[{"publication_status":"published","year":"2013","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3604726/","open_access":"1"}],"_id":"595","intvolume":"        32","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"771 - 772","volume":32,"language":[{"iso":"eng"}],"month":"03","citation":{"apa":"Bernecky, C., &#38; Cramer, P. (2013). Struggling to let go: A non-coding RNA directs its own extension and destruction. <i>EMBO Journal</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1038/emboj.2013.36\">https://doi.org/10.1038/emboj.2013.36</a>","chicago":"Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding RNA Directs Its Own Extension and Destruction.” <i>EMBO Journal</i>. Wiley-Blackwell, 2013. <a href=\"https://doi.org/10.1038/emboj.2013.36\">https://doi.org/10.1038/emboj.2013.36</a>.","ieee":"C. Bernecky and P. Cramer, “Struggling to let go: A non-coding RNA directs its own extension and destruction,” <i>EMBO Journal</i>, vol. 32, no. 6. Wiley-Blackwell, pp. 771–772, 2013.","mla":"Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding RNA Directs Its Own Extension and Destruction.” <i>EMBO Journal</i>, vol. 32, no. 6, Wiley-Blackwell, 2013, pp. 771–72, doi:<a href=\"https://doi.org/10.1038/emboj.2013.36\">10.1038/emboj.2013.36</a>.","short":"C. Bernecky, P. Cramer, EMBO Journal 32 (2013) 771–772.","ista":"Bernecky C, Cramer P. 2013. Struggling to let go: A non-coding RNA directs its own extension and destruction. EMBO Journal. 32(6), 771–772.","ama":"Bernecky C, Cramer P. Struggling to let go: A non-coding RNA directs its own extension and destruction. <i>EMBO Journal</i>. 2013;32(6):771-772. doi:<a href=\"https://doi.org/10.1038/emboj.2013.36\">10.1038/emboj.2013.36</a>"},"day":"20","issue":"6","oa":1,"status":"public","publist_id":"7207","oa_version":"None","date_created":"2018-12-11T11:47:23Z","publisher":"Wiley-Blackwell","title":"Struggling to let go: A non-coding RNA directs its own extension and destruction","publication":"EMBO Journal","extern":"1","doi":"10.1038/emboj.2013.36","date_updated":"2021-01-12T08:05:20Z","article_processing_charge":"No","author":[{"first_name":"Carrie A","orcid":"0000-0003-0893-7036","last_name":"Bernecky","full_name":"Bernecky, Carrie A","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cramer, Patrick","last_name":"Cramer","first_name":"Patrick"}],"date_published":"2013-03-20T00:00:00Z"},{"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"e1004011","file_date_updated":"2020-07-14T12:47:20Z","quality_controlled":"1","date_updated":"2021-01-12T08:06:15Z","doi":"10.1371/journal.pgen.1004011","author":[{"first_name":"Eiji","last_name":"Kodama-Namba","full_name":"Kodama-Namba, Eiji"},{"first_name":"Lorenz A.","last_name":"Fenk","full_name":"Fenk, Lorenz A."},{"first_name":"Andrew J.","last_name":"Bretscher","full_name":"Bretscher, Andrew J."},{"full_name":"Gross, Einav","first_name":"Einav","last_name":"Gross"},{"full_name":"Busch, K. Emanuel","first_name":"K. Emanuel","last_name":"Busch"},{"orcid":"0000-0001-8347-0443","last_name":"de Bono","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario"}],"date_published":"2013-12-19T00:00:00Z","publication_status":"published","file":[{"file_id":"6129","date_updated":"2020-07-14T12:47:20Z","file_name":"2013_PLOS_Kodama-Namba.PDF","checksum":"299b6321be79931c7c17c5db6e69c711","file_size":4499039,"access_level":"open_access","creator":"kschuh","relation":"main_file","date_created":"2019-03-19T15:14:51Z","content_type":"application/pdf"}],"intvolume":"         9","language":[{"iso":"eng"}],"month":"12","day":"19","ddc":["570"],"pmid":1,"oa_version":"Published Version","date_created":"2019-03-19T14:58:51Z","publisher":"Public Library of Science (PLoS)","title":"Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans","publication":"PLoS Genetics","extern":"1","abstract":[{"lang":"eng","text":"Different interoceptive systems must be integrated to ensure that multiple homeostatic insults evoke appropriate behavioral and physiological responses. Little is known about how this is achieved. Using C. elegans, we dissect cross-modulation between systems that monitor temperature, O2 and CO2. CO2 is less aversive to animals acclimated to 15°C than those grown at 22°C. This difference requires the AFD neurons, which respond to both temperature and CO2 changes. CO2 evokes distinct AFD Ca2+ responses in animals acclimated at 15°C or 22°C. Mutants defective in synaptic transmission can reprogram AFD CO2 responses according to temperature experience, suggesting reprogramming occurs cell autonomously. AFD is exquisitely sensitive to CO2. Surprisingly, gradients of 0.01% CO2/second evoke very different Ca2+ responses from gradients of 0.04% CO2/second. Ambient O2 provides further contextual modulation of CO2 avoidance. At 21% O2 tonic signalling from the O2-sensing neuron URX inhibits CO2 avoidance. This inhibition can be graded according to O2 levels. In a natural wild isolate, a switch from 21% to 19% O2 is sufficient to convert CO2 from a neutral to an aversive cue. This sharp tuning is conferred partly by the neuroglobin GLB-5. The modulatory effects of O2 on CO2 avoidance involve the RIA interneurons, which are post-synaptic to URX and exhibit CO2-evoked Ca2+ responses. Ambient O2 and acclimation temperature act combinatorially to modulate CO2 responsiveness. Our work highlights the integrated architecture of homeostatic responses in C. elegans."}],"year":"2013","has_accepted_license":"1","_id":"6128","type":"journal_article","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","volume":9,"publication_identifier":{"issn":["1553-7404"]},"citation":{"ieee":"E. Kodama-Namba, L. A. Fenk, A. J. Bretscher, E. Gross, K. E. Busch, and M. de Bono, “Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans,” <i>PLoS Genetics</i>, vol. 9, no. 12. Public Library of Science (PLoS), 2013.","chicago":"Kodama-Namba, Eiji, Lorenz A. Fenk, Andrew J. Bretscher, Einav Gross, K. Emanuel Busch, and Mario de Bono. “Cross-Modulation of Homeostatic Responses to Temperature, Oxygen and Carbon Dioxide in C. Elegans.” <i>PLoS Genetics</i>. Public Library of Science (PLoS), 2013. <a href=\"https://doi.org/10.1371/journal.pgen.1004011\">https://doi.org/10.1371/journal.pgen.1004011</a>.","apa":"Kodama-Namba, E., Fenk, L. A., Bretscher, A. J., Gross, E., Busch, K. E., &#38; de Bono, M. (2013). Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans. <i>PLoS Genetics</i>. Public Library of Science (PLoS). <a href=\"https://doi.org/10.1371/journal.pgen.1004011\">https://doi.org/10.1371/journal.pgen.1004011</a>","ama":"Kodama-Namba E, Fenk LA, Bretscher AJ, Gross E, Busch KE, de Bono M. Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans. <i>PLoS Genetics</i>. 2013;9(12). doi:<a href=\"https://doi.org/10.1371/journal.pgen.1004011\">10.1371/journal.pgen.1004011</a>","short":"E. Kodama-Namba, L.A. Fenk, A.J. Bretscher, E. Gross, K.E. Busch, M. de Bono, PLoS Genetics 9 (2013).","ista":"Kodama-Namba E, Fenk LA, Bretscher AJ, Gross E, Busch KE, de Bono M. 2013. Cross-modulation of homeostatic responses to temperature, oxygen and carbon dioxide in C. elegans. PLoS Genetics. 9(12), e1004011.","mla":"Kodama-Namba, Eiji, et al. “Cross-Modulation of Homeostatic Responses to Temperature, Oxygen and Carbon Dioxide in C. Elegans.” <i>PLoS Genetics</i>, vol. 9, no. 12, e1004011, Public Library of Science (PLoS), 2013, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1004011\">10.1371/journal.pgen.1004011</a>."},"external_id":{"pmid":["24385919"]},"issue":"12","status":"public","oa":1},{"intvolume":"        41","publication_status":"published","file":[{"file_name":"2013_OUP_Chen.pdf","checksum":"0f1f127cefd043cb922b292e1cd16f02","file_size":340225,"date_updated":"2020-07-14T12:47:20Z","file_id":"6131","date_created":"2019-03-19T15:25:42Z","content_type":"application/pdf","creator":"kschuh","access_level":"open_access","relation":"main_file"}],"pmid":1,"day":"01","ddc":["570"],"language":[{"iso":"eng"}],"month":"11","file_date_updated":"2020-07-14T12:47:20Z","article_number":"e193","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2013-11-01T00:00:00Z","author":[{"last_name":"Chen","first_name":"Changchun","full_name":"Chen, Changchun"},{"last_name":"Fenk","first_name":"Lorenz A.","full_name":"Fenk, Lorenz A."},{"last_name":"de Bono","orcid":"0000-0001-8347-0443","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario"}],"date_updated":"2021-01-12T08:06:16Z","doi":"10.1093/nar/gkt805","quality_controlled":"1","volume":41,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"6130","has_accepted_license":"1","year":"2013","status":"public","oa":1,"external_id":{"pmid":["24013562"]},"issue":"20","citation":{"ama":"Chen C, Fenk LA, de Bono M. Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination. <i>Nucleic Acids Research</i>. 2013;41(20). doi:<a href=\"https://doi.org/10.1093/nar/gkt805\">10.1093/nar/gkt805</a>","mla":"Chen, Changchun, et al. “Efficient Genome Editing in Caenorhabditis Elegans by CRISPR-Targeted Homologous Recombination.” <i>Nucleic Acids Research</i>, vol. 41, no. 20, e193, Oxford University Press, 2013, doi:<a href=\"https://doi.org/10.1093/nar/gkt805\">10.1093/nar/gkt805</a>.","short":"C. Chen, L.A. Fenk, M. de Bono, Nucleic Acids Research 41 (2013).","ista":"Chen C, Fenk LA, de Bono M. 2013. Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination. Nucleic Acids Research. 41(20), e193.","chicago":"Chen, Changchun, Lorenz A. Fenk, and Mario de Bono. “Efficient Genome Editing in Caenorhabditis Elegans by CRISPR-Targeted Homologous Recombination.” <i>Nucleic Acids Research</i>. Oxford University Press, 2013. <a href=\"https://doi.org/10.1093/nar/gkt805\">https://doi.org/10.1093/nar/gkt805</a>.","ieee":"C. Chen, L. A. Fenk, and M. de Bono, “Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination,” <i>Nucleic Acids Research</i>, vol. 41, no. 20. Oxford University Press, 2013.","apa":"Chen, C., Fenk, L. A., &#38; de Bono, M. (2013). Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination. <i>Nucleic Acids Research</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/nar/gkt805\">https://doi.org/10.1093/nar/gkt805</a>"},"publication_identifier":{"issn":["1362-4962","0305-1048"]},"title":"Efficient genome editing in Caenorhabditis elegans by CRISPR-targeted homologous recombination","publication":"Nucleic Acids Research","publisher":"Oxford University Press","oa_version":"Published Version","date_created":"2019-03-19T15:17:40Z","abstract":[{"text":"Cas9 is an RNA-guided double-stranded DNA nuclease that participates in clustered regularly interspaced short palindromic repeats (CRISPR)-mediated adaptive immunity in prokaryotes. CRISPR–Cas9 has recently been used to generate insertion and deletion mutations in Caenorhabditis elegans, but not to create tailored changes (knock-ins). We show that the CRISPR–CRISPR-associated (Cas) system can be adapted for efficient and precise editing of the C. elegans genome. The targeted double-strand breaks generated by CRISPR are substrates for transgene-instructed gene conversion. This allows customized changes in the C. elegans genome by homologous recombination: sequences contained in the repair template (the transgene) are copied by gene conversion into the genome. The possibility to edit the C. elegans genome at selected locations will facilitate the systematic study of gene function in this widely used model organism.","lang":"eng"}],"extern":"1"},{"_id":"6132","year":"2013","publication_status":"published","page":"61-78","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","type":"book_chapter","citation":{"ama":"de Bono M, Schafer WR, Gottschalk A. Optogenetic actuation, inhibition, modulation and readout for neuronal networks generating behavior in the nematode Caenorhabditis elegans. In: Hegemann P, Sigrist S, eds. <i>Optogenetics</i>. Walter de Gruyter; 2013:61-78.","short":"M. de Bono, W.R. Schafer, A. Gottschalk, in:, P. Hegemann, S. Sigrist (Eds.), Optogenetics, Walter de Gruyter, 2013, pp. 61–78.","mla":"de Bono, Mario, et al. “Optogenetic Actuation, Inhibition, Modulation and Readout for Neuronal Networks Generating Behavior in the Nematode Caenorhabditis Elegans.” <i>Optogenetics</i>, edited by Peter Hegemann and Stephan Sigrist, Walter de Gruyter, 2013, pp. 61–78.","ista":"de Bono M, Schafer WR, Gottschalk A. 2013.Optogenetic actuation, inhibition, modulation and readout for neuronal networks generating behavior in the nematode Caenorhabditis elegans. In: Optogenetics. , 61–78.","ieee":"M. de Bono, W. R. Schafer, and A. Gottschalk, “Optogenetic actuation, inhibition, modulation and readout for neuronal networks generating behavior in the nematode Caenorhabditis elegans,” in <i>Optogenetics</i>, P. Hegemann and S. Sigrist, Eds. Walter de Gruyter, 2013, pp. 61–78.","chicago":"Bono, Mario de, W.R. Schafer, and A. Gottschalk. “Optogenetic Actuation, Inhibition, Modulation and Readout for Neuronal Networks Generating Behavior in the Nematode Caenorhabditis Elegans.” In <i>Optogenetics</i>, edited by Peter Hegemann and Stephan Sigrist, 61–78. Walter de Gruyter, 2013.","apa":"de Bono, M., Schafer, W. R., &#38; Gottschalk, A. (2013). Optogenetic actuation, inhibition, modulation and readout for neuronal networks generating behavior in the nematode Caenorhabditis elegans. In P. Hegemann &#38; S. Sigrist (Eds.), <i>Optogenetics</i> (pp. 61–78). Walter de Gruyter."},"month":"08","publication_identifier":{"isbn":["9783110270723; 9783110270716"]},"language":[{"iso":"eng"}],"status":"public","day":"28","date_created":"2019-03-20T13:54:05Z","oa_version":"None","publication":"Optogenetics","title":"Optogenetic actuation, inhibition, modulation and readout for neuronal networks generating behavior in the nematode Caenorhabditis elegans","publisher":"Walter de Gruyter","extern":"1","quality_controlled":"1","author":[{"last_name":"de Bono","orcid":"0000-0001-8347-0443","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario"},{"last_name":"Schafer","first_name":"W.R.","full_name":"Schafer, W.R."},{"last_name":"Gottschalk","first_name":"A.","full_name":"Gottschalk, A."}],"date_published":"2013-08-28T00:00:00Z","editor":[{"last_name":"Hegemann","first_name":"Peter","full_name":"Hegemann, Peter"},{"full_name":"Sigrist, Stephan","last_name":"Sigrist","first_name":"Stephan"}],"date_updated":"2021-01-12T08:06:16Z"},{"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":110,"page":"E3301-E3310","has_accepted_license":"1","year":"2013","_id":"6133","issue":"35","external_id":{"pmid":["23940325"]},"oa":1,"status":"public","publication_identifier":{"issn":["0027-8424","1091-6490"]},"citation":{"apa":"Couto, A., Oda, S., Nikolaev, V. O., Soltesz, Z., &#38; de Bono, M. (2013). In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor. <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1217428110\">https://doi.org/10.1073/pnas.1217428110</a>","ieee":"A. Couto, S. Oda, V. O. Nikolaev, Z. Soltesz, and M. de Bono, “In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor,” <i>Proceedings of the National Academy of Sciences</i>, vol. 110, no. 35. Proceedings of the National Academy of Sciences, pp. E3301–E3310, 2013.","chicago":"Couto, A., S. Oda, V. O. Nikolaev, Z. Soltesz, and Mario de Bono. “In Vivo Genetic Dissection of O2-Evoked CGMP Dynamics in a Caenorhabditis Elegans Gas Sensor.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2013. <a href=\"https://doi.org/10.1073/pnas.1217428110\">https://doi.org/10.1073/pnas.1217428110</a>.","ista":"Couto A, Oda S, Nikolaev VO, Soltesz Z, de Bono M. 2013. In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor. Proceedings of the National Academy of Sciences. 110(35), E3301–E3310.","short":"A. Couto, S. Oda, V.O. Nikolaev, Z. Soltesz, M. de Bono, Proceedings of the National Academy of Sciences 110 (2013) E3301–E3310.","mla":"Couto, A., et al. “In Vivo Genetic Dissection of O2-Evoked CGMP Dynamics in a Caenorhabditis Elegans Gas Sensor.” <i>Proceedings of the National Academy of Sciences</i>, vol. 110, no. 35, Proceedings of the National Academy of Sciences, 2013, pp. E3301–10, doi:<a href=\"https://doi.org/10.1073/pnas.1217428110\">10.1073/pnas.1217428110</a>.","ama":"Couto A, Oda S, Nikolaev VO, Soltesz Z, de Bono M. In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor. <i>Proceedings of the National Academy of Sciences</i>. 2013;110(35):E3301-E3310. doi:<a href=\"https://doi.org/10.1073/pnas.1217428110\">10.1073/pnas.1217428110</a>"},"publisher":"Proceedings of the National Academy of Sciences","publication":"Proceedings of the National Academy of Sciences","title":"In vivo genetic dissection of O2-evoked cGMP dynamics in a Caenorhabditis elegans gas sensor","date_created":"2019-03-20T14:05:06Z","oa_version":"Published Version","extern":"1","abstract":[{"lang":"eng","text":"cGMP signaling is widespread in the nervous system. However, it has proved difficult to visualize and genetically probe endogenously evoked cGMP dynamics in neurons in vivo. Here, we combine cGMP and Ca2+ biosensors to image and dissect a cGMP signaling network in a Caenorhabditis elegans oxygen-sensing neuron. We show that a rise in O2 can evoke a tonic increase in cGMP that requires an atypical O2-binding soluble guanylate cyclase and that is sustained until oxygen levels fall. Increased cGMP leads to a sustained Ca2+ response in the neuron that depends on cGMP-gated ion channels. Elevated levels of cGMP and Ca2+ stimulate competing negative feedback loops that shape cGMP dynamics. Ca2+-dependent negative feedback loops, including activation of phosphodiesterase-1 (PDE-1), dampen the rise of cGMP. A different negative feedback loop, mediated by phosphodiesterase-2 (PDE-2) and stimulated by cGMP-dependent kinase (PKG), unexpectedly promotes cGMP accumulation following a rise in O2, apparently by keeping in check gating of cGMP channels and limiting activation of Ca2+-dependent negative feedback loops. Simultaneous imaging of Ca2+ and cGMP suggests that cGMP levels can rise close to cGMP channels while falling elsewhere. O2-evoked cGMP and Ca2+ responses are highly reproducible when the same neuron in an individual animal is stimulated repeatedly, suggesting that cGMP transduction has high intrinsic reliability. However, responses vary substantially across individuals, despite animals being genetically identical and similarly reared. This variability may reflect stochastic differences in expression of cGMP signaling components. Our work provides in vivo insights into the architecture of neuronal cGMP signaling."}],"file":[{"file_id":"6134","date_updated":"2020-07-14T12:47:20Z","checksum":"3ee28a694f74a49f0d098970ae391a91","file_name":"2013_PNAS_Couto.pdf","file_size":2198763,"creator":"kschuh","access_level":"open_access","relation":"main_file","date_created":"2019-03-20T14:07:53Z","content_type":"application/pdf"}],"publication_status":"published","intvolume":"       110","ddc":["570"],"day":"27","pmid":1,"month":"08","language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:47:20Z","doi":"10.1073/pnas.1217428110","date_updated":"2021-01-12T08:06:16Z","date_published":"2013-08-27T00:00:00Z","author":[{"last_name":"Couto","first_name":"A.","full_name":"Couto, A."},{"first_name":"S.","last_name":"Oda","full_name":"Oda, S."},{"full_name":"Nikolaev, V. O.","first_name":"V. O.","last_name":"Nikolaev"},{"last_name":"Soltesz","first_name":"Z.","full_name":"Soltesz, Z."},{"last_name":"de Bono","orcid":"0000-0001-8347-0443","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario"}],"quality_controlled":"1"},{"citation":{"mla":"Rodriguez, Miriam, et al. “Worms under Stress: C. Elegans Stress Response and Its Relevance to Complex Human Disease and Aging.” <i>Trends in Genetics</i>, vol. 29, no. 6, Elsevier, 2013, pp. 367–74, doi:<a href=\"https://doi.org/10.1016/j.tig.2013.01.010\">10.1016/j.tig.2013.01.010</a>.","ista":"Rodriguez M, Snoek LB, de Bono M, Kammenga JE. 2013. Worms under stress: C. elegans stress response and its relevance to complex human disease and aging. Trends in Genetics. 29(6), 367–374.","short":"M. Rodriguez, L.B. Snoek, M. de Bono, J.E. Kammenga, Trends in Genetics 29 (2013) 367–374.","ama":"Rodriguez M, Snoek LB, de Bono M, Kammenga JE. Worms under stress: C. elegans stress response and its relevance to complex human disease and aging. <i>Trends in Genetics</i>. 2013;29(6):367-374. doi:<a href=\"https://doi.org/10.1016/j.tig.2013.01.010\">10.1016/j.tig.2013.01.010</a>","apa":"Rodriguez, M., Snoek, L. B., de Bono, M., &#38; Kammenga, J. E. (2013). Worms under stress: C. elegans stress response and its relevance to complex human disease and aging. <i>Trends in Genetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tig.2013.01.010\">https://doi.org/10.1016/j.tig.2013.01.010</a>","ieee":"M. Rodriguez, L. B. Snoek, M. de Bono, and J. E. Kammenga, “Worms under stress: C. elegans stress response and its relevance to complex human disease and aging,” <i>Trends in Genetics</i>, vol. 29, no. 6. Elsevier, pp. 367–374, 2013.","chicago":"Rodriguez, Miriam, L. Basten Snoek, Mario de Bono, and Jan E. Kammenga. “Worms under Stress: C. Elegans Stress Response and Its Relevance to Complex Human Disease and Aging.” <i>Trends in Genetics</i>. Elsevier, 2013. <a href=\"https://doi.org/10.1016/j.tig.2013.01.010\">https://doi.org/10.1016/j.tig.2013.01.010</a>."},"month":"06","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0168-9525"]},"status":"public","issue":"6","day":"01","_id":"6135","intvolume":"        29","year":"2013","publication_status":"published","volume":29,"page":"367-374","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","type":"journal_article","abstract":[{"lang":"eng","text":"Many organisms have stress response pathways, components of which share homology with players in complex human disease pathways. Research on stress response in the nematode worm Caenorhabditis elegans has provided detailed insights into the genetic and molecular mechanisms underlying complex human diseases. In this review we focus on four different types of environmental stress responses – heat shock, oxidative stress, hypoxia, and osmotic stress – and on how these can be used to study the genetics of complex human diseases. All four types of responses involve the genetic machineries that underlie a number of complex human diseases such as cancer and neurodegenerative diseases, including Alzheimer's and Parkinson's. We highlight the types of stress response experiments required to detect the genes and pathways underlying human disease and suggest that studying stress biology in worms can be translated to understanding human disease and provide potential targets for drug discovery."}],"quality_controlled":"1","extern":"1","date_published":"2013-06-01T00:00:00Z","author":[{"full_name":"Rodriguez, Miriam","first_name":"Miriam","last_name":"Rodriguez"},{"full_name":"Snoek, L. Basten","last_name":"Snoek","first_name":"L. Basten"},{"id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario","last_name":"de Bono","orcid":"0000-0001-8347-0443","first_name":"Mario"},{"full_name":"Kammenga, Jan E.","first_name":"Jan E.","last_name":"Kammenga"}],"doi":"10.1016/j.tig.2013.01.010","date_updated":"2021-01-12T08:06:17Z","date_created":"2019-03-20T14:17:42Z","oa_version":"None","publication":"Trends in Genetics","title":"Worms under stress: C. elegans stress response and its relevance to complex human disease and aging","publisher":"Elsevier"},{"month":"05","publication_identifier":{"issn":["1932-7447","1932-7455"]},"language":[{"iso":"eng"}],"citation":{"mla":"Lin, Tze-Chia, et al. “Molecular Origins of the High-Performance Nonlinear Optical Susceptibility in a Phenolic Polyene Chromophore: Electron Density Distributions, Hydrogen Bonding, and Ab Initio Calculations.” <i>The Journal of Physical Chemistry C</i>, vol. 117, no. 18, American Chemical Society (ACS), 2013, pp. 9416–30, doi:<a href=\"https://doi.org/10.1021/jp400648q\">10.1021/jp400648q</a>.","ista":"Lin T-C, Cole JM, Higginbotham AP, Edwards AJ, Piltz RO, Pérez-Moreno J, Seo J-Y, Lee S-C, Clays K, Kwon O-P. 2013. Molecular origins of the high-performance nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density distributions, hydrogen bonding, and ab initio calculations. The Journal of Physical Chemistry C. 117(18), 9416–9430.","short":"T.-C. Lin, J.M. Cole, A.P. Higginbotham, A.J. Edwards, R.O. Piltz, J. Pérez-Moreno, J.-Y. Seo, S.-C. Lee, K. Clays, O.-P. Kwon, The Journal of Physical Chemistry C 117 (2013) 9416–9430.","ama":"Lin T-C, Cole JM, Higginbotham AP, et al. Molecular origins of the high-performance nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density distributions, hydrogen bonding, and ab initio calculations. <i>The Journal of Physical Chemistry C</i>. 2013;117(18):9416-9430. doi:<a href=\"https://doi.org/10.1021/jp400648q\">10.1021/jp400648q</a>","apa":"Lin, T.-C., Cole, J. M., Higginbotham, A. P., Edwards, A. J., Piltz, R. O., Pérez-Moreno, J., … Kwon, O.-P. (2013). Molecular origins of the high-performance nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density distributions, hydrogen bonding, and ab initio calculations. <i>The Journal of Physical Chemistry C</i>. American Chemical Society (ACS). <a href=\"https://doi.org/10.1021/jp400648q\">https://doi.org/10.1021/jp400648q</a>","ieee":"T.-C. Lin <i>et al.</i>, “Molecular origins of the high-performance nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density distributions, hydrogen bonding, and ab initio calculations,” <i>The Journal of Physical Chemistry C</i>, vol. 117, no. 18. American Chemical Society (ACS), pp. 9416–9430, 2013.","chicago":"Lin, Tze-Chia, Jacqueline M. Cole, Andrew P Higginbotham, Alison J. Edwards, Ross O. Piltz, Javier Pérez-Moreno, Ji-Youn Seo, Seung-Chul Lee, Koen Clays, and O-Pil Kwon. “Molecular Origins of the High-Performance Nonlinear Optical Susceptibility in a Phenolic Polyene Chromophore: Electron Density Distributions, Hydrogen Bonding, and Ab Initio Calculations.” <i>The Journal of Physical Chemistry C</i>. American Chemical Society (ACS), 2013. <a href=\"https://doi.org/10.1021/jp400648q\">https://doi.org/10.1021/jp400648q</a>."},"issue":"18","day":"09","status":"public","year":"2013","publication_status":"published","_id":"6370","intvolume":"       117","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":117,"page":"9416-9430","quality_controlled":"1","extern":"1","abstract":[{"text":"The molecular and supramolecular origins of the superior nonlinear optical (NLO) properties observed in the organic phenolic triene material, OH1 (2-(3-(4-hydroxystyryl)-5,5-dimethylcyclohex-2-enylidene)malononitrile), are presented. The molecular charge-transfer distribution is topographically mapped, demonstrating that a uniformly delocalized passive electronic medium facilitates the charge-transfer between the phenolic electron donor and the cyano electron acceptors which lie at opposite ends of the molecule. Its ability to act as a “push–pull” π-conjugated molecule is quantified, relative to similar materials, by supporting empirical calculations; these include bond-length alternation and harmonic-oscillator stabilization energy (HOSE) tests. Such tests, together with frontier molecular orbital considerations, reveal that OH1 can exist readily in its aromatic (neutral) or quinoidal (charge-separated) state, thereby overcoming the “nonlinearity-thermal stability trade-off”. The HOSE calculation also reveals a correlation between the quinoidal resonance contribution to the overall structure of OH1 and the UV–vis absorption peak wavelength in the wider family of configurationally locked polyene framework materials. Solid-state tensorial coefficients of the molecular dipole, polarizability, and the first hyperpolarizability for OH1 are derived from the first-, second-, and third-order electronic moments of the experimental charge-density distribution. The overall solid-state molecular dipole moment is compared with those from gas-phase calculations, revealing that crystal field effects are very significant in OH1. The solid-state hyperpolarizability derived from this charge-density study affords good agreement with gas-phase calculations as well as optical measurements based on hyper-Rayleigh scattering (HRS) and electric-field-induced second harmonic (EFISH) generation. This lends support to the further use of charge-density studies to calculate solid-state hyperpolarizability coefficients in other organic NLO materials. Finally, this charge-density study is also employed to provide an advanced classification of hydrogen bonds in OH1, which requires more stringent criteria than those from conventional structure analysis. As a result, only the strongest OH···NC interaction is so classified as a true hydrogen bond. Indeed, it is this electrostatic interaction that influences the molecular charge transfer: the other four, weaker, nonbonded contacts nonetheless affect the crystal packing. Overall, the establishment of these structure–property relationships lays a blueprint for designing further, more NLO efficient, materials in this industrially leading organic family of compounds.","lang":"eng"}],"date_updated":"2021-01-12T08:07:17Z","doi":"10.1021/jp400648q","author":[{"last_name":"Lin","first_name":"Tze-Chia","full_name":"Lin, Tze-Chia"},{"first_name":"Jacqueline M.","last_name":"Cole","full_name":"Cole, Jacqueline M."},{"id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","full_name":"Higginbotham, Andrew P","last_name":"Higginbotham","orcid":"0000-0003-2607-2363","first_name":"Andrew P"},{"full_name":"Edwards, Alison J.","first_name":"Alison J.","last_name":"Edwards"},{"full_name":"Piltz, Ross O.","last_name":"Piltz","first_name":"Ross O."},{"last_name":"Pérez-Moreno","first_name":"Javier","full_name":"Pérez-Moreno, Javier"},{"full_name":"Seo, Ji-Youn","first_name":"Ji-Youn","last_name":"Seo"},{"full_name":"Lee, Seung-Chul","first_name":"Seung-Chul","last_name":"Lee"},{"full_name":"Clays, Koen","first_name":"Koen","last_name":"Clays"},{"first_name":"O-Pil","last_name":"Kwon","full_name":"Kwon, O-Pil"}],"date_published":"2013-05-09T00:00:00Z","date_created":"2019-05-03T09:40:31Z","oa_version":"None","publisher":"American Chemical Society (ACS)","publication":"The Journal of Physical Chemistry C","title":"Molecular origins of the high-performance nonlinear optical susceptibility in a phenolic polyene chromophore: Electron density distributions, hydrogen bonding, and ab initio calculations"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"technical_report","page":"23","year":"2013","file":[{"relation":"main_file","creator":"dernst","access_level":"open_access","content_type":"application/pdf","date_created":"2019-05-13T14:11:39Z","file_id":"6441","date_updated":"2020-07-14T12:47:30Z","file_size":549684,"checksum":"a219ba4eada6cd62befed52262ee15d4","file_name":"2013_TechRep_Henzinger.pdf"}],"has_accepted_license":"1","publication_status":"published","_id":"6440","ddc":["000","005"],"day":"13","status":"public","oa":1,"month":"06","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2664-1690"]},"citation":{"ieee":"T. A. Henzinger, H. Payer, and A. Sezgin, <i>Replacing competition with cooperation to achieve scalable lock-free FIFO queues </i>. IST Austria, 2013.","chicago":"Henzinger, Thomas A, Hannes Payer, and Ali Sezgin. <i>Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria, 2013. <a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>.","apa":"Henzinger, T. A., Payer, H., &#38; Sezgin, A. (2013). <i>Replacing competition with cooperation to achieve scalable lock-free FIFO queues </i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">https://doi.org/10.15479/AT:IST-2013-124-v1-1</a>","ama":"Henzinger TA, Payer H, Sezgin A. <i>Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria; 2013. doi:<a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">10.15479/AT:IST-2013-124-v1-1</a>","ista":"Henzinger TA, Payer H, Sezgin A. 2013. Replacing competition with cooperation to achieve scalable lock-free FIFO queues , IST Austria, 23p.","mla":"Henzinger, Thomas A., et al. <i>Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues </i>. IST Austria, 2013, doi:<a href=\"https://doi.org/10.15479/AT:IST-2013-124-v1-1\">10.15479/AT:IST-2013-124-v1-1</a>.","short":"T.A. Henzinger, H. Payer, A. Sezgin, Replacing Competition with Cooperation to Achieve Scalable Lock-Free FIFO Queues , IST Austria, 2013."},"publisher":"IST Austria","title":"Replacing competition with cooperation to achieve scalable lock-free FIFO queues ","file_date_updated":"2020-07-14T12:47:30Z","department":[{"_id":"ToHe"}],"date_created":"2019-05-13T14:13:27Z","oa_version":"Published Version","date_updated":"2020-07-14T23:06:19Z","doi":"10.15479/AT:IST-2013-124-v1-1","alternative_title":["IST Austria Technical Report"],"pubrep_id":"124","author":[{"last_name":"Henzinger","orcid":"0000−0002−2985−7724","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A"},{"full_name":"Payer, Hannes","first_name":"Hannes","last_name":"Payer"},{"first_name":"Ali","last_name":"Sezgin","full_name":"Sezgin, Ali","id":"4C7638DA-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2013-06-13T00:00:00Z","abstract":[{"text":"In order to guarantee that each method of a data structure updates the logical state exactly once, al-most all non-blocking implementations employ Compare-And-Swap (CAS) based synchronization. For FIFO  queue  implementations  this  translates  into  concurrent  enqueue  or  dequeue  methods competing among themselves to update the same variable, the tail or the head, respectively, leading to high contention and poor scalability. Recent non-blocking queue implementations try to alleviate high contentionby increasing the number of contention points, all the while using CAS-based synchronization. Furthermore, obtaining a wait-free implementation with competition is achieved by additional synchronization which leads to further degradation of performance.In this paper we formalize the notion of competitiveness of a synchronizing statement which can beused as a measure for the scalability of concurrent implementations.  We present a new queue implementation, the Speculative Pairing (SP) queue, which, as we show, decreases competitiveness by using Fetch-And-Increment (FAI) instead of CAS. We prove that the SP queue is linearizable and lock-free.We also show that replacing CAS with FAI leads to wait-freedom for dequeue methods without an adverse effect on performance.  In fact, our experiments suggest that the SP queue can perform and scale better than the state-of-the-art queue implementations.","lang":"eng"}]},{"date_updated":"2021-01-12T06:50:47Z","doi":"10.4007/annals.2013.177.3.8","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Tamas Hausel","last_name":"Hausel","first_name":"Tamas"},{"first_name":"Emmanuel","last_name":"Letellier","full_name":"Letellier, Emmanuel"},{"full_name":"Rodríguez Villegas, Fernando","first_name":"Fernando","last_name":"Rodríguez Villegas"}],"date_published":"2013-01-01T00:00:00Z","quality_controlled":0,"extern":1,"abstract":[{"lang":"eng","text":"We give a cohomological interpretation of both the Kac polynomial and the refined Donaldson-Thomas-invariants of quivers. This interpretation yields a proof of a conjecture of Kac from 1982 and gives a new perspective on recent work of Kontsevich-Soibelman. Thisis achieved by computing, via an arithmetic Fourier transform, the dimensions of the isotypical components of the cohomology of associated Nakajima quiver varieties under the action of a Weyl group. The generating function of the corresponding Poincare polynomials is an extension of Hua's formula for Kac polynomials of quivers involving Hall-Littlewood symmetric functions. The resulting formulae contain a wide range of information on the geometry of the quiver varieties."}],"publisher":"Princeton University Press","title":"Positivity for Kac polynomials and DT-invariants of quivers","publication":"Annals of Mathematics","publist_id":"5754","date_created":"2018-12-11T11:52:02Z","day":"01","issue":"3","status":"public","oa":1,"acknowledgement":"The first author thanks the Royal Society for funding his research 2005-2012 in the form of a Royal Society University Research Fellowship as well as the Mathematical Institute and Wadham College in Oxford for a very productive environment. The second author is supported by Agence Nationale de la Recherche grant\nANR-09-JCJC-0102-01. The third author is supported by the NSF grant DMS-1101484 and a Research Scholarship from the Clay Mathematical Institute.","month":"01","citation":{"chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Positivity for Kac Polynomials and DT-Invariants of Quivers.” <i>Annals of Mathematics</i>. Princeton University Press, 2013. <a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">https://doi.org/10.4007/annals.2013.177.3.8</a>.","ieee":"T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Positivity for Kac polynomials and DT-invariants of quivers,” <i>Annals of Mathematics</i>, vol. 177, no. 3. Princeton University Press, pp. 1147–1168, 2013.","apa":"Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2013). Positivity for Kac polynomials and DT-invariants of quivers. <i>Annals of Mathematics</i>. Princeton University Press. <a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">https://doi.org/10.4007/annals.2013.177.3.8</a>","ama":"Hausel T, Letellier E, Rodríguez Villegas F. Positivity for Kac polynomials and DT-invariants of quivers. <i>Annals of Mathematics</i>. 2013;177(3):1147-1168. doi:<a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">10.4007/annals.2013.177.3.8</a>","ista":"Hausel T, Letellier E, Rodríguez Villegas F. 2013. Positivity for Kac polynomials and DT-invariants of quivers. Annals of Mathematics. 177(3), 1147–1168.","short":"T. Hausel, E. Letellier, F. Rodríguez Villegas, Annals of Mathematics 177 (2013) 1147–1168.","mla":"Hausel, Tamás, et al. “Positivity for Kac Polynomials and DT-Invariants of Quivers.” <i>Annals of Mathematics</i>, vol. 177, no. 3, Princeton University Press, 2013, pp. 1147–68, doi:<a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">10.4007/annals.2013.177.3.8</a>."},"type":"journal_article","page":"1147 - 1168","volume":177,"publication_status":"published","year":"2013","main_file_link":[{"url":"http://arxiv.org/abs/1204.2375","open_access":"1"}],"_id":"1442","intvolume":"       177"},{"page":"29 - 70","volume":25,"type":"book_chapter","_id":"1443","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1102.1717"}],"intvolume":"        25","publication_status":"published","year":"2013","status":"public","oa":1,"day":"15","citation":{"ama":"Hausel T. Global topology of the Hitchin system. In: <i>Handbook of Moduli: Volume II</i>. Vol 25. International Press; 2013:29-70.","mla":"Hausel, Tamás. “Global Topology of the Hitchin System.” <i>Handbook of Moduli: Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.","ista":"Hausel T. 2013.Global topology of the Hitchin system. In: Handbook of Moduli: Volume II. Advanced Lectures in Mathematics, vol. 25, 29–70.","short":"T. Hausel, in:, Handbook of Moduli: Volume II, International Press, 2013, pp. 29–70.","chicago":"Hausel, Tamás. “Global Topology of the Hitchin System.” In <i>Handbook of Moduli: Volume II</i>, 25:29–70. International Press, 2013.","ieee":"T. Hausel, “Global topology of the Hitchin system,” in <i>Handbook of Moduli: Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.","apa":"Hausel, T. (2013). Global topology of the Hitchin system. In <i>Handbook of Moduli: Volume II</i> (Vol. 25, pp. 29–70). International Press."},"month":"03","title":"Global topology of the Hitchin system","publication":"Handbook of Moduli: Volume II","publisher":"International Press","date_created":"2018-12-11T11:52:03Z","publist_id":"5753","date_published":"2013-03-15T00:00:00Z","author":[{"first_name":"Tamas","last_name":"Hausel","full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"}],"alternative_title":["Advanced Lectures in Mathematics"],"date_updated":"2021-01-12T06:50:47Z","abstract":[{"text":"Here we survey several results and conjectures on the cohomology of the total space of the Hitchin system: the moduli space of semi-stable rank n and degree d Higgs bundles on a complex algebraic curve C. The picture emerging is a dynamic mixture of ideas originating in theoretical physics such as gauge theory and mirror symmetry, Weil conjectures in arithmetic algebraic geometry, representation theory of finite groups of Lie type and Langlands duality in number theory.","lang":"eng"}],"extern":1,"quality_controlled":0},{"publisher":"Academic Press","title":"Arithmetic harmonic analysis on character and quiver varieties II","publication":"Advances in Mathematics","publist_id":"5724","date_created":"2018-12-11T11:52:12Z","date_updated":"2021-01-12T06:50:57Z","doi":"10.1016/j.aim.2012.10.009","date_published":"2013-02-15T00:00:00Z","author":[{"first_name":"Tamas","last_name":"Hausel","full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Letellier, Emmanuel","last_name":"Letellier","first_name":"Emmanuel"},{"full_name":"Rodríguez Villegas, Fernando","first_name":"Fernando","last_name":"Rodríguez Villegas"}],"extern":1,"quality_controlled":0,"abstract":[{"lang":"eng","text":"We study connections between the topology of generic character varieties of fundamental groups of punctured Riemann surfaces, Macdonald polynomials, quiver representations, Hilbert schemes on Cx × Cx, modular forms and multiplicities in tensor products of irreducible characters of finite general linear groups."}],"type":"journal_article","page":"85 - 128","volume":234,"publication_status":"published","year":"2013","_id":"1469","intvolume":"       234","day":"15","status":"public","acknowledgement":"During the preparation of this paper TH was supported by a Royal Society University Research Fellowship at the University of Oxford. EL was supported by ANR-09-JCJC-0102-01. FRV was supported by NSF grant DMS-0200605, an FRA from the University of Texas at Austin, EPSRC grant EP/G027110/1, Visiting Fellowships at All Souls and Wadham Colleges in Oxford and a Research Scholarship from the Clay Mathematical Institute.","month":"02","citation":{"mla":"Hausel, Tamás, et al. “Arithmetic Harmonic Analysis on Character and Quiver Varieties II.” <i>Advances in Mathematics</i>, vol. 234, Academic Press, 2013, pp. 85–128, doi:<a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">10.1016/j.aim.2012.10.009</a>.","ista":"Hausel T, Letellier E, Rodríguez Villegas F. 2013. Arithmetic harmonic analysis on character and quiver varieties II. Advances in Mathematics. 234, 85–128.","short":"T. Hausel, E. Letellier, F. Rodríguez Villegas, Advances in Mathematics 234 (2013) 85–128.","ama":"Hausel T, Letellier E, Rodríguez Villegas F. Arithmetic harmonic analysis on character and quiver varieties II. <i>Advances in Mathematics</i>. 2013;234:85-128. doi:<a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">10.1016/j.aim.2012.10.009</a>","apa":"Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2013). Arithmetic harmonic analysis on character and quiver varieties II. <i>Advances in Mathematics</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">https://doi.org/10.1016/j.aim.2012.10.009</a>","ieee":"T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Arithmetic harmonic analysis on character and quiver varieties II,” <i>Advances in Mathematics</i>, vol. 234. Academic Press, pp. 85–128, 2013.","chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Arithmetic Harmonic Analysis on Character and Quiver Varieties II.” <i>Advances in Mathematics</i>. Academic Press, 2013. <a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">https://doi.org/10.1016/j.aim.2012.10.009</a>."}},{"date_published":"2013-01-01T00:00:00Z","author":[{"full_name":"De Cataldo, Mark A","last_name":"De Cataldo","first_name":"Mark"},{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Tamas Hausel","last_name":"Hausel","first_name":"Tamas"},{"last_name":"Migliorini","first_name":"Luca","full_name":"Migliorini, Luca"}],"doi":"10.5427/jsing.2013.7c","date_updated":"2021-01-12T06:50:58Z","abstract":[{"text":"We show that a natural isomorphism between the rational cohomology groups of the two zero-dimensional Hilbert schemes of n-points of two surfaces, the affine plane minus the axes and the cotangent bundle of an elliptic curve, exchanges the weight filtration on the first set of cohomology groups with the perverse Leray filtration associated with a natural fibration on the second set of cohomology groups. We discuss some associated hard Lefschetz phenomena.","lang":"eng"}],"quality_controlled":0,"extern":1,"title":"Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces","publication":"Journal of Singularities","publisher":"Worldwide Center of Mathematics","date_created":"2018-12-11T11:52:12Z","publist_id":"5725","oa":1,"status":"public","acknowledgement":"Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F. Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca Migliorini was partially supported by PRIN 2007 project \"Spazi di moduli e teoria di Lie\"","day":"01","citation":{"ista":"De Cataldo M, Hausel T, Migliorini L. 2013. Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. Journal of Singularities. 7, 23–38.","short":"M. De Cataldo, T. Hausel, L. Migliorini, Journal of Singularities 7 (2013) 23–38.","mla":"De Cataldo, Mark, et al. “Exchange between Perverse and Weight Filtration for the Hilbert Schemes of Points of Two Surfaces.” <i>Journal of Singularities</i>, vol. 7, Worldwide Center of Mathematics, 2013, pp. 23–38, doi:<a href=\"https://doi.org/10.5427/jsing.2013.7c\">10.5427/jsing.2013.7c</a>.","ama":"De Cataldo M, Hausel T, Migliorini L. Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. <i>Journal of Singularities</i>. 2013;7:23-38. doi:<a href=\"https://doi.org/10.5427/jsing.2013.7c\">10.5427/jsing.2013.7c</a>","apa":"De Cataldo, M., Hausel, T., &#38; Migliorini, L. (2013). Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. <i>Journal of Singularities</i>. Worldwide Center of Mathematics. <a href=\"https://doi.org/10.5427/jsing.2013.7c\">https://doi.org/10.5427/jsing.2013.7c</a>","ieee":"M. De Cataldo, T. Hausel, and L. Migliorini, “Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces,” <i>Journal of Singularities</i>, vol. 7. Worldwide Center of Mathematics, pp. 23–38, 2013.","chicago":"De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Exchange between Perverse and Weight Filtration for the Hilbert Schemes of Points of Two Surfaces.” <i>Journal of Singularities</i>. Worldwide Center of Mathematics, 2013. <a href=\"https://doi.org/10.5427/jsing.2013.7c\">https://doi.org/10.5427/jsing.2013.7c</a>."},"month":"01","page":"23 - 38","volume":7,"type":"journal_article","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1012.2583"}],"_id":"1470","intvolume":"         7","publication_status":"published","year":"2013"},{"date_created":"2018-12-11T11:51:17Z","publist_id":"5962","title":"Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models","publication":"Communications in Partial Differential Equations","publisher":"Taylor & Francis","abstract":[{"lang":"eng","text":"We prove uniqueness of solutions of the DLSS equation in a class of sufficiently regular functions. The global weak solutions of the DLSS equation constructed by Jüngel and Matthes belong to this class of uniqueness. We also show uniqueness of solutions for the quantum drift-diffusion equation, which contains additional drift and second-order diffusion terms. The results hold in case of periodic or Dirichlet-Neumann boundary conditions. Our proof is based on a monotonicity property of the DLSS operator and sophisticated approximation arguments; we derive a PDE satisfied by the pointwise square root of the solution, which enables us to exploit the monotonicity property of the operator."}],"extern":1,"quality_controlled":0,"author":[{"full_name":"Julian Fischer","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","first_name":"Julian L","last_name":"Fischer","orcid":"0000-0002-0479-558X"}],"date_published":"2013-11-01T00:00:00Z","date_updated":"2021-01-12T06:49:46Z","doi":"10.1080/03605302.2013.823548","_id":"1307","intvolume":"        38","publication_status":"published","year":"2013","page":"2004 - 2047","volume":38,"type":"journal_article","citation":{"ieee":"J. L. Fischer, “Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models,” <i>Communications in Partial Differential Equations</i>, vol. 38, no. 11. Taylor &#38; Francis, pp. 2004–2047, 2013.","chicago":"Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis, 2013. <a href=\"https://doi.org/10.1080/03605302.2013.823548\">https://doi.org/10.1080/03605302.2013.823548</a>.","apa":"Fischer, J. L. (2013). Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/03605302.2013.823548\">https://doi.org/10.1080/03605302.2013.823548</a>","ama":"Fischer JL. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. <i>Communications in Partial Differential Equations</i>. 2013;38(11):2004-2047. doi:<a href=\"https://doi.org/10.1080/03605302.2013.823548\">10.1080/03605302.2013.823548</a>","ista":"Fischer JL. 2013. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. 38(11), 2004–2047.","mla":"Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” <i>Communications in Partial Differential Equations</i>, vol. 38, no. 11, Taylor &#38; Francis, 2013, pp. 2004–47, doi:<a href=\"https://doi.org/10.1080/03605302.2013.823548\">10.1080/03605302.2013.823548</a>.","short":"J.L. Fischer, Communications in Partial Differential Equations 38 (2013) 2004–2047."},"month":"11","status":"public","day":"01","issue":"11"},{"date_updated":"2021-01-12T06:49:46Z","doi":"10.1137/120874291","date_published":"2013-01-01T00:00:00Z","author":[{"id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","full_name":"Julian Fischer","last_name":"Fischer","orcid":"0000-0002-0479-558X","first_name":"Julian L"}],"extern":1,"quality_controlled":0,"abstract":[{"lang":"eng","text":"We derive sufficient conditions for advection-driven backward motion of the free boundary in a chemotaxis model with degenerate mobility. In this model, a porous-medium-type diffusive term and an advection term are in competition. The former induces forward motion, the latter may induce backward motion of the free boundary depending on the direction of advection. We deduce conditions on the growth of the initial data at the free boundary which ensure that at least initially the advection term is dominant. This implies local backward motion of the free boundary provided the advection is (locally) directed appropriately. Our result is based on a new class of moving test functions and Stampacchia's lemma. As a by-product of our estimates, we obtain quantitative bounds on the spreading of the support of solutions for the chemotaxis model and provide a proof for the finite speed of the support propagation property of solutions."}],"publisher":"Society for Industrial and Applied Mathematics ","publication":"SIAM Journal on Mathematical Analysis","title":"Advection-driven support shrinking in a chemotaxis model with degenerate mobility","publist_id":"5963","date_created":"2018-12-11T11:51:17Z","issue":"3","day":"01","status":"public","month":"01","citation":{"ista":"Fischer JL. 2013. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. 45(3), 1585–1615.","short":"J.L. Fischer, SIAM Journal on Mathematical Analysis 45 (2013) 1585–1615.","mla":"Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” <i>SIAM Journal on Mathematical Analysis</i>, vol. 45, no. 3, Society for Industrial and Applied Mathematics , 2013, pp. 1585–615, doi:<a href=\"https://doi.org/10.1137/120874291\">10.1137/120874291</a>.","ama":"Fischer JL. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. <i>SIAM Journal on Mathematical Analysis</i>. 2013;45(3):1585-1615. doi:<a href=\"https://doi.org/10.1137/120874291\">10.1137/120874291</a>","apa":"Fischer, J. L. (2013). Advection-driven support shrinking in a chemotaxis model with degenerate mobility. <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics . <a href=\"https://doi.org/10.1137/120874291\">https://doi.org/10.1137/120874291</a>","ieee":"J. L. Fischer, “Advection-driven support shrinking in a chemotaxis model with degenerate mobility,” <i>SIAM Journal on Mathematical Analysis</i>, vol. 45, no. 3. Society for Industrial and Applied Mathematics , pp. 1585–1615, 2013.","chicago":"Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics , 2013. <a href=\"https://doi.org/10.1137/120874291\">https://doi.org/10.1137/120874291</a>."},"type":"journal_article","volume":45,"page":"1585 - 1615","year":"2013","publication_status":"published","intvolume":"        45","_id":"1308"},{"month":"11","citation":{"apa":"Fischer, J. L. (2013). Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. <i>Journal of Differential Equations</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">https://doi.org/10.1016/j.jde.2013.07.028</a>","chicago":"Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” <i>Journal of Differential Equations</i>. Academic Press, 2013. <a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">https://doi.org/10.1016/j.jde.2013.07.028</a>.","ieee":"J. L. Fischer, “Optimal lower bounds on asymptotic support propagation rates for the thin-film equation,” <i>Journal of Differential Equations</i>, vol. 255, no. 10. Academic Press, pp. 3127–3149, 2013.","short":"J.L. Fischer, Journal of Differential Equations 255 (2013) 3127–3149.","mla":"Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” <i>Journal of Differential Equations</i>, vol. 255, no. 10, Academic Press, 2013, pp. 3127–49, doi:<a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">10.1016/j.jde.2013.07.028</a>.","ista":"Fischer JL. 2013. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. 255(10), 3127–3149.","ama":"Fischer JL. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. <i>Journal of Differential Equations</i>. 2013;255(10):3127-3149. doi:<a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">10.1016/j.jde.2013.07.028</a>"},"day":"15","issue":"10","status":"public","publication_status":"published","year":"2013","_id":"1310","intvolume":"       255","type":"journal_article","page":"3127 - 3149","volume":255,"quality_controlled":0,"extern":1,"abstract":[{"lang":"eng","text":"We derive lower bounds on asymptotic support propagation rates for strong solutions of the Cauchy problem for the thin-film equation. The bounds coincide up to a constant factor with the previously known upper bounds and thus are sharp. Our results hold in case of at most three spatial dimensions and n∈. (1, 2.92). The result is established using weighted backward entropy inequalities with singular weight functions to yield a differential inequality; combined with some entropy production estimates, the optimal rate of propagation is obtained. To the best of our knowledge, these are the first lower bounds on asymptotic support propagation rates for higher-order nonnegativity-preserving parabolic equations."}],"doi":"10.1016/j.jde.2013.07.028","date_updated":"2021-01-12T06:49:47Z","date_published":"2013-11-15T00:00:00Z","author":[{"first_name":"Julian L","last_name":"Fischer","orcid":"0000-0002-0479-558X","full_name":"Julian Fischer","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87"}],"publist_id":"5961","date_created":"2018-12-11T11:51:18Z","publisher":"Academic Press","title":"Optimal lower bounds on asymptotic support propagation rates for the thin-film equation","publication":"Journal of Differential Equations"},{"quality_controlled":"1","keyword":["Organic Chemistry"],"scopus_import":"1","article_processing_charge":"No","doi":"10.1055/s-0033-1340087","date_updated":"2023-08-08T07:47:35Z","date_published":"2013-10-22T00:00:00Z","author":[{"full_name":"Ely, Tal","last_name":"Ely","first_name":"Tal"},{"first_name":"Sanjib","last_name":"Das","full_name":"Das, Sanjib"},{"full_name":"Li, Wenjie","last_name":"Li","first_name":"Wenjie"},{"first_name":"Pintu","last_name":"Kundu","full_name":"Kundu, Pintu"},{"full_name":"Tirosh, Einat","last_name":"Tirosh","first_name":"Einat"},{"last_name":"Cahen","first_name":"David","full_name":"Cahen, David"},{"full_name":"Vilan, Ayelet","first_name":"Ayelet","last_name":"Vilan"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","last_name":"Klajn","first_name":"Rafal"}],"publication_status":"published","intvolume":"        24","month":"10","language":[{"iso":"eng"}],"day":"22","date_created":"2023-08-01T09:47:17Z","oa_version":"None","publisher":"Georg Thieme Verlag","publication":"Synlett","title":"Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol","extern":"1","abstract":[{"lang":"eng","text":"We report a method for preparing electrode–molecule–electrode junctions that incorporate nonsymmetrical azobenzene dithiols. Our approach is based on sequential deprotection of thiol moieties originally carrying two different protecting groups. The azobenzene derivatives retained their switching properties within monolayers and permitted the photocontrol of electrical conductance."}],"year":"2013","_id":"13405","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","volume":24,"page":"2370-2374","publication_identifier":{"eissn":["1437-2096"],"issn":["0936-5214"]},"citation":{"apa":"Ely, T., Das, S., Li, W., Kundu, P., Tirosh, E., Cahen, D., … Klajn, R. (2013). Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol. <i>Synlett</i>. Georg Thieme Verlag. <a href=\"https://doi.org/10.1055/s-0033-1340087\">https://doi.org/10.1055/s-0033-1340087</a>","chicago":"Ely, Tal, Sanjib Das, Wenjie Li, Pintu Kundu, Einat Tirosh, David Cahen, Ayelet Vilan, and Rafal Klajn. “Photocontrol of Electrical Conductance with a Nonsymmetrical Azobenzene Dithiol.” <i>Synlett</i>. Georg Thieme Verlag, 2013. <a href=\"https://doi.org/10.1055/s-0033-1340087\">https://doi.org/10.1055/s-0033-1340087</a>.","ieee":"T. Ely <i>et al.</i>, “Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol,” <i>Synlett</i>, vol. 24, no. 18. Georg Thieme Verlag, pp. 2370–2374, 2013.","mla":"Ely, Tal, et al. “Photocontrol of Electrical Conductance with a Nonsymmetrical Azobenzene Dithiol.” <i>Synlett</i>, vol. 24, no. 18, Georg Thieme Verlag, 2013, pp. 2370–74, doi:<a href=\"https://doi.org/10.1055/s-0033-1340087\">10.1055/s-0033-1340087</a>.","ista":"Ely T, Das S, Li W, Kundu P, Tirosh E, Cahen D, Vilan A, Klajn R. 2013. Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol. Synlett. 24(18), 2370–2374.","short":"T. Ely, S. Das, W. Li, P. Kundu, E. Tirosh, D. Cahen, A. Vilan, R. Klajn, Synlett 24 (2013) 2370–2374.","ama":"Ely T, Das S, Li W, et al. Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol. <i>Synlett</i>. 2013;24(18):2370-2374. doi:<a href=\"https://doi.org/10.1055/s-0033-1340087\">10.1055/s-0033-1340087</a>"},"issue":"18","article_type":"original","status":"public"},{"scopus_import":"1","keyword":["Mechanical Engineering","Mechanics of Materials","General Materials Science"],"quality_controlled":"1","date_published":"2013-01-18T00:00:00Z","author":[{"first_name":"Sanjib","last_name":"Das","full_name":"Das, Sanjib"},{"first_name":"Priyadarshi","last_name":"Ranjan","full_name":"Ranjan, Priyadarshi"},{"last_name":"Maiti","first_name":"Pradipta Sankar","full_name":"Maiti, Pradipta Sankar"},{"first_name":"Gurvinder","last_name":"Singh","full_name":"Singh, Gurvinder"},{"full_name":"Leitus, Gregory","last_name":"Leitus","first_name":"Gregory"},{"full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","last_name":"Klajn"}],"doi":"10.1002/adma.201201734","date_updated":"2023-08-08T07:49:36Z","article_processing_charge":"No","language":[{"iso":"eng"}],"month":"01","pmid":1,"day":"18","intvolume":"        25","publication_status":"published","abstract":[{"text":"Dual-responsive nanoparticles are designed by functionalizing magnetic cores with light-responsive ligands. These materials respond to both light and magnetic fields and can be assembled into various higher-order structures, depending on the relative contributions of these two stimuli.","lang":"eng"}],"extern":"1","oa_version":"None","date_created":"2023-08-01T09:47:30Z","title":"Dual-responsive nanoparticles and their self-assembly","publication":"Advanced Materials","publisher":"Wiley","citation":{"apa":"Das, S., Ranjan, P., Maiti, P. S., Singh, G., Leitus, G., &#38; Klajn, R. (2013). Dual-responsive nanoparticles and their self-assembly. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.201201734\">https://doi.org/10.1002/adma.201201734</a>","chicago":"Das, Sanjib, Priyadarshi Ranjan, Pradipta Sankar Maiti, Gurvinder Singh, Gregory Leitus, and Rafal Klajn. “Dual-Responsive Nanoparticles and Their Self-Assembly.” <i>Advanced Materials</i>. Wiley, 2013. <a href=\"https://doi.org/10.1002/adma.201201734\">https://doi.org/10.1002/adma.201201734</a>.","ieee":"S. Das, P. Ranjan, P. S. Maiti, G. Singh, G. Leitus, and R. Klajn, “Dual-responsive nanoparticles and their self-assembly,” <i>Advanced Materials</i>, vol. 25, no. 3. Wiley, pp. 422–426, 2013.","ista":"Das S, Ranjan P, Maiti PS, Singh G, Leitus G, Klajn R. 2013. Dual-responsive nanoparticles and their self-assembly. Advanced Materials. 25(3), 422–426.","short":"S. Das, P. Ranjan, P.S. Maiti, G. Singh, G. Leitus, R. Klajn, Advanced Materials 25 (2013) 422–426.","mla":"Das, Sanjib, et al. “Dual-Responsive Nanoparticles and Their Self-Assembly.” <i>Advanced Materials</i>, vol. 25, no. 3, Wiley, 2013, pp. 422–26, doi:<a href=\"https://doi.org/10.1002/adma.201201734\">10.1002/adma.201201734</a>.","ama":"Das S, Ranjan P, Maiti PS, Singh G, Leitus G, Klajn R. Dual-responsive nanoparticles and their self-assembly. <i>Advanced Materials</i>. 2013;25(3):422-426. doi:<a href=\"https://doi.org/10.1002/adma.201201734\">10.1002/adma.201201734</a>"},"publication_identifier":{"issn":["0935-9648"]},"status":"public","external_id":{"pmid":["22933327"]},"article_type":"original","issue":"3","_id":"13406","year":"2013","page":"422-426","volume":25,"type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"abstract":[{"text":"We study two-player zero-sum games over infinite-state graphs equipped with ωB and finitary conditions. Our first contribution is about the strategy complexity, i.e the memory required for winning strategies: we prove that over general infinite-state graphs, memoryless strategies are sufficient for finitary Büchi, and finite-memory suffices for finitary parity games. We then study pushdown games with boundedness conditions, with two contributions. First we prove a collapse result for pushdown games with ωB-conditions, implying the decidability of solving these games. Second we consider pushdown games with finitary parity along with stack boundedness conditions, and show that solving these games is EXPTIME-complete.","lang":"eng"}],"series_title":"Leibniz International Proceedings in Informatics","publication":"22nd EACSL Annual Conference on Computer Science Logic","title":"Infinite-state games with finitary conditions","department":[{"_id":"KrCh"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","date_created":"2018-12-11T11:51:39Z","ec_funded":1,"oa_version":"Published Version","publist_id":"5837","oa":1,"status":"public","citation":{"apa":"Chatterjee, K., &#38; Fijalkow, N. (2013). Infinite-state games with finitary conditions. In <i>22nd EACSL Annual Conference on Computer Science Logic</i> (Vol. 23, pp. 181–196). Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">https://doi.org/10.4230/LIPIcs.CSL.2013.181</a>","chicago":"Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” In <i>22nd EACSL Annual Conference on Computer Science Logic</i>, 23:181–96. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013. <a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">https://doi.org/10.4230/LIPIcs.CSL.2013.181</a>.","ieee":"K. Chatterjee and N. Fijalkow, “Infinite-state games with finitary conditions,” in <i>22nd EACSL Annual Conference on Computer Science Logic</i>, Torino, Italy, 2013, vol. 23, pp. 181–196.","short":"K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.","mla":"Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” <i>22nd EACSL Annual Conference on Computer Science Logic</i>, vol. 23, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–96, doi:<a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">10.4230/LIPIcs.CSL.2013.181</a>.","ista":"Chatterjee K, Fijalkow N. 2013. Infinite-state games with finitary conditions. 22nd EACSL Annual Conference on Computer Science Logic. CSL: Computer Science LogicLeibniz International Proceedings in Informatics, LIPIcs, vol. 23, 181–196.","ama":"Chatterjee K, Fijalkow N. Infinite-state games with finitary conditions. In: <i>22nd EACSL Annual Conference on Computer Science Logic</i>. Vol 23. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2013:181-196. doi:<a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">10.4230/LIPIcs.CSL.2013.181</a>"},"volume":23,"page":"181 - 196","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference","_id":"1374","year":"2013","has_accepted_license":"1","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","first_name":"Krishnendu"},{"first_name":"Nathanaël","last_name":"Fijalkow","full_name":"Fijalkow, Nathanaël"}],"pubrep_id":"624","date_published":"2013-09-01T00:00:00Z","alternative_title":["LIPIcs"],"date_updated":"2021-01-12T06:50:14Z","doi":"10.4230/LIPIcs.CSL.2013.181","scopus_import":1,"quality_controlled":"1","file_date_updated":"2020-07-14T12:44:47Z","conference":{"name":"CSL: Computer Science Logic","end_date":"2013-09-05","location":"Torino, Italy","start_date":"203-09-02"},"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["000"],"day":"01","month":"09","project":[{"call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory","grant_number":"S11407","call_identifier":"FWF"},{"call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"language":[{"iso":"eng"}],"intvolume":"        23","file":[{"access_level":"open_access","creator":"system","relation":"main_file","date_created":"2018-12-12T10:13:38Z","content_type":"application/pdf","date_updated":"2020-07-14T12:44:47Z","file_id":"5023","checksum":"b7091a3866db573c0db5ec486952255e","file_name":"IST-2016-624-v1+1_ChKr_Infinite-state_games_2013_17.pdf","file_size":547296}],"publication_status":"published"},{"page":"18 - 25","type":"conference","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1376","publication_status":"published","year":"2013","status":"public","day":"11","citation":{"ieee":"K. Chatterjee, T. A. Henzinger, J. Otop, and A. Pavlogiannis, “Distributed synthesis for LTL fragments,” in <i>13th International Conference on Formal Methods in Computer-Aided Design</i>, Portland, OR, United States, 2013, pp. 18–25.","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, Jan Otop, and Andreas Pavlogiannis. “Distributed Synthesis for LTL Fragments.” In <i>13th International Conference on Formal Methods in Computer-Aided Design</i>, 18–25. IEEE, 2013. <a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">https://doi.org/10.1109/FMCAD.2013.6679386</a>.","apa":"Chatterjee, K., Henzinger, T. A., Otop, J., &#38; Pavlogiannis, A. (2013). Distributed synthesis for LTL fragments. In <i>13th International Conference on Formal Methods in Computer-Aided Design</i> (pp. 18–25). Portland, OR, United States: IEEE. <a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">https://doi.org/10.1109/FMCAD.2013.6679386</a>","ama":"Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. Distributed synthesis for LTL fragments. In: <i>13th International Conference on Formal Methods in Computer-Aided Design</i>. IEEE; 2013:18-25. doi:<a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">10.1109/FMCAD.2013.6679386</a>","ista":"Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. 2013. Distributed synthesis for LTL fragments. 13th International Conference on Formal Methods in Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 18–25.","mla":"Chatterjee, Krishnendu, et al. “Distributed Synthesis for LTL Fragments.” <i>13th International Conference on Formal Methods in Computer-Aided Design</i>, IEEE, 2013, pp. 18–25, doi:<a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">10.1109/FMCAD.2013.6679386</a>.","short":"K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, in:, 13th International Conference on Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 18–25."},"project":[{"_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","call_identifier":"FWF"},{"call_identifier":"FWF","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications"},{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","name":"Quantitative Reactive Modeling","grant_number":"267989","call_identifier":"FP7"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"language":[{"iso":"eng"}],"month":"12","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"title":"Distributed synthesis for LTL fragments","publication":"13th International Conference on Formal Methods in Computer-Aided Design","publisher":"IEEE","oa_version":"None","date_created":"2018-12-11T11:51:40Z","ec_funded":1,"conference":{"location":"Portland, OR, United States","start_date":"2013-10-20","name":"FMCAD: Formal Methods in Computer-Aided Design","end_date":"2013-10-23"},"publist_id":"5835","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","first_name":"Krishnendu"},{"full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","orcid":"0000−0002−2985−7724","last_name":"Henzinger"},{"last_name":"Otop","first_name":"Jan","id":"2FC5DA74-F248-11E8-B48F-1D18A9856A87","full_name":"Otop, Jan"},{"first_name":"Andreas","orcid":"0000-0002-8943-0722","last_name":"Pavlogiannis","full_name":"Pavlogiannis, Andreas","id":"49704004-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2013-12-11T00:00:00Z","related_material":{"record":[{"id":"5406","relation":"earlier_version","status":"public"}]},"date_updated":"2023-02-23T12:24:53Z","doi":"10.1109/FMCAD.2013.6679386","abstract":[{"lang":"eng","text":"We consider the distributed synthesis problem for temporal logic specifications. Traditionally, the problem has been studied for LTL, and the previous results show that the problem is decidable iff there is no information fork in the architecture. We consider the problem for fragments of LTL and our main results are as follows: (1) We show that the problem is undecidable for architectures with information forks even for the fragment of LTL with temporal operators restricted to next and eventually. (2) For specifications restricted to globally along with non-nested next operators, we establish decidability (in EXPSPACE) for star architectures where the processes receive disjoint inputs, whereas we establish undecidability for architectures containing an information fork-meet structure. (3) Finally, we consider LTL without the next operator, and establish decidability (NEXPTIME-complete) for all architectures for a fragment that consists of a set of safety assumptions, and a set of guarantees where each guarantee is a safety, reachability, or liveness condition."}],"quality_controlled":"1"},{"abstract":[{"text":"It is often difficult to correctly implement a Boolean controller for a complex system, especially when concurrency is involved. Yet, it may be easy to formally specify a controller. For instance, for a pipelined processor it suffices to state that the visible behavior of the pipelined system should be identical to a non-pipelined reference system (Burch-Dill paradigm). We present a novel procedure to efficiently synthesize multiple Boolean control signals from a specification given as a quantified first-order formula (with a specific quantifier structure). Our approach uses uninterpreted functions to abstract details of the design. We construct an unsatisfiable SMT formula from the given specification. Then, from just one proof of unsatisfiability, we use a variant of Craig interpolation to compute multiple coordinated interpolants that implement the Boolean control signals. Our method avoids iterative learning and back-substitution of the control functions. We applied our approach to synthesize a controller for a simple two-stage pipelined processor, and present first experimental results.","lang":"eng"}],"arxiv":1,"publist_id":"5825","ec_funded":1,"date_created":"2018-12-11T11:51:43Z","oa_version":"Preprint","publisher":"IEEE","publication":"2013 Formal Methods in Computer-Aided Design","title":"Synthesizing multiple boolean functions using interpolation on a single proof","department":[{"_id":"ToHe"}],"citation":{"chicago":"Hofferek, Georg, Ashutosh Gupta, Bettina Könighofer, Jie Jiang, and Roderick Bloem. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single Proof.” In <i>2013 Formal Methods in Computer-Aided Design</i>, 77–84. IEEE, 2013. <a href=\"https://doi.org/10.1109/FMCAD.2013.6679394\">https://doi.org/10.1109/FMCAD.2013.6679394</a>.","ieee":"G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, and R. Bloem, “Synthesizing multiple boolean functions using interpolation on a single proof,” in <i>2013 Formal Methods in Computer-Aided Design</i>, Portland, OR, United States, 2013, pp. 77–84.","apa":"Hofferek, G., Gupta, A., Könighofer, B., Jiang, J., &#38; Bloem, R. (2013). Synthesizing multiple boolean functions using interpolation on a single proof. In <i>2013 Formal Methods in Computer-Aided Design</i> (pp. 77–84). Portland, OR, United States: IEEE. <a href=\"https://doi.org/10.1109/FMCAD.2013.6679394\">https://doi.org/10.1109/FMCAD.2013.6679394</a>","ama":"Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. Synthesizing multiple boolean functions using interpolation on a single proof. In: <i>2013 Formal Methods in Computer-Aided Design</i>. IEEE; 2013:77-84. doi:<a href=\"https://doi.org/10.1109/FMCAD.2013.6679394\">10.1109/FMCAD.2013.6679394</a>","mla":"Hofferek, Georg, et al. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single Proof.” <i>2013 Formal Methods in Computer-Aided Design</i>, IEEE, 2013, pp. 77–84, doi:<a href=\"https://doi.org/10.1109/FMCAD.2013.6679394\">10.1109/FMCAD.2013.6679394</a>.","ista":"Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. 2013. Synthesizing multiple boolean functions using interpolation on a single proof. 2013 Formal Methods in Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 77–84.","short":"G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84."},"external_id":{"arxiv":["1308.4767"]},"oa":1,"acknowledgement":"This research was supported by the European Commission through project\r\nDIAMOND  (FP7-2009-IST-4-248613), and  QUAINT  (I774-N23),  ","status":"public","year":"2013","_id":"1385","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference","page":"77 - 84","quality_controlled":"1","doi":"10.1109/FMCAD.2013.6679394","date_updated":"2021-01-12T06:50:19Z","author":[{"last_name":"Hofferek","first_name":"Georg","full_name":"Hofferek, Georg"},{"last_name":"Gupta","first_name":"Ashutosh","id":"335E5684-F248-11E8-B48F-1D18A9856A87","full_name":"Gupta, Ashutosh"},{"full_name":"Könighofer, Bettina","first_name":"Bettina","last_name":"Könighofer"},{"full_name":"Jiang, Jie","last_name":"Jiang","first_name":"Jie"},{"first_name":"Roderick","last_name":"Bloem","full_name":"Bloem, Roderick"}],"date_published":"2013-12-11T00:00:00Z","conference":{"location":"Portland, OR, United States","start_date":"2013-10-20","name":"FMCAD: Formal Methods in Computer-Aided Design","end_date":"2013-10-23"},"month":"12","language":[{"iso":"eng"}],"project":[{"call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23"},{"call_identifier":"FP7","name":"Quantitative Reactive Modeling","grant_number":"267989","_id":"25EE3708-B435-11E9-9278-68D0E5697425"}],"day":"11","publication_status":"published","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1308.4767"}]}]