[{"_id":"7749","intvolume":"        15","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2012-03-01T00:00:00Z","status":"public","publication":"Ecology Letters","issue":"3","abstract":[{"text":"Although studies on laboratory species and natural populations of vertebrates have shown reproduction to impair later performance, little is known of the age‐specific associations between reproduction and survival, and how such findings apply to the ageing of large, long‐lived species. Herein we develop a framework to examine population‐level patterns of reproduction and survival across lifespan in long‐lived organisms, and decompose those changes into individual‐level effects, and the effects of age‐specific trade‐offs between fitness components. We apply this to an extensive longitudinal dataset on female semi‐captive Asian timber elephants (Elephas maximus) and report the first evidence of age‐specific fitness declines that are driven by age‐specific associations between fitness components in a long‐lived mammal. Associations between reproduction and survival are positive in early life, but negative in later life with up to 71% of later‐life survival declines associated with investing in the production of offspring within this population of this critically endangered species.","lang":"eng"}],"page":"260-266","date_created":"2020-04-30T11:01:26Z","citation":{"ieee":"M. R. Robinson, K. U. Mar, and V. Lummaa, “Senescence and age-specific trade-offs between reproduction and survival in female Asian elephants,” <i>Ecology Letters</i>, vol. 15, no. 3. Wiley, pp. 260–266, 2012.","chicago":"Robinson, Matthew Richard, Khyne U Mar, and Virpi Lummaa. “Senescence and Age-Specific Trade-Offs between Reproduction and Survival in Female Asian Elephants.” <i>Ecology Letters</i>. Wiley, 2012. <a href=\"https://doi.org/10.1111/j.1461-0248.2011.01735.x\">https://doi.org/10.1111/j.1461-0248.2011.01735.x</a>.","mla":"Robinson, Matthew Richard, et al. “Senescence and Age-Specific Trade-Offs between Reproduction and Survival in Female Asian Elephants.” <i>Ecology Letters</i>, vol. 15, no. 3, Wiley, 2012, pp. 260–66, doi:<a href=\"https://doi.org/10.1111/j.1461-0248.2011.01735.x\">10.1111/j.1461-0248.2011.01735.x</a>.","short":"M.R. Robinson, K.U. Mar, V. Lummaa, Ecology Letters 15 (2012) 260–266.","ama":"Robinson MR, Mar KU, Lummaa V. Senescence and age-specific trade-offs between reproduction and survival in female Asian elephants. <i>Ecology Letters</i>. 2012;15(3):260-266. doi:<a href=\"https://doi.org/10.1111/j.1461-0248.2011.01735.x\">10.1111/j.1461-0248.2011.01735.x</a>","apa":"Robinson, M. R., Mar, K. U., &#38; Lummaa, V. (2012). Senescence and age-specific trade-offs between reproduction and survival in female Asian elephants. <i>Ecology Letters</i>. Wiley. <a href=\"https://doi.org/10.1111/j.1461-0248.2011.01735.x\">https://doi.org/10.1111/j.1461-0248.2011.01735.x</a>","ista":"Robinson MR, Mar KU, Lummaa V. 2012. Senescence and age-specific trade-offs between reproduction and survival in female Asian elephants. Ecology Letters. 15(3), 260–266."},"article_type":"original","extern":"1","month":"03","oa_version":"None","author":[{"first_name":"Matthew Richard","last_name":"Robinson","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","orcid":"0000-0001-8982-8813","full_name":"Robinson, Matthew Richard"},{"first_name":"Khyne U","last_name":"Mar","full_name":"Mar, Khyne U"},{"last_name":"Lummaa","first_name":"Virpi","full_name":"Lummaa, Virpi"}],"article_processing_charge":"No","volume":15,"type":"journal_article","year":"2012","publisher":"Wiley","date_updated":"2021-01-12T08:15:16Z","publication_identifier":{"issn":["1461-023X"]},"publication_status":"published","day":"01","quality_controlled":"1","title":"Senescence and age-specific trade-offs between reproduction and survival in female Asian elephants","doi":"10.1111/j.1461-0248.2011.01735.x"},{"quality_controlled":"1","title":"Finite-size scaling at the jamming transition","doi":"10.1103/physrevlett.109.095704","publisher":"American Physical Society","date_updated":"2021-01-12T08:15:27Z","publication_identifier":{"issn":["0031-9007","1079-7114"]},"publication_status":"published","day":"27","year":"2012","article_processing_charge":"No","volume":109,"type":"journal_article","month":"08","article_number":"095704","author":[{"last_name":"Goodrich","first_name":"Carl Peter","id":"EB352CD2-F68A-11E9-89C5-A432E6697425","full_name":"Goodrich, Carl Peter","orcid":"0000-0002-1307-5074"},{"last_name":"Liu","first_name":"Andrea J.","full_name":"Liu, Andrea J."},{"full_name":"Nagel, Sidney R.","last_name":"Nagel","first_name":"Sidney R."}],"oa_version":"None","date_created":"2020-04-30T11:44:12Z","citation":{"ama":"Goodrich CP, Liu AJ, Nagel SR. Finite-size scaling at the jamming transition. <i>Physical Review Letters</i>. 2012;109(9). doi:<a href=\"https://doi.org/10.1103/physrevlett.109.095704\">10.1103/physrevlett.109.095704</a>","apa":"Goodrich, C. P., Liu, A. J., &#38; Nagel, S. R. (2012). Finite-size scaling at the jamming transition. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.109.095704\">https://doi.org/10.1103/physrevlett.109.095704</a>","ista":"Goodrich CP, Liu AJ, Nagel SR. 2012. Finite-size scaling at the jamming transition. Physical Review Letters. 109(9), 095704.","ieee":"C. P. Goodrich, A. J. Liu, and S. R. Nagel, “Finite-size scaling at the jamming transition,” <i>Physical Review Letters</i>, vol. 109, no. 9. American Physical Society, 2012.","chicago":"Goodrich, Carl Peter, Andrea J. Liu, and Sidney R. Nagel. “Finite-Size Scaling at the Jamming Transition.” <i>Physical Review Letters</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/physrevlett.109.095704\">https://doi.org/10.1103/physrevlett.109.095704</a>.","short":"C.P. Goodrich, A.J. Liu, S.R. Nagel, Physical Review Letters 109 (2012).","mla":"Goodrich, Carl Peter, et al. “Finite-Size Scaling at the Jamming Transition.” <i>Physical Review Letters</i>, vol. 109, no. 9, 095704, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/physrevlett.109.095704\">10.1103/physrevlett.109.095704</a>."},"extern":"1","article_type":"original","date_published":"2012-08-27T00:00:00Z","status":"public","issue":"9","publication":"Physical Review Letters","abstract":[{"text":"We present an analysis of finite-size effects in jammed packings of N soft, frictionless spheres at zero temperature. There is a 1/N correction to the discrete jump in the contact number at the transition so that jammed packings exist only above isostaticity. As a result, the canonical power-law scalings of the contact number and elastic moduli break down at low pressure. These quantities exhibit scaling collapse with a nontrivial scaling function, demonstrating that the jamming transition can be considered a phase transition. Scaling is achieved as a function of N in both two and three dimensions, indicating an upper critical dimension of 2.","lang":"eng"}],"language":[{"iso":"eng"}],"_id":"7776","intvolume":"       109","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"date_created":"2018-12-11T11:48:34Z","extern":"1","scopus_import":"1","oa_version":"None","intvolume":"       287","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2012-12-28T00:00:00Z","status":"public","publication":"Journal of Biological Chemistry","publist_id":"6852","abstract":[{"text":"Fungal cell walls frequently contain a polymer of mannose and galactose called galactomannan. In the pathogenic filamentous fungus Aspergillus fumigatus, this polysaccharide is made of a linear mannan backbone with side chains of galactofuran and is anchored to the plasma membrane via a glycosylphosphatidylinositol or is covalently linked to the cell wall. To date, the biosynthesis and significance of this polysaccharide are unknown. The present data demonstrate that deletion of the Golgi UDP-galactofuranose transporter GlfB or the GDP-mannose transporter GmtA leads to the absence of galactofuran or galactomannan, respectively. This indicates that the biosynthesis of galactomannan probably occurs in the lumen of the Golgi apparatus and thus contrasts with the biosynthesis of other fungal cell wall polysaccharides studied to date that takes place at the plasma membrane. Transglycosylation of galactomannan from the membrane to the cell wall is hypothesized because both the cell wall-bound and membrane-bound polysaccharide forms are affected in the generated mutants. Considering the severe growth defect of the A. fumigatus GmtA-deficient mutant, proving this paradigm might provide new targets for antifungal therapy.","lang":"eng"}],"publisher":"American Society for Biochemistry and Molecular Biology","publication_status":"published","pmid":1,"quality_controlled":"1","volume":287,"type":"journal_article","citation":{"chicago":"Engel, Jakob, Philipp S Schmalhorst, and Françoise Routier. “Biosynthesis of the Fungal Cell Wall Polysaccharide Galactomannan Requires Intraluminal GDP-Mannose.” <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology, 2012. <a href=\"https://doi.org/10.1074/jbc.M112.398321\">https://doi.org/10.1074/jbc.M112.398321</a>.","ieee":"J. Engel, P. S. Schmalhorst, and F. Routier, “Biosynthesis of the fungal cell wall polysaccharide galactomannan requires intraluminal GDP-mannose,” <i>Journal of Biological Chemistry</i>, vol. 287, no. 53. American Society for Biochemistry and Molecular Biology, pp. 44418–44424, 2012.","mla":"Engel, Jakob, et al. “Biosynthesis of the Fungal Cell Wall Polysaccharide Galactomannan Requires Intraluminal GDP-Mannose.” <i>Journal of Biological Chemistry</i>, vol. 287, no. 53, American Society for Biochemistry and Molecular Biology, 2012, pp. 44418–24, doi:<a href=\"https://doi.org/10.1074/jbc.M112.398321\">10.1074/jbc.M112.398321</a>.","short":"J. Engel, P.S. Schmalhorst, F. Routier, Journal of Biological Chemistry 287 (2012) 44418–44424.","ama":"Engel J, Schmalhorst PS, Routier F. Biosynthesis of the fungal cell wall polysaccharide galactomannan requires intraluminal GDP-mannose. <i>Journal of Biological Chemistry</i>. 2012;287(53):44418-44424. doi:<a href=\"https://doi.org/10.1074/jbc.M112.398321\">10.1074/jbc.M112.398321</a>","ista":"Engel J, Schmalhorst PS, Routier F. 2012. Biosynthesis of the fungal cell wall polysaccharide galactomannan requires intraluminal GDP-mannose. Journal of Biological Chemistry. 287(53), 44418–44424.","apa":"Engel, J., Schmalhorst, P. S., &#38; Routier, F. (2012). Biosynthesis of the fungal cell wall polysaccharide galactomannan requires intraluminal GDP-mannose. <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology. <a href=\"https://doi.org/10.1074/jbc.M112.398321\">https://doi.org/10.1074/jbc.M112.398321</a>"},"article_type":"original","month":"12","author":[{"full_name":"Engel, Jakob","first_name":"Jakob","last_name":"Engel"},{"id":"309D50DA-F248-11E8-B48F-1D18A9856A87","first_name":"Philipp S","last_name":"Schmalhorst","orcid":"0000-0002-5795-0133","full_name":"Schmalhorst, Philipp S"},{"last_name":"Routier","first_name":"Françoise","full_name":"Routier, Françoise"}],"acknowledgement":"This work was supported by the Deutsche Forschungsgemeinschaft.","language":[{"iso":"eng"}],"_id":"801","issue":"53","page":"44418 - 44424","date_updated":"2022-03-21T07:57:14Z","day":"28","external_id":{"pmid":["23139423"]},"title":"Biosynthesis of the fungal cell wall polysaccharide galactomannan requires intraluminal GDP-mannose","doi":"10.1074/jbc.M112.398321","article_processing_charge":"No","year":"2012"},{"date_updated":"2021-01-12T08:16:35Z","day":"11","publication_identifier":{"eisbn":["1550-2376"],"issn":["1539-3755"]},"external_id":{"pmid":["23005454"]},"doi":"10.1103/physreve.86.011909","title":"Non-normal amplification in random balanced neuronal networks","article_processing_charge":"No","year":"2012","citation":{"apa":"Hennequin, G., Vogels, T. P., &#38; Gerstner, W. (2012). Non-normal amplification in random balanced neuronal networks. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physreve.86.011909\">https://doi.org/10.1103/physreve.86.011909</a>","ista":"Hennequin G, Vogels TP, Gerstner W. 2012. Non-normal amplification in random balanced neuronal networks. Physical Review E. 86(1), 011909.","ama":"Hennequin G, Vogels TP, Gerstner W. Non-normal amplification in random balanced neuronal networks. <i>Physical Review E</i>. 2012;86(1). doi:<a href=\"https://doi.org/10.1103/physreve.86.011909\">10.1103/physreve.86.011909</a>","mla":"Hennequin, Guillaume, et al. “Non-Normal Amplification in Random Balanced Neuronal Networks.” <i>Physical Review E</i>, vol. 86, no. 1, 011909, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/physreve.86.011909\">10.1103/physreve.86.011909</a>.","short":"G. Hennequin, T.P. Vogels, W. Gerstner, Physical Review E 86 (2012).","ieee":"G. Hennequin, T. P. Vogels, and W. Gerstner, “Non-normal amplification in random balanced neuronal networks,” <i>Physical Review E</i>, vol. 86, no. 1. American Physical Society, 2012.","chicago":"Hennequin, Guillaume, Tim P Vogels, and Wulfram Gerstner. “Non-Normal Amplification in Random Balanced Neuronal Networks.” <i>Physical Review E</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/physreve.86.011909\">https://doi.org/10.1103/physreve.86.011909</a>."},"article_type":"original","author":[{"full_name":"Hennequin, Guillaume","last_name":"Hennequin","first_name":"Guillaume"},{"id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels","first_name":"Tim P","orcid":"0000-0003-3295-6181","full_name":"Vogels, Tim P"},{"last_name":"Gerstner","first_name":"Wulfram","full_name":"Gerstner, Wulfram"}],"month":"06","article_number":"011909","language":[{"iso":"eng"}],"_id":"8024","issue":"1","publisher":"American Physical Society","publication_status":"published","quality_controlled":"1","pmid":1,"type":"journal_article","volume":86,"date_created":"2020-06-25T13:09:06Z","extern":"1","oa_version":"None","intvolume":"        86","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","publication":"Physical Review E","date_published":"2012-06-11T00:00:00Z","status":"public","abstract":[{"text":"In dynamical models of cortical networks, the recurrent connectivity can amplify the input given to the network in two distinct ways. One is induced by the presence of near-critical eigenvalues in the connectivity matrix W, producing large but slow activity fluctuations along the corresponding eigenvectors (dynamical slowing). The other relies on W not being normal, which allows the network activity to make large but fast excursions along specific directions. Here we investigate the trade-off between non-normal amplification and dynamical slowing in the spontaneous activity of large random neuronal networks composed of excitatory and inhibitory neurons. We use a Schur decomposition of W to separate the two amplification mechanisms. Assuming linear stochastic dynamics, we derive an exact expression for the expected amount of purely non-normal amplification. We find that amplification is very limited if dynamical slowing must be kept weak. We conclude that, to achieve strong transient amplification with little slowing, the connectivity must be structured. We show that unidirectional connections between neurons of the same type together with reciprocal connections between neurons of different types, allow for amplification already in the fast dynamical regime. Finally, our results also shed light on the differences between balanced networks in which inhibition exactly cancels excitation and those where inhibition dominates.","lang":"eng"}]},{"publication_status":"published","publisher":"Company of Biologists","quality_controlled":"1","volume":125,"type":"journal_article","extern":"1","date_created":"2018-12-11T11:48:37Z","oa_version":"None","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","tmp":{"image":"/images/cc_by_nc_sa.png","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"},"intvolume":"       125","abstract":[{"lang":"eng","text":"Using correlated live-cell imaging and electron tomography we found that actin branch junctions in protruding and treadmilling lamellipodia are not concentrated at the front as previously supposed, but link actin filament subsets in which there is a continuum of distances from a junction to the filament plus ends, for up to at least 1 mm. When branch sites were observed closely spaced on the same filament their separation was commonly a multiple of the actin helical repeat of 36 nm. Image averaging of branch junctions in the tomograms yielded a model for the in vivo branch at 2.9 nm resolution, which was comparable with that derived for the in vitro actin- Arp2/3 complex. Lamellipodium initiation was monitored in an intracellular wound-healing model and was found to involve branching from the sides of actin filaments oriented parallel to the plasmalemma. Many filament plus ends, presumably capped, terminated behind the lamellipodium tip and localized on the dorsal and ventral surfaces of the actin network. These findings reveal how branching events initiate and maintain a network of actin filaments of variable length, and provide the first structural model of the branch junction in vivo. A possible role of filament capping in generating the lamellipodium leaflet is discussed and a mathematical model of protrusion is also presented."}],"date_published":"2012-06-01T00:00:00Z","status":"public","publist_id":"6842","publication":"Journal of Cell Science","day":"01","date_updated":"2021-01-12T08:16:47Z","title":"Actin branching in the initiation and maintenance of lamellipodia","doi":"10.1242/jcs.107623","oa":1,"has_accepted_license":"1","year":"2012","citation":{"ista":"Vinzenz M, Nemethova M, Schur FK, Mueller J, Narita A, Urban E, Winkler C, Schmeiser C, Koestler S, Rottner K, Resch G, Maéda Y, Small J. 2012. Actin branching in the initiation and maintenance of lamellipodia. Journal of Cell Science. 125(11), 2775–2785.","apa":"Vinzenz, M., Nemethova, M., Schur, F. K., Mueller, J., Narita, A., Urban, E., … Small, J. (2012). Actin branching in the initiation and maintenance of lamellipodia. <i>Journal of Cell Science</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/jcs.107623\">https://doi.org/10.1242/jcs.107623</a>","ama":"Vinzenz M, Nemethova M, Schur FK, et al. Actin branching in the initiation and maintenance of lamellipodia. <i>Journal of Cell Science</i>. 2012;125(11):2775-2785. doi:<a href=\"https://doi.org/10.1242/jcs.107623\">10.1242/jcs.107623</a>","short":"M. Vinzenz, M. Nemethova, F.K. Schur, J. Mueller, A. Narita, E. Urban, C. Winkler, C. Schmeiser, S. Koestler, K. Rottner, G. Resch, Y. Maéda, J. Small, Journal of Cell Science 125 (2012) 2775–2785.","mla":"Vinzenz, Marlene, et al. “Actin Branching in the Initiation and Maintenance of Lamellipodia.” <i>Journal of Cell Science</i>, vol. 125, no. 11, Company of Biologists, 2012, pp. 2775–85, doi:<a href=\"https://doi.org/10.1242/jcs.107623\">10.1242/jcs.107623</a>.","chicago":"Vinzenz, Marlene, Maria Nemethova, Florian KM Schur, Jan Mueller, Akihiro Narita, Edit Urban, Christoph Winkler, et al. “Actin Branching in the Initiation and Maintenance of Lamellipodia.” <i>Journal of Cell Science</i>. Company of Biologists, 2012. <a href=\"https://doi.org/10.1242/jcs.107623\">https://doi.org/10.1242/jcs.107623</a>.","ieee":"M. Vinzenz <i>et al.</i>, “Actin branching in the initiation and maintenance of lamellipodia,” <i>Journal of Cell Science</i>, vol. 125, no. 11. Company of Biologists, pp. 2775–2785, 2012."},"ddc":["570"],"file_date_updated":"2020-07-14T12:48:09Z","month":"06","author":[{"full_name":"Vinzenz, Marlene","first_name":"Marlene","last_name":"Vinzenz"},{"id":"34E27F1C-F248-11E8-B48F-1D18A9856A87","last_name":"Nemethova","first_name":"Maria","full_name":"Nemethova, Maria"},{"last_name":"Schur","first_name":"Florian","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4790-8078","full_name":"Schur, Florian"},{"first_name":"Jan","last_name":"Mueller","full_name":"Mueller, Jan"},{"full_name":"Narita, Akihiro","last_name":"Narita","first_name":"Akihiro"},{"full_name":"Urban, Edit","last_name":"Urban","first_name":"Edit"},{"full_name":"Winkler, Christoph","last_name":"Winkler","first_name":"Christoph"},{"full_name":"Schmeiser, Christian","last_name":"Schmeiser","first_name":"Christian"},{"last_name":"Koestler","first_name":"Stefan","full_name":"Koestler, Stefan"},{"full_name":"Rottner, Klemens","last_name":"Rottner","first_name":"Klemens"},{"last_name":"Resch","first_name":"Guenter","full_name":"Resch, Guenter"},{"full_name":"Maéda, Yuichiro","last_name":"Maéda","first_name":"Yuichiro"},{"full_name":"Small, John","last_name":"Small","first_name":"John"}],"file":[{"file_size":3326073,"file_id":"5956","access_level":"open_access","date_created":"2019-02-12T08:54:51Z","date_updated":"2020-07-14T12:48:09Z","content_type":"application/pdf","relation":"main_file","file_name":"2012_Biologists_Vinzenz.pdf","checksum":"2f59e15cc3a85bb500a9887cef2aab67","creator":"kschuh"}],"acknowledgement":"This work was supported by the Austrian Science Fund [projects FWF I516-B09 and FWF P21292-B09 to J.V.S.]; the Vienna Science and Technology Fund [WWTF-grant numbers MA 09-004 to J.V.S. and C.S], ZIT - The Technology Agency of the City of Vienna [VSOE, CMCN to J.V.S. and G.P.R.]; the Deutsche Forschungsgemeinschaft [grant number RO 2414/1-2 to K.R.]; the Daiko research foundation [grant number 9134 to A.N.]; and a Grant-in-Aid for Scientific Research [S, grant number 20227008 to Y.M.] and a Grant-in-Aid for Young Scientists [B, grant number 22770145 to A.N.] (B) from The Ministry of Education, Culture, Sports, Science and Technology of the Japanese Government. Deposited in PMC for immediate release. We thank Tibor Kulcsar for assistance with graphics.","_id":"808","language":[{"iso":"eng"}],"page":"2775 - 2785","issue":"11"},{"year":"2012","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1011.3434"}],"type":"journal_article","volume":2013,"oa":1,"doi":"https://doi.org/10.1515/crelle.2012.039","title":"Inhomogeneous cubic congruences and rational points on del Pezzo surfaces","quality_controlled":0,"day":"03","publication_status":"published","date_updated":"2021-01-12T06:52:41Z","publisher":"Walter de Gruyter","page":"1 - 65","abstract":[{"lang":"eng","text":"For given non-zero integers a, b, q we investigate the density of solutions (x, y) ∈ ℤ2 to the binary cubic congruence ax2 + by3 ≡ 0 mod q, and use it to establish the Manin conjecture for a singular del Pezzo surface of degree 2 defined over ℚ."}],"publication":"Journal fur die Reine und Angewandte Mathematik","publist_id":"7750","issue":"680","date_published":"2012-04-03T00:00:00Z","status":"public","intvolume":"      2013","_id":"171","author":[{"last_name":"Browning","first_name":"Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","full_name":"Timothy Browning"},{"last_name":"Baier","first_name":"Stephan","full_name":"Baier, Stephan"}],"month":"04","extern":1,"citation":{"mla":"Browning, Timothy D., and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” <i>Journal Fur Die Reine Und Angewandte Mathematik</i>, vol. 2013, no. 680, Walter de Gruyter, 2012, pp. 1–65, doi:<a href=\"https://doi.org/10.1515/crelle.2012.039\">https://doi.org/10.1515/crelle.2012.039</a>.","short":"T.D. Browning, S. Baier, Journal Fur Die Reine Und Angewandte Mathematik 2013 (2012) 1–65.","chicago":"Browning, Timothy D, and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” <i>Journal Fur Die Reine Und Angewandte Mathematik</i>. Walter de Gruyter, 2012. <a href=\"https://doi.org/10.1515/crelle.2012.039\">https://doi.org/10.1515/crelle.2012.039</a>.","ieee":"T. D. Browning and S. Baier, “Inhomogeneous cubic congruences and rational points on del Pezzo surfaces,” <i>Journal fur die Reine und Angewandte Mathematik</i>, vol. 2013, no. 680. Walter de Gruyter, pp. 1–65, 2012.","ista":"Browning TD, Baier S. 2012. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal fur die Reine und Angewandte Mathematik. 2013(680), 1–65.","apa":"Browning, T. D., &#38; Baier, S. (2012). Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. <i>Journal Fur Die Reine Und Angewandte Mathematik</i>. Walter de Gruyter. <a href=\"https://doi.org/10.1515/crelle.2012.039\">https://doi.org/10.1515/crelle.2012.039</a>","ama":"Browning TD, Baier S. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. <i>Journal fur die Reine und Angewandte Mathematik</i>. 2012;2013(680):1-65. doi:<a href=\"https://doi.org/10.1515/crelle.2012.039\">https://doi.org/10.1515/crelle.2012.039</a>"},"date_created":"2018-12-11T11:45:00Z"},{"author":[{"id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","first_name":"Anna","last_name":"Kicheva","full_name":"Anna Kicheva","orcid":"0000-0003-4509-4998"},{"first_name":"Michael","last_name":"Cohen","full_name":"Cohen, Michael H"},{"first_name":"James","last_name":"Briscoe","full_name":"Briscoe, James"}],"month":"10","citation":{"chicago":"Kicheva, Anna, Michael Cohen, and James Briscoe. “Developmental Pattern Formation: Insights from Physics and Biology.” <i>Science</i>. American Association for the Advancement of Science, 2012. <a href=\"https://doi.org/10.1126/science.1225182\">https://doi.org/10.1126/science.1225182</a>.","ieee":"A. Kicheva, M. Cohen, and J. Briscoe, “Developmental pattern formation: Insights from physics and biology,” <i>Science</i>, vol. 338, no. 6104. American Association for the Advancement of Science, pp. 210–212, 2012.","mla":"Kicheva, Anna, et al. “Developmental Pattern Formation: Insights from Physics and Biology.” <i>Science</i>, vol. 338, no. 6104, American Association for the Advancement of Science, 2012, pp. 210–12, doi:<a href=\"https://doi.org/10.1126/science.1225182\">10.1126/science.1225182</a>.","short":"A. Kicheva, M. Cohen, J. Briscoe, Science 338 (2012) 210–212.","ama":"Kicheva A, Cohen M, Briscoe J. Developmental pattern formation: Insights from physics and biology. <i>Science</i>. 2012;338(6104):210-212. doi:<a href=\"https://doi.org/10.1126/science.1225182\">10.1126/science.1225182</a>","ista":"Kicheva A, Cohen M, Briscoe J. 2012. Developmental pattern formation: Insights from physics and biology. Science. 338(6104), 210–212.","apa":"Kicheva, A., Cohen, M., &#38; Briscoe, J. (2012). Developmental pattern formation: Insights from physics and biology. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1225182\">https://doi.org/10.1126/science.1225182</a>"},"date_created":"2018-12-11T11:53:40Z","extern":1,"publist_id":"5404","publication":"Science","issue":"6104","status":"public","date_published":"2012-10-12T00:00:00Z","page":"210 - 212","abstract":[{"lang":"eng","text":"The spatial organization of cell fates during development involves the interpretation of morphogen gradients by cellular signaling cascades and transcriptional networks. Recent studies use biophysical models, genetics, and quantitative imaging to unravel how tissue-level morphogen behavior arises from subcellular events. Moreover, data from several systems show that morphogen gradients, downstream signaling, and the activity of cell-intrinsic transcriptional networks change dynamically during pattern formation. Studies from Drosophila and now also vertebrates suggest that transcriptional network dynamics are central to the generation of gene expression patterns. Together, this leads to the view that pattern formation is an emergent behavior that results from the coordination of events occurring across molecular, cellular, and tissue scales. The development of novel approaches to study this complex process remains a challenge."}],"intvolume":"       338","_id":"1725","acknowledgement":"Funding provided by the Medical Research Council (UK). ","quality_controlled":0,"doi":"10.1126/science.1225182","title":"Developmental pattern formation: Insights from physics and biology","date_updated":"2021-01-12T06:52:47Z","publisher":"American Association for the Advancement of Science","day":"12","publication_status":"published","year":"2012","type":"journal_article","volume":338},{"publication_status":"published","day":"13","publisher":"American Chemical Society","date_updated":"2021-01-12T06:53:00Z","title":"Multifunctional devices and logic gates with undoped silicon nanowires","doi":"10.1021/nl300930m","quality_controlled":0,"volume":12,"type":"journal_article","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1208.1465","open_access":"1"}],"year":"2012","extern":1,"date_created":"2018-12-11T11:53:50Z","citation":{"ieee":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, and S. De Franceschi, “Multifunctional devices and logic gates with undoped silicon nanowires,” <i>Nano Letters</i>, vol. 12, no. 6. American Chemical Society, pp. 3074–3079, 2012.","chicago":"Mongillo, Massimo, Panayotis Spathis, Georgios Katsaros, Pascal Gentile, and Silvano De Franceschi. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” <i>Nano Letters</i>. American Chemical Society, 2012. <a href=\"https://doi.org/10.1021/nl300930m\">https://doi.org/10.1021/nl300930m</a>.","short":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, S. De Franceschi, Nano Letters 12 (2012) 3074–3079.","mla":"Mongillo, Massimo, et al. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” <i>Nano Letters</i>, vol. 12, no. 6, American Chemical Society, 2012, pp. 3074–79, doi:<a href=\"https://doi.org/10.1021/nl300930m\">10.1021/nl300930m</a>.","ama":"Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. Multifunctional devices and logic gates with undoped silicon nanowires. <i>Nano Letters</i>. 2012;12(6):3074-3079. doi:<a href=\"https://doi.org/10.1021/nl300930m\">10.1021/nl300930m</a>","apa":"Mongillo, M., Spathis, P., Katsaros, G., Gentile, P., &#38; De Franceschi, S. (2012). Multifunctional devices and logic gates with undoped silicon nanowires. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nl300930m\">https://doi.org/10.1021/nl300930m</a>","ista":"Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. 2012. Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. 12(6), 3074–3079."},"month":"06","author":[{"full_name":"Mongillo, Massimo","last_name":"Mongillo","first_name":"Massimo"},{"full_name":"Spathis, Panayotis N","last_name":"Spathis","first_name":"Panayotis"},{"full_name":"Georgios Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros"},{"full_name":"Gentile, Pascal","first_name":"Pascal","last_name":"Gentile"},{"last_name":"De Franceschi","first_name":"Silvano","full_name":"De Franceschi, Silvano"}],"acknowledgement":"This work was supported by the Agence Nationale de la Recherche (ANR) through the ACCESS and COHESION projects and by the European Commission through the Chemtronics program MEST-CT-2005-020513","intvolume":"        12","_id":"1756","abstract":[{"lang":"eng","text":"We report on the electronic transport properties of multiple-gate devices fabricated from undoped silicon nanowires. Understanding and control of the relevant transport mechanisms was achieved by means of local electrostatic gating and temperature-dependent measurements. The roles of the source/drain contacts and of the silicon channel could be independently evaluated and tuned. Wrap gates surrounding the silicide-silicon contact interfaces were proved to be effective in inducing a full suppression of the contact Schottky barriers, thereby enabling carrier injection down to liquid helium temperature. By independently tuning the effective Schottky barrier heights, a variety of reconfigurable device functionalities could be obtained. In particular, the same nanowire device could be configured to work as a Schottky barrier transistor, a Schottky diode, or a p-n diode with tunable polarities. This versatility was eventually exploited to realize a NAND logic gate with gain well above one."}],"page":"3074 - 3079","status":"public","date_published":"2012-06-13T00:00:00Z","issue":"6","publist_id":"5368","publication":"Nano Letters"},{"year":"2012","main_file_link":[{"url":"http://arxiv.org/abs/1208.0666","open_access":"1"}],"volume":109,"type":"journal_article","oa":1,"title":"Monolithic growth of ultrathin Ge nanowires on Si(001) ","doi":"10.1103/PhysRevLett.109.085502","quality_controlled":0,"publication_status":"published","day":"23","publisher":"American Physical Society","date_updated":"2021-01-12T06:53:00Z","abstract":[{"text":"Self-assembled Ge wires with a height of only 3 unit cells and a length of up to 2 micrometers were grown on Si(001) by means of a catalyst-free method based on molecular beam epitaxy. The wires grow horizontally along either the [100] or the [010] direction. On atomically flat surfaces, they exhibit a highly uniform, triangular cross section. A simple thermodynamic model accounts for the existence of a preferential base width for longitudinal expansion, in quantitative agreement with the experimental findings. Despite the absence of intentional doping, the first transistor-type devices made from single wires show low-resistive electrical contacts and single-hole transport at sub-Kelvin temperatures. In view of their exceptionally small and self-defined cross section, these Ge wires hold promise for the realization of hole systems with exotic properties and provide a new development route for silicon-based nanoelectronics.","lang":"eng"}],"date_published":"2012-08-23T00:00:00Z","status":"public","issue":"8","publist_id":"5367","publication":"Physical Review Letters","acknowledgement":"We acknowledge the financial support by the DFG SPP1386, P. Chen and D. J. Thurmer for MBE assistance, R. Wacquez for providing the ultrathin SOI wafers, and G. Bauer, Y. Hu, X. Jehl, S. Kiravittaya, C. Klöffel, E. J. H. Lee, F. Liu, D. Loss, and S. Mahapatra for helpful discussions. G. K. acknowledges support from the European commission via a Marie Curie Carrer Integration Grant. S. D. F. acknowledges support from the European Research Council through the starting grant program","_id":"1757","intvolume":"       109","month":"08","author":[{"full_name":"Zhang, Jianjun","first_name":"Jianjun","last_name":"Zhang"},{"full_name":"Georgios Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros"},{"last_name":"Montalenti","first_name":"Francesco","full_name":"Montalenti, Francesco"},{"first_name":"Daniele","last_name":"Scopece","full_name":"Scopece, Daniele"},{"last_name":"Rezaev","first_name":"Roman","full_name":"Rezaev, Roman O"},{"first_name":"Christine","last_name":"Mickel","full_name":"Mickel, Christine H"},{"last_name":"Rellinghaus","first_name":"Bernd","full_name":"Rellinghaus, Bernd"},{"full_name":"Miglio, Leo P","last_name":"Miglio","first_name":"Leo"},{"last_name":"De Franceschi","first_name":"Silvano","full_name":"De Franceschi, Silvano"},{"full_name":"Rastelli, Armando","last_name":"Rastelli","first_name":"Armando"},{"full_name":"Schmidt, Oliver G","last_name":"Schmidt","first_name":"Oliver"}],"extern":1,"citation":{"ista":"Zhang J, Katsaros G, Montalenti F, Scopece D, Rezaev R, Mickel C, Rellinghaus B, Miglio L, De Franceschi S, Rastelli A, Schmidt O. 2012. Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. 109(8).","apa":"Zhang, J., Katsaros, G., Montalenti, F., Scopece, D., Rezaev, R., Mickel, C., … Schmidt, O. (2012). Monolithic growth of ultrathin Ge nanowires on Si(001) . <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.109.085502\">https://doi.org/10.1103/PhysRevLett.109.085502</a>","ama":"Zhang J, Katsaros G, Montalenti F, et al. Monolithic growth of ultrathin Ge nanowires on Si(001) . <i>Physical Review Letters</i>. 2012;109(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.085502\">10.1103/PhysRevLett.109.085502</a>","mla":"Zhang, Jianjun, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” <i>Physical Review Letters</i>, vol. 109, no. 8, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.085502\">10.1103/PhysRevLett.109.085502</a>.","short":"J. Zhang, G. Katsaros, F. Montalenti, D. Scopece, R. Rezaev, C. Mickel, B. Rellinghaus, L. Miglio, S. De Franceschi, A. Rastelli, O. Schmidt, Physical Review Letters 109 (2012).","chicago":"Zhang, Jianjun, Georgios Katsaros, Francesco Montalenti, Daniele Scopece, Roman Rezaev, Christine Mickel, Bernd Rellinghaus, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” <i>Physical Review Letters</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/PhysRevLett.109.085502\">https://doi.org/10.1103/PhysRevLett.109.085502</a>.","ieee":"J. Zhang <i>et al.</i>, “Monolithic growth of ultrathin Ge nanowires on Si(001) ,” <i>Physical Review Letters</i>, vol. 109, no. 8. American Physical Society, 2012."},"date_created":"2018-12-11T11:53:51Z"},{"month":"10","author":[{"last_name":"Lee","first_name":"Eduardo","full_name":"Lee, Eduardo J"},{"last_name":"Jiang","first_name":"Xiaocheng","full_name":"Jiang, Xiaocheng"},{"full_name":"Aguado, Ramón","last_name":"Aguado","first_name":"Ramón"},{"full_name":"Georgios Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros","first_name":"Georgios"},{"full_name":"Lieber, Charles M","last_name":"Lieber","first_name":"Charles"},{"full_name":"De Franceschi, Silvano","last_name":"De Franceschi","first_name":"Silvano"}],"citation":{"ista":"Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. 2012. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. 109(18).","apa":"Lee, E., Jiang, X., Aguado, R., Katsaros, G., Lieber, C., &#38; De Franceschi, S. (2012). Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.109.186802\">https://doi.org/10.1103/PhysRevLett.109.186802</a>","ama":"Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. <i>Physical Review Letters</i>. 2012;109(18). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.186802\">10.1103/PhysRevLett.109.186802</a>","short":"E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, S. De Franceschi, Physical Review Letters 109 (2012).","mla":"Lee, Eduardo, et al. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” <i>Physical Review Letters</i>, vol. 109, no. 18, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.186802\">10.1103/PhysRevLett.109.186802</a>.","chicago":"Lee, Eduardo, Xiaocheng Jiang, Ramón Aguado, Georgios Katsaros, Charles Lieber, and Silvano De Franceschi. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” <i>Physical Review Letters</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/PhysRevLett.109.186802\">https://doi.org/10.1103/PhysRevLett.109.186802</a>.","ieee":"E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, and S. De Franceschi, “Zero-bias anomaly in a nanowire quantum dot coupled to superconductors,” <i>Physical Review Letters</i>, vol. 109, no. 18. American Physical Society, 2012."},"date_created":"2018-12-11T11:53:51Z","extern":1,"status":"public","date_published":"2012-10-31T00:00:00Z","publication":"Physical Review Letters","issue":"18","publist_id":"5366","abstract":[{"text":"We studied the low-energy states of spin-1/2 quantum dots defined in InAs/InP nanowires and coupled to aluminum superconducting leads. By varying the superconducting gap Δ with a magnetic field B we investigated the transition from strong coupling Δ≪T K to weak-coupling Δ≫T K, where T K is the Kondo temperature. Below the critical field, we observe a persisting zero-bias Kondo resonance that vanishes only for low B or higher temperatures, leaving the room to more robust subgap structures at bias voltages between Δ and 2Δ. For strong and approximately symmetric tunnel couplings, a Josephson supercurrent is observed in addition to the Kondo peak. We ascribe the coexistence of a Kondo resonance and a superconducting gap to a significant density of intragap quasiparticle states, and the finite-bias subgap structures to tunneling through Shiba states. Our results, supported by numerical calculations, own relevance also in relation to tunnel-spectroscopy experiments aiming at the observation of Majorana fermions in hybrid nanostructures.","lang":"eng"}],"acknowledgement":"This work was supported by the EU Marie Curie program and by the Agence Nationale de la Recherche. R. A. acknowledges support from the Spanish Ministry of Science and Innovation through Grant No. FIS2009-08744","_id":"1758","intvolume":"       109","quality_controlled":0,"title":"Zero-bias anomaly in a nanowire quantum dot coupled to superconductors","doi":"10.1103/PhysRevLett.109.186802","publisher":"American Physical Society","date_updated":"2021-01-12T06:53:01Z","publication_status":"published","day":"31","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1207.1259"}],"year":"2012","oa":1,"volume":109,"type":"journal_article"},{"extern":1,"citation":{"short":"M. Pechal, S. Berger, A. Abdumalikov, J.M. Fink, J. Mlynek, L. Steffen, A. Wallraff, S. Filipp, Physical Review Letters 108 (2012).","mla":"Pechal, M., et al. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” <i>Physical Review Letters</i>, vol. 108, no. 17, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.108.170401\">10.1103/PhysRevLett.108.170401</a>.","ieee":"M. Pechal <i>et al.</i>, “Geometric phase and nonadiabatic effects in an electronic harmonic oscillator,” <i>Physical Review Letters</i>, vol. 108, no. 17. American Physical Society, 2012.","chicago":"Pechal, M, Stefan Berger, Abdufarrukh Abdumalikov, Johannes M Fink, Jonas Mlynek, L. Steffen, Andreas Wallraff, and Stefan Filipp. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” <i>Physical Review Letters</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/PhysRevLett.108.170401\">https://doi.org/10.1103/PhysRevLett.108.170401</a>.","apa":"Pechal, M., Berger, S., Abdumalikov, A., Fink, J. M., Mlynek, J., Steffen, L., … Filipp, S. (2012). Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.108.170401\">https://doi.org/10.1103/PhysRevLett.108.170401</a>","ista":"Pechal M, Berger S, Abdumalikov A, Fink JM, Mlynek J, Steffen L, Wallraff A, Filipp S. 2012. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. 108(17).","ama":"Pechal M, Berger S, Abdumalikov A, et al. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. <i>Physical Review Letters</i>. 2012;108(17). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.108.170401\">10.1103/PhysRevLett.108.170401</a>"},"date_created":"2018-12-11T11:53:59Z","month":"04","author":[{"first_name":"M","last_name":"Pechal","full_name":"Pechal, M"},{"full_name":"Berger, Stefan T","first_name":"Stefan","last_name":"Berger"},{"first_name":"Abdufarrukh","last_name":"Abdumalikov","full_name":"Abdumalikov, Abdufarrukh A"},{"id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","last_name":"Fink","first_name":"Johannes M","orcid":"0000-0001-8112-028X","full_name":"Johannes Fink"},{"full_name":"Mlynek, Jonas A","first_name":"Jonas","last_name":"Mlynek"},{"first_name":"L.","last_name":"Steffen","full_name":"Steffen, L. Kraig"},{"full_name":"Wallraff, Andreas","last_name":"Wallraff","first_name":"Andreas"},{"first_name":"Stefan","last_name":"Filipp","full_name":"Filipp, Stefan"}],"acknowledgement":"This work is supported by the EU project GEOMDISS, the Austrian Science Foundation (S. F.), and the Swiss National Science Foundation (SNSF)","_id":"1782","intvolume":"       108","abstract":[{"text":"Steering a quantum harmonic oscillator state along cyclic trajectories leads to a path-dependent geometric phase. Here we describe its experimental observation in an electronic harmonic oscillator. We use a superconducting qubit as a nonlinear probe of the phase, which is otherwise unobservable due to the linearity of the oscillator. We show that the geometric phase is, for a variety of cyclic paths, proportional to the area enclosed in the quadrature plane. At the transition to the nonadiabatic regime, we study corrections to the phase and dephasing of the qubit caused by qubit-resonator entanglement. In particular, we identify parameters for which this dephasing mechanism is negligible even in the nonadiabatic regime. The demonstrated controllability makes our system a versatile tool to study geometric phases in open quantum systems and to investigate their potential for quantum information processing.","lang":"eng"}],"date_published":"2012-04-23T00:00:00Z","status":"public","publication":"Physical Review Letters","issue":"17","publist_id":"5333","publication_status":"published","day":"23","publisher":"American Physical Society","date_updated":"2021-01-12T06:53:10Z","title":"Geometric phase and nonadiabatic effects in an electronic harmonic oscillator","doi":"10.1103/PhysRevLett.108.170401","quality_controlled":0,"volume":108,"type":"journal_article","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1109.1157","open_access":"1"}],"year":"2012"},{"date_published":"2012-11-30T00:00:00Z","status":"public","publist_id":"5332","publication":"Physical Review A - Atomic, Molecular, and Optical Physics","issue":"5","abstract":[{"lang":"eng","text":"Nonlinearity and entanglement are two important properties by which physical systems can be identified as nonclassical. We study the dynamics of the resonant interaction of up to N=3 two-level systems and a single mode of the electromagnetic field sharing a single excitation dynamically. We observe coherent vacuum Rabi oscillations and their nonlinear √N speedup by tracking the populations of all qubits and the resonator in time. We use quantum state tomography to show explicitly that the dynamics generates maximally entangled states of the W class in a time limited only by the collective interaction rate. We use an entanglement witness and the 3-tangle to characterize the state whose fidelity F=78% is limited in our experiments by crosstalk arising during the simultaneous qubit manipulations which is absent in a sequential approach with F=91%."}],"acknowledgement":"This work was supported by the Swiss National Science Foundation (SNF) and the EU IP SOLID","_id":"1783","intvolume":"        86","month":"11","author":[{"full_name":"Mlynek, Jonas A","last_name":"Mlynek","first_name":"Jonas"},{"full_name":"Abdumalikov, Abdufarrukh A","first_name":"Abdufarrukh","last_name":"Abdumalikov"},{"last_name":"Fink","first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Johannes Fink","orcid":"0000-0001-8112-028X"},{"full_name":"Steffen, L. Kraig","last_name":"Steffen","first_name":"L."},{"last_name":"Baur","first_name":"Matthias","full_name":"Baur, Matthias P"},{"full_name":"Lang, C","first_name":"C","last_name":"Lang"},{"first_name":"Arjan","last_name":"Van Loo","full_name":"Van Loo, Arjan F"},{"first_name":"Andreas","last_name":"Wallraff","full_name":"Wallraff, Andreas"}],"citation":{"ama":"Mlynek J, Abdumalikov A, Fink JM, et al. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2012;86(5). doi:<a href=\"https://doi.org/10.1103/PhysRevA.86.053838\">10.1103/PhysRevA.86.053838</a>","apa":"Mlynek, J., Abdumalikov, A., Fink, J. M., Steffen, L., Baur, M., Lang, C., … Wallraff, A. (2012). Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.86.053838\">https://doi.org/10.1103/PhysRevA.86.053838</a>","ista":"Mlynek J, Abdumalikov A, Fink JM, Steffen L, Baur M, Lang C, Van Loo A, Wallraff A. 2012. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 86(5).","ieee":"J. Mlynek <i>et al.</i>, “Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 86, no. 5. American Physical Society, 2012.","chicago":"Mlynek, Jonas, Abdufarrukh Abdumalikov, Johannes M Fink, L. Steffen, Matthias Baur, C Lang, Arjan Van Loo, and Andreas Wallraff. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/PhysRevA.86.053838\">https://doi.org/10.1103/PhysRevA.86.053838</a>.","mla":"Mlynek, Jonas, et al. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 86, no. 5, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/PhysRevA.86.053838\">10.1103/PhysRevA.86.053838</a>.","short":"J. Mlynek, A. Abdumalikov, J.M. Fink, L. Steffen, M. Baur, C. Lang, A. Van Loo, A. Wallraff, Physical Review A - Atomic, Molecular, and Optical Physics 86 (2012)."},"date_created":"2018-12-11T11:53:59Z","extern":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1202.5191"}],"year":"2012","oa":1,"volume":86,"type":"journal_article","quality_controlled":0,"title":"Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics","doi":"10.1103/PhysRevA.86.053838","publisher":"American Physical Society","date_updated":"2021-01-12T06:53:10Z","publication_status":"published","day":"30"},{"extern":1,"date_created":"2018-12-11T11:53:59Z","citation":{"short":"C. Eichler, C. Lang, J.M. Fink, J. Govenius, S. Filipp, A. Wallraff, Physical Review Letters 109 (2012).","mla":"Eichler, Christopher, et al. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” <i>Physical Review Letters</i>, vol. 109, no. 24, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.240501\">10.1103/PhysRevLett.109.240501</a>.","chicago":"Eichler, Christopher, C Lang, Johannes M Fink, J Govenius, Stefan Filipp, and Andreas Wallraff. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” <i>Physical Review Letters</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/PhysRevLett.109.240501\">https://doi.org/10.1103/PhysRevLett.109.240501</a>.","ieee":"C. Eichler, C. Lang, J. M. Fink, J. Govenius, S. Filipp, and A. Wallraff, “Observation of entanglement between itinerant microwave photons and a superconducting qubit,” <i>Physical Review Letters</i>, vol. 109, no. 24. American Physical Society, 2012.","ista":"Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. 2012. Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. 109(24).","apa":"Eichler, C., Lang, C., Fink, J. M., Govenius, J., Filipp, S., &#38; Wallraff, A. (2012). Observation of entanglement between itinerant microwave photons and a superconducting qubit. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.109.240501\">https://doi.org/10.1103/PhysRevLett.109.240501</a>","ama":"Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. Observation of entanglement between itinerant microwave photons and a superconducting qubit. <i>Physical Review Letters</i>. 2012;109(24). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.240501\">10.1103/PhysRevLett.109.240501</a>"},"author":[{"last_name":"Eichler","first_name":"Christopher","full_name":"Eichler, Christopher"},{"full_name":"Lang, C","last_name":"Lang","first_name":"C"},{"full_name":"Johannes Fink","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M","last_name":"Fink"},{"full_name":"Govenius, J","last_name":"Govenius","first_name":"J"},{"full_name":"Filipp, Stefan","last_name":"Filipp","first_name":"Stefan"},{"first_name":"Andreas","last_name":"Wallraff","full_name":"Wallraff, Andreas"}],"month":"12","_id":"1784","intvolume":"       109","acknowledgement":"This work was supported by the European Research Council (ERC) through a Starting Grant and by ETHZ","abstract":[{"lang":"eng","text":"A localized qubit entangled with a propagating quantum field is well suited to study nonlocal aspects of quantum mechanics and may also provide a channel to communicate between spatially separated nodes in a quantum network. Here, we report the on-demand generation and characterization of Bell-type entangled states between a superconducting qubit and propagating microwave fields composed of zero-, one-, and two-photon Fock states. Using low noise linear amplification and efficient data acquisition we extract all relevant correlations between the qubit and the photon states and demonstrate entanglement with high fidelity."}],"issue":"24","publist_id":"5330","publication":"Physical Review Letters","date_published":"2012-12-10T00:00:00Z","status":"public","day":"10","publication_status":"published","date_updated":"2021-01-12T06:53:10Z","publisher":"American Physical Society","doi":"10.1103/PhysRevLett.109.240501","title":"Observation of entanglement between itinerant microwave photons and a superconducting qubit","quality_controlled":0,"type":"journal_article","volume":109,"year":"2012","main_file_link":[{"open_access":"0","url":"http://arxiv.org/abs/1209.0441"}]},{"date_published":"2012-03-01T00:00:00Z","status":"public","issue":"3","publication":"Nature Neuroscience","publist_id":"5309","abstract":[{"lang":"eng","text":"Brain circuits are assembled from a large variety of morphologically and functionally diverse cell types. It is not known how the intermingled cell types of an individual adult brain region differ in their expressed genomes. Here we describe an atlas of cell type transcriptomes in one brain region, the mouse retina. We found that each adult cell type expressed a specific set of genes, including a unique set of transcription factors, forming a 'barcode' for cell identity. Cell type transcriptomes carried enough information to categorize cells into morphological classes and types. Several genes that were specifically expressed in particular retinal circuit elements, such as inhibitory neuron types, are associated with eye diseases. The resource described here allows gene expression to be compared across adult retinal cell types, experimenting with specific transcription factors to differentiate stem or somatic cells to retinal cell types, and predicting cellular targets of newly discovered disease-associated genes."}],"page":"487 - 495","acknowledgement":"The study was supported by Friedrich Miescher Institute funds, Alcon award, a National Center of Competence in Research Genetics grant, a European Research Council grant, a Swiss-Hungarian grant, and RETICIRC, TREATRUSH, SEEBETTER and OPTONEURO grants from the European Union to B.R.","_id":"1801","intvolume":"        15","month":"03","author":[{"orcid":"0000-0001-8635-0877","full_name":"Sandra Siegert","id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","first_name":"Sandra","last_name":"Siegert"},{"first_name":"Erik","last_name":"Cabuy","full_name":"Cabuy, Erik"},{"full_name":"Scherf, Brigitte G","last_name":"Scherf","first_name":"Brigitte"},{"first_name":"Hubertus","last_name":"Kohler","full_name":"Kohler, Hubertus"},{"full_name":"Panda, Satchidananda","last_name":"Panda","first_name":"Satchidananda"},{"full_name":"Le, Yunzheng","last_name":"Le","first_name":"Yunzheng"},{"full_name":"Fehling, Hans J","last_name":"Fehling","first_name":"Hans"},{"first_name":"Dimos","last_name":"Gaidatzis","full_name":"Gaidatzis, Dimos"},{"full_name":"Stadler, Michael B","last_name":"Stadler","first_name":"Michael"},{"full_name":"Roska, Botond M","first_name":"Botond","last_name":"Roska"}],"citation":{"ama":"Siegert S, Cabuy E, Scherf B, et al. Transcriptional code and disease map for adult retinal cell types. <i>Nature Neuroscience</i>. 2012;15(3):487-495. doi:<a href=\"https://doi.org/10.1038/nn.3032\">10.1038/nn.3032</a>","ista":"Siegert S, Cabuy E, Scherf B, Kohler H, Panda S, Le Y, Fehling H, Gaidatzis D, Stadler M, Roska B. 2012. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. 15(3), 487–495.","apa":"Siegert, S., Cabuy, E., Scherf, B., Kohler, H., Panda, S., Le, Y., … Roska, B. (2012). Transcriptional code and disease map for adult retinal cell types. <i>Nature Neuroscience</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nn.3032\">https://doi.org/10.1038/nn.3032</a>","chicago":"Siegert, Sandra, Erik Cabuy, Brigitte Scherf, Hubertus Kohler, Satchidananda Panda, Yunzheng Le, Hans Fehling, Dimos Gaidatzis, Michael Stadler, and Botond Roska. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” <i>Nature Neuroscience</i>. Nature Publishing Group, 2012. <a href=\"https://doi.org/10.1038/nn.3032\">https://doi.org/10.1038/nn.3032</a>.","ieee":"S. Siegert <i>et al.</i>, “Transcriptional code and disease map for adult retinal cell types,” <i>Nature Neuroscience</i>, vol. 15, no. 3. Nature Publishing Group, pp. 487–495, 2012.","mla":"Siegert, Sandra, et al. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” <i>Nature Neuroscience</i>, vol. 15, no. 3, Nature Publishing Group, 2012, pp. 487–95, doi:<a href=\"https://doi.org/10.1038/nn.3032\">10.1038/nn.3032</a>.","short":"S. Siegert, E. Cabuy, B. Scherf, H. Kohler, S. Panda, Y. Le, H. Fehling, D. Gaidatzis, M. Stadler, B. Roska, Nature Neuroscience 15 (2012) 487–495."},"date_created":"2018-12-11T11:54:05Z","extern":1,"year":"2012","volume":15,"type":"journal_article","quality_controlled":0,"title":"Transcriptional code and disease map for adult retinal cell types","doi":"10.1038/nn.3032","publisher":"Nature Publishing Group","date_updated":"2021-01-12T06:53:17Z","publication_status":"published","day":"01"},{"author":[{"last_name":"Efremov","first_name":"Rouslan","full_name":"Efremov, Rouslan G"},{"last_name":"Sazanov","first_name":"Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","full_name":"Leonid Sazanov"}],"month":"06","citation":{"mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Structure of Escherichia Coli OmpF Porin from Lipidic Mesophase.” <i>Journal of Structural Biology</i>, vol. 178, no. 3, Academic Press, 2012, pp. 311–18, doi:<a href=\"https://doi.org/10.1016/j.jsb.2012.03.005\">10.1016/j.jsb.2012.03.005</a>.","short":"R. Efremov, L.A. Sazanov, Journal of Structural Biology 178 (2012) 311–318.","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Structure of Escherichia Coli OmpF Porin from Lipidic Mesophase.” <i>Journal of Structural Biology</i>. Academic Press, 2012. <a href=\"https://doi.org/10.1016/j.jsb.2012.03.005\">https://doi.org/10.1016/j.jsb.2012.03.005</a>.","ieee":"R. Efremov and L. A. Sazanov, “Structure of Escherichia coli OmpF porin from lipidic mesophase,” <i>Journal of Structural Biology</i>, vol. 178, no. 3. Academic Press, pp. 311–318, 2012.","ista":"Efremov R, Sazanov LA. 2012. Structure of Escherichia coli OmpF porin from lipidic mesophase. Journal of Structural Biology. 178(3), 311–318.","apa":"Efremov, R., &#38; Sazanov, L. A. (2012). Structure of Escherichia coli OmpF porin from lipidic mesophase. <i>Journal of Structural Biology</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jsb.2012.03.005\">https://doi.org/10.1016/j.jsb.2012.03.005</a>","ama":"Efremov R, Sazanov LA. Structure of Escherichia coli OmpF porin from lipidic mesophase. <i>Journal of Structural Biology</i>. 2012;178(3):311-318. doi:<a href=\"https://doi.org/10.1016/j.jsb.2012.03.005\">10.1016/j.jsb.2012.03.005</a>"},"date_created":"2018-12-11T11:54:59Z","extern":1,"issue":"3","publication":"Journal of Structural Biology","publist_id":"5109","status":"public","date_published":"2012-06-01T00:00:00Z","page":"311 - 318","abstract":[{"text":"Outer membrane protein F, a major component of the Escherichia coli outer membrane, was crystallized for the first time in lipidic mesophase of monoolein in novel space groups, P1 and H32. Due to ease of its purification and crystallization OmpF can be used as a benchmark protein for establishing membrane protein crystallization in meso, as a &quot;membrane lyzozyme&quot; The packing of porin trimers in the crystals of space group H32 is similar to natural outer membranes, providing the first high-resolution insight into the close to native packing of OmpF. Surprisingly, interaction between trimers is mediated exclusively by lipids, without direct protein-protein contacts. Multiple ordered lipids are observed and many of them occupy identical positions independently of the space group, identifying preferential interaction sites of lipid acyl chains. Presence of ordered aliphatic chains close to a positively charged area on the porin surface suggests a position for a lipopolysaccharide binding site on the surface of the major E. coli porins.","lang":"eng"}],"_id":"1972","intvolume":"       178","acknowledgement":"This work was funded by the Medical Research Council.","quality_controlled":0,"doi":"10.1016/j.jsb.2012.03.005","title":"Structure of Escherichia coli OmpF porin from lipidic mesophase","date_updated":"2021-01-12T06:54:26Z","publisher":"Academic Press","day":"01","publication_status":"published","year":"2012","type":"journal_article","volume":178},{"year":"2012","type":"review","volume":1817,"quality_controlled":0,"doi":"10.1016/j.bbabio.2012.02.015","title":"The coupling mechanism of respiratory complex i - A structural and evolutionary perspective","date_updated":"2019-04-26T07:22:06Z","publisher":"Elsevier","day":"01","publication_status":"published","publist_id":"5108","issue":"10","publication":"Biochimica et Biophysica Acta - Bioenergetics","date_published":"2012-10-01T00:00:00Z","status":"public","page":"1785 - 1795","abstract":[{"lang":"eng","text":"Complex I is a key enzyme of the respiratory chain in many organisms. This multi-protein complex with an intricate evolutionary history originated from the unification of prebuilt modules of hydrogenases and transporters. Using recently determined crystallographic structures of complex I we reanalyzed evolutionarily related complexes that couple oxidoreduction to trans-membrane ion translocation. Our analysis points to the previously unnoticed structural homology of the electron input module of formate dehydrogenlyases and subunit NuoG of complex I. We also show that all related to complex I hydrogenases likely operate via a conformation driven mechanism with structural changes generated in the conserved coupling site located at the interface of subunits NuoB/D/H. The coupling apparently originated once in evolutionary history, together with subunit NuoH joining hydrogenase and transport modules. Analysis of quinone oxidoreduction properties and the structure of complex I allows us to suggest a fully reversible coupling mechanism. Our model predicts that: 1) proton access to the ketone groups of the bound quinone is rigorously controlled by the protein, 2) the negative electric charge of the anionic ubiquinol head group is a major driving force for conformational changes."}],"_id":"1976","intvolume":"      1817","acknowledgement":"The work in authors' laboratory was funded by the Medical Research Council.","author":[{"full_name":"Efremov, Rouslan G","first_name":"Rouslan","last_name":"Efremov"},{"full_name":"Leonid Sazanov","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","first_name":"Leonid A"}],"month":"10","citation":{"apa":"Efremov, R., &#38; Sazanov, L. A. (2012). The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bbabio.2012.02.015\">https://doi.org/10.1016/j.bbabio.2012.02.015</a>","ista":"Efremov R, Sazanov LA. 2012. The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. Biochimica et Biophysica Acta - Bioenergetics. 1817(10), 1785–1795.","ama":"Efremov R, Sazanov LA. The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. 2012;1817(10):1785-1795. doi:<a href=\"https://doi.org/10.1016/j.bbabio.2012.02.015\">10.1016/j.bbabio.2012.02.015</a>","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “The Coupling Mechanism of Respiratory Complex i - A Structural and Evolutionary Perspective.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1817, no. 10, Elsevier, 2012, pp. 1785–95, doi:<a href=\"https://doi.org/10.1016/j.bbabio.2012.02.015\">10.1016/j.bbabio.2012.02.015</a>.","short":"R. Efremov, L.A. Sazanov, Biochimica et Biophysica Acta - Bioenergetics 1817 (2012) 1785–1795.","ieee":"R. Efremov and L. A. Sazanov, “The coupling mechanism of respiratory complex i - A structural and evolutionary perspective,” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1817, no. 10. Elsevier, pp. 1785–1795, 2012.","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “The Coupling Mechanism of Respiratory Complex i - A Structural and Evolutionary Perspective.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier, 2012. <a href=\"https://doi.org/10.1016/j.bbabio.2012.02.015\">https://doi.org/10.1016/j.bbabio.2012.02.015</a>."},"date_created":"2018-12-11T11:55:00Z","extern":1},{"date_published":"2012-09-18T00:00:00Z","status":"public","publication":"PNAS","publist_id":"5096","issue":"38","abstract":[{"text":"In the living cell, proteins are able to organize space much larger than their dimensions. In return, changes of intracellular space can influence biochemical reactions, allowing cells to sense their size and shape. Despite the possibility to reconstitute protein self-organization with only a few purified components, we still lack knowledge of how geometrical boundaries affect spatiotemporal protein patterns. Following a minimal systems approach, we used purified proteins and photolithographically patterned membranes to study the influence of spatial confinement on the self-organization of the Min system, a spatial regulator of bacterial cytokinesis, in vitro. We found that the emerging protein pattern responds even to the lateral, two-dimensional geometry of the membrane such that, as in the three-dimensional cell, Min protein waves travel along the longest axis of the membrane patch. This shows that for spatial sensing the Min system does not need to be enclosed in a three-dimensional compartment. Using a computational model we quantitatively analyzed our experimental findings and identified persistent binding of MinE to the membrane as requirement for the Min system to sense geometry. Our results give insight into the interplay between geometrical confinement and biochemical patterns emerging from a nonlinear reaction-diffusion system.\n","lang":"eng"}],"page":"15283 - 15288","acknowledgement":"This work was supported by the Max-Planck-Society (P.S. and M.L.) and by the German Research Foundation as part of the Research Training Group “Nano- and Biotechnologies for Electronic Device Packaging” (GRK 1401) (J.S.) and by the Leibniz-Award (P.S.). ","_id":"1987","intvolume":"       109","month":"09","author":[{"full_name":"Schweizer, Jakob","last_name":"Schweizer","first_name":"Jakob"},{"last_name":"Loose","first_name":"Martin","id":"462D4284-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7309-9724","full_name":"Martin Loose"},{"first_name":"Mike","last_name":"Bonny","full_name":"Bonny, Mike "},{"full_name":"Kruse, Karsten","first_name":"Karsten","last_name":"Kruse"},{"first_name":"Ingolf","last_name":"Mönch","full_name":"Mönch, Ingolf"},{"full_name":"Schwille, Petra ","last_name":"Schwille","first_name":"Petra"}],"citation":{"ama":"Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. Geometry sensing by self-organized protein patterns. <i>PNAS</i>. 2012;109(38):15283-15288. doi:<a href=\"https://doi.org/10.1073/pnas.1206953109\">10.1073/pnas.1206953109</a>","apa":"Schweizer, J., Loose, M., Bonny, M., Kruse, K., Mönch, I., &#38; Schwille, P. (2012). Geometry sensing by self-organized protein patterns. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1206953109\">https://doi.org/10.1073/pnas.1206953109</a>","ista":"Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. 2012. Geometry sensing by self-organized protein patterns. PNAS. 109(38), 15283–15288.","ieee":"J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, and P. Schwille, “Geometry sensing by self-organized protein patterns,” <i>PNAS</i>, vol. 109, no. 38. National Academy of Sciences, pp. 15283–15288, 2012.","chicago":"Schweizer, Jakob, Martin Loose, Mike Bonny, Karsten Kruse, Ingolf Mönch, and Petra Schwille. “Geometry Sensing by Self-Organized Protein Patterns.” <i>PNAS</i>. National Academy of Sciences, 2012. <a href=\"https://doi.org/10.1073/pnas.1206953109\">https://doi.org/10.1073/pnas.1206953109</a>.","short":"J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, P. Schwille, PNAS 109 (2012) 15283–15288.","mla":"Schweizer, Jakob, et al. “Geometry Sensing by Self-Organized Protein Patterns.” <i>PNAS</i>, vol. 109, no. 38, National Academy of Sciences, 2012, pp. 15283–88, doi:<a href=\"https://doi.org/10.1073/pnas.1206953109\">10.1073/pnas.1206953109</a>."},"date_created":"2018-12-11T11:55:04Z","extern":1,"year":"2012","volume":109,"type":"journal_article","quality_controlled":0,"title":"Geometry sensing by self-organized protein patterns","doi":"10.1073/pnas.1206953109","publisher":"National Academy of Sciences","date_updated":"2021-01-12T06:54:31Z","publication_status":"published","day":"18"},{"department":[{"_id":"KrPi"}],"quality_controlled":"1","project":[{"call_identifier":"FP7","grant_number":"259668","name":"Provable Security for Physical Cryptography","_id":"258C570E-B435-11E9-9278-68D0E5697425"}],"publication_status":"published","publisher":"Springer","main_file_link":[{"url":"http://www.iacr.org/archive/ches2012/74280211/74280211.pdf","open_access":"1"}],"type":"conference","volume":7428,"oa_version":"Preprint","scopus_import":1,"alternative_title":["LNCS"],"date_created":"2018-12-11T11:55:25Z","abstract":[{"text":"Leakage resilient cryptography attempts to incorporate side-channel leakage into the black-box security model and designs cryptographic schemes that are provably secure within it. Informally, a scheme is leakage-resilient if it remains secure even if an adversary learns a bounded amount of arbitrary information about the schemes internal state. Unfortunately, most leakage resilient schemes are unnecessarily complicated in order to achieve strong provable security guarantees. As advocated by Yu et al. [CCS’10], this mostly is an artefact of the security proof and in practice much simpler construction may already suffice to protect against realistic side-channel attacks. In this paper, we show that indeed for simpler constructions leakage-resilience can be obtained when we aim for relaxed security notions where the leakage-functions and/or the inputs to the primitive are chosen non-adaptively. For example, we show that a three round Feistel network instantiated with a leakage resilient PRF yields a leakage resilient PRP if the inputs are chosen non-adaptively (This complements the result of Dodis and Pietrzak [CRYPTO’10] who show that if a adaptive queries are allowed, a superlogarithmic number of rounds is necessary.) We also show that a minor variation of the classical GGM construction gives a leakage resilient PRF if both, the leakage-function and the inputs, are chosen non-adaptively.","lang":"eng"}],"publist_id":"5003","publication":" Conference proceedings CHES 2012","date_published":"2012-09-01T00:00:00Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"      7428","doi":"10.1007/978-3-642-33027-8_13","title":"Practical leakage-resilient symmetric cryptography","day":"01","date_updated":"2021-01-12T06:54:58Z","conference":{"start_date":"2012-09-09","end_date":"2012-09-12","location":"Leuven, Belgium","name":"CHES: Cryptographic Hardware and Embedded Systems"},"year":"2012","ec_funded":1,"oa":1,"author":[{"first_name":"Sebastian","last_name":"Faust","full_name":"Faust, Sebastian"},{"id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof Z","last_name":"Pietrzak","orcid":"0000-0002-9139-1654","full_name":"Pietrzak, Krzysztof Z"},{"first_name":"Joachim","last_name":"Schipper","id":"7BE863D4-E9CF-11E9-9EDB-90527418172C","full_name":"Schipper, Joachim"}],"month":"09","citation":{"mla":"Faust, Sebastian, et al. “Practical Leakage-Resilient Symmetric Cryptography.” <i> Conference Proceedings CHES 2012</i>, vol. 7428, Springer, 2012, pp. 213–32, doi:<a href=\"https://doi.org/10.1007/978-3-642-33027-8_13\">10.1007/978-3-642-33027-8_13</a>.","short":"S. Faust, K.Z. Pietrzak, J. Schipper, in:,  Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.","chicago":"Faust, Sebastian, Krzysztof Z Pietrzak, and Joachim Schipper. “Practical Leakage-Resilient Symmetric Cryptography.” In <i> Conference Proceedings CHES 2012</i>, 7428:213–32. Springer, 2012. <a href=\"https://doi.org/10.1007/978-3-642-33027-8_13\">https://doi.org/10.1007/978-3-642-33027-8_13</a>.","ieee":"S. Faust, K. Z. Pietrzak, and J. Schipper, “Practical leakage-resilient symmetric cryptography,” in <i> Conference proceedings CHES 2012</i>, Leuven, Belgium, 2012, vol. 7428, pp. 213–232.","ista":"Faust S, Pietrzak KZ, Schipper J. 2012. Practical leakage-resilient symmetric cryptography.  Conference proceedings CHES 2012. CHES: Cryptographic Hardware and Embedded Systems, LNCS, vol. 7428, 213–232.","apa":"Faust, S., Pietrzak, K. Z., &#38; Schipper, J. (2012). Practical leakage-resilient symmetric cryptography. In <i> Conference proceedings CHES 2012</i> (Vol. 7428, pp. 213–232). Leuven, Belgium: Springer. <a href=\"https://doi.org/10.1007/978-3-642-33027-8_13\">https://doi.org/10.1007/978-3-642-33027-8_13</a>","ama":"Faust S, Pietrzak KZ, Schipper J. Practical leakage-resilient symmetric cryptography. In: <i> Conference Proceedings CHES 2012</i>. Vol 7428. Springer; 2012:213-232. doi:<a href=\"https://doi.org/10.1007/978-3-642-33027-8_13\">10.1007/978-3-642-33027-8_13</a>"},"page":"213 - 232","language":[{"iso":"eng"}],"_id":"2048","acknowledgement":"Sebastian Faust acknowledges support from the Danish National Research Foundation and The National Science Foundation of China (under the grant 61061130540) for the Sino-Danish Center for the Theory of Interactive Computation, within part of this work was performed; and from the CFEM research center, supported by the Danish Strategic Research Council. \r\nSupported by the European Research Council/ERC Starting Grant 259668-PSPC.\r\n"},{"abstract":[{"text":"We propose a new authentication protocol that is provably secure based on a ring variant of the learning parity with noise (LPN) problem. The protocol follows the design principle of the LPN-based protocol from Eurocrypt’11 (Kiltz et al.), and like it, is a two round protocol secure against active attacks. Moreover, our protocol has small communication complexity and a very small footprint which makes it applicable in scenarios that involve low-cost, resource-constrained devices.\r\n\r\nPerformance-wise, our protocol is more efficient than previous LPN-based schemes, such as the many variants of the Hopper-Blum (HB) protocol and the aforementioned protocol from Eurocrypt’11. Our implementation results show that it is even comparable to the standard challenge-and-response protocols based on the AES block-cipher. Our basic protocol is roughly 20 times slower than AES, but with the advantage of having 10 times smaller code size. Furthermore, if a few hundred bytes of non-volatile memory are available to allow the storage of some off-line pre-computations, then the online phase of our protocols is only twice as slow as AES.\r\n","lang":"eng"}],"publist_id":"5002","publication":" Conference proceedings FSE 2012","date_published":"2012-03-01T00:00:00Z","status":"public","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","intvolume":"      7549","oa_version":"Preprint","scopus_import":1,"alternative_title":["LNCS"],"date_created":"2018-12-11T11:55:25Z","main_file_link":[{"url":"http://www.iacr.org/archive/fse2012/75490350/75490350.pdf","open_access":"1"}],"type":"conference","volume":7549,"department":[{"_id":"KrPi"}],"quality_controlled":"1","project":[{"call_identifier":"FP7","grant_number":"259668","name":"Provable Security for Physical Cryptography","_id":"258C570E-B435-11E9-9278-68D0E5697425"}],"publication_status":"published","publisher":"Springer","page":"346 - 365","_id":"2049","language":[{"iso":"eng"}],"acknowledgement":"Supported by the European Research Council / ERC Starting Grant (259668- PSPC)\r\nWe would like to thank the anonymous referees of this confer- ence and those of the ECRYPT Workshop on Lightweight Cryptography for very useful comments, and in particular for the suggestion that the scheme is somewhat vulnerable to a man-in-the-middle attack whenever an adversary observes two reader challenges that are the same. We hope that the attack we described in Appendix A corresponds to what the reviewer had in mind. We also thank Tanja Lange for pointing us to the pa- per of [Kir11] and for discussions of some of her recent work. ","author":[{"full_name":"Heyse, Stefan","first_name":"Stefan","last_name":"Heyse"},{"full_name":"Kiltz, Eike","first_name":"Eike","last_name":"Kiltz"},{"full_name":"Lyubashevsky, Vadim","last_name":"Lyubashevsky","first_name":"Vadim"},{"first_name":"Christof","last_name":"Paar","full_name":"Paar, Christof"},{"full_name":"Pietrzak, Krzysztof Z","orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof Z","last_name":"Pietrzak"}],"month":"03","citation":{"mla":"Heyse, Stefan, et al. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” <i> Conference Proceedings FSE 2012</i>, vol. 7549, Springer, 2012, pp. 346–65, doi:<a href=\"https://doi.org/10.1007/978-3-642-34047-5_20\">10.1007/978-3-642-34047-5_20</a>.","short":"S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:,  Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.","chicago":"Heyse, Stefan, Eike Kiltz, Vadim Lyubashevsky, Christof Paar, and Krzysztof Z Pietrzak. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” In <i> Conference Proceedings FSE 2012</i>, 7549:346–65. Springer, 2012. <a href=\"https://doi.org/10.1007/978-3-642-34047-5_20\">https://doi.org/10.1007/978-3-642-34047-5_20</a>.","ieee":"S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, and K. Z. Pietrzak, “Lapin: An efficient authentication protocol based on ring-LPN,” in <i> Conference proceedings FSE 2012</i>, Washington, DC, USA, 2012, vol. 7549, pp. 346–365.","ista":"Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. 2012. Lapin: An efficient authentication protocol based on ring-LPN.  Conference proceedings FSE 2012. FSE: Fast Software Encryption, LNCS, vol. 7549, 346–365.","apa":"Heyse, S., Kiltz, E., Lyubashevsky, V., Paar, C., &#38; Pietrzak, K. Z. (2012). Lapin: An efficient authentication protocol based on ring-LPN. In <i> Conference proceedings FSE 2012</i> (Vol. 7549, pp. 346–365). Washington, DC, USA: Springer. <a href=\"https://doi.org/10.1007/978-3-642-34047-5_20\">https://doi.org/10.1007/978-3-642-34047-5_20</a>","ama":"Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. Lapin: An efficient authentication protocol based on ring-LPN. In: <i> Conference Proceedings FSE 2012</i>. Vol 7549. Springer; 2012:346-365. doi:<a href=\"https://doi.org/10.1007/978-3-642-34047-5_20\">10.1007/978-3-642-34047-5_20</a>"},"conference":{"location":"Washington, DC, USA","name":"FSE: Fast Software Encryption","start_date":"2012-03-19","end_date":"2012-03-21"},"year":"2012","ec_funded":1,"oa":1,"doi":"10.1007/978-3-642-34047-5_20","title":"Lapin: An efficient authentication protocol based on ring-LPN","day":"01","date_updated":"2021-01-12T06:54:58Z"},{"author":[{"full_name":"Chovnik, Olga","first_name":"Olga","last_name":"Chovnik"},{"first_name":"Renata","last_name":"Balgley","full_name":"Balgley, Renata"},{"last_name":"Goldman","first_name":"Joel R.","full_name":"Goldman, Joel R."},{"full_name":"Klajn, Rafal","last_name":"Klajn","first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"month":"11","article_type":"original","keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"citation":{"ama":"Chovnik O, Balgley R, Goldman JR, Klajn R. Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets. <i>Journal of the American Chemical Society</i>. 2012;134(48):19564-19567. doi:<a href=\"https://doi.org/10.1021/ja309633v\">10.1021/ja309633v</a>","ista":"Chovnik O, Balgley R, Goldman JR, Klajn R. 2012. Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets. Journal of the American Chemical Society. 134(48), 19564–19567.","apa":"Chovnik, O., Balgley, R., Goldman, J. R., &#38; Klajn, R. (2012). Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja309633v\">https://doi.org/10.1021/ja309633v</a>","chicago":"Chovnik, Olga, Renata Balgley, Joel R. Goldman, and Rafal Klajn. “Dynamically Self-Assembling Carriers Enable Guiding of Diamagnetic Particles by Weak Magnets.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2012. <a href=\"https://doi.org/10.1021/ja309633v\">https://doi.org/10.1021/ja309633v</a>.","ieee":"O. Chovnik, R. Balgley, J. R. Goldman, and R. Klajn, “Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets,” <i>Journal of the American Chemical Society</i>, vol. 134, no. 48. American Chemical Society, pp. 19564–19567, 2012.","short":"O. Chovnik, R. Balgley, J.R. Goldman, R. Klajn, Journal of the American Chemical Society 134 (2012) 19564–19567.","mla":"Chovnik, Olga, et al. “Dynamically Self-Assembling Carriers Enable Guiding of Diamagnetic Particles by Weak Magnets.” <i>Journal of the American Chemical Society</i>, vol. 134, no. 48, American Chemical Society, 2012, pp. 19564–67, doi:<a href=\"https://doi.org/10.1021/ja309633v\">10.1021/ja309633v</a>."},"page":"19564-19567","issue":"48","language":[{"iso":"eng"}],"_id":"13407","doi":"10.1021/ja309633v","title":"Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets","external_id":{"pmid":["23181449"]},"day":"26","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"date_updated":"2023-08-08T07:51:10Z","year":"2012","article_processing_charge":"No","oa_version":"Published Version","scopus_import":"1","extern":"1","date_created":"2023-08-01T09:47:42Z","abstract":[{"lang":"eng","text":"We show that diamagnetic particles can be remotely manipulated by a magnet by the reversible adsorption of dual-responsive, light-switchable/superparamagnetic nanoparticles down to their surface. Adsorption occurs upon exposure to UV light, and can be reversed thermally or by ambient light. The dynamic self-assembly of thin films of the dual-responsive nanoparticles induces attractive interactions between diamagnetic particles. We demonstrate that catalytic amounts of the dual-responsive nanoparticles are sufficient to magnetically guide and deliver the diamagnetic particles to desired locations, where they can then be released by disassembling the dynamic layers of superparamagnetic nanoparticles with visible light."}],"publication":"Journal of the American Chemical Society","date_published":"2012-11-26T00:00:00Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"       134","quality_controlled":"1","pmid":1,"publication_status":"published","publisher":"American Chemical Society","type":"journal_article","volume":134}]