with provable guarantees over time. We empirically evaluate our algorithms on randomly generated transactions to compare the average performance of our algorithms to our theoretical bounds. We also show how this model and approach differs from related problems in classic communication networks.","lang":"eng"}],"day":"01","citation":{"ama":"Bastankhah M, Chatterjee K, Maddah-Ali MA, Schmid S, Svoboda J, Yeo MX. R2: Boosting liquidity in payment channel networks with online admission control. In: 27th International Conference on Financial Cryptography and Data Security. Vol 13950. Springer Nature; 2023:309-325. doi:10.1007/978-3-031-47754-6_18","apa":"Bastankhah, M., Chatterjee, K., Maddah-Ali, M. A., Schmid, S., Svoboda, J., & Yeo, M. X. (2023). R2: Boosting liquidity in payment channel networks with online admission control. In 27th International Conference on Financial Cryptography and Data Security (Vol. 13950, pp. 309–325). Bol, Brac, Croatia: Springer Nature. https://doi.org/10.1007/978-3-031-47754-6_18","chicago":"Bastankhah, Mahsa, Krishnendu Chatterjee, Mohammad Ali Maddah-Ali, Stefan Schmid, Jakub Svoboda, and Michelle X Yeo. “R2: Boosting Liquidity in Payment Channel Networks with Online Admission Control.” In 27th International Conference on Financial Cryptography and Data Security, 13950:309–25. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-47754-6_18.","ista":"Bastankhah M, Chatterjee K, Maddah-Ali MA, Schmid S, Svoboda J, Yeo MX. 2023. R2: Boosting liquidity in payment channel networks with online admission control. 27th International Conference on Financial Cryptography and Data Security. FC: Financial Cryptography and Data Security, LNCS, vol. 13950, 309–325.","short":"M. Bastankhah, K. Chatterjee, M.A. Maddah-Ali, S. Schmid, J. Svoboda, M.X. Yeo, in:, 27th International Conference on Financial Cryptography and Data Security, Springer Nature, 2023, pp. 309–325.","ieee":"M. Bastankhah, K. Chatterjee, M. A. Maddah-Ali, S. Schmid, J. Svoboda, and M. X. Yeo, “R2: Boosting liquidity in payment channel networks with online admission control,” in 27th International Conference on Financial Cryptography and Data Security, Bol, Brac, Croatia, 2023, vol. 13950, pp. 309–325.","mla":"Bastankhah, Mahsa, et al. “R2: Boosting Liquidity in Payment Channel Networks with Online Admission Control.” 27th International Conference on Financial Cryptography and Data Security, vol. 13950, Springer Nature, 2023, pp. 309–25, doi:10.1007/978-3-031-47754-6_18."},"page":"309-325","status":"public","project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","name":"Formal Methods for Stochastic Models: Algorithms and Applications","call_identifier":"H2020"}],"volume":13950,"acknowledgement":"Supported by the German Federal Ministry of Education and Research (BMBF), grant 16KISK020K (6G-RIC), 2021–2025, and ERC CoG 863818 (ForM-SMArt).","date_created":"2024-01-08T09:30:22Z","year":"2023","publisher":"Springer Nature","date_updated":"2025-07-14T09:10:01Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"R2: Boosting liquidity in payment channel networks with online admission control","article_processing_charge":"No","language":[{"iso":"eng"}],"publication_identifier":{"eisbn":["9783031477546"],"isbn":["9783031477539"],"issn":["0302-9743"],"eissn":["1611-3349"]},"type":"conference","alternative_title":["LNCS"],"quality_controlled":"1","publication_status":"published","intvolume":" 13950","publication":"27th International Conference on Financial Cryptography and Data Security","doi":"10.1007/978-3-031-47754-6_18","date_published":"2023-12-01T00:00:00Z","_id":"14736","month":"12","conference":{"name":"FC: Financial Cryptography and Data Security","start_date":"2023-05-01","end_date":"2023-05-05","location":"Bol, Brac, Croatia"},"oa_version":"None","author":[{"last_name":"Bastankhah","full_name":"Bastankhah, Mahsa","first_name":"Mahsa"},{"first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee"},{"first_name":"Mohammad Ali","last_name":"Maddah-Ali","full_name":"Maddah-Ali, Mohammad Ali"},{"first_name":"Stefan","full_name":"Schmid, Stefan","last_name":"Schmid"},{"full_name":"Svoboda, Jakub","orcid":"0000-0002-1419-3267","last_name":"Svoboda","first_name":"Jakub","id":"130759D2-D7DD-11E9-87D2-DE0DE6697425"},{"id":"2D82B818-F248-11E8-B48F-1D18A9856A87","first_name":"Michelle X","last_name":"Yeo","full_name":"Yeo, Michelle X","orcid":"0009-0001-3676-4809"}],"department":[{"_id":"KrCh"},{"_id":"KrPi"}],"ec_funded":1},{"issue":"23","type":"journal_article","file_date_updated":"2024-01-08T09:53:09Z","publication_identifier":{"issn":["1073-7928"],"eissn":["1687-0247"]},"language":[{"iso":"eng"}],"keyword":["General Mathematics"],"intvolume":" 2023","oa":1,"publication":"International Mathematics Research Notices","publication_status":"published","quality_controlled":"1","external_id":{"arxiv":["2212.11781"]},"arxiv":1,"month":"12","_id":"14737","date_published":"2023-12-01T00:00:00Z","doi":"10.1093/imrn/rnad210","oa_version":"Published Version","author":[{"first_name":"Grigory","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E","full_name":"Ivanov, Grigory","last_name":"Ivanov"},{"last_name":"Naszódi","full_name":"Naszódi, Márton","first_name":"Márton"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"department":[{"_id":"UlWa"}],"file":[{"file_name":"2023_IMRN_Ivanov.pdf","date_updated":"2024-01-08T09:53:09Z","success":1,"access_level":"open_access","checksum":"353666cea80633beb0f1ffd342dff6d4","content_type":"application/pdf","file_size":815777,"creator":"dernst","file_id":"14738","relation":"main_file","date_created":"2024-01-08T09:53:09Z"}],"abstract":[{"lang":"eng","text":"John’s fundamental theorem characterizing the largest volume ellipsoid contained in a convex body $K$ in $\\mathbb{R}^{d}$ has seen several generalizations and extensions. One direction, initiated by V. Milman is to replace ellipsoids by positions (affine images) of another body $L$. Another, more recent direction is to consider logarithmically concave functions on $\\mathbb{R}^{d}$ instead of convex bodies: we designate some special, radially symmetric log-concave function $g$ as the analogue of the Euclidean ball, and want to find its largest integral position under the constraint that it is pointwise below some given log-concave function $f$. We follow both directions simultaneously: we consider the functional question, and allow essentially any meaningful function to play the role of $g$ above. Our general theorems jointly extend known results in both directions. The dual problem in the setting of convex bodies asks for the smallest volume ellipsoid, called Löwner’s ellipsoid, containing $K$. We consider the analogous problem for functions: we characterize the solutions of the optimization problem of finding a smallest integral position of some log-concave function $g$ under the constraint that it is pointwise above $f$. It turns out that in the functional setting, the relationship between the John and the Löwner problems is more intricate than it is in the setting of convex bodies."}],"citation":{"mla":"Ivanov, Grigory, and Márton Naszódi. “Functional John and Löwner Conditions for Pairs of Log-Concave Functions.” International Mathematics Research Notices, vol. 2023, no. 23, Oxford University Press, 2023, pp. 20613–69, doi:10.1093/imrn/rnad210.","ieee":"G. Ivanov and M. Naszódi, “Functional John and Löwner conditions for pairs of log-concave functions,” International Mathematics Research Notices, vol. 2023, no. 23. Oxford University Press, pp. 20613–20669, 2023.","short":"G. Ivanov, M. Naszódi, International Mathematics Research Notices 2023 (2023) 20613–20669.","ama":"Ivanov G, Naszódi M. Functional John and Löwner conditions for pairs of log-concave functions. International Mathematics Research Notices. 2023;2023(23):20613-20669. doi:10.1093/imrn/rnad210","chicago":"Ivanov, Grigory, and Márton Naszódi. “Functional John and Löwner Conditions for Pairs of Log-Concave Functions.” International Mathematics Research Notices. Oxford University Press, 2023. https://doi.org/10.1093/imrn/rnad210.","apa":"Ivanov, G., & Naszódi, M. (2023). Functional John and Löwner conditions for pairs of log-concave functions. International Mathematics Research Notices. Oxford University Press. https://doi.org/10.1093/imrn/rnad210","ista":"Ivanov G, Naszódi M. 2023. Functional John and Löwner conditions for pairs of log-concave functions. International Mathematics Research Notices. 2023(23), 20613–20669."},"day":"01","has_accepted_license":"1","status":"public","article_type":"original","page":"20613-20669","year":"2023","date_created":"2024-01-08T09:48:56Z","acknowledgement":"We thank Alexander Litvak for the many discussions on Theorem 1.1. Igor Tsiutsiurupa participated in the early stage of this project. To our deep regret, Igor chose another road for his life and stopped working with us.\r\nThis work was supported by the János Bolyai Scholarship of the Hungarian Academy of Sciences [to M.N.]; the National Research, Development, and Innovation Fund (NRDI) [K119670 and K131529 to M.N.]; and the ÚNKP-22-5 New National Excellence Program of the Ministry for Innovation and Technology from the source of the NRDI [to M.N.].","volume":2023,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-08T09:57:25Z","publisher":"Oxford University Press","ddc":["510"],"article_processing_charge":"Yes (via OA deal)","title":"Functional John and Löwner conditions for pairs of log-concave functions"},{"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"date_created":"2024-01-08T10:09:14Z","file_id":"14740","relation":"main_file","file_size":2370988,"creator":"dernst","access_level":"open_access","checksum":"465c28ef0b151b4b1fb47977ed5581ab","content_type":"application/pdf","success":1,"file_name":"2023_IEEEToP_Ali.pdf","date_updated":"2024-01-08T10:09:14Z"}],"department":[{"_id":"HeEd"}],"author":[{"full_name":"Ali, Dashti","last_name":"Ali","first_name":"Dashti"},{"full_name":"Asaad, Aras","last_name":"Asaad","first_name":"Aras"},{"first_name":"Maria-Jose","full_name":"Jimenez, Maria-Jose","last_name":"Jimenez"},{"full_name":"Nanda, Vidit","last_name":"Nanda","first_name":"Vidit"},{"full_name":"Paluzo-Hidalgo, Eduardo","last_name":"Paluzo-Hidalgo","first_name":"Eduardo"},{"first_name":"Manuel","id":"15ebd7cf-15bf-11ee-aebd-bb4bb5121ea8","orcid":"0000-0003-2449-1433","full_name":"Soriano Trigueros, Manuel","last_name":"Soriano Trigueros"}],"oa_version":"Published Version","quality_controlled":"1","publication_status":"published","intvolume":" 45","publication":"IEEE Transactions on Pattern Analysis and Machine Intelligence","oa":1,"doi":"10.1109/tpami.2023.3308391","date_published":"2023-12-01T00:00:00Z","_id":"14739","month":"12","keyword":["Applied Mathematics","Artificial Intelligence","Computational Theory and Mathematics","Computer Vision and Pattern Recognition","Software"],"publication_identifier":{"eissn":["1939-3539"],"issn":["0162-8828"]},"language":[{"iso":"eng"}],"file_date_updated":"2024-01-08T10:09:14Z","type":"journal_article","issue":"12","ddc":["000"],"publisher":"IEEE","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-08T10:11:46Z","title":"A survey of vectorization methods in topological data analysis","article_processing_charge":"Yes (in subscription journal)","page":"14069-14080","article_type":"original","status":"public","volume":45,"acknowledgement":"The work of Maria-Jose Jimenez, Eduardo Paluzo-Hidalgo and Manuel Soriano-Trigueros was supported in part by the Spanish grant Ministerio de Ciencia e Innovacion under Grants TED2021-129438B-I00 and PID2019-107339GB-I00, and in part by REXASI-PRO H-EU project, call HORIZON-CL4-2021-HUMAN-01-01 under Grant 101070028. The work of\r\nMaria-Jose Jimenez was supported by a grant of Convocatoria de la Universidad de Sevilla para la recualificacion del sistema universitario español, 2021-23, funded by the European Union, NextGenerationEU. The work of Vidit Nanda was supported in part by EPSRC under Grant EP/R018472/1 and in part by US AFOSR under Grant FA9550-22-1-0462. \r\nWe are grateful to the team of GUDHI and TEASPOON developers, for their work and their support. We are also grateful to Streamlit for providing extra resources to deploy the web app\r\nonline on Streamlit community cloud. We thank the anonymous referees for their helpful suggestions.","date_created":"2024-01-08T09:59:46Z","year":"2023","has_accepted_license":"1","abstract":[{"lang":"eng","text":"Attempts to incorporate topological information in supervised learning tasks have resulted in the creation of several techniques for vectorizing persistent homology barcodes. In this paper, we study thirteen such methods. Besides describing an organizational framework for these methods, we comprehensively benchmark them against three well-known classification tasks. Surprisingly, we discover that the best-performing method is a simple vectorization, which consists only of a few elementary summary statistics. Finally, we provide a convenient web application which has been designed to facilitate exploration and experimentation with various vectorization methods."}],"day":"01","citation":{"ama":"Ali D, Asaad A, Jimenez M-J, Nanda V, Paluzo-Hidalgo E, Soriano Trigueros M. A survey of vectorization methods in topological data analysis. IEEE Transactions on Pattern Analysis and Machine Intelligence. 2023;45(12):14069-14080. doi:10.1109/tpami.2023.3308391","ista":"Ali D, Asaad A, Jimenez M-J, Nanda V, Paluzo-Hidalgo E, Soriano Trigueros M. 2023. A survey of vectorization methods in topological data analysis. IEEE Transactions on Pattern Analysis and Machine Intelligence. 45(12), 14069–14080.","apa":"Ali, D., Asaad, A., Jimenez, M.-J., Nanda, V., Paluzo-Hidalgo, E., & Soriano Trigueros, M. (2023). A survey of vectorization methods in topological data analysis. IEEE Transactions on Pattern Analysis and Machine Intelligence. IEEE. https://doi.org/10.1109/tpami.2023.3308391","chicago":"Ali, Dashti, Aras Asaad, Maria-Jose Jimenez, Vidit Nanda, Eduardo Paluzo-Hidalgo, and Manuel Soriano Trigueros. “A Survey of Vectorization Methods in Topological Data Analysis.” IEEE Transactions on Pattern Analysis and Machine Intelligence. IEEE, 2023. https://doi.org/10.1109/tpami.2023.3308391.","short":"D. Ali, A. Asaad, M.-J. Jimenez, V. Nanda, E. Paluzo-Hidalgo, M. Soriano Trigueros, IEEE Transactions on Pattern Analysis and Machine Intelligence 45 (2023) 14069–14080.","ieee":"D. Ali, A. Asaad, M.-J. Jimenez, V. Nanda, E. Paluzo-Hidalgo, and M. Soriano Trigueros, “A survey of vectorization methods in topological data analysis,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 45, no. 12. IEEE, pp. 14069–14080, 2023.","mla":"Ali, Dashti, et al. “A Survey of Vectorization Methods in Topological Data Analysis.” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 45, no. 12, IEEE, 2023, pp. 14069–80, doi:10.1109/tpami.2023.3308391."}},{"intvolume":" 15","publication":"Cold Spring Harbor Perspectives in Biology","oa":1,"publication_status":"published","quality_controlled":"1","external_id":{"pmid":["37604585"]},"month":"11","_id":"14742","doi":"10.1101/cshperspect.a041447","date_published":"2023-11-01T00:00:00Z","issue":"11","type":"journal_article","publication_identifier":{"issn":["1943-0264"]},"language":[{"iso":"eng"}],"keyword":["General Biochemistry","Genetics and Molecular Biology"],"department":[{"_id":"NiBa"},{"_id":"BeVi"}],"author":[{"first_name":"Kay","last_name":"Lucek","full_name":"Lucek, Kay"},{"first_name":"Mabel D.","full_name":"Giménez, Mabel D.","last_name":"Giménez"},{"last_name":"Joron","full_name":"Joron, Mathieu","first_name":"Mathieu"},{"first_name":"Marina","last_name":"Rafajlović","full_name":"Rafajlović, Marina"},{"full_name":"Searle, Jeremy B.","last_name":"Searle","first_name":"Jeremy B."},{"full_name":"Walden, Nora","last_name":"Walden","first_name":"Nora"},{"last_name":"Westram","full_name":"Westram, Anja M","orcid":"0000-0003-1050-4969","id":"3C147470-F248-11E8-B48F-1D18A9856A87","first_name":"Anja M"},{"first_name":"Rui","last_name":"Faria","full_name":"Faria, Rui"}],"oa_version":"Published Version","scopus_import":"1","abstract":[{"text":"Chromosomal rearrangements (CRs) have been known since almost the beginning of genetics.\r\nWhile an important role for CRs in speciation has been suggested, evidence primarily stems\r\nfrom theoretical and empirical studies focusing on the microevolutionary level (i.e., on taxon\r\npairs where speciation is often incomplete). Although the role of CRs in eukaryotic speciation at\r\na macroevolutionary level has been supported by associations between species diversity and\r\nrates of evolution of CRs across phylogenies, these findings are limited to a restricted range of\r\nCRs and taxa. Now that more broadly applicable and precise CR detection approaches have\r\nbecome available, we address the challenges in filling some of the conceptual and empirical\r\ngaps between micro- and macroevolutionary studies on the role of CRs in speciation. We\r\nsynthesize what is known about the macroevolutionary impact of CRs and suggest new research avenues to overcome the pitfalls of previous studies to gain a more comprehensive understanding of the evolutionary significance of CRs in speciation across the tree of life.","lang":"eng"}],"citation":{"mla":"Lucek, Kay, et al. “The Impact of Chromosomal Rearrangements in Speciation: From Micro- to Macroevolution.” Cold Spring Harbor Perspectives in Biology, vol. 15, no. 11, a041447, Cold Spring Harbor Laboratory, 2023, doi:10.1101/cshperspect.a041447.","ieee":"K. Lucek et al., “The impact of chromosomal rearrangements in speciation: From micro- to macroevolution,” Cold Spring Harbor Perspectives in Biology, vol. 15, no. 11. Cold Spring Harbor Laboratory, 2023.","short":"K. Lucek, M.D. Giménez, M. Joron, M. Rafajlović, J.B. Searle, N. Walden, A.M. Westram, R. Faria, Cold Spring Harbor Perspectives in Biology 15 (2023).","apa":"Lucek, K., Giménez, M. D., Joron, M., Rafajlović, M., Searle, J. B., Walden, N., … Faria, R. (2023). The impact of chromosomal rearrangements in speciation: From micro- to macroevolution. Cold Spring Harbor Perspectives in Biology. Cold Spring Harbor Laboratory. https://doi.org/10.1101/cshperspect.a041447","chicago":"Lucek, Kay, Mabel D. Giménez, Mathieu Joron, Marina Rafajlović, Jeremy B. Searle, Nora Walden, Anja M Westram, and Rui Faria. “The Impact of Chromosomal Rearrangements in Speciation: From Micro- to Macroevolution.” Cold Spring Harbor Perspectives in Biology. Cold Spring Harbor Laboratory, 2023. https://doi.org/10.1101/cshperspect.a041447.","ista":"Lucek K, Giménez MD, Joron M, Rafajlović M, Searle JB, Walden N, Westram AM, Faria R. 2023. The impact of chromosomal rearrangements in speciation: From micro- to macroevolution. Cold Spring Harbor Perspectives in Biology. 15(11), a041447.","ama":"Lucek K, Giménez MD, Joron M, et al. The impact of chromosomal rearrangements in speciation: From micro- to macroevolution. Cold Spring Harbor Perspectives in Biology. 2023;15(11). doi:10.1101/cshperspect.a041447"},"day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-08T12:52:29Z","publisher":"Cold Spring Harbor Laboratory","article_processing_charge":"No","pmid":1,"title":"The impact of chromosomal rearrangements in speciation: From micro- to macroevolution","article_number":"a041447","status":"public","article_type":"original","main_file_link":[{"url":"https://doi.org/10.1101/cshperspect.a041447","open_access":"1"}],"year":"2023","date_created":"2024-01-08T12:43:48Z","acknowledgement":"K.L. was funded by a Swiss National Science Foundation Eccellenza project: The evolution of strong reproductive barriers towards the completion of speciation (PCEFP3_202869). R.F.\r\nwas funded by an FCT CEEC (Fundação para a Ciênca e a Tecnologia, Concurso Estímulo ao\r\nEmprego Científico) contract (2020.00275. CEECIND) and by an FCT research project\r\n(PTDC/BIA-EVL/1614/2021). M.R. was funded by the Swedish Research Council Vetenskapsrådet (grant number 2021-05243). A.M.W. was partly funded by the Norwegian Research Council RCN. We thank Luis Silva for his help preparing Figure 1. We are grateful to Maren Wellenreuther, Daniel Bolnick, and two anonymous reviewers for their constructive feedback on an earlier version of this paper.","volume":15}]