[{"status":"public","author":[{"orcid":"0000-0002-0123-8649","first_name":"Daniel","full_name":"Zilberman, Daniel","last_name":"Zilberman","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"}],"extern":"1","oa_version":"Published Version","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_created":"2021-06-08T06:23:39Z","volume":20,"doi":"10.1016/j.devcel.2011.05.018","pmid":1,"external_id":{"pmid":["21664571"]},"date_published":"2011-06-14T00:00:00Z","day":"14","title":"Balancing parental contributions in plant embryonic gene activation","article_processing_charge":"No","date_updated":"2021-12-14T08:34:37Z","_id":"9522","year":"2011","publication_identifier":{"eissn":["1878-1551"],"issn":["1534-5807"]},"oa":1,"quality_controlled":"1","citation":{"ama":"Zilberman D. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>. Vol 20. Elsevier; 2011:735-736. doi:<a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">10.1016/j.devcel.2011.05.018</a>","chicago":"Zilberman, Daniel. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>. <i>Developmental Cell</i>. Vol. 20. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">https://doi.org/10.1016/j.devcel.2011.05.018</a>.","apa":"Zilberman, D. (2011). <i>Balancing parental contributions in plant embryonic gene activation</i>. <i>Developmental Cell</i> (Vol. 20, pp. 735–736). Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">https://doi.org/10.1016/j.devcel.2011.05.018</a>","ista":"Zilberman D. 2011. Balancing parental contributions in plant embryonic gene activation, Elsevier,p.","ieee":"D. Zilberman, <i>Balancing parental contributions in plant embryonic gene activation</i>, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.","short":"D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.","mla":"Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene Activation.” <i>Developmental Cell</i>, vol. 20, no. 6, Elsevier, 2011, pp. 735–36, doi:<a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">10.1016/j.devcel.2011.05.018</a>."},"publication_status":"published","language":[{"iso":"eng"}],"department":[{"_id":"DaZi"}],"abstract":[{"text":"Little is known about chromatin remodeling events immediately after fertilization. A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory pathways that silence transposable elements are responsible for global delayed activation of gene expression in the early Arabidopsis embryo.","lang":"eng"}],"publication":"Developmental Cell","publisher":"Elsevier","main_file_link":[{"url":"https://doi.org/10.1016/j.devcel.2011.05.018","open_access":"1"}],"type":"other_academic_publication","month":"06","intvolume":"        20","issue":"6","page":"735-736"},{"main_file_link":[{"open_access":"1","url":"http://hdl.handle.net/11441/30766"}],"type":"conference","month":"08","intvolume":"      6854","page":"286-293","citation":{"ista":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental algorithm for computing AT-models and persistent homology. Computer Analysis of Images and Patterns. CAIP: International Conference on Computer Analysis of Images and Patterns, LNCS, vol. 6854, 286–293.","ieee":"R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental algorithm for computing AT-models and persistent homology,” in <i>Computer Analysis of Images and Patterns</i>, Seville, Spain, 2011, vol. 6854, pp. 286–293.","short":"R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.","mla":"Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” <i>Computer Analysis of Images and Patterns</i>, vol. 6854, Springer Nature, 2011, pp. 286–93, doi:<a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">10.1007/978-3-642-23672-3_35</a>.","ama":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm for computing AT-models and persistent homology. In: <i>Computer Analysis of Images and Patterns</i>. Vol 6854. Springer Nature; 2011:286-293. doi:<a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">10.1007/978-3-642-23672-3_35</a>","apa":"Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., &#38; Poyatos, R. (2011). Incremental-decremental algorithm for computing AT-models and persistent homology. In <i>Computer Analysis of Images and Patterns</i> (Vol. 6854, pp. 286–293). Seville, Spain: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">https://doi.org/10.1007/978-3-642-23672-3_35</a>","chicago":"Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” In <i>Computer Analysis of Images and Patterns</i>, 6854:286–93. Springer Nature, 2011. <a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">https://doi.org/10.1007/978-3-642-23672-3_35</a>."},"alternative_title":["LNCS"],"quality_controlled":"1","publication_status":"published","language":[{"iso":"eng"}],"department":[{"_id":"HeEd"}],"abstract":[{"text":"In this paper, we establish a correspondence between the incremental algorithm for computing AT-models [8,9] and the one for computing persistent homology [6,14,15]. We also present a decremental algorithm for computing AT-models that allows to extend the persistence computation to a wider setting. Finally, we show how to combine incremental and decremental techniques for persistent homology computation.","lang":"eng"}],"publication":"Computer Analysis of Images and Patterns","scopus_import":"1","publisher":"Springer Nature","title":"Incremental-decremental algorithm for computing AT-models and persistent homology","article_processing_charge":"No","conference":{"start_date":"2011-08-29","end_date":"2011-08-31","name":"CAIP: International Conference on Computer Analysis of Images and Patterns","location":"Seville, Spain"},"_id":"9648","date_updated":"2021-08-12T13:53:17Z","year":"2011","publication_identifier":{"issn":["03029743"],"eissn":["16113349"],"isbn":["9783642236716"]},"oa":1,"status":"public","author":[{"last_name":"Gonzalez-Diaz","first_name":"Rocio","full_name":"Gonzalez-Diaz, Rocio"},{"full_name":"Ion, Adrian","first_name":"Adrian","id":"29F89302-F248-11E8-B48F-1D18A9856A87","last_name":"Ion"},{"first_name":"Maria Jose","full_name":"Jimenez, Maria Jose","last_name":"Jimenez"},{"last_name":"Poyatos","full_name":"Poyatos, Regina","first_name":"Regina"}],"oa_version":"Published Version","volume":6854,"date_created":"2021-07-11T22:01:19Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","doi":"10.1007/978-3-642-23672-3_35","date_published":"2011-08-01T00:00:00Z","day":"01"},{"abstract":[{"text":"Motivated by recent experiments on the material Ba3NiSb 2O9, we consider a spin-one quantum antiferromagnet on a triangular lattice with the Heisenberg bilinear and biquadratic exchange interactions and a single-ion anisotropy. Using a fermionic &quot;triplon&quot; representation for spins, we study the phase diagram within mean-field theory. In addition to a fully gapped spin-liquid ground state, we find a state where one gapless triplon mode with a Fermi surface coexists with d+id topological pairing of the other triplons. Despite the existence of a Fermi surface, this ground state has fully gapped bulk spin excitations. Such a state has linear in-temperature specific heat and constant in-plane spin susceptibility, with an unusually high Wilson ratio.","lang":"eng"}],"publist_id":"6432","publisher":"American Physical Society","day":"03","date_published":"2011-11-03T00:00:00Z","publication":"Physical Review B - Condensed Matter and Materials Physics","author":[{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn","first_name":"Maksym","full_name":"Maksym Serbyn","orcid":"0000-0002-2399-5827"},{"last_name":"Senthil","first_name":"Todadri","full_name":"Senthil, Todadri S"},{"last_name":"Lee","full_name":"Lee, Patrick","first_name":"Patrick"}],"status":"public","quality_controlled":0,"extern":1,"citation":{"short":"M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials Physics 84 (2011).","mla":"Serbyn, Maksym, et al. “Exotic S=1 Spin-Liquid State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 18, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">10.1103/PhysRevB.84.180403</a>.","ista":"Serbyn M, Senthil T, Lee P. 2011. Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. Physical Review B - Condensed Matter and Materials Physics. 84(18).","ieee":"M. Serbyn, T. Senthil, and P. Lee, “Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 18. American Physical Society, 2011.","apa":"Serbyn, M., Senthil, T., &#38; Lee, P. (2011). Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">https://doi.org/10.1103/PhysRevB.84.180403</a>","chicago":"Serbyn, Maksym, Todadri Senthil, and Patrick Lee. “Exotic S=1 Spin-Liquid State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">https://doi.org/10.1103/PhysRevB.84.180403</a>.","ama":"Serbyn M, Senthil T, Lee P. Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2011;84(18). doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">10.1103/PhysRevB.84.180403</a>"},"doi":"10.1103/PhysRevB.84.180403","date_created":"2018-12-11T11:49:27Z","publication_status":"published","volume":84,"year":"2011","intvolume":"        84","month":"11","oa":1,"issue":"18","main_file_link":[{"url":"https://arxiv.org/abs/1108.3070","open_access":"1"}],"title":"Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice","date_updated":"2021-01-12T08:22:18Z","type":"journal_article","_id":"967"},{"volume":106,"publication_status":"published","date_created":"2018-12-11T11:49:27Z","doi":"10.1103/PhysRevLett.106.139702","citation":{"chicago":"Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">https://doi.org/10.1103/PhysRevLett.106.139702</a>.","apa":"Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2011). Serbyn et al. Reply: <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">https://doi.org/10.1103/PhysRevLett.106.139702</a>","ama":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. Serbyn et al. Reply: <i>Physical Review Letters</i>. 2011;106(13). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">10.1103/PhysRevLett.106.139702</a>","short":"M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, Physical Review Letters 106 (2011).","mla":"Serbyn, Maksym, et al. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>, vol. 106, no. 13, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">10.1103/PhysRevLett.106.139702</a>.","ieee":"M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Serbyn et al. Reply:,” <i>Physical Review Letters</i>, vol. 106, no. 13. American Physical Society, 2011.","ista":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2011. Serbyn et al. Reply: Physical Review Letters. 106(13)."},"extern":1,"quality_controlled":0,"status":"public","author":[{"first_name":"Maksym","full_name":"Maksym Serbyn","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn"},{"last_name":"Skvortsov","full_name":"Skvortsov, Mikhail A","first_name":"Mikhail"},{"last_name":"Varlamov","full_name":"Varlamov, Andrei A","first_name":"Andrei"},{"last_name":"Galitski","first_name":"Victor","full_name":"Galitski, Victor M"}],"publication":"Physical Review Letters","date_published":"2011-04-01T00:00:00Z","day":"01","publisher":"American Physical Society","publist_id":"6433","abstract":[{"text":"A Reply to the Comment by Andrei Sergeev, M. Reizer, and V. Mitin.","lang":"eng"}],"_id":"968","type":"journal_article","date_updated":"2021-01-12T08:22:19Z","title":"Serbyn et al. Reply:","issue":"13","month":"04","year":"2011","intvolume":"       106"},{"title":"Isotope effect on the superfluid density in conventional and high-temperature superconductors","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1009.2429"}],"type":"journal_article","_id":"969","date_updated":"2021-01-12T08:22:19Z","month":"01","year":"2011","intvolume":"        83","issue":"2","oa":1,"extern":1,"citation":{"ieee":"M. Serbyn and P. Lee, “Isotope effect on the superfluid density in conventional and high-temperature superconductors,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 83, no. 2. American Physical Society, 2011.","ista":"Serbyn M, Lee P. 2011. Isotope effect on the superfluid density in conventional and high-temperature superconductors. Physical Review B - Condensed Matter and Materials Physics. 83(2).","mla":"Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density in Conventional and High-Temperature Superconductors.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 83, no. 2, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">10.1103/PhysRevB.83.024506</a>.","short":"M. Serbyn, P. Lee, Physical Review B - Condensed Matter and Materials Physics 83 (2011).","ama":"Serbyn M, Lee P. Isotope effect on the superfluid density in conventional and high-temperature superconductors. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2011;83(2). doi:<a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">10.1103/PhysRevB.83.024506</a>","apa":"Serbyn, M., &#38; Lee, P. (2011). Isotope effect on the superfluid density in conventional and high-temperature superconductors. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">https://doi.org/10.1103/PhysRevB.83.024506</a>","chicago":"Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density in Conventional and High-Temperature Superconductors.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">https://doi.org/10.1103/PhysRevB.83.024506</a>."},"author":[{"orcid":"0000-0002-2399-5827","full_name":"Maksym Serbyn","first_name":"Maksym","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Patrick","full_name":"Lee, Patrick","last_name":"Lee"}],"quality_controlled":0,"status":"public","volume":83,"date_created":"2018-12-11T11:49:28Z","publication_status":"published","doi":"10.1103/PhysRevB.83.024506","publist_id":"6434","abstract":[{"lang":"eng","text":"We investigate the isotope effect on the London penetration depth of a superconductor which measures n S/m*, the ratio of superfluid density to effective mass. We use a simplified model of electrons weakly coupled to a single phonon frequency ω E, but assume that the energy gap Δ does not have any isotope effect. Nevertheless, we find an isotope effect for n S/m* which is significant if Δ is sufficiently large that it becomes comparable to ω E, a regime of interest to high-T c cuprate superconductors and possibly other families of unconventional superconductors with relatively high T c. Our model is too simple to describe the cuprates and it gives the wrong sign of the isotope effect when compared with experiment, but it is a proof of principle that the isotope effect exists for n S/m* in materials where the pairing gap and T c are not of phonon origin and have no isotope effect."}],"publication":"Physical Review B - Condensed Matter and Materials Physics","date_published":"2011-01-19T00:00:00Z","publisher":"American Physical Society","day":"19"},{"citation":{"ama":"Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). 2011. doi:<a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>","chicago":"Palero, Ferran, Pere Abello, Enrique Macpherson, Mark Beaumont, and Marta Pascual. “Data from: Effect of Oceanographic Barriers and Overfishing on the Population Genetic Structure of the European Spiny Lobster (Palinurus Elephas).” IST Austria, 2011. <a href=\"https://doi.org/10.5061/dryad.299h8\">https://doi.org/10.5061/dryad.299h8</a>.","apa":"Palero, F., Abello, P., Macpherson, E., Beaumont, M., &#38; Pascual, M. (2011). Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). IST Austria. <a href=\"https://doi.org/10.5061/dryad.299h8\">https://doi.org/10.5061/dryad.299h8</a>","ieee":"F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.","ista":"Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas), IST Austria, <a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>.","mla":"Palero, Ferran, et al. <i>Data from: Effect of Oceanographic Barriers and Overfishing on the Population Genetic Structure of the European Spiny Lobster (Palinurus Elephas)</i>. IST Austria, 2011, doi:<a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>.","short":"F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011)."},"author":[{"orcid":"0000-0002-0343-8329","first_name":"Ferran","full_name":"Palero, Ferran","last_name":"Palero","id":"3F0E2A22-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Abello","first_name":"Pere","full_name":"Abello, Pere"},{"last_name":"Macpherson","full_name":"Macpherson, Enrique","first_name":"Enrique"},{"last_name":"Beaumont","first_name":"Mark","full_name":"Beaumont, Mark"},{"first_name":"Marta","full_name":"Pascual, Marta","last_name":"Pascual"}],"status":"public","oa_version":"Published Version","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-08-02T07:11:19Z","doi":"10.5061/dryad.299h8","department":[{"_id":"NiBa"}],"abstract":[{"text":"Defining population structure and genetic diversity levels is of the utmost importance for developing efficient conservation strategies. Overfishing has caused mean annual catches of the European spiny lobster (Palinurus elephas) to decrease alarmingly along its distribution area. In this context, there is a need for comprehensive studies to evaluate the genetic health of the exploited populations. The present work is based on a set of 10 nuclear markers amplified in 331 individuals from 10 different localities covering most of P. elephas distribution area. Samples from Atlantic and Mediterranean basins showed small but significant differences, indicating that P. elephas populations do not behave as a single panmictic unit but form two partially-overlapping groups. Despite intense overfishing, our dataset did not recover a recent bottleneck signal, and showed a large and stable historical effective size instead. This result could be accounted for by specific life history traits (reproduction and longevity) and the limitations of molecular markers in covering very recent timescales for non temporal samples. Our study emphasizes the necessity of integrating information on effective population sizes and life history parameters when evaluating population connectivity levels from genetic data.","lang":"eng"}],"date_published":"2011-05-12T00:00:00Z","publisher":"IST Austria","day":"12","title":"Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas)","article_processing_charge":"No","main_file_link":[{"url":"https://doi.org/10.5061/dryad.299h8","open_access":"1"}],"related_material":{"record":[{"id":"3395","status":"public","relation":"used_in_publication"}]},"type":"research_data_reference","_id":"9762","date_updated":"2023-02-23T11:25:25Z","month":"05","year":"2011","oa":1},{"month":"06","year":"2011","publication_identifier":{"isbn":["978-1-4244-4127-3"],"eissn":["1945-8452"],"issn":["1945-7928"]},"oa":1,"title":"Ilastik: Interactive learning and segmentation toolkit","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://www.researchgate.net/publication/224241106_Ilastik_Interactive_learning_and_segmentation_toolkit"}],"conference":{"location":"Chicago, Illinois, USA","name":"ISBI: International Symposium on Biomedical Imaging","start_date":"2011-03-30","end_date":"2011-04-02"},"type":"conference","_id":"9943","date_updated":"2023-02-23T14:13:38Z","language":[{"iso":"eng"}],"department":[{"_id":"Bio"}],"abstract":[{"lang":"eng","text":"Segmentation is the process of partitioning digital images into meaningful regions. The analysis of biological high content images often requires segmentation as a first step. We propose ilastik as an easy-to-use tool which allows the user without expertise in image processing to perform segmentation and classification in a unified way. ilastik learns from labels provided by the user through a convenient mouse interface. Based on these labels, ilastik infers a problem specific segmentation. A random forest classifier is used in the learning step, in which each pixel's neighborhood is characterized by a set of generic (nonlinear) features. ilastik supports up to three spatial plus one spectral dimension and makes use of all dimensions in the feature calculation. ilastik provides realtime feedback that enables the user to interactively refine the segmentation result and hence further fine-tune the classifier. An uncertainty measure guides the user to ambiguous regions in the images. Real time performance is achieved by multi-threading which fully exploits the capabilities of modern multi-core machines. Once a classifier has been trained on a set of representative images, it can be exported and used to automatically process a very large number of images (e.g. using the CellProfiler pipeline). ilastik is an open source project and released under the BSD license at www.ilastik.org."}],"publication":"2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro","date_published":"2011-06-09T00:00:00Z","publisher":"Institute of Electrical and Electronics Engineers","day":"09","extern":"1","keyword":["image segmentation","biomedical imaging","three dimensional displays","neurons","retina","observers","image color analysis"],"citation":{"short":"C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011.","mla":"Sommer, Christoph M., et al. “Ilastik: Interactive Learning and Segmentation Toolkit.” <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>, Institute of Electrical and Electronics Engineers, 2011, doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872394\">10.1109/isbi.2011.5872394</a>.","ieee":"C. M. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, “Ilastik: Interactive learning and segmentation toolkit,” in <i>2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro</i>, Chicago, Illinois, USA, 2011.","ista":"Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging.","chicago":"Sommer, Christoph M, Christoph Straehle, Ullrich Köthe, and Fred A. Hamprecht. “Ilastik: Interactive Learning and Segmentation Toolkit.” In <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers, 2011. <a href=\"https://doi.org/10.1109/isbi.2011.5872394\">https://doi.org/10.1109/isbi.2011.5872394</a>.","apa":"Sommer, C. M., Straehle, C., Köthe, U., &#38; Hamprecht, F. A. (2011). Ilastik: Interactive learning and segmentation toolkit. In <i>2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro</i>. Chicago, Illinois, USA: Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/isbi.2011.5872394\">https://doi.org/10.1109/isbi.2011.5872394</a>","ama":"Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning and segmentation toolkit. In: <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers; 2011. doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872394\">10.1109/isbi.2011.5872394</a>"},"status":"public","quality_controlled":"1","author":[{"first_name":"Christoph M","full_name":"Sommer, Christoph M","orcid":"0000-0003-1216-9105","id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","last_name":"Sommer"},{"full_name":"Straehle, Christoph","first_name":"Christoph","last_name":"Straehle"},{"last_name":"Köthe","first_name":"Ullrich","full_name":"Köthe, Ullrich"},{"last_name":"Hamprecht","full_name":"Hamprecht, Fred A.","first_name":"Fred A."}],"oa_version":"Preprint","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_status":"published","date_created":"2021-08-19T11:49:58Z","doi":"10.1109/isbi.2011.5872394"},{"oa_version":"None","status":"public","author":[{"last_name":"Artner","full_name":"Artner, Nicole M.","first_name":"Nicole M."},{"full_name":"Ion, Adrian","first_name":"Adrian","id":"29F89302-F248-11E8-B48F-1D18A9856A87","last_name":"Ion"},{"last_name":"Kropatsch","first_name":"Walter G.","full_name":"Kropatsch, Walter G."}],"doi":"10.1007/978-3-642-20844-7_22","date_created":"2022-03-21T08:08:35Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","volume":6658,"day":"01","date_published":"2011-06-01T00:00:00Z","article_processing_charge":"No","title":"Spatio-temporal extraction of articulated models in a graph pyramid","date_updated":"2023-09-05T14:10:15Z","_id":"10907","conference":{"start_date":"2011-05-18","end_date":"2011-05-20","name":"GbRPR: Graph-based Representations in Pattern Recognition","location":"Münster, Germany"},"place":"Berlin, Heidelberg","year":"2011","acknowledgement":"This work has been partially supported by the Austrian Science Fund under grants S9103-N13 and P18716-N13.","publication_identifier":{"isbn":["9783642208430"],"eisbn":["9783642208447"],"issn":["0302-9743"],"eissn":["1611-3349"]},"quality_controlled":"1","alternative_title":["LNCS"],"series_title":"LNIP","citation":{"chicago":"Artner, Nicole M., Adrian Ion, and Walter G. Kropatsch. “Spatio-Temporal Extraction of Articulated Models in a Graph Pyramid.” In <i>Graph-Based Representations in Pattern Recognition</i>, edited by Xiaoyi Jiang, Miquel Ferrer, and Andrea Torsello, 6658:215–24. LNIP. Berlin, Heidelberg: Springer, 2011. <a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">https://doi.org/10.1007/978-3-642-20844-7_22</a>.","apa":"Artner, N. M., Ion, A., &#38; Kropatsch, W. G. (2011). Spatio-temporal extraction of articulated models in a graph pyramid. In X. Jiang, M. Ferrer, &#38; A. Torsello (Eds.), <i>Graph-Based Representations in Pattern Recognition</i> (Vol. 6658, pp. 215–224). Berlin, Heidelberg: Springer. <a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">https://doi.org/10.1007/978-3-642-20844-7_22</a>","ama":"Artner NM, Ion A, Kropatsch WG. Spatio-temporal extraction of articulated models in a graph pyramid. In: Jiang X, Ferrer M, Torsello A, eds. <i>Graph-Based Representations in Pattern Recognition</i>. Vol 6658. LNIP. Berlin, Heidelberg: Springer; 2011:215-224. doi:<a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">10.1007/978-3-642-20844-7_22</a>","short":"N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin, Heidelberg, 2011, pp. 215–224.","mla":"Artner, Nicole M., et al. “Spatio-Temporal Extraction of Articulated Models in a Graph Pyramid.” <i>Graph-Based Representations in Pattern Recognition</i>, edited by Xiaoyi Jiang et al., vol. 6658, Springer, 2011, pp. 215–24, doi:<a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">10.1007/978-3-642-20844-7_22</a>.","ieee":"N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of articulated models in a graph pyramid,” in <i>Graph-Based Representations in Pattern Recognition</i>, Münster, Germany, 2011, vol. 6658, pp. 215–224.","ista":"Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated models in a graph pyramid. Graph-Based Representations in Pattern Recognition. GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658, 215–224."},"publication_status":"published","abstract":[{"text":"This paper presents a method to create a model of an articulated object using the planar motion in an initialization video. The model consists of rigid parts connected by points of articulation. The rigid parts are described by the positions of salient feature-points tracked throughout the video. Following a filtering step that identifies points that belong to different objects, rigid parts are found by a grouping process in a graph pyramid. Valid articulation points are selected by verifying multiple hypotheses for each pair of parts.","lang":"eng"}],"editor":[{"first_name":"Xiaoyi","full_name":"Jiang, Xiaoyi","last_name":"Jiang"},{"last_name":"Ferrer","first_name":"Miquel","full_name":"Ferrer, Miquel"},{"last_name":"Torsello","full_name":"Torsello, Andrea","first_name":"Andrea"}],"department":[{"_id":"HeEd"}],"language":[{"iso":"eng"}],"publisher":"Springer","scopus_import":"1","publication":"Graph-Based Representations in Pattern Recognition","type":"conference","intvolume":"      6658","month":"06","page":"215-224"},{"year":"2011","publication_identifier":{"eissn":["1540-8140"],"issn":["0021-9525"]},"oa":1,"article_processing_charge":"No","title":"POM121 and Sun1 play a role in early steps of interphase NPC assembly","_id":"11094","date_updated":"2022-07-18T08:53:46Z","external_id":{"pmid":["21727197"]},"date_published":"2011-07-04T00:00:00Z","day":"04","extern":"1","status":"public","author":[{"first_name":"Jessica A.","full_name":"Talamas, Jessica A.","last_name":"Talamas"},{"last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","first_name":"Martin W"}],"oa_version":"Published Version","volume":194,"date_created":"2022-04-07T07:52:18Z","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","pmid":1,"doi":"10.1083/jcb.201012154","month":"07","intvolume":"       194","issue":"1","page":"27-37","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1083/jcb.201012154"}],"type":"journal_article","language":[{"iso":"eng"}],"abstract":[{"text":"Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear envelope (NE) reformation and into an intact NE as cells progress through interphase. Although recent studies have shown that NPC formation occurs by two different molecular mechanisms at two distinct cell cycle stages, little is known about the molecular players that mediate the fusion of the outer and inner nuclear membranes to form pores. In this paper, we provide evidence that the transmembrane nucleoporin (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the INM and ONM. Additionally, Sun1, an INM protein that is known to interact with the cytoskeleton, was specifically required for interphase assembly and localized with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact transiently to promote early steps of interphase NPC assembly.","lang":"eng"}],"publication":"Journal of Cell Biology","scopus_import":"1","publisher":"Rockefeller University Press","keyword":["Cell Biology"],"citation":{"ieee":"J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller University Press, pp. 27–37, 2011.","ista":"Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.","mla":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no. 1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href=\"https://doi.org/10.1083/jcb.201012154\">10.1083/jcb.201012154</a>.","short":"J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.","ama":"Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href=\"https://doi.org/10.1083/jcb.201012154\">10.1083/jcb.201012154</a>","apa":"Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.201012154\">https://doi.org/10.1083/jcb.201012154</a>","chicago":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2011. <a href=\"https://doi.org/10.1083/jcb.201012154\">https://doi.org/10.1083/jcb.201012154</a>."},"quality_controlled":"1","publication_status":"published","article_type":"original"},{"month":"06","intvolume":"        23","issue":"3","page":"255-257","type":"journal_article","language":[{"iso":"eng"}],"scopus_import":"1","publication":"Current Opinion in Cell Biology","publisher":"Elsevier","quality_controlled":"1","keyword":["Cell Biology"],"citation":{"chicago":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">https://doi.org/10.1016/j.ceb.2011.04.013</a>.","apa":"Hetzer, M., &#38; Cavalli, G. (2011). Editorial overview. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">https://doi.org/10.1016/j.ceb.2011.04.013</a>","ama":"Hetzer M, Cavalli G. Editorial overview. <i>Current Opinion in Cell Biology</i>. 2011;23(3):255-257. doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">10.1016/j.ceb.2011.04.013</a>","short":"M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.","mla":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">10.1016/j.ceb.2011.04.013</a>.","ieee":"M. Hetzer and G. Cavalli, “Editorial overview,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.","ista":"Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology. 23(3), 255–257."},"publication_status":"published","article_type":"letter_note","year":"2011","publication_identifier":{"issn":["0955-0674"]},"article_processing_charge":"No","title":"Editorial overview","date_updated":"2022-07-18T08:39:40Z","_id":"11095","external_id":{"pmid":["21592757"]},"date_published":"2011-06-01T00:00:00Z","day":"01","status":"public","author":[{"full_name":"HETZER, Martin W","first_name":"Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER"},{"full_name":"Cavalli, Giacomo","first_name":"Giacomo","last_name":"Cavalli"}],"extern":"1","oa_version":"None","date_created":"2022-04-07T07:52:27Z","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","volume":23,"doi":"10.1016/j.ceb.2011.04.013","pmid":1},{"external_id":{"pmid":["21030234"]},"day":"01","date_published":"2011-02-01T00:00:00Z","oa_version":"None","extern":"1","status":"public","author":[{"first_name":"Yun","full_name":"Liang, Yun","last_name":"Liang"},{"first_name":"Martin W","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER"}],"doi":"10.1016/j.ceb.2010.09.008","pmid":1,"volume":23,"date_created":"2022-04-07T07:52:37Z","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","year":"2011","publication_identifier":{"issn":["0955-0674"]},"article_processing_charge":"No","title":"Functional interactions between nucleoporins and chromatin","_id":"11096","date_updated":"2022-07-18T08:53:48Z","abstract":[{"text":"As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes (NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm. In recent years, transport-independent functions of NPC components, nucleoporins, have been identified including roles in chromatin organization and gene regulation. Here, we summarize our current view of the NPC as a dynamic hub for the integration of chromatin regulation and nuclear trafficking and discuss the functional interplay between nucleoporins and the nuclear genome.","lang":"eng"}],"language":[{"iso":"eng"}],"publisher":"Elsevier","scopus_import":"1","publication":"Current Opinion in Cell Biology","citation":{"mla":"Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins and Chromatin.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1, Elsevier, 2011, pp. 65–70, doi:<a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">10.1016/j.ceb.2010.09.008</a>.","short":"Y. Liang, M. Hetzer, Current Opinion in Cell Biology 23 (2011) 65–70.","ista":"Liang Y, Hetzer M. 2011. Functional interactions between nucleoporins and chromatin. Current Opinion in Cell Biology. 23(1), 65–70.","ieee":"Y. Liang and M. Hetzer, “Functional interactions between nucleoporins and chromatin,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 1. Elsevier, pp. 65–70, 2011.","apa":"Liang, Y., &#38; Hetzer, M. (2011). Functional interactions between nucleoporins and chromatin. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">https://doi.org/10.1016/j.ceb.2010.09.008</a>","chicago":"Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins and Chromatin.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">https://doi.org/10.1016/j.ceb.2010.09.008</a>.","ama":"Liang Y, Hetzer M. Functional interactions between nucleoporins and chromatin. <i>Current Opinion in Cell Biology</i>. 2011;23(1):65-70. doi:<a href=\"https://doi.org/10.1016/j.ceb.2010.09.008\">10.1016/j.ceb.2010.09.008</a>"},"keyword":["Cell Biology"],"quality_controlled":"1","article_type":"original","publication_status":"published","intvolume":"        23","month":"02","page":"65-70","issue":"1","type":"journal_article"},{"intvolume":"        75","month":"04","page":"585-597","type":"journal_article","abstract":[{"text":"Eukaryotic cell function depends on the physical separation of nucleoplasmic and cytoplasmic components by the nuclear envelope (NE). Molecular communication between the two compartments involves active, signal-mediated trafficking, a function that is exclusively performed by nuclear pore complexes (NPCs). The individual NPC components and the mechanisms that are involved in nuclear trafficking are well documented and have become textbook knowledge. However, in addition to their roles as nuclear gatekeepers, NPC components-nucleoporins-have been shown to have critical roles in chromatin organization and gene regulation. These findings have sparked new enthusiasm to study the roles of this multiprotein complex in nuclear organization and explore novel functions that in some cases appear to go beyond a role in transport. Here, we discuss our present view of NPC biogenesis, which is tightly linked to proper cell cycle progression and cell differentiation. In addition, we summarize new data suggesting that NPCs represent dynamic hubs for the integration of gene regulation and nuclear transport processes.","lang":"eng"}],"language":[{"iso":"eng"}],"publisher":"Cold Spring Harbor Laboratory Press","publication":"Cold Spring Harbor Symposia on Quantitative Biology","scopus_import":"1","keyword":["Genetics","Molecular Biology","Biochemistry"],"citation":{"short":"M. Capelson, C. Doucet, M. Hetzer, Cold Spring Harbor Symposia on Quantitative Biology 75 (2011) 585–597.","mla":"Capelson, M., et al. “Nuclear Pore Complexes: Guardians of the Nuclear Genome.” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>, vol. 75, Cold Spring Harbor Laboratory Press, 2011, pp. 585–97, doi:<a href=\"https://doi.org/10.1101/sqb.2010.75.059\">10.1101/sqb.2010.75.059</a>.","ista":"Capelson M, Doucet C, Hetzer M. 2011. Nuclear pore complexes: Guardians of the nuclear genome. Cold Spring Harbor Symposia on Quantitative Biology. 75, 585–597.","ieee":"M. Capelson, C. Doucet, and M. Hetzer, “Nuclear pore complexes: Guardians of the nuclear genome,” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>, vol. 75. Cold Spring Harbor Laboratory Press, pp. 585–597, 2011.","apa":"Capelson, M., Doucet, C., &#38; Hetzer, M. (2011). Nuclear pore complexes: Guardians of the nuclear genome. <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. Cold Spring Harbor Laboratory Press. <a href=\"https://doi.org/10.1101/sqb.2010.75.059\">https://doi.org/10.1101/sqb.2010.75.059</a>","chicago":"Capelson, M., C. Doucet, and Martin Hetzer. “Nuclear Pore Complexes: Guardians of the Nuclear Genome.” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. Cold Spring Harbor Laboratory Press, 2011. <a href=\"https://doi.org/10.1101/sqb.2010.75.059\">https://doi.org/10.1101/sqb.2010.75.059</a>.","ama":"Capelson M, Doucet C, Hetzer M. Nuclear pore complexes: Guardians of the nuclear genome. <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. 2011;75:585-597. doi:<a href=\"https://doi.org/10.1101/sqb.2010.75.059\">10.1101/sqb.2010.75.059</a>"},"quality_controlled":"1","article_type":"original","publication_status":"published","year":"2011","publication_identifier":{"issn":["0091-7451","1943-4456"],"isbn":["9781936113071"]},"article_processing_charge":"No","title":"Nuclear pore complexes: Guardians of the nuclear genome","_id":"11100","date_updated":"2022-07-18T08:54:23Z","external_id":{"pmid":["21502404"]},"day":"18","date_published":"2011-04-18T00:00:00Z","oa_version":"None","extern":"1","status":"public","author":[{"last_name":"Capelson","full_name":"Capelson, M.","first_name":"M."},{"last_name":"Doucet","first_name":"C.","full_name":"Doucet, C."},{"orcid":"0000-0002-2111-992X","first_name":"Martin W","full_name":"HETZER, Martin W","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"}],"doi":"10.1101/sqb.2010.75.059","pmid":1,"volume":75,"date_created":"2022-04-07T07:53:18Z","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd"},{"publication_status":"published","citation":{"ieee":"S. R. Waitukaitis, H. Grütjen, J. Royer, and H. Jaeger, “Droplet and cluster formation in freely falling granular streams,” <i>Physical Review E</i>, vol. 83, no. 5. American Physical Society, 2011.","ista":"Waitukaitis SR, Grütjen H, Royer J, Jaeger H. 2011. Droplet and cluster formation in freely falling granular streams. Physical Review E. 83(5), 051302.","short":"S.R. Waitukaitis, H. Grütjen, J. Royer, H. Jaeger, Physical Review E 83 (2011).","mla":"Waitukaitis, Scott R., et al. “Droplet and Cluster Formation in Freely Falling Granular Streams.” <i>Physical Review E</i>, vol. 83, no. 5, 051302, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevE.83.051302\">10.1103/PhysRevE.83.051302</a>.","ama":"Waitukaitis SR, Grütjen H, Royer J, Jaeger H. Droplet and cluster formation in freely falling granular streams. <i>Physical Review E</i>. 2011;83(5). doi:<a href=\"https://doi.org/10.1103/PhysRevE.83.051302\">10.1103/PhysRevE.83.051302</a>","chicago":"Waitukaitis, Scott R, Helge Grütjen, John Royer, and Heinrich Jaeger. “Droplet and Cluster Formation in Freely Falling Granular Streams.” <i>Physical Review E</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevE.83.051302\">https://doi.org/10.1103/PhysRevE.83.051302</a>.","apa":"Waitukaitis, S. R., Grütjen, H., Royer, J., &#38; Jaeger, H. (2011). Droplet and cluster formation in freely falling granular streams. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevE.83.051302\">https://doi.org/10.1103/PhysRevE.83.051302</a>"},"quality_controlled":"1","publisher":"American Physical Society","publication":"Physical Review E","abstract":[{"text":"Particle beams are important tools for probing atomic and molecular interactions. Here we demonstrate that particle beams also offer a unique opportunity to investigate interactions in macroscopic systems, such as granular media. Motivated by recent experiments on streams of grains that exhibit liquid-like breakup into droplets, we use molecular dynamics simulations to investigate the evolution of a dense stream of macroscopic spheres accelerating out of an opening at the bottom of a reservoir. We show how nanoscale details associated with energy dissipation during collisions modify the stream\\'s macroscopic behavior. We find that inelastic collisions collimate the stream, while the presence of short-range attractive interactions drives structure formation. Parameterizing the collision dynamics by the coefficient of restitution (i.e., the ratio of relative velocities before and after impact) and the strength of the cohesive interaction, we map out a spectrum of behaviors that ranges from gaslike jets in which all grains drift apart to liquid-like streams that break into large droplets containing hundreds of grains. We also find a new, intermediate regime in which small aggregates form by capture from the gas phase, similar to what can be observed in molecular beams. Our results show that nearly all aspects of stream behavior are closely related to the velocity gradient associated with vertical free fall. Led by this observation, we propose a simple energy balance model to explain the droplet formation process. The qualitative as well as many quantitative features of the simulations and the model compare well with available experimental data and provide a first quantitative measure of the role of attractions in freely cooling granular streams.","lang":"eng"}],"language":[{"iso":"eng"}],"publist_id":"7942","type":"journal_article","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1006.1371"}],"issue":"5","article_number":"051302","intvolume":"        83","month":"05","doi":"10.1103/PhysRevE.83.051302","volume":83,"date_created":"2018-12-11T11:44:41Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","extern":"1","status":"public","author":[{"orcid":"0000-0002-2299-3176","first_name":"Scott R","full_name":"Waitukaitis, Scott R","last_name":"Waitukaitis","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Grütjen","first_name":"Helge","full_name":"Grütjen, Helge"},{"last_name":"Royer","full_name":"Royer, John","first_name":"John"},{"last_name":"Jaeger","first_name":"Heinrich","full_name":"Jaeger, Heinrich"}],"day":"12","date_published":"2011-05-12T00:00:00Z","external_id":{"arxiv":["1006.1371"]},"_id":"112","date_updated":"2021-01-12T06:48:25Z","title":"Droplet and cluster formation in freely falling granular streams","oa":1,"year":"2011","acknowledgement":"This work was supported by the NSF through CBET-0933242. We acknowledge use of shared facilities provided by the Keck Facility for Ultrafast Imaging at the University of Chicago and by the Chicago MRSEC through NSF DMR-0820054. Software support by Itasca Consulting Group, Inc., under the Itasca Educational Partnership is gratefully acknowledged. H.G. thanks the German-American Fulbright Commission for fellowship support during his stay at the University of Chicago."},{"day":"01","date_published":"2011-07-01T00:00:00Z","doi":"10.1145/1993053.1993057","date_created":"2022-07-27T13:48:11Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":5,"oa_version":"None","author":[{"last_name":"Baykan","full_name":"Baykan, Eda","first_name":"Eda"},{"full_name":"Henzinger, Monika H","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","last_name":"Henzinger"},{"first_name":"Ludmila","full_name":"Marian, Ludmila","last_name":"Marian"},{"full_name":"Weber, Ingmar","first_name":"Ingmar","last_name":"Weber"}],"status":"public","extern":"1","publication_identifier":{"issn":["1559-1131"],"eissn":["1559-114X"]},"year":"2011","date_updated":"2022-09-12T08:46:56Z","_id":"11673","title":"A comprehensive study of features and algorithms for URL-based topic classification","article_processing_charge":"No","publisher":"Association for Computing Machinery","publication":"ACM Transactions on the Web","scopus_import":"1","abstract":[{"lang":"eng","text":"Given only the URL of a Web page, can we identify its topic? We study this problem in detail by exploring a large number of different feature sets and algorithms on several datasets. We also show that the inherent overlap between topics and the sparsity of the information in URLs makes this a very challenging problem. Web page classification without a page’s content is desirable when the content is not available at all, when a classification is needed before obtaining the content, or when classification speed is of utmost importance. For our experiments we used five different corpora comprising a total of about 3 million (URL, classification) pairs. We evaluated several techniques for feature generation and classification algorithms. The individual binary classifiers were then combined via boosting into metabinary classifiers. We achieve typical F-measure values between 80 and 85, and a typical precision of around 86. The precision can be pushed further over 90 while maintaining a typical level of recall between 30 and 40."}],"language":[{"iso":"eng"}],"article_type":"original","publication_status":"published","quality_controlled":"1","keyword":["Topic classification","URL","ODP"],"citation":{"mla":"Baykan, Eda, et al. “A Comprehensive Study of Features and Algorithms for URL-Based Topic Classification.” <i>ACM Transactions on the Web</i>, vol. 5, no. 3, 15, Association for Computing Machinery, 2011, doi:<a href=\"https://doi.org/10.1145/1993053.1993057\">10.1145/1993053.1993057</a>.","short":"E. Baykan, M.H. Henzinger, L. Marian, I. Weber, ACM Transactions on the Web 5 (2011).","ieee":"E. Baykan, M. H. Henzinger, L. Marian, and I. Weber, “A comprehensive study of features and algorithms for URL-based topic classification,” <i>ACM Transactions on the Web</i>, vol. 5, no. 3. Association for Computing Machinery, 2011.","ista":"Baykan E, Henzinger MH, Marian L, Weber I. 2011. A comprehensive study of features and algorithms for URL-based topic classification. ACM Transactions on the Web. 5(3), 15.","apa":"Baykan, E., Henzinger, M. H., Marian, L., &#38; Weber, I. (2011). A comprehensive study of features and algorithms for URL-based topic classification. <i>ACM Transactions on the Web</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/1993053.1993057\">https://doi.org/10.1145/1993053.1993057</a>","chicago":"Baykan, Eda, Monika H Henzinger, Ludmila Marian, and Ingmar Weber. “A Comprehensive Study of Features and Algorithms for URL-Based Topic Classification.” <i>ACM Transactions on the Web</i>. Association for Computing Machinery, 2011. <a href=\"https://doi.org/10.1145/1993053.1993057\">https://doi.org/10.1145/1993053.1993057</a>.","ama":"Baykan E, Henzinger MH, Marian L, Weber I. A comprehensive study of features and algorithms for URL-based topic classification. <i>ACM Transactions on the Web</i>. 2011;5(3). doi:<a href=\"https://doi.org/10.1145/1993053.1993057\">10.1145/1993053.1993057</a>"},"issue":"3","intvolume":"         5","article_number":"15","month":"07","type":"journal_article"},{"citation":{"ama":"Dütting P, Henzinger MH, Weber I. Offline file assignments for online load balancing. <i>Information Processing Letters</i>. 2011;111(4):178-183. doi:<a href=\"https://doi.org/10.1016/j.ipl.2010.11.022\">10.1016/j.ipl.2010.11.022</a>","apa":"Dütting, P., Henzinger, M. H., &#38; Weber, I. (2011). Offline file assignments for online load balancing. <i>Information Processing Letters</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ipl.2010.11.022\">https://doi.org/10.1016/j.ipl.2010.11.022</a>","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Offline File Assignments for Online Load Balancing.” <i>Information Processing Letters</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.ipl.2010.11.022\">https://doi.org/10.1016/j.ipl.2010.11.022</a>.","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Offline file assignments for online load balancing,” <i>Information Processing Letters</i>, vol. 111, no. 4. Elsevier, pp. 178–183, 2011.","ista":"Dütting P, Henzinger MH, Weber I. 2011. Offline file assignments for online load balancing. Information Processing Letters. 111(4), 178–183.","short":"P. Dütting, M.H. Henzinger, I. Weber, Information Processing Letters 111 (2011) 178–183.","mla":"Dütting, Paul, et al. “Offline File Assignments for Online Load Balancing.” <i>Information Processing Letters</i>, vol. 111, no. 4, Elsevier, 2011, pp. 178–83, doi:<a href=\"https://doi.org/10.1016/j.ipl.2010.11.022\">10.1016/j.ipl.2010.11.022</a>."},"extern":"1","quality_controlled":"1","author":[{"last_name":"Dütting","first_name":"Paul","full_name":"Dütting, Paul"},{"full_name":"Henzinger, Monika H","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","last_name":"Henzinger"},{"first_name":"Ingmar","full_name":"Weber, Ingmar","last_name":"Weber"}],"status":"public","oa_version":"None","volume":111,"date_created":"2022-08-08T11:33:03Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","doi":"10.1016/j.ipl.2010.11.022","article_type":"original","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We study a novel load balancing problem that arises in web search engines. The problem is a combination of an offline assignment problem, where files need to be (copied and) assigned to machines, and an online load balancing problem, where requests ask for specific files and need to be assigned to a corresponding machine, whose load is increased\r\nby this. We present simple deterministic algorithms for this problem and exhibit an interesting trade-off between the available space to make file copies and the obtainable makespan. We also give non-trivial lower bounds for a large class of deterministic algorithms and present a randomized algorithm that beats these bounds with high probability."}],"publication":"Information Processing Letters","scopus_import":"1","date_published":"2011-01-15T00:00:00Z","publisher":"Elsevier","day":"15","title":"Offline file assignments for online load balancing","article_processing_charge":"No","type":"journal_article","_id":"11760","date_updated":"2022-09-12T09:38:05Z","month":"01","intvolume":"       111","year":"2011","issue":"4","publication_identifier":{"issn":["0020-0190"]},"page":"178-183"},{"article_processing_charge":"No","title":"Multi-parameter mechanism design under budget and matroid constraints","conference":{"name":"ESA: European Symposium on Algorithms","location":"Saarbrücken, Germany","start_date":"2011-09-05","end_date":"2011-09-09"},"type":"conference","_id":"11796","date_updated":"2023-02-13T11:32:41Z","month":"09","year":"2011","intvolume":"      6942","publication_identifier":{"issn":["1611-3349"],"isbn":["9783642237188"]},"page":"192–202","citation":{"ama":"Henzinger MH, Vidali A. Multi-parameter mechanism design under budget and matroid constraints. In: <i>19th Annual European Symposium on Algorithms</i>. Vol 6942. Springer Nature; 2011:192–202. doi:<a href=\"https://doi.org/10.1007/978-3-642-23719-5_17\">10.1007/978-3-642-23719-5_17</a>","chicago":"Henzinger, Monika H, and Angelina Vidali. “Multi-Parameter Mechanism Design under Budget and Matroid Constraints.” In <i>19th Annual European Symposium on Algorithms</i>, 6942:192–202. Springer Nature, 2011. <a href=\"https://doi.org/10.1007/978-3-642-23719-5_17\">https://doi.org/10.1007/978-3-642-23719-5_17</a>.","apa":"Henzinger, M. H., &#38; Vidali, A. (2011). Multi-parameter mechanism design under budget and matroid constraints. In <i>19th Annual European Symposium on Algorithms</i> (Vol. 6942, pp. 192–202). Saarbrücken, Germany: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-23719-5_17\">https://doi.org/10.1007/978-3-642-23719-5_17</a>","ieee":"M. H. Henzinger and A. Vidali, “Multi-parameter mechanism design under budget and matroid constraints,” in <i>19th Annual European Symposium on Algorithms</i>, Saarbrücken, Germany, 2011, vol. 6942, pp. 192–202.","ista":"Henzinger MH, Vidali A. 2011. Multi-parameter mechanism design under budget and matroid constraints. 19th Annual European Symposium on Algorithms. ESA: European Symposium on Algorithms, LNCS, vol. 6942, 192–202.","mla":"Henzinger, Monika H., and Angelina Vidali. “Multi-Parameter Mechanism Design under Budget and Matroid Constraints.” <i>19th Annual European Symposium on Algorithms</i>, vol. 6942, Springer Nature, 2011, pp. 192–202, doi:<a href=\"https://doi.org/10.1007/978-3-642-23719-5_17\">10.1007/978-3-642-23719-5_17</a>.","short":"M.H. Henzinger, A. Vidali, in:, 19th Annual European Symposium on Algorithms, Springer Nature, 2011, pp. 192–202."},"extern":"1","alternative_title":["LNCS"],"status":"public","author":[{"full_name":"Henzinger, Monika H","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","last_name":"Henzinger"},{"full_name":"Vidali, Angelina","first_name":"Angelina","last_name":"Vidali"}],"quality_controlled":"1","oa_version":"None","volume":6942,"publication_status":"published","date_created":"2022-08-11T11:51:39Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1007/978-3-642-23719-5_17","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"The design of truthful auctions that approximate the optimal expected revenue is a central problem in algorithmic mechanism design. 30 years after Myerson’s characterization of Bayesian optimal auctions in single-parameter domains [8], characterizing but also providing efficient mechanisms for multi-parameter domains still remains a very important unsolved problem. Our work improves upon recent results in this area, introducing new techniques for tackling the problem, while also combining and extending recently introduced tools.\r\n\r\nIn particular we give the first approximation algorithms for Bayesian auctions with multiple heterogeneous items when bidders have additive valuations, budget constraints and general matroid feasibility constraints."}],"publication":"19th Annual European Symposium on Algorithms","scopus_import":"1","date_published":"2011-09-01T00:00:00Z","publisher":"Springer Nature","day":"01"},{"article_processing_charge":"No","title":"An expressive mechanism for auctions on the web","date_updated":"2023-02-17T10:21:18Z","_id":"11864","type":"conference","conference":{"end_date":"2011-04-01","start_date":"2011-03-28","location":"Hyderabad, India","name":"WWW: International Conference on World Wide Web"},"year":"2011","month":"04","page":"127 - 136","publication_identifier":{"isbn":["978-145030632-4"]},"oa_version":"None","quality_controlled":"1","author":[{"last_name":"Dütting","full_name":"Dütting, Paul","first_name":"Paul"},{"last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H","first_name":"Monika H"},{"last_name":"Weber","full_name":"Weber, Ingmar","first_name":"Ingmar"}],"status":"public","extern":"1","citation":{"ama":"Dütting P, Henzinger MH, Weber I. An expressive mechanism for auctions on the web. In: <i>Proceedings of the 20th International Conference on World Wide Web</i>. Association for Computing Machinery; 2011:127-136. doi:<a href=\"https://doi.org/10.1145/1963405.1963427\">10.1145/1963405.1963427</a>","apa":"Dütting, P., Henzinger, M. H., &#38; Weber, I. (2011). An expressive mechanism for auctions on the web. In <i>Proceedings of the 20th international conference on World wide web</i> (pp. 127–136). Hyderabad, India: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/1963405.1963427\">https://doi.org/10.1145/1963405.1963427</a>","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “An Expressive Mechanism for Auctions on the Web.” In <i>Proceedings of the 20th International Conference on World Wide Web</i>, 127–36. Association for Computing Machinery, 2011. <a href=\"https://doi.org/10.1145/1963405.1963427\">https://doi.org/10.1145/1963405.1963427</a>.","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “An expressive mechanism for auctions on the web,” in <i>Proceedings of the 20th international conference on World wide web</i>, Hyderabad, India, 2011, pp. 127–136.","ista":"Dütting P, Henzinger MH, Weber I. 2011. An expressive mechanism for auctions on the web. Proceedings of the 20th international conference on World wide web. WWW: International Conference on World Wide Web, 127–136.","mla":"Dütting, Paul, et al. “An Expressive Mechanism for Auctions on the Web.” <i>Proceedings of the 20th International Conference on World Wide Web</i>, Association for Computing Machinery, 2011, pp. 127–36, doi:<a href=\"https://doi.org/10.1145/1963405.1963427\">10.1145/1963405.1963427</a>.","short":"P. Dütting, M.H. Henzinger, I. Weber, in:, Proceedings of the 20th International Conference on World Wide Web, Association for Computing Machinery, 2011, pp. 127–136."},"doi":"10.1145/1963405.1963427","date_created":"2022-08-16T09:05:34Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"lang":"eng","text":"Auctions are widely used on the Web. Applications range from internet advertising to platforms such as eBay. In most of these applications the auctions in use are single/multi-item auctions with unit demand. The main drawback of standard mechanisms for this type of auctions, such as VCG and GSP, is the limited expressiveness that they offer to the bidders. The General Auction Mechanism (GAM) of [1] is taking a first step towards addressing the problem of limited expressiveness by computing a bidder optimal, envy free outcome for linear utility functions with identical slopes and a single discontinuity per bidder-item pair. We show that in many practical situations this does not suffice to adequately model the preferences of the bidders, and we overcome this problem by presenting the first mechanism for piece-wise linear utility functions with non-identical slopes and multiple discontinuities. Our mechanism runs in polynomial time. Like GAM it is incentive compatible for inputs that fulfill a certain non-degeneracy requirement, but our requirement is more general than the requirement of GAM. For discontinuous utility functions that are non-degenerate as well as for continuous utility functions the outcome of our mechanism is a competitive equilibrium. We also show how our mechanism can be used to compute approximately bidder optimal, envy free outcomes for a general class of continuous utility functions via piece-wise linear approximation. Finally, we prove hardness results for even more expressive settings."}],"language":[{"iso":"eng"}],"publisher":"Association for Computing Machinery","day":"01","date_published":"2011-04-01T00:00:00Z","scopus_import":"1","publication":"Proceedings of the 20th international conference on World wide web"},{"date_updated":"2021-01-12T06:55:08Z","_id":"2072","title":"Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite","oa":1,"year":"2011","has_accepted_license":"1","doi":"10.1093/gbe/evr010","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:55:33Z","volume":3,"oa_version":"Published Version","author":[{"orcid":"0000-0002-4579-8306","full_name":"Vicoso, Beatriz","first_name":"Beatriz","last_name":"Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Bachtrog","first_name":"Doris","full_name":"Bachtrog, Doris"}],"tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"status":"public","extern":"1","day":"11","date_published":"2011-02-11T00:00:00Z","ddc":["570"],"type":"journal_article","page":"230 - 235","issue":"1","intvolume":"         3","month":"02","publication_status":"published","quality_controlled":"1","citation":{"ieee":"B. Vicoso and D. Bachtrog, “Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite,” <i>Genome Biology and Evolution</i>, vol. 3, no. 1. Oxford University Press, pp. 230–235, 2011.","ista":"Vicoso B, Bachtrog D. 2011. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3(1), 230–235.","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and Evolution</i>, vol. 3, no. 1, Oxford University Press, 2011, pp. 230–35, doi:<a href=\"https://doi.org/10.1093/gbe/evr010\">10.1093/gbe/evr010</a>.","short":"B. Vicoso, D. Bachtrog, Genome Biology and Evolution 3 (2011) 230–235.","ama":"Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. <i>Genome Biology and Evolution</i>. 2011;3(1):230-235. doi:<a href=\"https://doi.org/10.1093/gbe/evr010\">10.1093/gbe/evr010</a>","apa":"Vicoso, B., &#38; Bachtrog, D. (2011). Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. <i>Genome Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/gbe/evr010\">https://doi.org/10.1093/gbe/evr010</a>","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and Evolution</i>. Oxford University Press, 2011. <a href=\"https://doi.org/10.1093/gbe/evr010\">https://doi.org/10.1093/gbe/evr010</a>."},"publisher":"Oxford University Press","file_date_updated":"2020-07-14T12:45:27Z","file":[{"file_id":"6395","creator":"dernst","access_level":"open_access","content_type":"application/pdf","checksum":"7855c134436e4f6a13d63b6606d7e8dd","file_name":"2011_GBE_Vicoso.pdf","date_updated":"2020-07-14T12:45:27Z","date_created":"2019-05-10T07:41:28Z","file_size":212547,"relation":"main_file"}],"publication":"Genome Biology and Evolution","abstract":[{"lang":"eng","text":"Many species have morphologically and genetically differentiated sex chromosomes, such as the XY pair of mammals. Y chromosomes are often highly degenerated and carry few functional genes, so that XY males have only one copy of most Xlinked genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage compensation, such as the mammalian X-inactivation, often evolve to reestablish expression balance. A similar phenomenon is expected in femaleheterogametic species, where ZW females should suffer from imbalances due to W-chromosome degeneration. However, no global dosage compensation mechanisms have been detected in the two independent ZW systems that have been studied systematically (birds and silkworm), leading to the suggestion that lack of global dosage compensation may be a general feature of female-heterogametic species. However, analyses of other independently evolved ZW systems are required to test if this is the case. In this study, we use published genomic and expression data to test for the presence of global dosage compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis in humans. We find that Z-linked expression is reduced relative to autosomal expression in females but not males, consistent with incomplete or localized dosage compensation. This gives further support to the theory that female-heterogametic species may not require global mechanisms of dosage compensation."}],"language":[{"iso":"eng"}],"publist_id":"4966"},{"title":"From sparse mocap to highly detailed facial animation","date_updated":"2021-01-12T06:55:17Z","type":"book_chapter","_id":"2098","month":"01","year":"2011","page":"413 - 426","status":"public","author":[{"orcid":"0000-0001-6511-9385","full_name":"Bernd Bickel","first_name":"Bernd","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Lang","full_name":"Lang, Manuel","first_name":"Manuel"}],"quality_controlled":0,"citation":{"ama":"Bickel B, Lang M. From sparse mocap to highly detailed facial animation. In: <i>GPU Computing Gems Emerald Edition</i>. Science Direct; 2011:413-426. doi:<a href=\"https://doi.org/10.1016/B978-0-12-384988-5.00027-9\">10.1016/B978-0-12-384988-5.00027-9</a>","chicago":"Bickel, Bernd, and Manuel Lang. “From Sparse Mocap to Highly Detailed Facial Animation.” In <i>GPU Computing Gems Emerald Edition</i>, 413–26. Science Direct, 2011. <a href=\"https://doi.org/10.1016/B978-0-12-384988-5.00027-9\">https://doi.org/10.1016/B978-0-12-384988-5.00027-9</a>.","apa":"Bickel, B., &#38; Lang, M. (2011). From sparse mocap to highly detailed facial animation. In <i>GPU Computing Gems Emerald Edition</i> (pp. 413–426). Science Direct. <a href=\"https://doi.org/10.1016/B978-0-12-384988-5.00027-9\">https://doi.org/10.1016/B978-0-12-384988-5.00027-9</a>","ieee":"B. Bickel and M. Lang, “From sparse mocap to highly detailed facial animation,” in <i>GPU Computing Gems Emerald Edition</i>, Science Direct, 2011, pp. 413–426.","ista":"Bickel B, Lang M. 2011.From sparse mocap to highly detailed facial animation. In: GPU Computing Gems Emerald Edition. , 413–426.","short":"B. Bickel, M. Lang, in:, GPU Computing Gems Emerald Edition, Science Direct, 2011, pp. 413–426.","mla":"Bickel, Bernd, and Manuel Lang. “From Sparse Mocap to Highly Detailed Facial Animation.” <i>GPU Computing Gems Emerald Edition</i>, Science Direct, 2011, pp. 413–26, doi:<a href=\"https://doi.org/10.1016/B978-0-12-384988-5.00027-9\">10.1016/B978-0-12-384988-5.00027-9</a>."},"extern":1,"publication_status":"published","date_created":"2018-12-11T11:55:42Z","doi":"10.1016/B978-0-12-384988-5.00027-9","publist_id":"4935","abstract":[{"lang":"eng","text":"This chapter presents a method for real-time animation of highly detailed facial expressions based on sparse motion captures data and a limited set of static example poses. The method for real-time animation of highly detailed facial expressions decomposes geometry into large-scale motion and fine-scale details, such as expression wrinkles. Both large- and fine-scale deformation algorithms run entirely on the GPU, and our implementation based on CUDA achieves an overall performance of about 30 fps. The face conveys the most relevant visual characteristics of human identity and expression. Hence, realistic facial animations or interactions with virtual avatars are important for storytelling and gameplay. However, current approaches are either computationally expensive, require very specialized capture hardware, or are extremely labor intensive. At runtime, given an arbitrary facial expression, the algorithm computes the skin strain from the relative distance between marker points and derives fine-scale corrections for the largescale deformation. During gameplay only the sparse set of marker-point positions is transmitted to the GPU. The face animation is entirely computed on the GPU where the resulting mesh can directly be used as input for the rendering stages. This data can be easily obtained by traditional capture hardware. The proposed in-game algorithm is fast. It also is easy to implement and maps well onto programmable GPUs."}],"date_published":"2011-01-01T00:00:00Z","publication":"GPU Computing Gems Emerald Edition","publisher":"Science Direct","day":"01"},{"_id":"2099","type":"journal_article","date_updated":"2021-01-12T06:55:17Z","title":"High-quality passive facial performance capture using anchor frames","issue":"4","month":"07","intvolume":"        30","year":"2011","volume":30,"publication_status":"published","date_created":"2018-12-11T11:55:42Z","doi":"10.1145/2010324.1964970","citation":{"apa":"Beeler, T., Hahn, F., Bradley, D., Bickel, B., Beardsley, P., Gotsman, C., … Groß, M. (2011). High-quality passive facial performance capture using anchor frames. <i>ACM Transactions on Graphics</i>. ACM. <a href=\"https://doi.org/10.1145/2010324.1964970\">https://doi.org/10.1145/2010324.1964970</a>","chicago":"Beeler, Thabo, Fabian Hahn, Derek Bradley, Bernd Bickel, Paul Beardsley, Craig Gotsman, Robert Sumner, and Markus Groß. “High-Quality Passive Facial Performance Capture Using Anchor Frames.” <i>ACM Transactions on Graphics</i>. ACM, 2011. <a href=\"https://doi.org/10.1145/2010324.1964970\">https://doi.org/10.1145/2010324.1964970</a>.","ama":"Beeler T, Hahn F, Bradley D, et al. High-quality passive facial performance capture using anchor frames. <i>ACM Transactions on Graphics</i>. 2011;30(4). doi:<a href=\"https://doi.org/10.1145/2010324.1964970\">10.1145/2010324.1964970</a>","short":"T. Beeler, F. Hahn, D. Bradley, B. Bickel, P. Beardsley, C. Gotsman, R. Sumner, M. Groß, ACM Transactions on Graphics 30 (2011).","mla":"Beeler, Thabo, et al. “High-Quality Passive Facial Performance Capture Using Anchor Frames.” <i>ACM Transactions on Graphics</i>, vol. 30, no. 4, ACM, 2011, doi:<a href=\"https://doi.org/10.1145/2010324.1964970\">10.1145/2010324.1964970</a>.","ista":"Beeler T, Hahn F, Bradley D, Bickel B, Beardsley P, Gotsman C, Sumner R, Groß M. 2011. High-quality passive facial performance capture using anchor frames. ACM Transactions on Graphics. 30(4).","ieee":"T. Beeler <i>et al.</i>, “High-quality passive facial performance capture using anchor frames,” <i>ACM Transactions on Graphics</i>, vol. 30, no. 4. ACM, 2011."},"extern":1,"author":[{"last_name":"Beeler","first_name":"Thabo","full_name":"Beeler, Thabo"},{"full_name":"Hahn, Fabian","first_name":"Fabian","last_name":"Hahn"},{"first_name":"Derek","full_name":"Bradley, Derek J","last_name":"Bradley"},{"id":"49876194-F248-11E8-B48F-1D18A9856A87","last_name":"Bickel","first_name":"Bernd","full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385"},{"full_name":"Beardsley, Paul A","first_name":"Paul","last_name":"Beardsley"},{"full_name":"Gotsman, Craig","first_name":"Craig","last_name":"Gotsman"},{"first_name":"Robert","full_name":"Sumner, Robert W","last_name":"Sumner"},{"first_name":"Markus","full_name":"Groß, Markus S","last_name":"Groß"}],"quality_controlled":0,"status":"public","publication":"ACM Transactions on Graphics","date_published":"2011-07-01T00:00:00Z","publisher":"ACM","day":"01","publist_id":"4936","abstract":[{"text":"We present a new technique for passive and markerless facial performance capture based on anchor frames. Our method starts with high resolution per-frame geometry acquisition using state-of-theart stereo reconstruction, and proceeds to establish a single triangle mesh that is propagated through the entire performance. Leveraging the fact that facial performances often contain repetitive subsequences, we identify anchor frames as those which contain similar facial expressions to a manually chosen reference expression. Anchor frames are automatically computed over one or even multiple performances. We introduce a robust image-space tracking method that computes pixel matches directly from the reference frame to all anchor frames, and thereby to the remaining frames in the sequence via sequential matching. This allows us to propagate one reconstructed frame to an entire sequence in parallel, in contrast to previous sequential methods. Our anchored reconstruction approach also limits tracker drift and robustly handles occlusions and motion blur. The parallel tracking and mesh propagation offer low computation times. Our technique will even automatically match anchor frames across different sequences captured on different occasions, propagating a single mesh to all performances.","lang":"eng"}]}]