[{"language":[{"iso":"eng"}],"tmp":{"short":"CC BY-NC-SA (4.0)","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","image":"/images/cc_by_nc_sa.png"},"month":"09","day":"13","page":"127-177","publication":"Image Processing On Line","status":"public","date_created":"2019-07-31T09:44:24Z","intvolume":"         1","quality_controlled":"1","file_date_updated":"2020-07-14T12:47:39Z","has_accepted_license":"1","file":[{"creator":"dernst","content_type":"application/pdf","file_size":2793903,"date_created":"2019-08-01T06:34:21Z","access_level":"open_access","file_name":"2011_IPOL_Mondelli.pdf","file_id":"6751","checksum":"910710811224c633202791e0c217d05d","date_updated":"2020-07-14T12:47:39Z","relation":"main_file"}],"oa":1,"oa_version":"Published Version","citation":{"ama":"Mondelli M, Ciomaga A. Finite difference schemes for MCM and AMSS. <i>Image Processing On Line</i>. 2011;1:127-177. doi:<a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">10.5201/ipol.2011.cm_fds</a>","apa":"Mondelli, M., &#38; Ciomaga, A. (2011). Finite difference schemes for MCM and AMSS. <i>Image Processing On Line</i>. IPOL Image Processing On Line. <a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">https://doi.org/10.5201/ipol.2011.cm_fds</a>","mla":"Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM and AMSS.” <i>Image Processing On Line</i>, vol. 1, IPOL Image Processing On Line, 2011, pp. 127–77, doi:<a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">10.5201/ipol.2011.cm_fds</a>.","ieee":"M. Mondelli and A. Ciomaga, “Finite difference schemes for MCM and AMSS,” <i>Image Processing On Line</i>, vol. 1. IPOL Image Processing On Line, pp. 127–177, 2011.","short":"M. Mondelli, A. Ciomaga, Image Processing On Line 1 (2011) 127–177.","ista":"Mondelli M, Ciomaga A. 2011. Finite difference schemes for MCM and AMSS. Image Processing On Line. 1, 127–177.","chicago":"Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM and AMSS.” <i>Image Processing On Line</i>. IPOL Image Processing On Line, 2011. <a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">https://doi.org/10.5201/ipol.2011.cm_fds</a>."},"volume":1,"year":"2011","publication_identifier":{"issn":["2105-1232"]},"type":"journal_article","abstract":[{"text":"This article refers to algorithms based on finite difference schemes for computing mean and affine curvature evolutions of digital images, introduced by Alvarez and Morel [L. Alvarez, J.M. Morel, “Formalization and computational aspects of image analysis”, Acta Numerica, pp. 159, 1994]. We discuss consistency, stability and convergence. Our analysis focuses on some possible choices of the parameters, choices that generate multiple variants in the implementations. Meaningful visual examples on how the algorithms actually work are provided.","lang":"eng"}],"title":"Finite difference schemes for MCM and AMSS","date_updated":"2021-01-12T08:08:50Z","ddc":["000"],"date_published":"2011-09-13T00:00:00Z","extern":"1","_id":"6749","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.5201/ipol.2011.cm_fds","publisher":"IPOL Image Processing On Line","publication_status":"published","author":[{"last_name":"Mondelli","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco"},{"full_name":"Ciomaga, Adina","first_name":"Adina","last_name":"Ciomaga"}]},{"doi":"10.13140/2.1.1862.4646","publisher":"Editura Universitãtii „Alexandru Ioan Cuza” Iasi","author":[{"id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco","last_name":"Mondelli","first_name":"Marco"},{"full_name":"Ciomaga, Adina","first_name":"Adina","last_name":"Ciomaga"}],"publication_status":"published","extern":"1","quality_controlled":"1","_id":"6767","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"In the present paper we give a thorough analysis of two finite difference schemes for the Mean Curvature Motion and its affine variant, the Affine Morphological Scale Space, schemes introduced in the Image Processing framework. This analysis brings in a series of parameters that allow us to compute an accurate discrete evolution of curvature motions.\r\nThe choice of these parameters is based on intrinsic geometric properties of the evolution equations for linear, radial and elliptical functions. In the last part we present several examples, underlining the main advantages of the algorithms (the removal of pixelization effects and JPEG artifacts) as well as their major drawbacks (absence of contrast invariance and grid dependence). A detailed explanatory report, the ANSI C implementations and an on-line demo can be found at http://www.ipol.im/.","lang":"eng"}],"day":"01","page":"137-156","title":"On finite difference schemes for curvature motions","publication":"Proceedings of the International Student Conference on Pure and Applied Mathematics","conference":{"start_date":"2010-07-12","location":"Iasi, Romania","name":"ISCOPAM: International Student Conference on Pure and Applied Mathematics","end_date":"2010-07-16"},"date_updated":"2021-01-12T08:08:56Z","status":"public","date_created":"2019-08-05T12:20:58Z","date_published":"2011-01-01T00:00:00Z","language":[{"iso":"eng"}],"oa_version":"None","citation":{"short":"M. Mondelli, A. Ciomaga, in:, Proceedings of the International Student Conference on Pure and Applied Mathematics, Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011, pp. 137–156.","ieee":"M. Mondelli and A. Ciomaga, “On finite difference schemes for curvature motions,” in <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>, Iasi, Romania, 2011, pp. 137–156.","mla":"Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature Motions.” <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>, Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011, pp. 137–56, doi:<a href=\"https://doi.org/10.13140/2.1.1862.4646\">10.13140/2.1.1862.4646</a>.","ama":"Mondelli M, Ciomaga A. On finite difference schemes for curvature motions. In: <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>. Editura Universitãtii „Alexandru Ioan Cuza” Iasi; 2011:137-156. doi:<a href=\"https://doi.org/10.13140/2.1.1862.4646\">10.13140/2.1.1862.4646</a>","apa":"Mondelli, M., &#38; Ciomaga, A. (2011). On finite difference schemes for curvature motions. In <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i> (pp. 137–156). Iasi, Romania: Editura Universitãtii „Alexandru Ioan Cuza” Iasi. <a href=\"https://doi.org/10.13140/2.1.1862.4646\">https://doi.org/10.13140/2.1.1862.4646</a>","chicago":"Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature Motions.” In <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>, 137–56. Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011. <a href=\"https://doi.org/10.13140/2.1.1862.4646\">https://doi.org/10.13140/2.1.1862.4646</a>.","ista":"Mondelli M, Ciomaga A. 2011. On finite difference schemes for curvature motions. Proceedings of the International Student Conference on Pure and Applied Mathematics. ISCOPAM: International Student Conference on Pure and Applied Mathematics, 137–156."},"year":"2011","publication_identifier":{"isbn":["978-973-703-602-5"]},"month":"01","type":"conference"},{"oa":1,"external_id":{"arxiv":["1106.2995"]},"quality_controlled":"1","article_processing_charge":"No","acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR-0846426. We thank Josep C. Pàmies and William L. Miller for helpful discussions.","intvolume":"         7","date_created":"2021-11-29T14:33:18Z","status":"public","publication":"Soft Matter","day":"08","month":"08","article_type":"original","language":[{"iso":"eng"}],"author":[{"full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","first_name":"Anđela","last_name":"Šarić"},{"first_name":"Angelo","last_name":"Cacciuto","full_name":"Cacciuto, Angelo"}],"publication_status":"published","publisher":"Royal Society of Chemistry","arxiv":1,"doi":"10.1039/c1sm05773a","_id":"10389","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","extern":"1","issue":"18","main_file_link":[{"url":"https://arxiv.org/abs/1106.2995","open_access":"1"}],"date_published":"2011-08-08T00:00:00Z","date_updated":"2021-11-29T15:12:10Z","article_number":"8324","title":"Soft elastic surfaces as a platform for particle self-assembly","abstract":[{"text":"We perform numerical simulations to study self-assembly of nanoparticles mediated by an elastic planar surface. We show how the nontrivial elastic response to deformations of these surfaces leads to anisotropic interactions between the particles resulting in aggregates having different geometrical features. The morphology of the patterns can be controlled by the mechanical properties of the surface and the strength of the particle adhesion. We use simple scaling arguments to understand the formation of the different structures, and we show how the adhering particles can cause the underlying elastic substrate to wrinkle if two of its opposite edges are clamped. Finally, we discuss the implications of our results and suggest how elastic surfaces could be used in nanofabrication.","lang":"eng"}],"publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"type":"journal_article","volume":7,"year":"2011","scopus_import":"1","citation":{"ista":"Šarić A, Cacciuto A. 2011. Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. 7(18), 8324.","chicago":"Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” <i>Soft Matter</i>. Royal Society of Chemistry, 2011. <a href=\"https://doi.org/10.1039/c1sm05773a\">https://doi.org/10.1039/c1sm05773a</a>.","ama":"Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly. <i>Soft Matter</i>. 2011;7(18). doi:<a href=\"https://doi.org/10.1039/c1sm05773a\">10.1039/c1sm05773a</a>","apa":"Šarić, A., &#38; Cacciuto, A. (2011). Soft elastic surfaces as a platform for particle self-assembly. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c1sm05773a\">https://doi.org/10.1039/c1sm05773a</a>","ieee":"A. Šarić and A. Cacciuto, “Soft elastic surfaces as a platform for particle self-assembly,” <i>Soft Matter</i>, vol. 7, no. 18. Royal Society of Chemistry, 2011.","mla":"Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” <i>Soft Matter</i>, vol. 7, no. 18, 8324, Royal Society of Chemistry, 2011, doi:<a href=\"https://doi.org/10.1039/c1sm05773a\">10.1039/c1sm05773a</a>.","short":"A. Šarić, A. Cacciuto, Soft Matter 7 (2011)."},"keyword":["condensed matter physics","general chemistry"],"oa_version":"Preprint"},{"doi":"10.1088/1742-6596/264/1/012015","arxiv":1,"publisher":"IOP Publishing Ltd.","publication_status":"published","author":[{"last_name":"Nägerl","first_name":"Hanns","full_name":"Nägerl, Hanns"},{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"full_name":"Gustavsson, Mattias","first_name":"Mattias","last_name":"Gustavsson"},{"first_name":"Russell","last_name":"Hart","full_name":"Hart, Russell"},{"orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","last_name":"Danzl"}],"extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1048","abstract":[{"text":"We produce an ultracold and dense sample of rovibronic ground state Cs 2 molecules close to the regime of quantum degeneracy, in a single hyperfine level, in the presence of an optical lattice. The molecules are individually trapped, in the motional ground state of an optical lattice well, with a lifetime of 8 s. For preparation, we start with a zero-temperature atomic Mott-insulator state with optimized double-site occupancy and efficiently associate weakly-bound dimer molecules on a Feshbach resonance. Despite extremely weak Franck-Condon wavefunction overlap, the molecules are subsequently transferred with &gt;50% efficiency to the rovibronic ground state by a stimulated four-photon process. Our results present a crucial step towards the generation of Bose-Einstein condensates of ground-state molecules and, when suitably generalized to polar heteronuclear molecules such as RbCs, the realization of dipolar many-body quantum-gas phases in periodic potentials.","lang":"eng"}],"title":"Ultracold and dense samples of ground-state molecules in lattice potentials","date_updated":"2021-01-12T06:47:54Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1011.0179"}],"date_published":"2011-01-01T00:00:00Z","issue":"1","oa_version":"Preprint","citation":{"ista":"Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. 2011. Ultracold and dense samples of ground-state molecules in lattice potentials. Journal of Physics: Conference Series. 264(1).","chicago":"Nägerl, Hanns, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell Hart, and Johann G Danzl. “Ultracold and Dense Samples of Ground-State Molecules in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>. IOP Publishing Ltd., 2011. <a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">https://doi.org/10.1088/1742-6596/264/1/012015</a>.","apa":"Nägerl, H., Mark, M., Haller, E., Gustavsson, M., Hart, R., &#38; Danzl, J. G. (2011). Ultracold and dense samples of ground-state molecules in lattice potentials. <i>Journal of Physics: Conference Series</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">https://doi.org/10.1088/1742-6596/264/1/012015</a>","ama":"Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. Ultracold and dense samples of ground-state molecules in lattice potentials. <i>Journal of Physics: Conference Series</i>. 2011;264(1). doi:<a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">10.1088/1742-6596/264/1/012015</a>","short":"H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, J.G. Danzl, Journal of Physics: Conference Series 264 (2011).","mla":"Nägerl, Hanns, et al. “Ultracold and Dense Samples of Ground-State Molecules in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>, vol. 264, no. 1, IOP Publishing Ltd., 2011, doi:<a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">10.1088/1742-6596/264/1/012015</a>.","ieee":"H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, and J. G. Danzl, “Ultracold and dense samples of ground-state molecules in lattice potentials,” <i>Journal of Physics: Conference Series</i>, vol. 264, no. 1. IOP Publishing Ltd., 2011."},"year":"2011","volume":264,"type":"journal_article","publist_id":"6340","external_id":{"arxiv":["1011.0179"]},"oa":1,"intvolume":"       264","acknowledgement":"We thank H. Ritsch, N. Bouloufa, O. Dulieu, J. Aldegunde, J. M. Hutson, H. Salami, T. Bergeman,  S. D ̈urr, and K. Bergmann for valuable discussions and H. Telle, H. Schnatz, B. Lipphardt, and J. Alnis for sharing technical expertise. We are indebted to R. Grimm for generous support. We gratefully acknowledge funding by the Austrian Ministry of Science and\r\nResearch (Bundesministerium f ̈ur Wissenschaft und Forschung) and the Austrian Science Fund\r\n(Fonds zur F ̈orderung der wissenschaftlichen Forschung) in the form of a START prize grant\r\nand by the European Science Foundation within the framework of the EuroQUASAR collective\r\nresearch project QuDeGPM (Project I 153-N16) and within the framework of the EuroQUAM\r\ncollective research project QuDipMol (Project I 124-N16).  R.H. was supported by a Marie Curie\r\nInternational Incoming Fellowship within the 7th European Community Framework Programme","article_processing_charge":"No","day":"01","publication":"Journal of Physics: Conference Series","status":"public","date_created":"2018-12-11T11:49:52Z","language":[{"iso":"eng"}],"month":"01"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1050","extern":"1","arxiv":1,"publisher":"American Physical Society","doi":"10.1103/PhysRevA.83.032514","author":[{"last_name":"Bai","first_name":"Jianmei","full_name":"Bai, Jianmei"},{"last_name":"Ahmed","first_name":"Ergin","full_name":"Ahmed, Ergin"},{"last_name":"Beser","first_name":"Bediha","full_name":"Beser, Bediha"},{"first_name":"Yafei","last_name":"Guan","full_name":"Guan, Yafei"},{"full_name":"Kotochigova, Svetlana","first_name":"Svetlana","last_name":"Kotochigova"},{"last_name":"Lyyra","first_name":"Marjatta","full_name":"Lyyra, Marjatta"},{"full_name":"Ashman, Seth","first_name":"Seth","last_name":"Ashman"},{"full_name":"Wolfe, Christopher","last_name":"Wolfe","first_name":"Christopher"},{"full_name":"Huennekens, John","last_name":"Huennekens","first_name":"John"},{"last_name":"Xie","first_name":"Feng","full_name":"Xie, Feng"},{"full_name":"Li, Dan","first_name":"Dan","last_name":"Li"},{"full_name":"Li, Li","last_name":"Li","first_name":"Li"},{"first_name":"Maris","last_name":"Tamanis","full_name":"Tamanis, Maris"},{"full_name":"Ferber, Ruvin","first_name":"Ruvin","last_name":"Ferber"},{"last_name":"Drozdova","first_name":"Anastasia","full_name":"Drozdova, Anastasia"},{"full_name":"Pazyuk, Elena","first_name":"Elena","last_name":"Pazyuk"},{"first_name":"Andrey","last_name":"Stolyarov","full_name":"Stolyarov, Andrey"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","last_name":"Danzl","first_name":"Johann G"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"},{"full_name":"Bouloufa, Nadia","first_name":"Nadia","last_name":"Bouloufa"},{"first_name":"Olivier","last_name":"Dulieu","full_name":"Dulieu, Olivier"},{"first_name":"Claude","last_name":"Amiot","full_name":"Amiot, Claude"},{"first_name":"Houssam","last_name":"Salami","full_name":"Salami, Houssam"},{"full_name":"Bergeman, Thomas","first_name":"Thomas","last_name":"Bergeman"}],"publication_status":"published","oa_version":"Preprint","citation":{"mla":"Bai, Jianmei, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+ and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 83, no. 3, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">10.1103/PhysRevA.83.032514</a>.","ieee":"J. Bai <i>et al.</i>, “Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2,” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 83, no. 3. American Physical Society, 2011.","short":"J. Bai, E. Ahmed, B. Beser, Y. Guan, S. Kotochigova, M. Lyyra, S. Ashman, C. Wolfe, J. Huennekens, F. Xie, D. Li, L. Li, M. Tamanis, R. Ferber, A. Drozdova, E. Pazyuk, A. Stolyarov, J.G. Danzl, H. Nägerl, N. Bouloufa, O. Dulieu, C. Amiot, H. Salami, T. Bergeman,  Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011).","ama":"Bai J, Ahmed E, Beser B, et al. Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2011;83(3). doi:<a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">10.1103/PhysRevA.83.032514</a>","apa":"Bai, J., Ahmed, E., Beser, B., Guan, Y., Kotochigova, S., Lyyra, M., … Bergeman, T. (2011). Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">https://doi.org/10.1103/PhysRevA.83.032514</a>","chicago":"Bai, Jianmei, Ergin Ahmed, Bediha Beser, Yafei Guan, Svetlana Kotochigova, Marjatta Lyyra, Seth Ashman, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+ and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">https://doi.org/10.1103/PhysRevA.83.032514</a>.","ista":"Bai J, Ahmed E, Beser B, Guan Y, Kotochigova S, Lyyra M, Ashman S, Wolfe C, Huennekens J, Xie F, Li D, Li L, Tamanis M, Ferber R, Drozdova A, Pazyuk E, Stolyarov A, Danzl JG, Nägerl H, Bouloufa N, Dulieu O, Amiot C, Salami H, Bergeman T. 2011. Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2.  Physical Review A - Atomic, Molecular, and Optical Physics. 83(3)."},"type":"journal_article","volume":83,"year":"2011","title":"Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2","abstract":[{"lang":"eng","text":"We present experimentally derived potential curves 1?and spin-orbit interaction functions for the strongly perturbed AΣu+ 3?and bΠu states of the cesium dimer. The results are based on data from several sources. Laser-induced fluorescence Fourier transform spectroscopy (LIF FTS) was used some time ago in the Laboratoire Aimé Cotton primarily to study the XΣg+ state. More recent work at Tsinghua University provides information from moderate 3?resolution spectroscopy on the lowest levels of the bΠ0u± state as well as additional high-resolution data. From Innsbruck University, we have precision data obtained with cold Cs2 molecules. Recent data from Temple University was obtained using the optical-optical double resonance polarization spectroscopy technique, and finally, a group at the University of Latvia has added additional LIF FTS data. In the Hamiltonian matrix, we have used analytic potentials (the expanded Morse oscillator form) with both finite-difference (FD) coupled-channel and discrete variable representation (DVR) calculations of the term values. Fitted diagonal and off-diagonal spin-orbit functions are obtained and compared with ab initio results from Temple and Moscow State universities."}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1101.5412"}],"date_published":"2011-03-28T00:00:00Z","issue":"3","date_updated":"2021-01-12T06:47:55Z","acknowledgement":"The work in Temple University was supported by NSF grant no. PHY-0855502. S.K. acknowledges support from AFOSR and from NSF grant no. PHY-1005453. S.A., C.M., and J.H. were supported by NSF grants no. PHY-0652938 and PHY-0968898. The work at Stony Brook was supported by NSF grants no. PHY-0652459 and PHY-0968905. The work in Tsinghua University was supported by NSFC of China, under grant no. 20773072. The Moscow team thanks the Russian Foundation for Basic Researches by the grant no. 10-03-00195 and MSU Priority Direction 2.3. M.T. and R.F. are grateful to Ilze Klincare, Olga Nikolayeva, and Artis Kruzins for their help in spectra analysis, as well as appreciate the support from the ESF 2009/0223/1DP/1.1.1.2.0/09/APIA/VIAA/008 project.","article_processing_charge":"No","intvolume":"        83","external_id":{"arxiv":["1101.5412"]},"publist_id":"6339","oa":1,"language":[{"iso":"eng"}],"month":"03","publication":" Physical Review A - Atomic, Molecular, and Optical Physics","day":"28","date_created":"2018-12-11T11:49:53Z","status":"public"},{"publist_id":"6338","doi":"10.1088/1367-2630/13/8/085008","publisher":"IOP Publishing Ltd.","author":[{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"first_name":"Johann G","last_name":"Danzl","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lauber, Katharina","first_name":"Katharina","last_name":"Lauber"},{"full_name":"Gustavsson, Mattias","last_name":"Gustavsson","first_name":"Mattias"},{"last_name":"Nägerl","first_name":"Hanns","full_name":"Nägerl, Hanns"}],"publication_status":"published","extern":"1","intvolume":"        13","_id":"1051","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We are indebted to R Grimm for generous support and we thank A Daley for valuable discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within project I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM.","abstract":[{"text":"We demonstrate the temporal Talbot effect for trapped matter waves using ultracold atoms in an optical lattice. We investigate the phase evolution of an array of essentially non-interacting matter waves and observe matter-wave collapse and revival in the form of a Talbot interference pattern. By using long expansion times, we image momentum space with sub-recoil resolution, allowing us to observe fractional Talbot fringes up to tenth order.","lang":"eng"}],"day":"01","publication":"New Journal of Physics","title":"Demonstration of the temporal matter-wave Talbot effect for trapped matter waves","date_updated":"2021-01-12T06:47:56Z","status":"public","date_created":"2018-12-11T11:49:53Z","date_published":"2011-08-01T00:00:00Z","language":[{"iso":"eng"}],"oa_version":"None","citation":{"ieee":"M. Mark, E. Haller, J. G. Danzl, K. Lauber, M. Gustavsson, and H. Nägerl, “Demonstration of the temporal matter-wave Talbot effect for trapped matter waves,” <i>New Journal of Physics</i>, vol. 13. IOP Publishing Ltd., 2011.","mla":"Mark, Manfred, et al. “Demonstration of the Temporal Matter-Wave Talbot Effect for Trapped Matter Waves.” <i>New Journal of Physics</i>, vol. 13, IOP Publishing Ltd., 2011, doi:<a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">10.1088/1367-2630/13/8/085008</a>.","short":"M. Mark, E. Haller, J.G. Danzl, K. Lauber, M. Gustavsson, H. Nägerl, New Journal of Physics 13 (2011).","apa":"Mark, M., Haller, E., Danzl, J. G., Lauber, K., Gustavsson, M., &#38; Nägerl, H. (2011). Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">https://doi.org/10.1088/1367-2630/13/8/085008</a>","ama":"Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. <i>New Journal of Physics</i>. 2011;13. doi:<a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">10.1088/1367-2630/13/8/085008</a>","chicago":"Mark, Manfred, Elmar Haller, Johann G Danzl, Katharina Lauber, Mattias Gustavsson, and Hanns Nägerl. “Demonstration of the Temporal Matter-Wave Talbot Effect for Trapped Matter Waves.” <i>New Journal of Physics</i>. IOP Publishing Ltd., 2011. <a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">https://doi.org/10.1088/1367-2630/13/8/085008</a>.","ista":"Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. 2011. Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. New Journal of Physics. 13."},"volume":13,"year":"2011","month":"08","type":"journal_article"},{"author":[{"full_name":"Vexiau, Romain","last_name":"Vexiau","first_name":"Romain"},{"full_name":"Bouloufa, Nadia","last_name":"Bouloufa","first_name":"Nadia"},{"last_name":"Aymar","first_name":"Mireille","full_name":"Aymar, Mireille"},{"last_name":"Danzl","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G"},{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"},{"last_name":"Dulieu","first_name":"Olivier","full_name":"Dulieu, Olivier"}],"publication_status":"published","arxiv":1,"publisher":"Springer","doi":"10.1140/epjd/e2011-20085-4","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1052","extern":"1","main_file_link":[{"url":"https://arxiv.org/abs/1102.1793","open_access":"1"}],"date_published":"2011-11-01T00:00:00Z","issue":"1-2","date_updated":"2021-01-12T06:47:56Z","title":"Optimal trapping wavelengths of Cs 2 molecules in an optical lattice","abstract":[{"lang":"eng","text":"The present paper aims at finding optimal parameters for trapping of Cs 2 molecules in optical lattices, with the perspective of creating a quantum degenerate gas of ground-state molecules. We have calculated dynamic polarizabilities of Cs 2 molecules subject to an oscillating electric field, using accurate potential curves and electronic transition dipole moments. We show that for some particular wavelengths of the optical lattice, called &quot;magic wavelengths&quot;, the polarizability of the ground-state molecules is equal to the one of a Feshbach molecule. As the creation of the sample of ground-state molecules relies on an adiabatic population transfer from weakly-bound molecules created on a Feshbach resonance, such a coincidence ensures that both the initial and final states are favorably trapped by the lattice light, allowing optimized transfer in agreement with the experimental observation."}],"type":"journal_article","year":"2011","volume":65,"oa_version":"Preprint","citation":{"short":"R. Vexiau, N. Bouloufa, M. Aymar, J.G. Danzl, M. Mark, H. Nägerl, O. Dulieu, European Physical Journal D 65 (2011) 243–250.","ieee":"R. Vexiau <i>et al.</i>, “Optimal trapping wavelengths of Cs 2 molecules in an optical lattice,” <i>European Physical Journal D</i>, vol. 65, no. 1–2. Springer, pp. 243–250, 2011.","mla":"Vexiau, Romain, et al. “Optimal Trapping Wavelengths of Cs 2 Molecules in an Optical Lattice.” <i>European Physical Journal D</i>, vol. 65, no. 1–2, Springer, 2011, pp. 243–50, doi:<a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">10.1140/epjd/e2011-20085-4</a>.","apa":"Vexiau, R., Bouloufa, N., Aymar, M., Danzl, J. G., Mark, M., Nägerl, H., &#38; Dulieu, O. (2011). Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. <i>European Physical Journal D</i>. Springer. <a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">https://doi.org/10.1140/epjd/e2011-20085-4</a>","ama":"Vexiau R, Bouloufa N, Aymar M, et al. Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. <i>European Physical Journal D</i>. 2011;65(1-2):243-250. doi:<a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">10.1140/epjd/e2011-20085-4</a>","chicago":"Vexiau, Romain, Nadia Bouloufa, Mireille Aymar, Johann G Danzl, Manfred Mark, Hanns Nägerl, and Olivier Dulieu. “Optimal Trapping Wavelengths of Cs 2 Molecules in an Optical Lattice.” <i>European Physical Journal D</i>. Springer, 2011. <a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">https://doi.org/10.1140/epjd/e2011-20085-4</a>.","ista":"Vexiau R, Bouloufa N, Aymar M, Danzl JG, Mark M, Nägerl H, Dulieu O. 2011. Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. European Physical Journal D. 65(1–2), 243–250."},"oa":1,"external_id":{"arxiv":["1102.1793"]},"publist_id":"6336","acknowledgement":"We thank E. Haller for important contributions to the experimental work and R. Grimm for generous support. We acknowledge  funding  by  the  Austrian  Science  Fund  (FWF)  within\r\nproject Quantum Gases  of Ground-State Molecules,  project\r\nnumber P 21555-N20.","article_processing_charge":"No","intvolume":"        65","date_created":"2018-12-11T11:49:53Z","status":"public","publication":"European Physical Journal D","page":"243 - 250","day":"01","month":"11","language":[{"iso":"eng"}]},{"date_created":"2018-12-11T11:49:54Z","status":"public","publication":"Physical Review Letters","day":"18","month":"10","language":[{"iso":"eng"}],"oa":1,"external_id":{"arxiv":["1107.1803"]},"publist_id":"6337","acknowledgement":"We are indebted to R. Grimm for generous support. We thank D. Boyanovsky, H. Büchler, P. Johnson, W. Niedenzu, and E. Tiesinga for fruitful discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within project I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM.","article_processing_charge":"No","intvolume":"       107","date_published":"2011-10-18T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/1107.1803","open_access":"1"}],"issue":"17","date_updated":"2021-01-12T06:47:56Z","title":"Precision measurements on a tunable Mott insulator of ultracold atoms","abstract":[{"text":"We perform precision measurements on a Mott-insulator quantum state of ultracold atoms with tunable interactions. We probe the dependence of the superfluid-to-Mott-insulator transition on the interaction strength and explore the limits of the standard Bose-Hubbard model description. By tuning the on-site interaction energies to values comparable to the interband separation, we are able to quantitatively measure number-dependent shifts in the excitation spectrum caused by effective multibody interactions.","lang":"eng"}],"type":"journal_article","volume":107,"year":"2011","oa_version":"Preprint","citation":{"ista":"Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. 2011. Precision measurements on a tunable Mott insulator of ultracold atoms. Physical Review Letters. 107(17).","chicago":"Mark, Manfred, Elmar Haller, Katharina Lauber, Johann G Danzl, Andrew Daley, and Hanns Nägerl. “Precision Measurements on a Tunable Mott Insulator of Ultracold Atoms.” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">https://doi.org/10.1103/PhysRevLett.107.175301</a>.","ama":"Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. Precision measurements on a tunable Mott insulator of ultracold atoms. <i>Physical Review Letters</i>. 2011;107(17). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">10.1103/PhysRevLett.107.175301</a>","apa":"Mark, M., Haller, E., Lauber, K., Danzl, J. G., Daley, A., &#38; Nägerl, H. (2011). Precision measurements on a tunable Mott insulator of ultracold atoms. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">https://doi.org/10.1103/PhysRevLett.107.175301</a>","ieee":"M. Mark, E. Haller, K. Lauber, J. G. Danzl, A. Daley, and H. Nägerl, “Precision measurements on a tunable Mott insulator of ultracold atoms,” <i>Physical Review Letters</i>, vol. 107, no. 17. American Physical Society, 2011.","mla":"Mark, Manfred, et al. “Precision Measurements on a Tunable Mott Insulator of Ultracold Atoms.” <i>Physical Review Letters</i>, vol. 107, no. 17, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">10.1103/PhysRevLett.107.175301</a>.","short":"M. Mark, E. Haller, K. Lauber, J.G. Danzl, A. Daley, H. Nägerl, Physical Review Letters 107 (2011)."},"publication_status":"published","author":[{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"first_name":"Elmar","last_name":"Haller","full_name":"Haller, Elmar"},{"first_name":"Katharina","last_name":"Lauber","full_name":"Lauber, Katharina"},{"first_name":"Johann G","last_name":"Danzl","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Andrew","last_name":"Daley","full_name":"Daley, Andrew"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"}],"arxiv":1,"publisher":"American Physical Society","doi":"10.1103/PhysRevLett.107.175301","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1053","extern":"1"},{"oa":1,"publist_id":"6335","external_id":{"arxiv":["1107.4516"]},"intvolume":"       107","acknowledgement":"We thank R. Grimm for generous support. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM. G. P. acknowledges funding from the EU through NAME-QUAM and AQUTE.","article_processing_charge":"No","status":"public","date_created":"2018-12-11T11:49:54Z","day":"02","publication":"Physical Review Letters","month":"12","language":[{"iso":"eng"}],"publication_status":"published","author":[{"last_name":"Haller","first_name":"Elmar","full_name":"Haller, Elmar"},{"full_name":"Rabie, Mahmoud","first_name":"Mahmoud","last_name":"Rabie"},{"last_name":"Mark","first_name":"Manfred","full_name":"Mark, Manfred"},{"last_name":"Danzl","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973"},{"full_name":"Hart, Russell","last_name":"Hart","first_name":"Russell"},{"full_name":"Lauber, Katharina","first_name":"Katharina","last_name":"Lauber"},{"last_name":"Pupillo","first_name":"Guido","full_name":"Pupillo, Guido"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"}],"doi":"10.1103/PhysRevLett.107.230404","arxiv":1,"publisher":"American Physical Society","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1054","date_updated":"2021-01-12T06:47:57Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1107.4516"}],"date_published":"2011-12-02T00:00:00Z","issue":"23","abstract":[{"lang":"eng","text":"We investigate local three-body correlations for bosonic particles in three dimensions and one dimension as a function of the interaction strength. The three-body correlation function g(3) is determined by measuring the three-body recombination rate in an ultracold gas of Cs atoms. In three dimensions, we measure the dependence of g(3) on the gas parameter in a BEC, finding good agreement with the theoretical prediction accounting for beyond-mean-field effects. In one dimension, we observe a reduction of g( 3) by several orders of magnitude upon increasing interactions from the weakly interacting BEC to the strongly interacting Tonks-Girardeau regime, in good agreement with predictions from the Lieb-Liniger model for all strengths of interaction."}],"title":"Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension","volume":107,"year":"2011","type":"journal_article","citation":{"ista":"Haller E, Rabie M, Mark M, Danzl JG, Hart R, Lauber K, Pupillo G, Nägerl H. 2011. Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. Physical Review Letters. 107(23).","chicago":"Haller, Elmar, Mahmoud Rabie, Manfred Mark, Johann G Danzl, Russell Hart, Katharina Lauber, Guido Pupillo, and Hanns Nägerl. “Three-Body Correlation Functions and Recombination Rates for Bosons in Three Dimensions and One Dimension.” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">https://doi.org/10.1103/PhysRevLett.107.230404</a>.","ama":"Haller E, Rabie M, Mark M, et al. Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. <i>Physical Review Letters</i>. 2011;107(23). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">10.1103/PhysRevLett.107.230404</a>","apa":"Haller, E., Rabie, M., Mark, M., Danzl, J. G., Hart, R., Lauber, K., … Nägerl, H. (2011). Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">https://doi.org/10.1103/PhysRevLett.107.230404</a>","short":"E. Haller, M. Rabie, M. Mark, J.G. Danzl, R. Hart, K. Lauber, G. Pupillo, H. Nägerl, Physical Review Letters 107 (2011).","mla":"Haller, Elmar, et al. “Three-Body Correlation Functions and Recombination Rates for Bosons in Three Dimensions and One Dimension.” <i>Physical Review Letters</i>, vol. 107, no. 23, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">10.1103/PhysRevLett.107.230404</a>.","ieee":"E. Haller <i>et al.</i>, “Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension,” <i>Physical Review Letters</i>, vol. 107, no. 23. American Physical Society, 2011."},"oa_version":"Preprint"},{"publisher":"National Academy of Sciences","doi":"10.1073/pnas.1019273108","publication_status":"published","author":[{"last_name":"Hsieh","first_name":"Tzung-Fu","full_name":"Hsieh, Tzung-Fu"},{"last_name":"Shin","first_name":"Juhyun","full_name":"Shin, Juhyun"},{"full_name":"Uzawa, Rie","last_name":"Uzawa","first_name":"Rie"},{"last_name":"Silva","first_name":"Pedro","full_name":"Silva, Pedro"},{"full_name":"Cohen, Stephanie","last_name":"Cohen","first_name":"Stephanie"},{"full_name":"Bauer, Matthew J.","last_name":"Bauer","first_name":"Matthew J."},{"last_name":"Hashimoto","first_name":"Meryl","full_name":"Hashimoto, Meryl"},{"last_name":"Kirkbride","first_name":"Ryan C.","full_name":"Kirkbride, Ryan C."},{"last_name":"Harada","first_name":"John J.","full_name":"Harada, John J."},{"first_name":"Daniel","last_name":"Zilberman","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"},{"full_name":"Fischer, Robert L.","last_name":"Fischer","first_name":"Robert L."}],"department":[{"_id":"DaZi"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"9483","extern":"1","pmid":1,"title":"Regulation of imprinted gene expression in Arabidopsis endosperm","abstract":[{"text":"Imprinted genes are expressed primarily or exclusively from either the maternal or paternal allele, a phenomenon that occurs in flowering plants and mammals. Flowering plant imprinted gene expression has been described primarily in endosperm, a terminal nutritive tissue consumed by the embryo during seed development or after germination. Imprinted expression in Arabidopsis thaliana endosperm is orchestrated by differences in cytosine DNA methylation between the paternal and maternal genomes as well as by Polycomb group proteins. Currently, only 11 imprinted A. thaliana genes are known. Here, we use extensive sequencing of cDNA libraries to identify 9 paternally expressed and 34 maternally expressed imprinted genes in A. thaliana endosperm that are regulated by the DNA-demethylating glycosylase DEMETER, the DNA methyltransferase MET1, and/or the core Polycomb group protein FIE. These genes encode transcription factors, proteins involved in hormone signaling, components of the ubiquitin protein degradation pathway, regulators of histone and DNA methylation, and small RNA pathway proteins. We also identify maternally expressed genes that may be regulated by unknown mechanisms or deposited from maternal tissues. We did not detect any imprinted genes in the embryo. Our results show that imprinted gene expression is an extensive mechanistically complex phenomenon that likely affects multiple aspects of seed development.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1073/pnas.1019273108"}],"date_published":"2011-02-01T00:00:00Z","issue":"5","date_updated":"2021-12-14T08:33:49Z","citation":{"ama":"Hsieh T-F, Shin J, Uzawa R, et al. Regulation of imprinted gene expression in Arabidopsis endosperm. <i>Proceedings of the National Academy of Sciences</i>. 2011;108(5):1755-1762. doi:<a href=\"https://doi.org/10.1073/pnas.1019273108\">10.1073/pnas.1019273108</a>","apa":"Hsieh, T.-F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M. J., … Fischer, R. L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1019273108\">https://doi.org/10.1073/pnas.1019273108</a>","mla":"Hsieh, Tzung-Fu, et al. “Regulation of Imprinted Gene Expression in Arabidopsis Endosperm.” <i>Proceedings of the National Academy of Sciences</i>, vol. 108, no. 5, National Academy of Sciences, 2011, pp. 1755–62, doi:<a href=\"https://doi.org/10.1073/pnas.1019273108\">10.1073/pnas.1019273108</a>.","ieee":"T.-F. Hsieh <i>et al.</i>, “Regulation of imprinted gene expression in Arabidopsis endosperm,” <i>Proceedings of the National Academy of Sciences</i>, vol. 108, no. 5. National Academy of Sciences, pp. 1755–1762, 2011.","short":"T.-F. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M.J. Bauer, M. Hashimoto, R.C. Kirkbride, J.J. Harada, D. Zilberman, R.L. Fischer, Proceedings of the National Academy of Sciences 108 (2011) 1755–1762.","ista":"Hsieh T-F, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride RC, Harada JJ, Zilberman D, Fischer RL. 2011. Regulation of imprinted gene expression in Arabidopsis endosperm. Proceedings of the National Academy of Sciences. 108(5), 1755–1762.","chicago":"Hsieh, Tzung-Fu, Juhyun Shin, Rie Uzawa, Pedro Silva, Stephanie Cohen, Matthew J. Bauer, Meryl Hashimoto, et al. “Regulation of Imprinted Gene Expression in Arabidopsis Endosperm.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2011. <a href=\"https://doi.org/10.1073/pnas.1019273108\">https://doi.org/10.1073/pnas.1019273108</a>."},"oa_version":"Published Version","type":"journal_article","publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"scopus_import":"1","volume":108,"year":"2011","external_id":{"pmid":["21257907"]},"oa":1,"quality_controlled":"1","article_processing_charge":"No","intvolume":"       108","publication":"Proceedings of the National Academy of Sciences","page":"1755-1762","day":"01","date_created":"2021-06-07T07:40:38Z","status":"public","language":[{"iso":"eng"}],"article_type":"original","month":"02"},{"month":"06","language":[{"iso":"eng"}],"status":"public","date_created":"2021-06-08T06:23:39Z","day":"14","publication":"Developmental Cell","page":"735-736","intvolume":"        20","article_processing_charge":"No","quality_controlled":"1","oa":1,"external_id":{"pmid":["21664571"]},"volume":20,"year":"2011","type":"other_academic_publication","publication_identifier":{"eissn":["1878-1551"],"issn":["1534-5807"]},"oa_version":"Published Version","citation":{"apa":"Zilberman, D. (2011). <i>Balancing parental contributions in plant embryonic gene activation</i>. <i>Developmental Cell</i> (Vol. 20, pp. 735–736). Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">https://doi.org/10.1016/j.devcel.2011.05.018</a>","ama":"Zilberman D. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>. Vol 20. Elsevier; 2011:735-736. doi:<a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">10.1016/j.devcel.2011.05.018</a>","short":"D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.","mla":"Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene Activation.” <i>Developmental Cell</i>, vol. 20, no. 6, Elsevier, 2011, pp. 735–36, doi:<a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">10.1016/j.devcel.2011.05.018</a>.","ieee":"D. Zilberman, <i>Balancing parental contributions in plant embryonic gene activation</i>, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.","ista":"Zilberman D. 2011. Balancing parental contributions in plant embryonic gene activation, Elsevier,p.","chicago":"Zilberman, Daniel. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>. <i>Developmental Cell</i>. Vol. 20. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">https://doi.org/10.1016/j.devcel.2011.05.018</a>."},"date_updated":"2021-12-14T08:34:37Z","date_published":"2011-06-14T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.1016/j.devcel.2011.05.018","open_access":"1"}],"issue":"6","abstract":[{"lang":"eng","text":"Little is known about chromatin remodeling events immediately after fertilization. A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory pathways that silence transposable elements are responsible for global delayed activation of gene expression in the early Arabidopsis embryo."}],"title":"Balancing parental contributions in plant embryonic gene activation","pmid":1,"extern":"1","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"9522","department":[{"_id":"DaZi"}],"publication_status":"published","author":[{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel","last_name":"Zilberman","first_name":"Daniel"}],"doi":"10.1016/j.devcel.2011.05.018","publisher":"Elsevier"},{"department":[{"_id":"HeEd"}],"publication_status":"published","author":[{"full_name":"Gonzalez-Diaz, Rocio","first_name":"Rocio","last_name":"Gonzalez-Diaz"},{"id":"29F89302-F248-11E8-B48F-1D18A9856A87","full_name":"Ion, Adrian","last_name":"Ion","first_name":"Adrian"},{"last_name":"Jimenez","first_name":"Maria Jose","full_name":"Jimenez, Maria Jose"},{"full_name":"Poyatos, Regina","last_name":"Poyatos","first_name":"Regina"}],"doi":"10.1007/978-3-642-23672-3_35","publisher":"Springer Nature","alternative_title":["LNCS"],"_id":"9648","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2021-08-12T13:53:17Z","main_file_link":[{"url":"http://hdl.handle.net/11441/30766","open_access":"1"}],"date_published":"2011-08-01T00:00:00Z","abstract":[{"lang":"eng","text":"In this paper, we establish a correspondence between the incremental algorithm for computing AT-models [8,9] and the one for computing persistent homology [6,14,15]. We also present a decremental algorithm for computing AT-models that allows to extend the persistence computation to a wider setting. Finally, we show how to combine incremental and decremental techniques for persistent homology computation."}],"title":"Incremental-decremental algorithm for computing AT-models and persistent homology","year":"2011","volume":6854,"scopus_import":"1","publication_identifier":{"eissn":["16113349"],"isbn":["9783642236716"],"issn":["03029743"]},"type":"conference","citation":{"chicago":"Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” In <i>Computer Analysis of Images and Patterns</i>, 6854:286–93. Springer Nature, 2011. <a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">https://doi.org/10.1007/978-3-642-23672-3_35</a>.","ista":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental algorithm for computing AT-models and persistent homology. Computer Analysis of Images and Patterns. CAIP: International Conference on Computer Analysis of Images and Patterns, LNCS, vol. 6854, 286–293.","short":"R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.","mla":"Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” <i>Computer Analysis of Images and Patterns</i>, vol. 6854, Springer Nature, 2011, pp. 286–93, doi:<a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">10.1007/978-3-642-23672-3_35</a>.","ieee":"R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental algorithm for computing AT-models and persistent homology,” in <i>Computer Analysis of Images and Patterns</i>, Seville, Spain, 2011, vol. 6854, pp. 286–293.","apa":"Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., &#38; Poyatos, R. (2011). Incremental-decremental algorithm for computing AT-models and persistent homology. In <i>Computer Analysis of Images and Patterns</i> (Vol. 6854, pp. 286–293). Seville, Spain: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">https://doi.org/10.1007/978-3-642-23672-3_35</a>","ama":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm for computing AT-models and persistent homology. In: <i>Computer Analysis of Images and Patterns</i>. Vol 6854. Springer Nature; 2011:286-293. doi:<a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">10.1007/978-3-642-23672-3_35</a>"},"oa_version":"Published Version","oa":1,"intvolume":"      6854","quality_controlled":"1","article_processing_charge":"No","status":"public","date_created":"2021-07-11T22:01:19Z","day":"01","page":"286-293","publication":"Computer Analysis of Images and Patterns","conference":{"start_date":"2011-08-29","location":"Seville, Spain","end_date":"2011-08-31","name":"CAIP: International Conference on Computer Analysis of Images and Patterns"},"month":"08","language":[{"iso":"eng"}]},{"title":"Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice","publication":"Physical Review B - Condensed Matter and Materials Physics","abstract":[{"lang":"eng","text":"Motivated by recent experiments on the material Ba3NiSb 2O9, we consider a spin-one quantum antiferromagnet on a triangular lattice with the Heisenberg bilinear and biquadratic exchange interactions and a single-ion anisotropy. Using a fermionic &quot;triplon&quot; representation for spins, we study the phase diagram within mean-field theory. In addition to a fully gapped spin-liquid ground state, we find a state where one gapless triplon mode with a Fermi surface coexists with d+id topological pairing of the other triplons. Despite the existence of a Fermi surface, this ground state has fully gapped bulk spin excitations. Such a state has linear in-temperature specific heat and constant in-plane spin susceptibility, with an unusually high Wilson ratio."}],"day":"03","issue":"18","date_created":"2018-12-11T11:49:27Z","main_file_link":[{"url":"https://arxiv.org/abs/1108.3070","open_access":"1"}],"date_published":"2011-11-03T00:00:00Z","status":"public","date_updated":"2021-01-12T08:22:18Z","citation":{"ieee":"M. Serbyn, T. Senthil, and P. Lee, “Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 18. American Physical Society, 2011.","mla":"Serbyn, Maksym, et al. “Exotic S=1 Spin-Liquid State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 18, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">10.1103/PhysRevB.84.180403</a>.","short":"M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials Physics 84 (2011).","ama":"Serbyn M, Senthil T, Lee P. Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2011;84(18). doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">10.1103/PhysRevB.84.180403</a>","apa":"Serbyn, M., Senthil, T., &#38; Lee, P. (2011). Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">https://doi.org/10.1103/PhysRevB.84.180403</a>","chicago":"Serbyn, Maksym, Todadri Senthil, and Patrick Lee. “Exotic S=1 Spin-Liquid State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">https://doi.org/10.1103/PhysRevB.84.180403</a>.","ista":"Serbyn M, Senthil T, Lee P. 2011. Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. Physical Review B - Condensed Matter and Materials Physics. 84(18)."},"month":"11","type":"journal_article","volume":84,"year":"2011","publisher":"American Physical Society","publist_id":"6432","doi":"10.1103/PhysRevB.84.180403","oa":1,"publication_status":"published","author":[{"last_name":"Serbyn","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","full_name":"Maksym Serbyn"},{"full_name":"Senthil, Todadri S","first_name":"Todadri","last_name":"Senthil"},{"first_name":"Patrick","last_name":"Lee","full_name":"Lee, Patrick"}],"quality_controlled":0,"_id":"967","extern":1,"intvolume":"        84"},{"date_published":"2011-04-01T00:00:00Z","date_created":"2018-12-11T11:49:27Z","issue":"13","status":"public","date_updated":"2021-01-12T08:22:19Z","publication":"Physical Review Letters","title":"Serbyn et al. Reply:","day":"01","abstract":[{"lang":"eng","text":"A Reply to the Comment by Andrei Sergeev, M. Reizer, and V. Mitin."}],"type":"journal_article","month":"04","volume":106,"year":"2011","citation":{"ama":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. Serbyn et al. Reply: <i>Physical Review Letters</i>. 2011;106(13). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">10.1103/PhysRevLett.106.139702</a>","apa":"Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2011). Serbyn et al. Reply: <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">https://doi.org/10.1103/PhysRevLett.106.139702</a>","mla":"Serbyn, Maksym, et al. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>, vol. 106, no. 13, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">10.1103/PhysRevLett.106.139702</a>.","ieee":"M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Serbyn et al. Reply:,” <i>Physical Review Letters</i>, vol. 106, no. 13. American Physical Society, 2011.","short":"M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, Physical Review Letters 106 (2011).","ista":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2011. Serbyn et al. Reply: Physical Review Letters. 106(13).","chicago":"Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">https://doi.org/10.1103/PhysRevLett.106.139702</a>."},"author":[{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Maksym Serbyn","orcid":"0000-0002-2399-5827","last_name":"Serbyn","first_name":"Maksym"},{"full_name":"Skvortsov, Mikhail A","first_name":"Mikhail","last_name":"Skvortsov"},{"full_name":"Varlamov, Andrei A","last_name":"Varlamov","first_name":"Andrei"},{"first_name":"Victor","last_name":"Galitski","full_name":"Galitski, Victor M"}],"publication_status":"published","publisher":"American Physical Society","doi":"10.1103/PhysRevLett.106.139702","publist_id":"6433","_id":"968","quality_controlled":0,"intvolume":"       106","extern":1},{"_id":"969","quality_controlled":0,"extern":1,"intvolume":"        83","oa":1,"author":[{"last_name":"Serbyn","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Maksym Serbyn","orcid":"0000-0002-2399-5827"},{"last_name":"Lee","first_name":"Patrick","full_name":"Lee, Patrick"}],"publication_status":"published","publisher":"American Physical Society","publist_id":"6434","doi":"10.1103/PhysRevB.83.024506","month":"01","type":"journal_article","year":"2011","volume":83,"citation":{"ama":"Serbyn M, Lee P. Isotope effect on the superfluid density in conventional and high-temperature superconductors. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2011;83(2). doi:<a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">10.1103/PhysRevB.83.024506</a>","apa":"Serbyn, M., &#38; Lee, P. (2011). Isotope effect on the superfluid density in conventional and high-temperature superconductors. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">https://doi.org/10.1103/PhysRevB.83.024506</a>","short":"M. Serbyn, P. Lee, Physical Review B - Condensed Matter and Materials Physics 83 (2011).","mla":"Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density in Conventional and High-Temperature Superconductors.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 83, no. 2, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">10.1103/PhysRevB.83.024506</a>.","ieee":"M. Serbyn and P. Lee, “Isotope effect on the superfluid density in conventional and high-temperature superconductors,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 83, no. 2. American Physical Society, 2011.","ista":"Serbyn M, Lee P. 2011. Isotope effect on the superfluid density in conventional and high-temperature superconductors. Physical Review B - Condensed Matter and Materials Physics. 83(2).","chicago":"Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density in Conventional and High-Temperature Superconductors.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">https://doi.org/10.1103/PhysRevB.83.024506</a>."},"date_created":"2018-12-11T11:49:28Z","issue":"2","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1009.2429"}],"date_published":"2011-01-19T00:00:00Z","status":"public","date_updated":"2021-01-12T08:22:19Z","title":"Isotope effect on the superfluid density in conventional and high-temperature superconductors","publication":"Physical Review B - Condensed Matter and Materials Physics","abstract":[{"text":"We investigate the isotope effect on the London penetration depth of a superconductor which measures n S/m*, the ratio of superfluid density to effective mass. We use a simplified model of electrons weakly coupled to a single phonon frequency ω E, but assume that the energy gap Δ does not have any isotope effect. Nevertheless, we find an isotope effect for n S/m* which is significant if Δ is sufficiently large that it becomes comparable to ω E, a regime of interest to high-T c cuprate superconductors and possibly other families of unconventional superconductors with relatively high T c. Our model is too simple to describe the cuprates and it gives the wrong sign of the isotope effect when compared with experiment, but it is a proof of principle that the isotope effect exists for n S/m* in materials where the pairing gap and T c are not of phonon origin and have no isotope effect.","lang":"eng"}],"day":"19"},{"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","_id":"9762","oa":1,"author":[{"full_name":"Palero, Ferran","orcid":"0000-0002-0343-8329","id":"3F0E2A22-F248-11E8-B48F-1D18A9856A87","first_name":"Ferran","last_name":"Palero"},{"full_name":"Abello, Pere","first_name":"Pere","last_name":"Abello"},{"full_name":"Macpherson, Enrique","first_name":"Enrique","last_name":"Macpherson"},{"last_name":"Beaumont","first_name":"Mark","full_name":"Beaumont, Mark"},{"full_name":"Pascual, Marta","first_name":"Marta","last_name":"Pascual"}],"department":[{"_id":"NiBa"}],"publisher":"IST Austria","doi":"10.5061/dryad.299h8","type":"research_data_reference","month":"05","year":"2011","oa_version":"Published Version","citation":{"short":"F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).","mla":"Palero, Ferran, et al. <i>Data from: Effect of Oceanographic Barriers and Overfishing on the Population Genetic Structure of the European Spiny Lobster (Palinurus Elephas)</i>. IST Austria, 2011, doi:<a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>.","ieee":"F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.","apa":"Palero, F., Abello, P., Macpherson, E., Beaumont, M., &#38; Pascual, M. (2011). Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). IST Austria. <a href=\"https://doi.org/10.5061/dryad.299h8\">https://doi.org/10.5061/dryad.299h8</a>","ama":"Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). 2011. doi:<a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>","chicago":"Palero, Ferran, Pere Abello, Enrique Macpherson, Mark Beaumont, and Marta Pascual. “Data from: Effect of Oceanographic Barriers and Overfishing on the Population Genetic Structure of the European Spiny Lobster (Palinurus Elephas).” IST Austria, 2011. <a href=\"https://doi.org/10.5061/dryad.299h8\">https://doi.org/10.5061/dryad.299h8</a>.","ista":"Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas), IST Austria, <a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>."},"main_file_link":[{"url":"https://doi.org/10.5061/dryad.299h8","open_access":"1"}],"date_published":"2011-05-12T00:00:00Z","date_created":"2021-08-02T07:11:19Z","status":"public","date_updated":"2023-02-23T11:25:25Z","title":"Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas)","related_material":{"record":[{"status":"public","id":"3395","relation":"used_in_publication"}]},"day":"12","abstract":[{"text":"Defining population structure and genetic diversity levels is of the utmost importance for developing efficient conservation strategies. Overfishing has caused mean annual catches of the European spiny lobster (Palinurus elephas) to decrease alarmingly along its distribution area. In this context, there is a need for comprehensive studies to evaluate the genetic health of the exploited populations. The present work is based on a set of 10 nuclear markers amplified in 331 individuals from 10 different localities covering most of P. elephas distribution area. Samples from Atlantic and Mediterranean basins showed small but significant differences, indicating that P. elephas populations do not behave as a single panmictic unit but form two partially-overlapping groups. Despite intense overfishing, our dataset did not recover a recent bottleneck signal, and showed a large and stable historical effective size instead. This result could be accounted for by specific life history traits (reproduction and longevity) and the limitations of molecular markers in covering very recent timescales for non temporal samples. Our study emphasizes the necessity of integrating information on effective population sizes and life history parameters when evaluating population connectivity levels from genetic data.","lang":"eng"}]},{"publisher":"Institute of Electrical and Electronics Engineers","doi":"10.1109/isbi.2011.5872394","publication_status":"published","author":[{"full_name":"Sommer, Christoph M","orcid":"0000-0003-1216-9105","id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph M","last_name":"Sommer"},{"first_name":"Christoph","last_name":"Straehle","full_name":"Straehle, Christoph"},{"full_name":"Köthe, Ullrich","first_name":"Ullrich","last_name":"Köthe"},{"full_name":"Hamprecht, Fred A.","last_name":"Hamprecht","first_name":"Fred A."}],"oa":1,"department":[{"_id":"Bio"}],"_id":"9943","quality_controlled":"1","article_processing_charge":"No","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","extern":"1","conference":{"location":"Chicago, Illinois, USA","start_date":"2011-03-30","name":"ISBI: International Symposium on Biomedical Imaging","end_date":"2011-04-02"},"publication":"2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro","title":"Ilastik: Interactive learning and segmentation toolkit","abstract":[{"lang":"eng","text":"Segmentation is the process of partitioning digital images into meaningful regions. The analysis of biological high content images often requires segmentation as a first step. We propose ilastik as an easy-to-use tool which allows the user without expertise in image processing to perform segmentation and classification in a unified way. ilastik learns from labels provided by the user through a convenient mouse interface. Based on these labels, ilastik infers a problem specific segmentation. A random forest classifier is used in the learning step, in which each pixel's neighborhood is characterized by a set of generic (nonlinear) features. ilastik supports up to three spatial plus one spectral dimension and makes use of all dimensions in the feature calculation. ilastik provides realtime feedback that enables the user to interactively refine the segmentation result and hence further fine-tune the classifier. An uncertainty measure guides the user to ambiguous regions in the images. Real time performance is achieved by multi-threading which fully exploits the capabilities of modern multi-core machines. Once a classifier has been trained on a set of representative images, it can be exported and used to automatically process a very large number of images (e.g. using the CellProfiler pipeline). ilastik is an open source project and released under the BSD license at www.ilastik.org."}],"day":"09","date_created":"2021-08-19T11:49:58Z","date_published":"2011-06-09T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://www.researchgate.net/publication/224241106_Ilastik_Interactive_learning_and_segmentation_toolkit"}],"status":"public","date_updated":"2023-02-23T14:13:38Z","oa_version":"Preprint","keyword":["image segmentation","biomedical imaging","three dimensional displays","neurons","retina","observers","image color analysis"],"citation":{"chicago":"Sommer, Christoph M, Christoph Straehle, Ullrich Köthe, and Fred A. Hamprecht. “Ilastik: Interactive Learning and Segmentation Toolkit.” In <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers, 2011. <a href=\"https://doi.org/10.1109/isbi.2011.5872394\">https://doi.org/10.1109/isbi.2011.5872394</a>.","ista":"Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging.","ieee":"C. M. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, “Ilastik: Interactive learning and segmentation toolkit,” in <i>2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro</i>, Chicago, Illinois, USA, 2011.","mla":"Sommer, Christoph M., et al. “Ilastik: Interactive Learning and Segmentation Toolkit.” <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>, Institute of Electrical and Electronics Engineers, 2011, doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872394\">10.1109/isbi.2011.5872394</a>.","short":"C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011.","apa":"Sommer, C. M., Straehle, C., Köthe, U., &#38; Hamprecht, F. A. (2011). Ilastik: Interactive learning and segmentation toolkit. In <i>2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro</i>. Chicago, Illinois, USA: Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/isbi.2011.5872394\">https://doi.org/10.1109/isbi.2011.5872394</a>","ama":"Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning and segmentation toolkit. In: <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers; 2011. doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872394\">10.1109/isbi.2011.5872394</a>"},"language":[{"iso":"eng"}],"publication_identifier":{"issn":["1945-7928"],"isbn":["978-1-4244-4127-3"],"eissn":["1945-8452"]},"month":"06","type":"conference","year":"2011"},{"_id":"10907","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"HeEd"}],"author":[{"full_name":"Artner, Nicole M.","last_name":"Artner","first_name":"Nicole M."},{"last_name":"Ion","first_name":"Adrian","id":"29F89302-F248-11E8-B48F-1D18A9856A87","full_name":"Ion, Adrian"},{"full_name":"Kropatsch, Walter G.","first_name":"Walter G.","last_name":"Kropatsch"}],"publication_status":"published","doi":"10.1007/978-3-642-20844-7_22","publisher":"Springer","alternative_title":["LNCS"],"year":"2011","volume":6658,"scopus_import":"1","publication_identifier":{"issn":["0302-9743"],"eisbn":["9783642208447"],"eissn":["1611-3349"],"isbn":["9783642208430"]},"type":"conference","citation":{"apa":"Artner, N. M., Ion, A., &#38; Kropatsch, W. G. (2011). Spatio-temporal extraction of articulated models in a graph pyramid. In X. Jiang, M. Ferrer, &#38; A. Torsello (Eds.), <i>Graph-Based Representations in Pattern Recognition</i> (Vol. 6658, pp. 215–224). Berlin, Heidelberg: Springer. <a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">https://doi.org/10.1007/978-3-642-20844-7_22</a>","ama":"Artner NM, Ion A, Kropatsch WG. Spatio-temporal extraction of articulated models in a graph pyramid. In: Jiang X, Ferrer M, Torsello A, eds. <i>Graph-Based Representations in Pattern Recognition</i>. Vol 6658. LNIP. Berlin, Heidelberg: Springer; 2011:215-224. doi:<a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">10.1007/978-3-642-20844-7_22</a>","short":"N.M. Artner, A. Ion, W.G. Kropatsch, in:, X. Jiang, M. Ferrer, A. Torsello (Eds.), Graph-Based Representations in Pattern Recognition, Springer, Berlin, Heidelberg, 2011, pp. 215–224.","mla":"Artner, Nicole M., et al. “Spatio-Temporal Extraction of Articulated Models in a Graph Pyramid.” <i>Graph-Based Representations in Pattern Recognition</i>, edited by Xiaoyi Jiang et al., vol. 6658, Springer, 2011, pp. 215–24, doi:<a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">10.1007/978-3-642-20844-7_22</a>.","ieee":"N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of articulated models in a graph pyramid,” in <i>Graph-Based Representations in Pattern Recognition</i>, Münster, Germany, 2011, vol. 6658, pp. 215–224.","ista":"Artner NM, Ion A, Kropatsch WG. 2011. Spatio-temporal extraction of articulated models in a graph pyramid. Graph-Based Representations in Pattern Recognition. GbRPR: Graph-based Representations in Pattern RecognitionLNIP, LNCS, vol. 6658, 215–224.","chicago":"Artner, Nicole M., Adrian Ion, and Walter G. Kropatsch. “Spatio-Temporal Extraction of Articulated Models in a Graph Pyramid.” In <i>Graph-Based Representations in Pattern Recognition</i>, edited by Xiaoyi Jiang, Miquel Ferrer, and Andrea Torsello, 6658:215–24. LNIP. Berlin, Heidelberg: Springer, 2011. <a href=\"https://doi.org/10.1007/978-3-642-20844-7_22\">https://doi.org/10.1007/978-3-642-20844-7_22</a>."},"oa_version":"None","date_updated":"2023-09-05T14:10:15Z","place":"Berlin, Heidelberg","date_published":"2011-06-01T00:00:00Z","editor":[{"full_name":"Jiang, Xiaoyi","last_name":"Jiang","first_name":"Xiaoyi"},{"first_name":"Miquel","last_name":"Ferrer","full_name":"Ferrer, Miquel"},{"full_name":"Torsello, Andrea","last_name":"Torsello","first_name":"Andrea"}],"abstract":[{"lang":"eng","text":"This paper presents a method to create a model of an articulated object using the planar motion in an initialization video. The model consists of rigid parts connected by points of articulation. The rigid parts are described by the positions of salient feature-points tracked throughout the video. Following a filtering step that identifies points that belong to different objects, rigid parts are found by a grouping process in a graph pyramid. Valid articulation points are selected by verifying multiple hypotheses for each pair of parts."}],"title":"Spatio-temporal extraction of articulated models in a graph pyramid","intvolume":"      6658","quality_controlled":"1","article_processing_charge":"No","acknowledgement":"This work has been partially supported by the Austrian Science Fund under grants S9103-N13 and P18716-N13.","series_title":"LNIP","month":"06","language":[{"iso":"eng"}],"status":"public","date_created":"2022-03-21T08:08:35Z","day":"01","page":"215-224","conference":{"start_date":"2011-05-18","location":"Münster, Germany","name":"GbRPR: Graph-based Representations in Pattern Recognition","end_date":"2011-05-20"},"publication":"Graph-Based Representations in Pattern Recognition"},{"language":[{"iso":"eng"}],"article_type":"original","month":"07","publication":"Journal of Cell Biology","page":"27-37","day":"04","date_created":"2022-04-07T07:52:18Z","status":"public","article_processing_charge":"No","quality_controlled":"1","intvolume":"       194","external_id":{"pmid":["21727197"]},"oa":1,"oa_version":"Published Version","citation":{"ista":"Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37.","chicago":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2011. <a href=\"https://doi.org/10.1083/jcb.201012154\">https://doi.org/10.1083/jcb.201012154</a>.","apa":"Talamas, J. A., &#38; Hetzer, M. (2011). POM121 and Sun1 play a role in early steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.201012154\">https://doi.org/10.1083/jcb.201012154</a>","ama":"Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase NPC assembly. <i>Journal of Cell Biology</i>. 2011;194(1):27-37. doi:<a href=\"https://doi.org/10.1083/jcb.201012154\">10.1083/jcb.201012154</a>","short":"J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.","ieee":"J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of interphase NPC assembly,” <i>Journal of Cell Biology</i>, vol. 194, no. 1. Rockefeller University Press, pp. 27–37, 2011.","mla":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” <i>Journal of Cell Biology</i>, vol. 194, no. 1, Rockefeller University Press, 2011, pp. 27–37, doi:<a href=\"https://doi.org/10.1083/jcb.201012154\">10.1083/jcb.201012154</a>."},"keyword":["Cell Biology"],"type":"journal_article","publication_identifier":{"eissn":["1540-8140"],"issn":["0021-9525"]},"scopus_import":"1","year":"2011","volume":194,"title":"POM121 and Sun1 play a role in early steps of interphase NPC assembly","abstract":[{"text":"Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear envelope (NE) reformation and into an intact NE as cells progress through interphase. Although recent studies have shown that NPC formation occurs by two different molecular mechanisms at two distinct cell cycle stages, little is known about the molecular players that mediate the fusion of the outer and inner nuclear membranes to form pores. In this paper, we provide evidence that the transmembrane nucleoporin (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the INM and ONM. Additionally, Sun1, an INM protein that is known to interact with the cytoskeleton, was specifically required for interphase assembly and localized with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact transiently to promote early steps of interphase NPC assembly.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1083/jcb.201012154"}],"date_published":"2011-07-04T00:00:00Z","issue":"1","date_updated":"2022-07-18T08:53:46Z","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11094","extern":"1","pmid":1,"publisher":"Rockefeller University Press","doi":"10.1083/jcb.201012154","publication_status":"published","author":[{"full_name":"Talamas, Jessica A.","last_name":"Talamas","first_name":"Jessica A."},{"first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"}]},{"language":[{"iso":"eng"}],"month":"06","article_type":"letter_note","page":"255-257","publication":"Current Opinion in Cell Biology","day":"01","date_created":"2022-04-07T07:52:27Z","status":"public","quality_controlled":"1","article_processing_charge":"No","intvolume":"        23","external_id":{"pmid":["21592757"]},"keyword":["Cell Biology"],"oa_version":"None","citation":{"ista":"Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology. 23(3), 255–257.","chicago":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">https://doi.org/10.1016/j.ceb.2011.04.013</a>.","apa":"Hetzer, M., &#38; Cavalli, G. (2011). Editorial overview. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">https://doi.org/10.1016/j.ceb.2011.04.013</a>","ama":"Hetzer M, Cavalli G. Editorial overview. <i>Current Opinion in Cell Biology</i>. 2011;23(3):255-257. doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">10.1016/j.ceb.2011.04.013</a>","ieee":"M. Hetzer and G. Cavalli, “Editorial overview,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.","mla":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.04.013\">10.1016/j.ceb.2011.04.013</a>.","short":"M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257."},"publication_identifier":{"issn":["0955-0674"]},"type":"journal_article","year":"2011","volume":23,"scopus_import":"1","title":"Editorial overview","issue":"3","date_published":"2011-06-01T00:00:00Z","date_updated":"2022-07-18T08:39:40Z","_id":"11095","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","extern":"1","pmid":1,"publisher":"Elsevier","doi":"10.1016/j.ceb.2011.04.013","publication_status":"published","author":[{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","last_name":"HETZER","first_name":"Martin W"},{"full_name":"Cavalli, Giacomo","last_name":"Cavalli","first_name":"Giacomo"}]}]