[{"author":[{"first_name":"Dominik","last_name":"Refardt","full_name":"Refardt, Dominik"},{"last_name":"Bergmiller","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","first_name":"Tobias","full_name":"Bergmiller, Tobias","orcid":"0000-0001-5396-4346"},{"full_name":"Kümmerli, Rolf","last_name":"Kümmerli","first_name":"Rolf"}],"related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"2853"}]},"department":[{"_id":"CaGu"}],"date_created":"2021-07-30T08:08:09Z","oa_version":"Published Version","doi":"10.5061/dryad.b1q2n","citation":{"ista":"Refardt D, Bergmiller T, Kümmerli R. 2013. Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection, Dryad, <a href=\"https://doi.org/10.5061/dryad.b1q2n\">10.5061/dryad.b1q2n</a>.","ieee":"D. Refardt, T. Bergmiller, and R. Kümmerli, “Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection.” Dryad, 2013.","mla":"Refardt, Dominik, et al. <i>Data from: Altruism Can Evolve When Relatedness Is Low: Evidence from Bacteria Committing Suicide upon Phage Infection</i>. Dryad, 2013, doi:<a href=\"https://doi.org/10.5061/dryad.b1q2n\">10.5061/dryad.b1q2n</a>.","apa":"Refardt, D., Bergmiller, T., &#38; Kümmerli, R. (2013). Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. Dryad. <a href=\"https://doi.org/10.5061/dryad.b1q2n\">https://doi.org/10.5061/dryad.b1q2n</a>","short":"D. Refardt, T. Bergmiller, R. Kümmerli, (2013).","chicago":"Refardt, Dominik, Tobias Bergmiller, and Rolf Kümmerli. “Data from: Altruism Can Evolve When Relatedness Is Low: Evidence from Bacteria Committing Suicide upon Phage Infection.” Dryad, 2013. <a href=\"https://doi.org/10.5061/dryad.b1q2n\">https://doi.org/10.5061/dryad.b1q2n</a>.","ama":"Refardt D, Bergmiller T, Kümmerli R. Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. 2013. doi:<a href=\"https://doi.org/10.5061/dryad.b1q2n\">10.5061/dryad.b1q2n</a>"},"_id":"9751","article_processing_charge":"No","type":"research_data_reference","title":"Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection","status":"public","day":"21","year":"2013","main_file_link":[{"url":"https://doi.org/10.5061/dryad.b1q2n","open_access":"1"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2023-10-18T06:43:22Z","publisher":"Dryad","abstract":[{"lang":"eng","text":"High relatedness among interacting individuals has generally been considered a precondition for the evolution of altruism. However, kin-selection theory also predicts the evolution of altruism when relatedness is low, as long as the cost of the altruistic act is minor compared to its benefit. Here, we demonstrate evidence for a low-cost altruistic act in bacteria. We investigated Escherichia coli responding to the attack of an obligately lytic phage by committing suicide in order to prevent parasite transmission to nearby relatives. We found that bacterial suicide provides large benefits to survivors at marginal costs to committers. The cost of suicide was low because infected cells are moribund, rapidly dying upon phage infection, such that no more opportunity for reproduction remains. As a consequence of its marginal cost, host suicide was selectively favoured even when relatedness between committers and survivors approached zero. Altogether, our findings demonstrate that low-cost suicide can evolve with ease, represents an effective host-defence strategy, and seems to be widespread among microbes. Moreover, low-cost suicide might also occur in higher organisms as exemplified by infected social insect workers leaving the colony to die in isolation."}],"oa":1,"month":"03","date_published":"2013-03-21T00:00:00Z"},{"month":"10","date_published":"2013-10-01T00:00:00Z","oa":1,"abstract":[{"text":"Short-read sequencing technologies have in principle made it feasible to draw detailed inferences about the recent history of any organism. In practice, however, this remains challenging due to the difficulty of genome assembly in most organisms and the lack of statistical methods powerful enough to discriminate among recent, non-equilibrium histories. We address both the assembly and inference challenges. We develop a bioinformatic pipeline for generating outgroup-rooted alignments of orthologous sequence blocks from de novo low-coverage short-read data for a small number of genomes, and show how such sequence blocks can be used to fit explicit models of population divergence and admixture in a likelihood framework. To illustrate our approach, we reconstruct the Pleistocene history of an oak-feeding insect (the oak gallwasp Biorhiza pallida) which, in common with many other taxa, was restricted during Pleistocene ice ages to a longitudinal series of southern refugia spanning theWestern Palaearctic. Our analysis of sequence blocks sampled from a single genome from each of three major glacial refugia reveals support for an unexpected history dominated by recent admixture. Despite the fact that 80% of the genome is affected by admixture during the last glacial cycle, we are able to infer the deeper divergence history of these populations. These inferences are robust to variation in block length, mutation model, and the sampling location of individual genomes within refugia. This combination of de novo assembly and numerical likelihood calculation provides a powerful framework for estimating recent population history that can be applied to any organism without the need for prior genetic resources.","lang":"eng"}],"publisher":"Dryad","date_updated":"2023-02-23T10:31:17Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.r3r60"}],"year":"2013","day":"01","status":"public","title":"Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies","type":"research_data_reference","_id":"9754","article_processing_charge":"No","citation":{"apa":"Hearn, J., Stone, G., Barton, N. H., Lohse, K., &#38; Bunnefeld, L. (2013). Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies. Dryad. <a href=\"https://doi.org/10.5061/dryad.r3r60\">https://doi.org/10.5061/dryad.r3r60</a>","chicago":"Hearn, Jack, Graham Stone, Nicholas H Barton, Konrad Lohse, and Lynsey Bunnefeld. “Data from: Likelihood-Based Inference of Population History from Low Coverage de Novo Genome Assemblies.” Dryad, 2013. <a href=\"https://doi.org/10.5061/dryad.r3r60\">https://doi.org/10.5061/dryad.r3r60</a>.","short":"J. Hearn, G. Stone, N.H. Barton, K. Lohse, L. Bunnefeld, (2013).","ista":"Hearn J, Stone G, Barton NH, Lohse K, Bunnefeld L. 2013. Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies, Dryad, <a href=\"https://doi.org/10.5061/dryad.r3r60\">10.5061/dryad.r3r60</a>.","ieee":"J. Hearn, G. Stone, N. H. Barton, K. Lohse, and L. Bunnefeld, “Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies.” Dryad, 2013.","mla":"Hearn, Jack, et al. <i>Data from: Likelihood-Based Inference of Population History from Low Coverage de Novo Genome Assemblies</i>. Dryad, 2013, doi:<a href=\"https://doi.org/10.5061/dryad.r3r60\">10.5061/dryad.r3r60</a>.","ama":"Hearn J, Stone G, Barton NH, Lohse K, Bunnefeld L. Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies. 2013. doi:<a href=\"https://doi.org/10.5061/dryad.r3r60\">10.5061/dryad.r3r60</a>"},"doi":"10.5061/dryad.r3r60","oa_version":"Published Version","date_created":"2021-07-30T08:31:22Z","department":[{"_id":"NiBa"}],"related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"2170"}]},"author":[{"first_name":"Jack","last_name":"Hearn","full_name":"Hearn, Jack"},{"full_name":"Stone, Graham","first_name":"Graham","last_name":"Stone"},{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton"},{"first_name":"Konrad","last_name":"Lohse","full_name":"Lohse, Konrad"},{"full_name":"Bunnefeld, Lynsey","last_name":"Bunnefeld","first_name":"Lynsey"}]},{"volume":87,"title":"Spinon-phonon interaction in algebraic spin liquids","status":"public","intvolume":"        87","day":"22","year":"2013","author":[{"orcid":"0000-0002-2399-5827","full_name":"Maksym Serbyn","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym"},{"full_name":"Lee, Patrick","last_name":"Lee","first_name":"Patrick"}],"acknowledgement":"M. S. is grateful to X.-G. Wen, L. Levitov, M. Metlitski, K. Michaeli, K.-T. Chen, and A. Potter for many useful discussions. We acknowledge support by Grant No. NSF DMR 1104498. We acknowledge the hospitality of KITP, where final stages of this project were completed.","quality_controlled":0,"date_created":"2018-12-11T11:49:30Z","citation":{"ama":"Serbyn M, Lee P. Spinon-phonon interaction in algebraic spin liquids. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2013;87(17). doi:<a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">10.1103/PhysRevB.87.174424</a>","short":"M. Serbyn, P. Lee, Physical Review B - Condensed Matter and Materials Physics 87 (2013).","chicago":"Serbyn, Maksym, and Patrick Lee. “Spinon-Phonon Interaction in Algebraic Spin Liquids.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2013. <a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">https://doi.org/10.1103/PhysRevB.87.174424</a>.","apa":"Serbyn, M., &#38; Lee, P. (2013). Spinon-phonon interaction in algebraic spin liquids. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">https://doi.org/10.1103/PhysRevB.87.174424</a>","mla":"Serbyn, Maksym, and Patrick Lee. “Spinon-Phonon Interaction in Algebraic Spin Liquids.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 87, no. 17, American Physical Society, 2013, doi:<a href=\"https://doi.org/10.1103/PhysRevB.87.174424\">10.1103/PhysRevB.87.174424</a>.","ieee":"M. Serbyn and P. Lee, “Spinon-phonon interaction in algebraic spin liquids,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 87, no. 17. American Physical Society, 2013.","ista":"Serbyn M, Lee P. 2013. Spinon-phonon interaction in algebraic spin liquids. Physical Review B - Condensed Matter and Materials Physics. 87(17)."},"doi":"10.1103/PhysRevB.87.174424","extern":1,"publication":"Physical Review B - Condensed Matter and Materials Physics","_id":"976","type":"journal_article","issue":"17","publication_status":"published","date_updated":"2021-01-12T08:22:22Z","publist_id":"6427","publisher":"American Physical Society","abstract":[{"text":"Motivated by a search for experimental probes to access the physics of fractionalized excitations called spinons in spin liquids, we study the interaction of spinons with lattice vibrations. We consider the case of algebraic spin liquid, when spinons have fermionic statistics and a Dirac-like dispersion. We establish the general procedure for deriving spinon-phonon interactions, which is based on symmetry considerations. The procedure is illustrated for four different algebraic spin liquids: π-flux and staggered-flux phases on a square lattice, π-flux phase on a kagome lattice, and zero-flux phase on a honeycomb lattice. Although the low-energy description is similar for all these phases, different underlying symmetry groups lead to a distinct form of spinon-phonon interaction Hamiltonian. The explicit form of the spinon-phonon interaction is used to estimate the attenuation of ultrasound in an algebraic spin liquid. The prospects of the sound attenuation as a probe of spinons are discussed.","lang":"eng"}],"oa":1,"date_published":"2013-05-22T00:00:00Z","month":"05","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1303.0772"}]},{"intvolume":"       200","language":[{"iso":"eng"}],"year":"2013","acknowledgement":"The authors thank Dr Christian Luschnig (University of Natural Resources and Life Sciences (BOKU), Vienna, Austria) for the anti-PIN2 antibody, Professor Mark Estelle (University of California, San Diego, CA, USA) for tir1-1 mutant seeds and, last but not least, to Dr David Morris for critical reading of the manuscript. We also thank Markéta Pařezová and Jana Stýblová for excellent technical assistance. This work was supported by the Grant Agency of the Czech Republic (P305/11/0797 to E.Z. and 13-40637S to J.F.), the Central European Institute of Technology project CZ.1.05/1.1.00/02.0068 from the European Regional Development Fund and by a European Research Council starting independent research grant ERC-2011-StG-20101109-PSDP (to J.F.).","ec_funded":1,"quality_controlled":"1","citation":{"ista":"Simon S, Kubeš M, Baster P, Robert S, Dobrev P, Friml J, Petrášek J, Zažímalová E. 2013. Defining the selectivity of processes along the auxin response chain: A study using auxin analogues. New Phytologist. 200(4), 1034–1048.","ieee":"S. Simon <i>et al.</i>, “Defining the selectivity of processes along the auxin response chain: A study using auxin analogues,” <i>New Phytologist</i>, vol. 200, no. 4. Wiley, pp. 1034–1048, 2013.","mla":"Simon, Sibu, et al. “Defining the Selectivity of Processes along the Auxin Response Chain: A Study Using Auxin Analogues.” <i>New Phytologist</i>, vol. 200, no. 4, Wiley, 2013, pp. 1034–48, doi:<a href=\"https://doi.org/10.1111/nph.12437\">10.1111/nph.12437</a>.","apa":"Simon, S., Kubeš, M., Baster, P., Robert, S., Dobrev, P., Friml, J., … Zažímalová, E. (2013). Defining the selectivity of processes along the auxin response chain: A study using auxin analogues. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.12437\">https://doi.org/10.1111/nph.12437</a>","short":"S. Simon, M. Kubeš, P. Baster, S. Robert, P. Dobrev, J. Friml, J. Petrášek, E. Zažímalová, New Phytologist 200 (2013) 1034–1048.","chicago":"Simon, Sibu, Martin Kubeš, Pawel Baster, Stéphanie Robert, Petre Dobrev, Jiří Friml, Jan Petrášek, and Eva Zažímalová. “Defining the Selectivity of Processes along the Auxin Response Chain: A Study Using Auxin Analogues.” <i>New Phytologist</i>. Wiley, 2013. <a href=\"https://doi.org/10.1111/nph.12437\">https://doi.org/10.1111/nph.12437</a>.","ama":"Simon S, Kubeš M, Baster P, et al. Defining the selectivity of processes along the auxin response chain: A study using auxin analogues. <i>New Phytologist</i>. 2013;200(4):1034-1048. doi:<a href=\"https://doi.org/10.1111/nph.12437\">10.1111/nph.12437</a>"},"doi":"10.1111/nph.12437","abstract":[{"lang":"eng","text":"The mode of action of auxin is based on its non-uniform distribution within tissues and organs. Despite the wide use of several auxin analogues in research and agriculture, little is known about the specificity of different auxin-related transport and signalling processes towards these compounds. Using seedlings of Arabidopsis thaliana and suspension-cultured cells of Nicotiana tabacum (BY-2), the physiological activity of several auxin analogues was investigated, together with their capacity to induce auxin-dependent gene expression, to inhibit endocytosis and to be transported across the plasma membrane. This study shows that the specificity criteria for different auxin-related processes vary widely. Notably, the special behaviour of some synthetic auxin analogues suggests that they might be useful tools in investigations of the molecular mechanism of auxin action. Thus, due to their differential stimulatory effects on DR5 expression, indole-3-propionic (IPA) and 2,4,5-trichlorophenoxy acetic (2,4,5-T) acids can serve in studies of TRANSPORT INHIBITOR RESPONSE 1/AUXIN SIGNALLING F-BOX (TIR1/AFB)-mediated auxin signalling, and 5-fluoroindole-3-acetic acid (5-F-IAA) can help to discriminate between transcriptional and non-transcriptional pathways of auxin signalling. The results demonstrate that the major determinants for the auxin-like physiological potential of a particular compound are very complex and involve its chemical and metabolic stability, its ability to distribute in tissues in a polar manner and its activity towards auxin signalling machinery."}],"oa":1,"ddc":["580"],"page":"1034 - 1048","status":"public","title":"Defining the selectivity of processes along the auxin response chain: A study using auxin analogues","volume":200,"day":"01","department":[{"_id":"JiFr"}],"author":[{"orcid":"0000-0002-1998-6741","full_name":"Simon, Sibu","last_name":"Simon","first_name":"Sibu","id":"4542EF9A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Martin","last_name":"Kubeš","full_name":"Kubeš, Martin"},{"last_name":"Baster","first_name":"Pawel","id":"3028BD74-F248-11E8-B48F-1D18A9856A87","full_name":"Baster, Pawel"},{"first_name":"Stéphanie","last_name":"Robert","full_name":"Robert, Stéphanie"},{"full_name":"Dobrev, Petre","first_name":"Petre","last_name":"Dobrev"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","last_name":"Friml","first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Petrášek, Jan","last_name":"Petrášek","first_name":"Jan"},{"full_name":"Zažímalová, Eva","first_name":"Eva","last_name":"Zažímalová"}],"publication":"New Phytologist","issue":"4","_id":"2443","article_processing_charge":"No","type":"journal_article","date_created":"2018-12-11T11:57:41Z","oa_version":"Published Version","project":[{"grant_number":"282300","call_identifier":"FP7","_id":"25716A02-B435-11E9-9278-68D0E5697425","name":"Polarity and subcellular dynamics in plants"}],"publist_id":"4460","date_updated":"2026-06-18T07:49:41Z","publisher":"Wiley","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","date_published":"2013-12-01T00:00:00Z","month":"12","das_tickbox":"1","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1111/nph.12437"}]},{"year":"2013","language":[{"iso":"eng"}],"arxiv":1,"intvolume":"      8044","ec_funded":1,"quality_controlled":"1","doi":"10.1007/978-3-642-39799-8_36","citation":{"mla":"Chatterjee, Krishnendu, and Jakub Ła̧Cki. <i>Faster Algorithms for Markov Decision Processes with Low Treewidth</i>. Vol. 8044, Springer, 2013, pp. 543–58, doi:<a href=\"https://doi.org/10.1007/978-3-642-39799-8_36\">10.1007/978-3-642-39799-8_36</a>.","ieee":"K. Chatterjee and J. Ła̧Cki, “Faster algorithms for Markov decision processes with low treewidth,” vol. 8044. Springer, pp. 543–558, 2013.","ista":"Chatterjee K, Ła̧Cki J. 2013. Faster algorithms for Markov decision processes with low treewidth. 8044, 543–558.","chicago":"Chatterjee, Krishnendu, and Jakub Ła̧Cki. “Faster Algorithms for Markov Decision Processes with Low Treewidth.” Lecture Notes in Computer Science. Springer, 2013. <a href=\"https://doi.org/10.1007/978-3-642-39799-8_36\">https://doi.org/10.1007/978-3-642-39799-8_36</a>.","short":"K. Chatterjee, J. Ła̧Cki, 8044 (2013) 543–558.","apa":"Chatterjee, K., &#38; Ła̧Cki, J. (2013). Faster algorithms for Markov decision processes with low treewidth. Presented at the CAV: Computer Aided Verification, St. Petersburg, Russia: Springer. <a href=\"https://doi.org/10.1007/978-3-642-39799-8_36\">https://doi.org/10.1007/978-3-642-39799-8_36</a>","ama":"Chatterjee K, Ła̧Cki J. Faster algorithms for Markov decision processes with low treewidth. 2013;8044:543-558. doi:<a href=\"https://doi.org/10.1007/978-3-642-39799-8_36\">10.1007/978-3-642-39799-8_36</a>"},"conference":{"start_date":"2013-07-13","end_date":"2013-07-19","location":"St. Petersburg, Russia","name":"CAV: Computer Aided Verification"},"abstract":[{"lang":"eng","text":"We consider two core algorithmic problems for probabilistic verification: the maximal end-component decomposition and the almost-sure reachability set computation for Markov decision processes (MDPs). For MDPs with treewidth k, we present two improved static algorithms for both the problems that run in time O(n·k 2.38·2k ) and O(m·logn· k), respectively, where n is the number of states and m is the number of edges, significantly improving the previous known O(n·k·√n· k) bound for low treewidth. We also present decremental algorithms for both problems for MDPs with constant treewidth that run in amortized logarithmic time, which is a huge improvement over the previously known algorithms that require amortized linear time."}],"oa":1,"ddc":["000"],"page":"543 - 558","alternative_title":["LNCS"],"external_id":{"arxiv":["1304.0084"]},"day":"01","volume":8044,"title":"Faster algorithms for Markov decision processes with low treewidth","status":"public","oa_version":"Preprint","date_created":"2018-12-11T11:57:42Z","project":[{"_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","call_identifier":"FWF","grant_number":"P 23499-N23"},{"call_identifier":"FWF","grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory"},{"call_identifier":"FP7","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"_id":"2444","article_processing_charge":"No","type":"conference","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"first_name":"Jakub","last_name":"Ła̧Cki","full_name":"Ła̧Cki, Jakub"}],"department":[{"_id":"KrCh"}],"date_published":"2013-07-01T00:00:00Z","month":"07","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-06-18T07:50:03Z","publist_id":"4459","publisher":"Springer","main_file_link":[{"url":"http://arxiv.org/abs/1304.0084","open_access":"1"}],"scopus_import":"1","series_title":"Lecture Notes in Computer Science","das_tickbox":"1"},{"doi":"10.1007/978-1-4419-9863-7_604","citation":{"ama":"Quadrianto N, Lampert C. Kernel based learning. In: Dubitzky W, Wolkenhauer O, Cho K, Yokota H, eds. <i>Encyclopedia of Systems Biology</i>. Vol 3. Springer; 2013:1069-1069. doi:<a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">10.1007/978-1-4419-9863-7_604</a>","chicago":"Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” In <i>Encyclopedia of Systems Biology</i>, edited by Werner Dubitzky, Olaf Wolkenhauer, Kwang Cho, and Hiroki Yokota, 3:1069–1069. Springer, 2013. <a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">https://doi.org/10.1007/978-1-4419-9863-7_604</a>.","short":"N. Quadrianto, C. Lampert, in:, W. Dubitzky, O. Wolkenhauer, K. Cho, H. Yokota (Eds.), Encyclopedia of Systems Biology, Springer, 2013, pp. 1069–1069.","apa":"Quadrianto, N., &#38; Lampert, C. (2013). Kernel based learning. In W. Dubitzky, O. Wolkenhauer, K. Cho, &#38; H. Yokota (Eds.), <i>Encyclopedia of Systems Biology</i> (Vol. 3, pp. 1069–1069). Springer. <a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">https://doi.org/10.1007/978-1-4419-9863-7_604</a>","mla":"Quadrianto, Novi, and Christoph Lampert. “Kernel Based Learning.” <i>Encyclopedia of Systems Biology</i>, edited by Werner Dubitzky et al., vol. 3, Springer, 2013, pp. 1069–1069, doi:<a href=\"https://doi.org/10.1007/978-1-4419-9863-7_604\">10.1007/978-1-4419-9863-7_604</a>.","ista":"Quadrianto N, Lampert C. 2013.Kernel based learning. In: Encyclopedia of Systems Biology. vol. 3, 1069–1069.","ieee":"N. Quadrianto and C. Lampert, “Kernel based learning,” in <i>Encyclopedia of Systems Biology</i>, vol. 3, W. Dubitzky, O. Wolkenhauer, K. Cho, and H. Yokota, Eds. Springer, 2013, pp. 1069–1069."},"date_created":"2018-12-11T12:02:39Z","quality_controlled":"1","oa_version":"None","type":"encyclopedia_article","_id":"3321","publication":"Encyclopedia of Systems Biology","author":[{"full_name":"Quadrianto, Novi","last_name":"Quadrianto","first_name":"Novi"},{"orcid":"0000-0001-8622-7887","full_name":"Lampert, Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","last_name":"Lampert"}],"department":[{"_id":"ChLa"}],"day":"01","year":"2013","language":[{"iso":"eng"}],"title":"Kernel based learning","volume":3,"status":"public","intvolume":"         3","editor":[{"full_name":"Dubitzky, Werner","first_name":"Werner","last_name":"Dubitzky"},{"first_name":"Olaf","last_name":"Wolkenhauer","full_name":"Wolkenhauer, Olaf"},{"last_name":"Cho","first_name":"Kwang","full_name":"Cho, Kwang"},{"full_name":"Yokota, Hiroki","first_name":"Hiroki","last_name":"Yokota"}],"page":"1069 - 1069","date_published":"2013-01-01T00:00:00Z","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"Springer","date_updated":"2021-01-12T07:42:38Z","publist_id":"3314"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"American Chemical Society","publist_id":"7482","date_updated":"2021-01-12T07:43:21Z","abstract":[{"text":"Morphology is a key parameter in the design of novel nanocrystals and nanomaterials with controlled functional properties. Here, we demonstrate the potential of foreign metal ions to tune the morphology of colloidal semiconductor nanoparticles. We illustrate the underlying mechanism by preparing copper selenide nanocubes in the presence of Al ions. We further characterize the plasmonic properties of the obtained nanocrystals and demonstrate their potential as a platform to produce cubic nanoparticles with different composition by cation exchange. © 2013 American Chemical Society.","lang":"eng"}],"date_published":"2013-03-07T00:00:00Z","month":"03","article_type":"original","page":"4664 - 4667","volume":135,"title":"Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes","status":"public","intvolume":"       135","day":"07","year":"2013","language":[{"iso":"eng"}],"author":[{"last_name":"Li","first_name":"Wenhua","full_name":"Li, Wenhua"},{"full_name":"Zamani, Reza","last_name":"Zamani","first_name":"Reza"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cadavid, Doris","first_name":"Doris","last_name":"Cadavid"},{"full_name":"Shavel, Alexey","last_name":"Shavel","first_name":"Alexey"},{"full_name":"Morante, Joan","first_name":"Joan","last_name":"Morante"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"full_name":"Cabot, Andreu","first_name":"Andreu","last_name":"Cabot"}],"acknowledgement":"The research was supported by the European Regional Development Funds. M.I. thanks the Spanish MICINN for her Ph.D. grant. J.A. and R.Z. also acknowledge MAT2010-15138.","doi":"10.1021/ja400472m","citation":{"mla":"Li, Wenhua, et al. “Metal Ions to Control the Morphology of Semiconductor Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 12, American Chemical Society, 2013, pp. 4664–67, doi:<a href=\"https://doi.org/10.1021/ja400472m\">10.1021/ja400472m</a>.","ista":"Li W, Zamani R, Ibáñez M, Cadavid D, Shavel A, Morante J, Arbiol J, Cabot A. 2013. Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes. Journal of the American Chemical Society. 135(12), 4664–4667.","ieee":"W. Li <i>et al.</i>, “Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 12. American Chemical Society, pp. 4664–4667, 2013.","short":"W. Li, R. Zamani, M. Ibáñez, D. Cadavid, A. Shavel, J. Morante, J. Arbiol, A. Cabot, Journal of the American Chemical Society 135 (2013) 4664–4667.","chicago":"Li, Wenhua, Reza Zamani, Maria Ibáñez, Doris Cadavid, Alexey Shavel, Joan Morante, Jordi Arbiol, and Andreu Cabot. “Metal Ions to Control the Morphology of Semiconductor Nanoparticles: Copper Selenide Nanocubes.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/ja400472m\">https://doi.org/10.1021/ja400472m</a>.","apa":"Li, W., Zamani, R., Ibáñez, M., Cadavid, D., Shavel, A., Morante, J., … Cabot, A. (2013). Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja400472m\">https://doi.org/10.1021/ja400472m</a>","ama":"Li W, Zamani R, Ibáñez M, et al. Metal ions to control the morphology of semiconductor nanoparticles: Copper selenide nanocubes. <i>Journal of the American Chemical Society</i>. 2013;135(12):4664-4667. doi:<a href=\"https://doi.org/10.1021/ja400472m\">10.1021/ja400472m</a>"},"oa_version":"None","quality_controlled":"1","date_created":"2018-12-11T11:45:55Z","issue":"12","_id":"342","type":"journal_article","article_processing_charge":"No","extern":"1","publication":"Journal of the American Chemical Society"},{"publist_id":"7483","date_updated":"2021-01-12T07:43:25Z","publisher":"American Chemical Society","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","date_published":"2013-02-28T00:00:00Z","month":"02","abstract":[{"text":"The bottom-up assembly of nanocrystals provides access to a three-dimensional composition control at the nanoscale not attainable by any other technology. In particular, colloidal nanoheterostructures, with intrinsic multiphase organization, are especially appealing building blocks for the bottom-up production of nanocomposites. In the present work, we use PbTe-PbS as the model material system and thermoelectricity as the paradigmatic application to investigate the potential of the bottom-up assembly of core-shell nanoparticles to produce functional nanocomposites. With this goal in mind, a rapid, high-yield and scalable colloidal synthetic route to prepare grams of PbTe@PbS core-shell nanoparticles with unprecedented narrow size distributions and exceptional composition control is detailed. PbTe@PbS nanoparticles were used as building blocks for the bottom-up production of PbTe-PbS nanocomposites with tuned composition. In such PbTe-PbS nanocomposites, synergistic nanocrystal doping effects result in up to 10-fold higher electrical conductivities than in pure PbTe and PbS nanomaterials. At the same time, the acoustic impedance mismatch between PbTe and PbS phases and a partial phase alloying provide PbTe-PbS nanocomposites with strongly reduced thermal conductivities. As a result, record thermoelectric figures of merit (ZT) of ∼1.1 were obtained from undoped PbTe and PbS phases at 710 K. These high ZT values prove the potential of the proposed processes to produce efficient functional nanomaterials with programmable properties. © 2013 American Chemical Society.","lang":"eng"}],"page":"2573 - 2586","status":"public","intvolume":"         7","title":"Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties","volume":7,"language":[{"iso":"eng"}],"day":"28","year":"2013","acknowledgement":"The research was supported by the European Regional Development Funds (ERDF, “FEDER Programa Competitivitat de Catalunya 2007-2013”) and the Spanish MICINN Projects MAT2008-05779, MAT2010-15138, CSD2009-00050, and CSD2009-00013. M.I. thanks the Spanish MICINN for her Ph.D. grant. J.A. and R.Z. also acknowledge Generalitat de Catalunya 2009-SGR-770 and XaRMAE.\r\n\r\nThe authors declare no competing financial interest.","author":[{"orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez"},{"full_name":"Zamani, Reza","last_name":"Zamani","first_name":"Reza"},{"full_name":"Gorsse, Stéphane","first_name":"Stéphane","last_name":"Gorsse"},{"first_name":"Jiandong","last_name":"Fan","full_name":"Fan, Jiandong"},{"first_name":"Silvia","last_name":"Ortega","full_name":"Ortega, Silvia"},{"last_name":"Cadavid","first_name":"Doris","full_name":"Cadavid, Doris"},{"full_name":"Morante, Joan","first_name":"Joan","last_name":"Morante"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"publication":"ACS Nano","extern":"1","_id":"343","issue":"3","article_processing_charge":"No","type":"journal_article","date_created":"2018-12-11T11:45:55Z","oa_version":"None","quality_controlled":"1","doi":"10.1021/nn305971v","citation":{"short":"M. Ibáñez, R. Zamani, S. Gorsse, J. Fan, S. Ortega, D. Cadavid, J. Morante, J. Arbiol, A. Cabot, ACS Nano 7 (2013) 2573–2586.","chicago":"Ibáñez, Maria, Reza Zamani, Stéphane Gorsse, Jiandong Fan, Silvia Ortega, Doris Cadavid, Joan Morante, Jordi Arbiol, and Andreu Cabot. “Core Shell Nanoparticles as Building Blocks for the Bottom-up Production of Functional Nanocomposites: PbTe PbS Thermoelectric Properties.” <i>ACS Nano</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/nn305971v\">https://doi.org/10.1021/nn305971v</a>.","apa":"Ibáñez, M., Zamani, R., Gorsse, S., Fan, J., Ortega, S., Cadavid, D., … Cabot, A. (2013). Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nn305971v\">https://doi.org/10.1021/nn305971v</a>","mla":"Ibáñez, Maria, et al. “Core Shell Nanoparticles as Building Blocks for the Bottom-up Production of Functional Nanocomposites: PbTe PbS Thermoelectric Properties.” <i>ACS Nano</i>, vol. 7, no. 3, American Chemical Society, 2013, pp. 2573–86, doi:<a href=\"https://doi.org/10.1021/nn305971v\">10.1021/nn305971v</a>.","ieee":"M. Ibáñez <i>et al.</i>, “Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties,” <i>ACS Nano</i>, vol. 7, no. 3. American Chemical Society, pp. 2573–2586, 2013.","ista":"Ibáñez M, Zamani R, Gorsse S, Fan J, Ortega S, Cadavid D, Morante J, Arbiol J, Cabot A. 2013. Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties. ACS Nano. 7(3), 2573–2586.","ama":"Ibáñez M, Zamani R, Gorsse S, et al. Core shell nanoparticles as building blocks for the bottom-up production of functional nanocomposites: PbTe PbS thermoelectric properties. <i>ACS Nano</i>. 2013;7(3):2573-2586. doi:<a href=\"https://doi.org/10.1021/nn305971v\">10.1021/nn305971v</a>"}},{"author":[{"orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"},{"last_name":"Cadavid","first_name":"Doris","full_name":"Cadavid, Doris"},{"last_name":"Anselmi Tamburini","first_name":"Umberto","full_name":"Anselmi Tamburini, Umberto"},{"last_name":"Zamani","first_name":"Reza","full_name":"Zamani, Reza"},{"first_name":"Stéphane","last_name":"Gorsse","full_name":"Gorsse, Stéphane"},{"full_name":"Li, Wenhua","first_name":"Wenhua","last_name":"Li"},{"first_name":"Antonio","last_name":"López","full_name":"López, Antonio"},{"full_name":"Morante, Joan","last_name":"Morante","first_name":"Joan"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"full_name":"Cabot, Andreu","first_name":"Andreu","last_name":"Cabot"}],"publication":"Journal of Materials Chemistry A","type":"journal_article","_id":"344","article_processing_charge":"No","issue":"4","oa_version":"Submitted Version","date_created":"2018-12-11T11:45:56Z","status":"public","volume":1,"title":"Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals","day":"28","main_file_link":[{"url":"https://hal.archives-ouvertes.fr/hal-00917429/","open_access":"1"}],"publist_id":"7484","date_updated":"2021-01-12T07:43:28Z","publisher":"Royal Society of Chemistry","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","date_published":"2013-01-28T00:00:00Z","month":"01","extern":"1","quality_controlled":"1","citation":{"mla":"Ibáñez, Maria, et al. “Colloidal Synthesis and Thermoelectric Properties of Cu 2SnSe3 Nanocrystals.” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 4, Royal Society of Chemistry, 2013, pp. 1421–26, doi:<a href=\"https://doi.org/10.1039/C2TA00419D\">10.1039/C2TA00419D</a>.","ista":"Ibáñez M, Cadavid D, Anselmi Tamburini U, Zamani R, Gorsse S, Li W, López A, Morante J, Arbiol J, Cabot A. 2013. Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals. Journal of Materials Chemistry A. 1(4), 1421–1426.","ieee":"M. Ibáñez <i>et al.</i>, “Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals,” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 4. Royal Society of Chemistry, pp. 1421–1426, 2013.","chicago":"Ibáñez, Maria, Doris Cadavid, Umberto Anselmi Tamburini, Reza Zamani, Stéphane Gorsse, Wenhua Li, Antonio López, Joan Morante, Jordi Arbiol, and Andreu Cabot. “Colloidal Synthesis and Thermoelectric Properties of Cu 2SnSe3 Nanocrystals.” <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/C2TA00419D\">https://doi.org/10.1039/C2TA00419D</a>.","short":"M. Ibáñez, D. Cadavid, U. Anselmi Tamburini, R. Zamani, S. Gorsse, W. Li, A. López, J. Morante, J. Arbiol, A. Cabot, Journal of Materials Chemistry A 1 (2013) 1421–1426.","apa":"Ibáñez, M., Cadavid, D., Anselmi Tamburini, U., Zamani, R., Gorsse, S., Li, W., … Cabot, A. (2013). Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals. <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/C2TA00419D\">https://doi.org/10.1039/C2TA00419D</a>","ama":"Ibáñez M, Cadavid D, Anselmi Tamburini U, et al. Colloidal synthesis and thermoelectric properties of Cu 2SnSe3 nanocrystals. <i>Journal of Materials Chemistry A</i>. 2013;1(4):1421-1426. doi:<a href=\"https://doi.org/10.1039/C2TA00419D\">10.1039/C2TA00419D</a>"},"doi":"10.1039/C2TA00419D","intvolume":"         1","language":[{"iso":"eng"}],"year":"2013","page":"1421 - 1426","abstract":[{"lang":"eng","text":"Copper-based selenides are attracting increasing interest due to their outstanding optoelectronic and thermoelectric properties. Herein a novel colloidal synthetic route to prepare Cu2SnSe3 nanocrystals with controlled size, shape and composition is presented. The high yield of the developed procedure allowed its up-scaling to the production of grams of colloidal Cu2SnSe3 nanocrystals. These nanocrystals were used as building blocks for the production of Cu2SnSe3 bulk nanostructured materials by spark plasma sintering. The thermoelectric properties of the prepared nanocrystalline Cu2SnSe3 pellets were characterized in the temperature range from 300 to 720 K. The obtained results show the bottom-up production of nanocrystalline materials from solution-processed nanocrystals to be a potentially advantageous alternative to conventional methods of production of efficient thermoelectric materials."}],"oa":1},{"article_type":"original","date_published":"2013-10-30T00:00:00Z","month":"10","abstract":[{"lang":"eng","text":"A multistrategy approach to overcome the main challenges of nanoparticle-based solution-processed Cu2ZnSnSe4 thin film solar cells is presented. We developed an efficient ligand exchange strategy, using an antimony salt, to displace organic ligands from the surface of Cu 2ZnSnS4 nanoparticles. An automated pulsed spray-deposition system was used to deposit the nanoparticles into homogeneous and crack-free films with controlled thickness. After annealing the film in a Se-rich atmosphere, carbon-free and crystalline Cu2ZnSnSe4 absorber layers were obtained. Not only was crystallization promoted by the complete removal of organics, but also Sb itself played a critical role. The Sb-assisted crystal growth is associated with the formation of a Sb-based compound at the grain boundaries, which locally reduces the melting point, thus promoting the film diffusion-limited crystallization. "}],"publist_id":"7479","date_updated":"2021-01-12T07:43:57Z","publisher":"American Chemical Society","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"15982 - 15985","language":[{"iso":"eng"}],"year":"2013","day":"30","status":"public","intvolume":"       135","title":"Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells","volume":135,"publication":"Journal of the American Chemical Society","extern":"1","issue":"43","_id":"351","type":"journal_article","article_processing_charge":"No","date_created":"2018-12-11T11:45:58Z","oa_version":"None","quality_controlled":"1","citation":{"chicago":"Carrete, Alex, Alexey Shavel, Xavier Fontané, Joana Montserrat, Jiandong Fan, Maria Ibáñez, Edgardo Saucedo, Alejandro Pérez Rodríguez, and Andreu Cabot. “Antimony-Based Ligand Exchange to Promote Crystallization in Spray-Deposited Cu2ZnSnSe4 Solar Cells.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/ja4068639\">https://doi.org/10.1021/ja4068639</a>.","short":"A. Carrete, A. Shavel, X. Fontané, J. Montserrat, J. Fan, M. Ibáñez, E. Saucedo, A. Pérez Rodríguez, A. Cabot, Journal of the American Chemical Society 135 (2013) 15982–15985.","apa":"Carrete, A., Shavel, A., Fontané, X., Montserrat, J., Fan, J., Ibáñez, M., … Cabot, A. (2013). Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja4068639\">https://doi.org/10.1021/ja4068639</a>","mla":"Carrete, Alex, et al. “Antimony-Based Ligand Exchange to Promote Crystallization in Spray-Deposited Cu2ZnSnSe4 Solar Cells.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 43, American Chemical Society, 2013, pp. 15982–85, doi:<a href=\"https://doi.org/10.1021/ja4068639\">10.1021/ja4068639</a>.","ista":"Carrete A, Shavel A, Fontané X, Montserrat J, Fan J, Ibáñez M, Saucedo E, Pérez Rodríguez A, Cabot A. 2013. Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells. Journal of the American Chemical Society. 135(43), 15982–15985.","ieee":"A. Carrete <i>et al.</i>, “Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 43. American Chemical Society, pp. 15982–15985, 2013.","ama":"Carrete A, Shavel A, Fontané X, et al. Antimony-based ligand exchange to promote crystallization in spray-deposited Cu2ZnSnSe4 solar cells. <i>Journal of the American Chemical Society</i>. 2013;135(43):15982-15985. doi:<a href=\"https://doi.org/10.1021/ja4068639\">10.1021/ja4068639</a>"},"doi":"10.1021/ja4068639","acknowledgement":"This work was supported by the European Regional Development Funds and the Framework 7 program under project SCALENANO (FP7-NMP-ENERGY-2011-284486). E.S. thanks the Spanish government for the “Ramon y Cajal” fellowship (RYC-2011-09212).","author":[{"last_name":"Carrete","first_name":"Alex","full_name":"Carrete, Alex"},{"first_name":"Alexey","last_name":"Shavel","full_name":"Shavel, Alexey"},{"full_name":"Fontané, Xavier","first_name":"Xavier","last_name":"Fontané"},{"full_name":"Montserrat, Joana","last_name":"Montserrat","first_name":"Joana"},{"last_name":"Fan","first_name":"Jiandong","full_name":"Fan, Jiandong"},{"orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez"},{"last_name":"Saucedo","first_name":"Edgardo","full_name":"Saucedo, Edgardo"},{"first_name":"Alejandro","last_name":"Pérez Rodríguez","full_name":"Pérez Rodríguez, Alejandro"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}]},{"page":"4864 - 4870","month":"02","date_published":"2013-02-13T00:00:00Z","article_type":"original","abstract":[{"text":"The presence of organic ligands on the surface of colloidal nanoparticles strongly limits their performance in technological applications where charge carrier transfer/transport plays an important role. We use metal salts, matched with the nanoparticle composition, to eliminate the surface organic ligands without introducing extrinsic impurities in the final nanomaterial. The potential of the simple, general and scalable processes presented here is demonstrated by characterizing the thermoelectric properties of nanostructured Ag2Te produced by the bottom up assembly of Ag2Te nanocrystals. A 6-fold increase of the thermoelectric figure of merit of Ag2Te was obtained when organic ligands were displaced by AgNO3. The same procedure can enhance the performance of nanocrystals and nanocrystal-based devices in a broad range of applications, from photovoltaics and thermoelectrics to catalysis.","lang":"eng"}],"publisher":"Royal Society of Chemistry","publist_id":"7481","date_updated":"2021-01-12T07:44:02Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","article_processing_charge":"No","_id":"352","type":"journal_article","issue":"15","extern":"1","publication":"Journal of Materials Chemistry A","citation":{"ama":"Cadavid D, Ibáñez M, Shavel A, Durá O, López De La Torre M, Cabot A. Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te. <i>Journal of Materials Chemistry A</i>. 2013;1(15):4864-4870. doi:<a href=\"https://doi.org/10.1039/C3TA01455J\">10.1039/C3TA01455J</a>","ista":"Cadavid D, Ibáñez M, Shavel A, Durá O, López De La Torre M, Cabot A. 2013. Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te. Journal of Materials Chemistry A. 1(15), 4864–4870.","ieee":"D. Cadavid, M. Ibáñez, A. Shavel, O. Durá, M. López De La Torre, and A. Cabot, “Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te,” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 15. Royal Society of Chemistry, pp. 4864–4870, 2013.","mla":"Cadavid, Doris, et al. “Organic Ligand Displacement by Metal Salts to Enhance Nanoparticle Functionality: Thermoelectric Properties of Ag Inf 2 Inf Te.” <i>Journal of Materials Chemistry A</i>, vol. 1, no. 15, Royal Society of Chemistry, 2013, pp. 4864–70, doi:<a href=\"https://doi.org/10.1039/C3TA01455J\">10.1039/C3TA01455J</a>.","apa":"Cadavid, D., Ibáñez, M., Shavel, A., Durá, O., López De La Torre, M., &#38; Cabot, A. (2013). Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te. <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/C3TA01455J\">https://doi.org/10.1039/C3TA01455J</a>","chicago":"Cadavid, Doris, Maria Ibáñez, Alexey Shavel, Oscar Durá, Marco López De La Torre, and Andreu Cabot. “Organic Ligand Displacement by Metal Salts to Enhance Nanoparticle Functionality: Thermoelectric Properties of Ag Inf 2 Inf Te.” <i>Journal of Materials Chemistry A</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/C3TA01455J\">https://doi.org/10.1039/C3TA01455J</a>.","short":"D. Cadavid, M. Ibáñez, A. Shavel, O. Durá, M. López De La Torre, A. Cabot, Journal of Materials Chemistry A 1 (2013) 4864–4870."},"doi":"10.1039/C3TA01455J","date_created":"2018-12-11T11:45:58Z","oa_version":"None","quality_controlled":"1","author":[{"first_name":"Doris","last_name":"Cadavid","full_name":"Cadavid, Doris"},{"first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria"},{"last_name":"Shavel","first_name":"Alexey","full_name":"Shavel, Alexey"},{"full_name":"Durá, Oscar","first_name":"Oscar","last_name":"Durá"},{"first_name":"Marco","last_name":"López De La Torre","full_name":"López De La Torre, Marco"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"language":[{"iso":"eng"}],"day":"13","year":"2013","status":"public","intvolume":"         1","volume":1,"title":"Organic ligand displacement by metal salts to enhance nanoparticle functionality: Thermoelectric properties of Ag inf 2 inf Te"},{"date_published":"2013-04-30T00:00:00Z","month":"04","article_type":"original","abstract":[{"text":"We report a procedure to prepare highly monodisperse copper telluride nanocubes, nanoplates, and nanorods. The procedure is based on the reaction of a copper salt with trioctylphosphine telluride in the presence of lithium bis(trimethylsilyl)amide and oleylamine. CuTe nanocrystals display a strong near-infrared optical absorption associated with localized surface plasmon resonances. We exploit this plasmon resonance for the design of surface-enhanced Raman scattering sensors for unconventional optical probes. Furthermore, we also report here our preliminary analysis of the use of CuTe nanocrystals as cytotoxic and photothermal agents.","lang":"eng"}],"publisher":"American Chemical Society","date_updated":"2021-01-12T07:44:06Z","publist_id":"7480","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","page":"7098 - 7101","language":[{"iso":"eng"}],"year":"2013","day":"30","intvolume":"       135","status":"public","volume":135,"title":"CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents","issue":"19","_id":"353","article_processing_charge":"No","type":"journal_article","publication":"Journal of the American Chemical Society","extern":"1","doi":"10.1021/ja401428e","citation":{"ama":"Li W, Zamani R, Rivera Gil P, et al. CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents. <i>Journal of the American Chemical Society</i>. 2013;135(19):7098-7101. doi:<a href=\"https://doi.org/10.1021/ja401428e\">10.1021/ja401428e</a>","apa":"Li, W., Zamani, R., Rivera Gil, P., Pelaz, B., Ibáñez, M., Cadavid, D., … Cabot, A. (2013). CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja401428e\">https://doi.org/10.1021/ja401428e</a>","chicago":"Li, Wenhua, Reza Zamani, Pilar Rivera Gil, Beatriz Pelaz, Maria Ibáñez, Doris Cadavid, Alexey Shavel, et al. “CuTe Nanocrystals: Shape and Size Control, Plasmonic Properties, and Use as SERS Probes and Photothermal Agents.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2013. <a href=\"https://doi.org/10.1021/ja401428e\">https://doi.org/10.1021/ja401428e</a>.","short":"W. Li, R. Zamani, P. Rivera Gil, B. Pelaz, M. Ibáñez, D. Cadavid, A. Shavel, R. Alvarez Puebla, W. Parak, J. Arbiol, A. Cabot, Journal of the American Chemical Society 135 (2013) 7098–7101.","ieee":"W. Li <i>et al.</i>, “CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 19. American Chemical Society, pp. 7098–7101, 2013.","ista":"Li W, Zamani R, Rivera Gil P, Pelaz B, Ibáñez M, Cadavid D, Shavel A, Alvarez Puebla R, Parak W, Arbiol J, Cabot A. 2013. CuTe nanocrystals: Shape and size control, plasmonic properties, and use as SERS probes and photothermal agents. Journal of the American Chemical Society. 135(19), 7098–7101.","mla":"Li, Wenhua, et al. “CuTe Nanocrystals: Shape and Size Control, Plasmonic Properties, and Use as SERS Probes and Photothermal Agents.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 19, American Chemical Society, 2013, pp. 7098–101, doi:<a href=\"https://doi.org/10.1021/ja401428e\">10.1021/ja401428e</a>."},"quality_controlled":"1","date_created":"2018-12-11T11:45:59Z","oa_version":"None","acknowledgement":"This research was supported by the European Regional Development Funds. J.A. and R.Z. acknowledge MAT2010-15138. Part of this work was supported by HFSP grant RGP0052/2012 to W.J.P.","author":[{"last_name":"Li","first_name":"Wenhua","full_name":"Li, Wenhua"},{"first_name":"Reza","last_name":"Zamani","full_name":"Zamani, Reza"},{"full_name":"Rivera Gil, Pilar","first_name":"Pilar","last_name":"Rivera Gil"},{"full_name":"Pelaz, Beatriz","last_name":"Pelaz","first_name":"Beatriz"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Cadavid","first_name":"Doris","full_name":"Cadavid, Doris"},{"full_name":"Shavel, Alexey","last_name":"Shavel","first_name":"Alexey"},{"first_name":"Ramon","last_name":"Alvarez Puebla","full_name":"Alvarez Puebla, Ramon"},{"first_name":"Wolfgang","last_name":"Parak","full_name":"Parak, Wolfgang"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}]},{"page":"8966 - 8971","publisher":"Royal Society of Chemistry","publist_id":"7453","date_updated":"2021-01-12T07:52:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_published":"2013-09-23T00:00:00Z","month":"09","abstract":[{"text":"The compositional versatility of I2–II–IV–VI4 tetrahedrally-coordinated compounds allows for accommodating their functional properties to numerous technological applications. Among them, Cu2ZnSnSe4 is an emerging photovoltaic material and Cu2CdSnSe4 displays excellent thermoelectric properties. The third compound of this family, Cu2HgSnSe4, remains relatively unexplored. Herein, a synthetic route to produce Cu2HgSnSe4 nanoparticles with narrow size distribution and controlled composition is presented. Cu2HgSnSe4 nanoparticles were subsequently used as building blocks to produce bulk nanocrystalline materials, whose thermoelectric properties were analyzed. A very preliminary adjustment of the material composition yielded Seebeck coefficients up to 160 μV K−1, electrical conductivities close to 104 S m−1 and thermal conductivities down to 0.5 W m−1 K−1.","lang":"eng"}],"author":[{"full_name":"Li, Wenhua","first_name":"Wenhua","last_name":"Li"},{"orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","last_name":"Ibáñez","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"},{"full_name":"Zamani, Reza","first_name":"Reza","last_name":"Zamani"},{"full_name":"García Castelló, Nuria","last_name":"García Castelló","first_name":"Nuria"},{"full_name":"Stéphane, Grosse","first_name":"Grosse","last_name":"Stéphane"},{"first_name":"Doris","last_name":"Cadavid","full_name":"Cadavid, Doris"},{"full_name":"Prades, Joan","first_name":"Joan","last_name":"Prades"},{"first_name":"Jordi","last_name":"Arbiol","full_name":"Arbiol, Jordi"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"type":"journal_article","_id":"376","publication":"CrystEngComm","extern":"1","doi":"10.1039/C3CE41583J","citation":{"ama":"Li W, Ibáñez M, Zamani R, et al. Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties. <i>CrystEngComm</i>. 2013;44:8966-8971. doi:<a href=\"https://doi.org/10.1039/C3CE41583J\">10.1039/C3CE41583J</a>","mla":"Li, Wenhua, et al. “Cu2HgSnSe4 Nanoparticles: Synthesis and Thermoelectric Properties.” <i>CrystEngComm</i>, vol. 44, Royal Society of Chemistry, 2013, pp. 8966–71, doi:<a href=\"https://doi.org/10.1039/C3CE41583J\">10.1039/C3CE41583J</a>.","ista":"Li W, Ibáñez M, Zamani R, García Castelló N, Stéphane G, Cadavid D, Prades J, Arbiol J, Cabot A. 2013. Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties. CrystEngComm. 44, 8966–8971.","ieee":"W. Li <i>et al.</i>, “Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties,” <i>CrystEngComm</i>, vol. 44. Royal Society of Chemistry, pp. 8966–8971, 2013.","short":"W. Li, M. Ibáñez, R. Zamani, N. García Castelló, G. Stéphane, D. Cadavid, J. Prades, J. Arbiol, A. Cabot, CrystEngComm 44 (2013) 8966–8971.","chicago":"Li, Wenhua, Maria Ibáñez, Reza Zamani, Nuria García Castelló, Grosse Stéphane, Doris Cadavid, Joan Prades, Jordi Arbiol, and Andreu Cabot. “Cu2HgSnSe4 Nanoparticles: Synthesis and Thermoelectric Properties.” <i>CrystEngComm</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/C3CE41583J\">https://doi.org/10.1039/C3CE41583J</a>.","apa":"Li, W., Ibáñez, M., Zamani, R., García Castelló, N., Stéphane, G., Cadavid, D., … Cabot, A. (2013). Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties. <i>CrystEngComm</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/C3CE41583J\">https://doi.org/10.1039/C3CE41583J</a>"},"date_created":"2018-12-11T11:46:07Z","quality_controlled":"1","oa_version":"None","intvolume":"        44","status":"public","volume":44,"title":"Cu2HgSnSe4 nanoparticles: synthesis and thermoelectric properties","language":[{"iso":"eng"}],"day":"23","year":"2013"},{"language":[{"iso":"eng"}],"year":"2013","day":"24","intvolume":"       340","status":"public","title":"All change for nanocrystals","volume":340,"_id":"378","article_processing_charge":"No","issue":"6135","type":"journal_article","extern":"1","publication":"Science","citation":{"ama":"Ibáñez M, Cabot A. All change for nanocrystals. <i>Science</i>. 2013;340(6135):935-936. doi:<a href=\"https://doi.org/10.1126/science.1239221\">10.1126/science.1239221</a>","ista":"Ibáñez M, Cabot A. 2013. All change for nanocrystals. Science. 340(6135), 935–936.","ieee":"M. Ibáñez and A. Cabot, “All change for nanocrystals,” <i>Science</i>, vol. 340, no. 6135. American Association for the Advancement of Science, pp. 935–936, 2013.","mla":"Ibáñez, Maria, and Andreu Cabot. “All Change for Nanocrystals.” <i>Science</i>, vol. 340, no. 6135, American Association for the Advancement of Science, 2013, pp. 935–36, doi:<a href=\"https://doi.org/10.1126/science.1239221\">10.1126/science.1239221</a>.","apa":"Ibáñez, M., &#38; Cabot, A. (2013). All change for nanocrystals. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1239221\">https://doi.org/10.1126/science.1239221</a>","short":"M. Ibáñez, A. Cabot, Science 340 (2013) 935–936.","chicago":"Ibáñez, Maria, and Andreu Cabot. “All Change for Nanocrystals.” <i>Science</i>. American Association for the Advancement of Science, 2013. <a href=\"https://doi.org/10.1126/science.1239221\">https://doi.org/10.1126/science.1239221</a>."},"doi":"10.1126/science.1239221","oa_version":"None","date_created":"2018-12-11T11:46:08Z","author":[{"last_name":"Ibáñez","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"date_published":"2013-05-24T00:00:00Z","month":"05","abstract":[{"lang":"eng","text":"Until recently, to prepare nanocrystals of a new material, scientists searched their shelves for the appropriate molecular precursors, surfactants, and solvents. They then optimized the reaction conditions for the atoms to self-assemble into monodisperse nanocrystals (1). This approach is being replaced by a simpler strategy, in which preformed nanocrystals serve as templates to produce nanoparticles with a different composition through chemical transformation. On page 964 of this issue, Oh et al. (2) report a powerful mechanism that allows the composition of oxide nanoparticles to be transformed in solution and at low temperatures."}],"publisher":"American Association for the Advancement of Science","publist_id":"7451","date_updated":"2021-01-12T07:52:09Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","page":"935 - 936"},{"abstract":[{"lang":"eng","text":"Understanding the relative importance of heterosis and outbreeding depression over multiple generations is a key question in evolutionary biology and is essential for identifying appropriate genetic sources for population and ecosystem restoration. Here we use 2455 experimental crosses between 12 population pairs of the rare perennial plant Rutidosis leptorrhynchoides (Asteraceae) to investigate the multi-generational (F1, F2, F3) fitness outcomes of inter-population hybridization. We detected no evidence of outbreeding depression, with inter-population hybrids and backcrosses showing either similar fitness or significant heterosis for fitness components across the three generations. Variation in heterosis among population pairs was best explained by characteristics of the foreign source or home population, and was greatest when the source population was large, with high genetic diversity and low inbreeding, and the home population was small and inbred. Our results indicate that the primary consideration for maximizing progeny fitness following population augmentation or restoration is the use of seed from large, genetically diverse populations."}],"oa":1,"external_id":{"pmid":["23173202"]},"intvolume":"       280","pmid":1,"year":"2013","language":[{"iso":"eng"}],"quality_controlled":"1","citation":{"ama":"Pickup M, Field D, Rowell D, Young A. Source population characteristics affect heterosis following genetic rescue of fragmented plant populations. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. 2013;280(1750). doi:<a href=\"https://doi.org/10.1098/rspb.2012.2058\">10.1098/rspb.2012.2058</a>","short":"M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).","chicago":"Pickup, Melinda, David Field, David Rowell, and Andrew Young. “Source Population Characteristics Affect Heterosis Following Genetic Rescue of Fragmented Plant Populations.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society, The, 2013. <a href=\"https://doi.org/10.1098/rspb.2012.2058\">https://doi.org/10.1098/rspb.2012.2058</a>.","apa":"Pickup, M., Field, D., Rowell, D., &#38; Young, A. (2013). Source population characteristics affect heterosis following genetic rescue of fragmented plant populations. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society, The. <a href=\"https://doi.org/10.1098/rspb.2012.2058\">https://doi.org/10.1098/rspb.2012.2058</a>","mla":"Pickup, Melinda, et al. “Source Population Characteristics Affect Heterosis Following Genetic Rescue of Fragmented Plant Populations.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 280, no. 1750, 2058, Royal Society, The, 2013, doi:<a href=\"https://doi.org/10.1098/rspb.2012.2058\">10.1098/rspb.2012.2058</a>.","ieee":"M. Pickup, D. Field, D. Rowell, and A. Young, “Source population characteristics affect heterosis following genetic rescue of fragmented plant populations,” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 280, no. 1750. Royal Society, The, 2013.","ista":"Pickup M, Field D, Rowell D, Young A. 2013. Source population characteristics affect heterosis following genetic rescue of fragmented plant populations. Proceedings of the Royal Society of London Series B Biological Sciences. 280(1750), 2058."},"doi":"10.1098/rspb.2012.2058","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"7372","date_updated":"2021-01-12T07:57:25Z","publisher":"Royal Society, The","date_published":"2013-01-07T00:00:00Z","month":"01","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574427/"}],"volume":280,"title":"Source population characteristics affect heterosis following genetic rescue of fragmented plant populations","status":"public","article_number":"2058","day":"07","author":[{"last_name":"Pickup","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","first_name":"Melinda","full_name":"Pickup, Melinda","orcid":"0000-0001-6118-0541"},{"orcid":"0000-0002-4014-8478","full_name":"Field, David","first_name":"David","id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field"},{"full_name":"Rowell, David","first_name":"David","last_name":"Rowell"},{"full_name":"Young, Andrew","last_name":"Young","first_name":"Andrew"}],"department":[{"_id":"NiBa"}],"date_created":"2018-12-11T11:46:32Z","oa_version":"Submitted Version","publication":"Proceedings of the Royal Society of London Series B Biological Sciences","_id":"450","issue":"1750","type":"journal_article"},{"language":[{"iso":"eng"}],"year":"2013","intvolume":"         7","has_accepted_license":"1","citation":{"ista":"Dickerson D, Bilkey D. 2013. Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. Frontiers in Behavioral Neuroscience. 7(DEC).","ieee":"D. Dickerson and D. Bilkey, “Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions,” <i>Frontiers in Behavioral Neuroscience</i>, vol. 7, no. DEC. Frontiers Research Foundation, 2013.","mla":"Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the Maternal Immune Activation Model: Using Translatable Measures to Explore Targeted Interventions.” <i>Frontiers in Behavioral Neuroscience</i>, vol. 7, no. DEC, Frontiers Research Foundation, 2013, doi:<a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">10.3389/fnbeh.2013.00217</a>.","apa":"Dickerson, D., &#38; Bilkey, D. (2013). Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. <i>Frontiers in Behavioral Neuroscience</i>. Frontiers Research Foundation. <a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">https://doi.org/10.3389/fnbeh.2013.00217</a>","chicago":"Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the Maternal Immune Activation Model: Using Translatable Measures to Explore Targeted Interventions.” <i>Frontiers in Behavioral Neuroscience</i>. Frontiers Research Foundation, 2013. <a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">https://doi.org/10.3389/fnbeh.2013.00217</a>.","short":"D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).","ama":"Dickerson D, Bilkey D. Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. <i>Frontiers in Behavioral Neuroscience</i>. 2013;7(DEC). doi:<a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">10.3389/fnbeh.2013.00217</a>"},"doi":"10.3389/fnbeh.2013.00217","quality_controlled":"1","file":[{"file_id":"5128","access_level":"open_access","date_created":"2018-12-12T10:15:10Z","content_type":"application/pdf","relation":"main_file","file_name":"IST-2018-953-v1+1_2013_Dickerson_Aberrant_neural.pdf","checksum":"cd7183121e56251176100ccac165c95c","file_size":530134,"creator":"system","date_updated":"2020-07-14T12:46:35Z"}],"ddc":["571"],"oa":1,"abstract":[{"text":"Maternal exposure to infection occurring mid-gestation produces a three-fold increase in the risk of schizophrenia in the offspring. The critical initiating factor appears to be the maternal immune activation (MIA) that follows infection. This process can be induced in rodents by exposure of pregnant dams to the viral mimic Poly I:C, which triggers an immune response that results in structural, functional, behavioral, and electrophysiological phenotypes in the adult offspring that model those seen in schizophrenia. We used this model to explore the role of synchronization in brain neural networks, a process thought to be dysfunctional in schizophrenia and previously associated with positive, negative, and cognitive symptoms of schizophrenia. Exposure of pregnant dams to Poly I:C on GD15 produced an impairment in long-range neural synchrony in adult offspring between two regions implicated in schizophrenia pathology; the hippocampus and the medial prefrontal cortex (mPFC). This reduction in synchrony was ameliorated by acute doses of the antipsychotic clozapine. MIA animals have previously been shown to have impaired pre-pulse inhibition (PPI), a gold-standard measure of schizophrenia-like deficits in animal models. Our data showed that deficits in synchrony were positively correlated with the impairments in PPI. Subsequent analysis of LFP activity during the PPI response also showed that reduced coupling between the mPFC and the hippocampus following processing of the pre-pulse was associated with reduced PPI. The ability of the MIA intervention to model neurodevelopmental aspects of schizophrenia pathology provides a useful platform from which to investigate the ontogeny of aberrant synchronous processes. Further, the way in which the model expresses translatable deficits such as aberrant synchrony and reduced PPI will allow researchers to explore novel intervention strategies targeted to these changes. ","lang":"eng"}],"day":"27","status":"public","volume":7,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions","issue":"DEC","_id":"476","type":"journal_article","publication":"Frontiers in Behavioral Neuroscience","file_date_updated":"2020-07-14T12:46:35Z","oa_version":"Published Version","date_created":"2018-12-11T11:46:41Z","pubrep_id":"953","department":[{"_id":"JoCs"}],"author":[{"full_name":"Dickerson, Desiree","last_name":"Dickerson","first_name":"Desiree","id":"444EB89E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Bilkey, David","first_name":"David","last_name":"Bilkey"}],"date_published":"2013-12-27T00:00:00Z","month":"12","publisher":"Frontiers Research Foundation","publist_id":"7346","date_updated":"2021-01-12T08:00:53Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published"},{"year":"2013","day":"04","language":[{"iso":"eng"}],"title":"Dynamic persistence of antibiotic-stressed mycobacteria","volume":339,"status":"public","intvolume":"       339","citation":{"ama":"Wakamoto Y, Dhar N, Chait RP, et al. Dynamic persistence of antibiotic-stressed mycobacteria. <i>Science</i>. 2013;339(6115):91-95. doi:<a href=\"https://doi.org/10.1126/science.1229858\">10.1126/science.1229858</a>","apa":"Wakamoto, Y., Dhar, N., Chait, R. P., Schneider, K., Signorino Gelo, F., Leibler, S., &#38; Mckinney, J. (2013). Dynamic persistence of antibiotic-stressed mycobacteria. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1229858\">https://doi.org/10.1126/science.1229858</a>","chicago":"Wakamoto, Yurichi, Neraaj Dhar, Remy P Chait, Katrin Schneider, François Signorino Gelo, Stanislas Leibler, and John Mckinney. “Dynamic Persistence of Antibiotic-Stressed Mycobacteria.” <i>Science</i>. American Association for the Advancement of Science, 2013. <a href=\"https://doi.org/10.1126/science.1229858\">https://doi.org/10.1126/science.1229858</a>.","short":"Y. Wakamoto, N. Dhar, R.P. Chait, K. Schneider, F. Signorino Gelo, S. Leibler, J. Mckinney, Science 339 (2013) 91–95.","ieee":"Y. Wakamoto <i>et al.</i>, “Dynamic persistence of antibiotic-stressed mycobacteria,” <i>Science</i>, vol. 339, no. 6115. American Association for the Advancement of Science, pp. 91–95, 2013.","ista":"Wakamoto Y, Dhar N, Chait RP, Schneider K, Signorino Gelo F, Leibler S, Mckinney J. 2013. Dynamic persistence of antibiotic-stressed mycobacteria. Science. 339(6115), 91–95.","mla":"Wakamoto, Yurichi, et al. “Dynamic Persistence of Antibiotic-Stressed Mycobacteria.” <i>Science</i>, vol. 339, no. 6115, American Association for the Advancement of Science, 2013, pp. 91–95, doi:<a href=\"https://doi.org/10.1126/science.1229858\">10.1126/science.1229858</a>."},"doi":"10.1126/science.1229858","quality_controlled":"1","date_created":"2018-12-11T11:46:48Z","oa_version":"None","_id":"499","type":"journal_article","issue":"6115","publication":"Science","author":[{"full_name":"Wakamoto, Yurichi","first_name":"Yurichi","last_name":"Wakamoto"},{"last_name":"Dhar","first_name":"Neraaj","full_name":"Dhar, Neraaj"},{"first_name":"Remy P","id":"3464AE84-F248-11E8-B48F-1D18A9856A87","last_name":"Chait","orcid":"0000-0003-0876-3187","full_name":"Chait, Remy P"},{"last_name":"Schneider","first_name":"Katrin","full_name":"Schneider, Katrin"},{"first_name":"François","last_name":"Signorino Gelo","full_name":"Signorino Gelo, François"},{"full_name":"Leibler, Stanislas","last_name":"Leibler","first_name":"Stanislas"},{"first_name":"John","last_name":"Mckinney","full_name":"Mckinney, John"}],"department":[{"_id":"CaGu"},{"_id":"GaTk"}],"abstract":[{"text":"Exposure of an isogenic bacterial population to a cidal antibiotic typically fails to eliminate a small fraction of refractory cells. Historically, fractional killing has been attributed to infrequently dividing or nondividing &quot;persisters.&quot; Using microfluidic cultures and time-lapse microscopy, we found that Mycobacterium smegmatis persists by dividing in the presence of the drug isoniazid (INH). Although persistence in these studies was characterized by stable numbers of cells, this apparent stability was actually a dynamic state of balanced division and death. Single cells expressed catalase-peroxidase (KatG), which activates INH, in stochastic pulses that were negatively correlated with cell survival. These behaviors may reflect epigenetic effects, because KatG pulsing and death were correlated between sibling cells. Selection of lineages characterized by infrequent KatG pulsing could allow nonresponsive adaptation during prolonged drug exposure.","lang":"eng"}],"date_published":"2013-01-04T00:00:00Z","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"American Association for the Advancement of Science","publist_id":"7321","date_updated":"2021-01-12T08:01:06Z","scopus_import":1,"page":"91 - 95"},{"month":"10","date_published":"2013-10-09T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","publisher":"BioMed Central","date_updated":"2021-01-12T08:01:08Z","publist_id":"7320","scopus_import":1,"day":"09","volume":13,"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza","article_number":"222","status":"public","pubrep_id":"941","date_created":"2018-12-11T11:46:49Z","oa_version":"Published Version","_id":"500","issue":"1","type":"journal_article","publication":"BMC Evolutionary Biology","file_date_updated":"2020-07-14T12:46:36Z","author":[{"full_name":"Ward, Melissa","last_name":"Ward","first_name":"Melissa"},{"last_name":"Lycett","first_name":"Samantha","full_name":"Lycett, Samantha"},{"last_name":"Avila","first_name":"Dorita","full_name":"Avila, Dorita"},{"full_name":"Bollback, Jonathan P","orcid":"0000-0002-4624-4612","first_name":"Jonathan P","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","last_name":"Bollback"},{"full_name":"Leigh Brown, Andrew","last_name":"Leigh Brown","first_name":"Andrew"}],"department":[{"_id":"JoBo"}],"ddc":["576"],"oa":1,"abstract":[{"text":"Background: Reassortment between the RNA segments encoding haemagglutinin (HA) and neuraminidase (NA), the major antigenic influenza proteins, produces viruses with novel HA and NA subtype combinations and has preceded the emergence of pandemic strains. It has been suggested that productive viral infection requires a balance in the level of functional activity of HA and NA, arising from their closely interacting roles in the viral life cycle, and that this functional balance could be mediated by genetic changes in the HA and NA. Here, we investigate how the selective pressure varies for H7 avian influenza HA on different NA subtype backgrounds. Results: By extending Bayesian stochastic mutational mapping methods to calculate the ratio of the rate of non-synonymous change to the rate of synonymous change (d N/d S), we found the average d N/d S across the avian influenza H7 HA1 region to be significantly greater on an N2 NA subtype background than on an N1, N3 or N7 background. Observed differences in evolutionary rates of H7 HA on different NA subtype backgrounds could not be attributed to underlying differences between avian host species or virus pathogenicity. Examination of d N/d S values for each subtype on a site-by-site basis indicated that the elevated d N/d S on the N2 NA background was a result of increased selection, rather than a relaxation of selective constraint. Conclusions: Our results are consistent with the hypothesis that reassortment exposes influenza HA to significant changes in selective pressure through genetic interactions with NA. Such epistatic effects might be explicitly accounted for in future models of influenza evolution.","lang":"eng"}],"file":[{"date_updated":"2020-07-14T12:46:36Z","creator":"system","file_size":1150052,"checksum":"52cf48a7c1794676ae8b0029573a84a9","file_name":"IST-2018-941-v1+1_2013_Bollback_Evolutionary_interactionspdf.pdf","relation":"main_file","content_type":"application/pdf","date_created":"2018-12-12T10:08:59Z","access_level":"open_access","file_id":"4722"}],"year":"2013","language":[{"iso":"eng"}],"has_accepted_license":"1","intvolume":"        13","doi":"10.1186/1471-2148-13-222","citation":{"ama":"Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. <i>BMC Evolutionary Biology</i>. 2013;13(1). doi:<a href=\"https://doi.org/10.1186/1471-2148-13-222\">10.1186/1471-2148-13-222</a>","apa":"Ward, M., Lycett, S., Avila, D., Bollback, J. P., &#38; Leigh Brown, A. (2013). Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. <i>BMC Evolutionary Biology</i>. BioMed Central. <a href=\"https://doi.org/10.1186/1471-2148-13-222\">https://doi.org/10.1186/1471-2148-13-222</a>","short":"M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).","chicago":"Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” <i>BMC Evolutionary Biology</i>. BioMed Central, 2013. <a href=\"https://doi.org/10.1186/1471-2148-13-222\">https://doi.org/10.1186/1471-2148-13-222</a>.","ista":"Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. 2013. Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. BMC Evolutionary Biology. 13(1), 222.","ieee":"M. Ward, S. Lycett, D. Avila, J. P. Bollback, and A. Leigh Brown, “Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza,” <i>BMC Evolutionary Biology</i>, vol. 13, no. 1. BioMed Central, 2013.","mla":"Ward, Melissa, et al. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” <i>BMC Evolutionary Biology</i>, vol. 13, no. 1, 222, BioMed Central, 2013, doi:<a href=\"https://doi.org/10.1186/1471-2148-13-222\">10.1186/1471-2148-13-222</a>."},"quality_controlled":"1","acknowledgement":"This work was supported by the Biotechnology and Biological Sciences Research Council, the Government of the Republic of Panama, the Interdisciplinary Centre for Human and Avian Influenza Research (www.ichair-flu.org) funded by the Scottish Funding Council, and the Institute for Science and Technology Austria.\r\nCC BY 2.0\r\n"},{"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","page":"1331 - 1345","abstract":[{"lang":"eng","text":"All known species of extant tapirs are allopatric: 1 in southeastern Asia and 3 in Central and South America. The fossil record for tapirs, however, is much wider in geographical range, including Europe, Asia, and North and South America, going back to the late Oligocene, making the present distribution a relict of the original one. We here describe a new species of living Tapirus from the Amazon rain forest, the 1st since T. bairdii Gill, 1865, and the 1st new Perissodactyla in more than 100 years, from both morphological and molecular characters. It is shorter in stature than T. terrestris (Linnaeus, 1758) and has distinctive skull morphology, and it is basal to the clade formed by T. terrestris and T. pinchaque (Roulin, 1829). This highlights the unrecognized biodiversity in western Amazonia, where the biota faces increasing threats. Local peoples have long recognized our new species, suggesting a key role for traditional knowledge in understanding the biodiversity of the region."}],"ddc":["570"],"oa":1,"file":[{"file_id":"4980","date_created":"2018-12-12T10:12:59Z","access_level":"open_access","content_type":"application/pdf","relation":"main_file","file_name":"IST-2018-940-v1+1_2013_Redondo_A_new.pdf","checksum":"8007815078dccac21ecd1cf73a269dc6","file_size":1040765,"creator":"system","date_updated":"2020-07-14T12:46:36Z"}],"quality_controlled":"1","doi":"10.1644/12-MAMM-A-169.1","citation":{"apa":"Cozzuol, M., Clozato, C., Holanda, E., Rodrigues, F., Nienow, S., De Thoisy, B., … Santos, F. (2013). A new species of tapir from the Amazon. <i>Journal of Mammalogy</i>. Oxford University Press. <a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">https://doi.org/10.1644/12-MAMM-A-169.1</a>","short":"M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy, R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.","chicago":"Cozzuol, Mario, Camila Clozato, Elizete Holanda, Flávio Rodrigues, Samuel Nienow, Benoit De Thoisy, Rodrigo A Fernandes Redondo, and Fabrício Santos. “A New Species of Tapir from the Amazon.” <i>Journal of Mammalogy</i>. Oxford University Press, 2013. <a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">https://doi.org/10.1644/12-MAMM-A-169.1</a>.","ista":"Cozzuol M, Clozato C, Holanda E, Rodrigues F, Nienow S, De Thoisy B, Fernandes Redondo RA, Santos F. 2013. A new species of tapir from the Amazon. Journal of Mammalogy. 94(6), 1331–1345.","ieee":"M. Cozzuol <i>et al.</i>, “A new species of tapir from the Amazon,” <i>Journal of Mammalogy</i>, vol. 94, no. 6. Oxford University Press, pp. 1331–1345, 2013.","mla":"Cozzuol, Mario, et al. “A New Species of Tapir from the Amazon.” <i>Journal of Mammalogy</i>, vol. 94, no. 6, Oxford University Press, 2013, pp. 1331–45, doi:<a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">10.1644/12-MAMM-A-169.1</a>.","ama":"Cozzuol M, Clozato C, Holanda E, et al. A new species of tapir from the Amazon. <i>Journal of Mammalogy</i>. 2013;94(6):1331-1345. doi:<a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">10.1644/12-MAMM-A-169.1</a>"},"year":"2013","language":[{"iso":"eng"}],"has_accepted_license":"1","intvolume":"        94","scopus_import":1,"month":"12","date_published":"2013-12-01T00:00:00Z","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"7319","date_updated":"2021-01-12T08:01:09Z","publisher":"Oxford University Press","oa_version":"Published Version","date_created":"2018-12-11T11:46:49Z","pubrep_id":"940","file_date_updated":"2020-07-14T12:46:36Z","publication":"Journal of Mammalogy","issue":"6","_id":"501","type":"journal_article","author":[{"full_name":"Cozzuol, Mario","first_name":"Mario","last_name":"Cozzuol"},{"first_name":"Camila","last_name":"Clozato","full_name":"Clozato, Camila"},{"full_name":"Holanda, Elizete","last_name":"Holanda","first_name":"Elizete"},{"first_name":"Flávio","last_name":"Rodrigues","full_name":"Rodrigues, Flávio"},{"last_name":"Nienow","first_name":"Samuel","full_name":"Nienow, Samuel"},{"full_name":"De Thoisy, Benoit","first_name":"Benoit","last_name":"De Thoisy"},{"orcid":"0000-0002-5837-2793","full_name":"Fernandes Redondo, Rodrigo A","last_name":"Fernandes Redondo","id":"409D5C96-F248-11E8-B48F-1D18A9856A87","first_name":"Rodrigo A"},{"full_name":"Santos, Fabrício","last_name":"Santos","first_name":"Fabrício"}],"department":[{"_id":"JoBo"}],"day":"01","volume":94,"tmp":{"image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"title":"A new species of tapir from the Amazon","status":"public"},{"date_published":"2013-11-22T00:00:00Z","month":"11","abstract":[{"text":"Blind signatures allow users to obtain signatures on messages hidden from the signer; moreover, the signer cannot link the resulting message/signature pair to the signing session. This paper presents blind signature schemes, in which the number of interactions between the user and the signer is minimal and whose blind signatures are short. Our schemes are defined over bilinear groups and are proved secure in the common-reference-string model without random oracles and under standard assumptions: CDH and the decision-linear assumption. (We also give variants over asymmetric groups based on similar assumptions.) The blind signatures are Waters signatures, which consist of 2 group elements. Moreover, we instantiate partially blind signatures, where the message consists of a part hidden from the signer and a commonly known public part, and schemes achieving perfect blindness. We propose new variants of blind signatures, such as signer-friendly partially blind signatures, where the public part can be chosen by the signer without prior agreement, 3-party blind signatures, as well as blind signatures on multiple aggregated messages provided by independent sources. We also extend Waters signatures to non-binary alphabets by proving a new result on the underlying hash function. ","lang":"eng"}],"date_updated":"2021-01-12T08:01:09Z","publist_id":"7318","publisher":"IOS Press","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"627 - 661","scopus_import":1,"language":[{"iso":"eng"}],"day":"22","year":"2013","status":"public","intvolume":"        21","volume":21,"title":"Short blind signatures","publication":"Journal of Computer Security","issue":"5","_id":"502","type":"journal_article","oa_version":"None","date_created":"2018-12-11T11:46:50Z","quality_controlled":"1","doi":"10.3233/JCS-130477","citation":{"ama":"Blazy O, Fuchsbauer G, Pointcheval D, Vergnaud D. Short blind signatures. <i>Journal of Computer Security</i>. 2013;21(5):627-661. doi:<a href=\"https://doi.org/10.3233/JCS-130477\">10.3233/JCS-130477</a>","apa":"Blazy, O., Fuchsbauer, G., Pointcheval, D., &#38; Vergnaud, D. (2013). Short blind signatures. <i>Journal of Computer Security</i>. IOS Press. <a href=\"https://doi.org/10.3233/JCS-130477\">https://doi.org/10.3233/JCS-130477</a>","short":"O. Blazy, G. Fuchsbauer, D. Pointcheval, D. Vergnaud, Journal of Computer Security 21 (2013) 627–661.","chicago":"Blazy, Olivier, Georg Fuchsbauer, David Pointcheval, and Damien Vergnaud. “Short Blind Signatures.” <i>Journal of Computer Security</i>. IOS Press, 2013. <a href=\"https://doi.org/10.3233/JCS-130477\">https://doi.org/10.3233/JCS-130477</a>.","ieee":"O. Blazy, G. Fuchsbauer, D. Pointcheval, and D. Vergnaud, “Short blind signatures,” <i>Journal of Computer Security</i>, vol. 21, no. 5. IOS Press, pp. 627–661, 2013.","ista":"Blazy O, Fuchsbauer G, Pointcheval D, Vergnaud D. 2013. Short blind signatures. Journal of Computer Security. 21(5), 627–661.","mla":"Blazy, Olivier, et al. “Short Blind Signatures.” <i>Journal of Computer Security</i>, vol. 21, no. 5, IOS Press, 2013, pp. 627–61, doi:<a href=\"https://doi.org/10.3233/JCS-130477\">10.3233/JCS-130477</a>."},"department":[{"_id":"KrPi"}],"author":[{"last_name":"Blazy","first_name":"Olivier","full_name":"Blazy, Olivier"},{"id":"46B4C3EE-F248-11E8-B48F-1D18A9856A87","first_name":"Georg","last_name":"Fuchsbauer","full_name":"Fuchsbauer, Georg"},{"full_name":"Pointcheval, David","last_name":"Pointcheval","first_name":"David"},{"first_name":"Damien","last_name":"Vergnaud","full_name":"Vergnaud, Damien"}]}]