[{"page":"4036-4058","year":"2016","day":"28","doi":"10.1002/hyp.10971","intvolume":"        30","publication":"Hydrological Processes","scopus_import":"1","keyword":["Water Science and Technology"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-02-24T11:29:28Z","extern":"1","citation":{"ieee":"A. Ayala <i>et al.</i>, “Modelling the hydrological response of debris-free and debris-covered glaciers to present climatic conditions in the semiarid Andes of central Chile,” <i>Hydrological Processes</i>, vol. 30, no. 22. Wiley, pp. 4036–4058, 2016.","apa":"Ayala, A., Pellicciotti, F., MacDonell, S., McPhee, J., Vivero, S., Campos, C., &#38; Egli, P. (2016). Modelling the hydrological response of debris-free and debris-covered glaciers to present climatic conditions in the semiarid Andes of central Chile. <i>Hydrological Processes</i>. Wiley. <a href=\"https://doi.org/10.1002/hyp.10971\">https://doi.org/10.1002/hyp.10971</a>","ama":"Ayala A, Pellicciotti F, MacDonell S, et al. Modelling the hydrological response of debris-free and debris-covered glaciers to present climatic conditions in the semiarid Andes of central Chile. <i>Hydrological Processes</i>. 2016;30(22):4036-4058. doi:<a href=\"https://doi.org/10.1002/hyp.10971\">10.1002/hyp.10971</a>","ista":"Ayala A, Pellicciotti F, MacDonell S, McPhee J, Vivero S, Campos C, Egli P. 2016. Modelling the hydrological response of debris-free and debris-covered glaciers to present climatic conditions in the semiarid Andes of central Chile. Hydrological Processes. 30(22), 4036–4058.","chicago":"Ayala, A., Francesca Pellicciotti, S. MacDonell, J. McPhee, S. Vivero, C. Campos, and P. Egli. “Modelling the Hydrological Response of Debris-Free and Debris-Covered Glaciers to Present Climatic Conditions in the Semiarid Andes of Central Chile.” <i>Hydrological Processes</i>. Wiley, 2016. <a href=\"https://doi.org/10.1002/hyp.10971\">https://doi.org/10.1002/hyp.10971</a>.","short":"A. Ayala, F. Pellicciotti, S. MacDonell, J. McPhee, S. Vivero, C. Campos, P. Egli, Hydrological Processes 30 (2016) 4036–4058.","mla":"Ayala, A., et al. “Modelling the Hydrological Response of Debris-Free and Debris-Covered Glaciers to Present Climatic Conditions in the Semiarid Andes of Central Chile.” <i>Hydrological Processes</i>, vol. 30, no. 22, Wiley, 2016, pp. 4036–58, doi:<a href=\"https://doi.org/10.1002/hyp.10971\">10.1002/hyp.10971</a>."},"publisher":"Wiley","date_published":"2016-07-28T00:00:00Z","title":"Modelling the hydrological response of debris-free and debris-covered glaciers to present climatic conditions in the semiarid Andes of central Chile","abstract":[{"lang":"eng","text":"We apply the process-based, distributed TOPKAPI-ETH glacio-hydrological model to a glacierized catchment (19% glacierized) in the semiarid Andes of central Chile. The semiarid Andes provides vital freshwater resources to valleys in Chile and Argentina, but only few glacio-hydrological modelling studies have been conducted, and its dominant hydrological processes remain poorly understood. The catchment contains two debris-free glaciers reaching down to 3900 m asl (Bello and Yeso glaciers) and one debris-covered avalanche-fed glacier reaching to 3200 m asl (Piramide Glacier). Our main objective is to compare the mass balance and runoff contributions of both glacier types under current climatic conditions. We use a unique dataset of field measurements collected over two ablation seasons combined with the distributed TOPKAPI-ETH model that includes physically oriented parameterizations of snow and ice ablation, gravitational distribution of snow, snow albedo evolution and the ablation of debris-covered ice. Model outputs indicate that while the mass balance of Bello and Yeso glaciers is mostly explained by temperature gradients, the Piramide Glacier mass balance is governed by debris thickness and avalanches and has a clear non-linear profile with elevation as a result. Despite the thermal insulation effect of the debris cover, the mass balance and contribution to runoff from debris-free and debris-covered glaciers are similar in magnitude, mainly because of elevation differences. However, runoff contributions are distinct in time and seasonality with ice melt starting approximately four weeks earlier from the debris-covered glacier, what is of relevance for water resources management. At the catchment scale, snowmelt is the dominant contributor to runoff during both years. However, during the driest year of our simulations, ice melt contributes 42 ± 8% and 67 ± 6% of the annual and summer runoff, respectively. Sensitivity analyses show that runoff is most sensitive to temperature and precipitation gradients, melt factors and debris cover thickness. "}],"publication_status":"published","publication_identifier":{"issn":["0885-6087"]},"status":"public","date_created":"2023-02-20T08:14:40Z","_id":"12615","type":"journal_article","article_type":"original","author":[{"full_name":"Ayala, A.","last_name":"Ayala","first_name":"A."},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","last_name":"Pellicciotti"},{"full_name":"MacDonell, S.","last_name":"MacDonell","first_name":"S."},{"full_name":"McPhee, J.","last_name":"McPhee","first_name":"J."},{"last_name":"Vivero","first_name":"S.","full_name":"Vivero, S."},{"full_name":"Campos, C.","last_name":"Campos","first_name":"C."},{"first_name":"P.","last_name":"Egli","full_name":"Egli, P."}],"quality_controlled":"1","oa_version":"None","language":[{"iso":"eng"}],"article_processing_charge":"No","volume":30,"month":"07","issue":"22"},{"title":"Estimating runoff from a glacierized catchment using natural tracers in the semi-arid Andes cordillera","date_published":"2016-07-22T00:00:00Z","publisher":"Wiley","abstract":[{"text":"This paper presents a methodology for hydrograph separation in mountain watersheds, which aims at identifying flow sources among ungauged headwater sub-catchments through a combination of observed streamflow and data on natural tracers including isotope and dissolved solids. Daily summer and bi-daily spring season water samples obtained at the outlet of the Juncal River Basin in the Andes of Central Chile were analysed for all major ions as well as stable water isotopes, δ18O and δD. Additionally, various samples from rain, snow, surface streams and exfiltrating subsurface water (springs) were sampled throughout the catchment. A principal component analysis was performed in order to address cross-correlation in the tracer dataset, reduce the dimensionality of the problem and uncover patterns of variability. Potential sources were identified in a two-component U-space that explains 94% of the observed tracer variability at the catchment outlet. Hydrograph separation was performed through an Informative-Bayesian model. Our results indicate that the Juncal Norte Glacier headwater sub-catchment contributed at least 50% of summer flows at the Juncal River Basin outlet during the 2011–2012 water year (a hydrologically dry period in the Region), even though it accounts for only 27% of the basin area. Our study confirms the value of combining solute and isotope information for estimating source contributions in complex hydrologic systems, and provides insights regarding experimental design in high-elevation semi-arid catchments. The findings of this study can be useful for evaluating modelling studies of the hydrological consequences of the rapid decrease in glacier cover observed in this region, by providing insights into the origin of river water in basins with little hydrometeorological information.","lang":"eng"}],"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"M. Rodriguez, N. Ohlanders, F. Pellicciotti, M. W. Williams, and J. McPhee, “Estimating runoff from a glacierized catchment using natural tracers in the semi-arid Andes cordillera,” <i>Hydrological Processes</i>, vol. 30, no. 20. Wiley, pp. 3609–3626, 2016.","apa":"Rodriguez, M., Ohlanders, N., Pellicciotti, F., Williams, M. W., &#38; McPhee, J. (2016). Estimating runoff from a glacierized catchment using natural tracers in the semi-arid Andes cordillera. <i>Hydrological Processes</i>. Wiley. <a href=\"https://doi.org/10.1002/hyp.10973\">https://doi.org/10.1002/hyp.10973</a>","ista":"Rodriguez M, Ohlanders N, Pellicciotti F, Williams MW, McPhee J. 2016. Estimating runoff from a glacierized catchment using natural tracers in the semi-arid Andes cordillera. Hydrological Processes. 30(20), 3609–3626.","chicago":"Rodriguez, Maximiliano, Nils Ohlanders, Francesca Pellicciotti, Mark W. Williams, and James McPhee. “Estimating Runoff from a Glacierized Catchment Using Natural Tracers in the Semi-Arid Andes Cordillera.” <i>Hydrological Processes</i>. Wiley, 2016. <a href=\"https://doi.org/10.1002/hyp.10973\">https://doi.org/10.1002/hyp.10973</a>.","ama":"Rodriguez M, Ohlanders N, Pellicciotti F, Williams MW, McPhee J. Estimating runoff from a glacierized catchment using natural tracers in the semi-arid Andes cordillera. <i>Hydrological Processes</i>. 2016;30(20):3609-3626. doi:<a href=\"https://doi.org/10.1002/hyp.10973\">10.1002/hyp.10973</a>","short":"M. Rodriguez, N. Ohlanders, F. Pellicciotti, M.W. Williams, J. McPhee, Hydrological Processes 30 (2016) 3609–3626.","mla":"Rodriguez, Maximiliano, et al. “Estimating Runoff from a Glacierized Catchment Using Natural Tracers in the Semi-Arid Andes Cordillera.” <i>Hydrological Processes</i>, vol. 30, no. 20, Wiley, 2016, pp. 3609–26, doi:<a href=\"https://doi.org/10.1002/hyp.10973\">10.1002/hyp.10973</a>."},"date_updated":"2023-02-24T11:26:54Z","extern":"1","publication":"Hydrological Processes","intvolume":"        30","scopus_import":"1","keyword":["Water Science and Technology"],"page":"3609-3626","doi":"10.1002/hyp.10973","year":"2016","day":"22","article_processing_charge":"No","volume":30,"language":[{"iso":"eng"}],"issue":"20","month":"07","author":[{"last_name":"Rodriguez","first_name":"Maximiliano","full_name":"Rodriguez, Maximiliano"},{"full_name":"Ohlanders, Nils","last_name":"Ohlanders","first_name":"Nils"},{"last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"last_name":"Williams","first_name":"Mark W.","full_name":"Williams, Mark W."},{"last_name":"McPhee","first_name":"James","full_name":"McPhee, James"}],"oa_version":"None","quality_controlled":"1","status":"public","publication_identifier":{"issn":["0885-6087"]},"type":"journal_article","_id":"12616","article_type":"original","date_created":"2023-02-20T08:14:45Z"},{"type":"journal_article","_id":"12617","article_type":"original","date_created":"2023-02-20T08:14:51Z","status":"public","publication_identifier":{"issn":["1994-0424"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5194/tc-10-2075-2016"}],"issue":"5","month":"09","article_processing_charge":"No","volume":10,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"full_name":"Ragettli, Silvan","last_name":"Ragettli","first_name":"Silvan"},{"full_name":"Bolch, Tobias","first_name":"Tobias","last_name":"Bolch"},{"first_name":"Francesca","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"scopus_import":"1","keyword":["Earth-Surface Processes","Water Science and Technology"],"publication":"The Cryosphere","intvolume":"        10","oa":1,"day":"14","page":"2075-2097","year":"2016","doi":"10.5194/tc-10-2075-2016","abstract":[{"text":"This study presents volume and mass changes of seven (five partially debris-covered, two debris-free) glaciers in the upper Langtang catchment in Nepal. We use a digital elevation model (DEM) from 1974 stereo Hexagon satellite data and seven DEMs derived from 2006–2015 stereo or tri-stereo satellite imagery (e.g., SPOT6/7). The availability of multiple independent DEM differences allows the identification of a robust signal and narrowing down of the uncertainty about recent volume changes. The volume changes calculated over several multiyear periods between 2006 and 2015 consistently indicate that glacier thinning has accelerated with respect to the period 1974–2006. We calculate an ensemble-mean elevation change rate of –0.45 ± 0.18 m a−1 for 2006–2015, while for the period 1974–2006 we compute a rate of −0.24 ± 0.08 m a−1. However, the behavior of glaciers in the study area is heterogeneous, and the presence or absence of debris does not seem to be a good predictor for mass balance trends. Debris-covered tongues have nonlinear thinning profiles, and we show that recent accelerations in thinning correlate with the presence of supraglacial cliffs and lakes. At stagnating glacier areas near the glacier front, however, thinning rates decreased with time or remained constant. The April 2015 Nepal earthquake triggered large avalanches in the study catchment. Analysis of two post-earthquake DEMs revealed that the avalanche deposit volumes remaining 6 months after the earthquake are negligible in comparison to 2006–2015 elevation changes. However, the deposits compensate about 40 % the mass loss of debris-covered tongues of 1 average year.","lang":"eng"}],"publication_status":"published","title":"Heterogeneous glacier thinning patterns over the last 40 years in Langtang Himal, Nepal","date_published":"2016-09-14T00:00:00Z","publisher":"Copernicus Publications","citation":{"short":"S. Ragettli, T. Bolch, F. Pellicciotti, The Cryosphere 10 (2016) 2075–2097.","mla":"Ragettli, Silvan, et al. “Heterogeneous Glacier Thinning Patterns over the Last 40 Years in Langtang Himal, Nepal.” <i>The Cryosphere</i>, vol. 10, no. 5, Copernicus Publications, 2016, pp. 2075–97, doi:<a href=\"https://doi.org/10.5194/tc-10-2075-2016\">10.5194/tc-10-2075-2016</a>.","chicago":"Ragettli, Silvan, Tobias Bolch, and Francesca Pellicciotti. “Heterogeneous Glacier Thinning Patterns over the Last 40 Years in Langtang Himal, Nepal.” <i>The Cryosphere</i>. Copernicus Publications, 2016. <a href=\"https://doi.org/10.5194/tc-10-2075-2016\">https://doi.org/10.5194/tc-10-2075-2016</a>.","ama":"Ragettli S, Bolch T, Pellicciotti F. Heterogeneous glacier thinning patterns over the last 40 years in Langtang Himal, Nepal. <i>The Cryosphere</i>. 2016;10(5):2075-2097. doi:<a href=\"https://doi.org/10.5194/tc-10-2075-2016\">10.5194/tc-10-2075-2016</a>","ista":"Ragettli S, Bolch T, Pellicciotti F. 2016. Heterogeneous glacier thinning patterns over the last 40 years in Langtang Himal, Nepal. The Cryosphere. 10(5), 2075–2097.","apa":"Ragettli, S., Bolch, T., &#38; Pellicciotti, F. (2016). Heterogeneous glacier thinning patterns over the last 40 years in Langtang Himal, Nepal. <i>The Cryosphere</i>. Copernicus Publications. <a href=\"https://doi.org/10.5194/tc-10-2075-2016\">https://doi.org/10.5194/tc-10-2075-2016</a>","ieee":"S. Ragettli, T. Bolch, and F. Pellicciotti, “Heterogeneous glacier thinning patterns over the last 40 years in Langtang Himal, Nepal,” <i>The Cryosphere</i>, vol. 10, no. 5. Copernicus Publications, pp. 2075–2097, 2016."},"date_updated":"2023-02-24T10:54:02Z","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"scopus_import":"1","keyword":["Multidisciplinary"],"publication":"PNAS","intvolume":"       113","oa":1,"page":"9222-9227","year":"2016","doi":"10.1073/pnas.1606526113","day":"01","abstract":[{"text":"Mountain ranges are the world’s natural water towers and provide water resources for millions of people. However, their hydrological balance and possible future changes in river flow remain poorly understood because of high meteorological variability, physical inaccessibility, and the complex interplay between climate, cryosphere, and hydrological processes. Here, we use a state-of-the art glacio-hydrological model informed by data from high-altitude observations and the latest climate change scenarios to quantify the climate change impact on water resources of two contrasting catchments vulnerable to changes in the cryosphere. The two study catchments are located in the Central Andes of Chile and in the Nepalese Himalaya in close vicinity of densely populated areas. Although both sites reveal a strong decrease in glacier area, they show a remarkably different hydrological response to projected climate change. In the Juncal catchment in Chile, runoff is likely to sharply decrease in the future and the runoff seasonality is sensitive to projected climatic changes. In the Langtang catchment in Nepal, future water availability is on the rise for decades to come with limited shifts between seasons. Owing to the high spatiotemporal resolution of the simulations and process complexity included in the modeling, the response times and the mechanisms underlying the variations in glacier area and river flow can be well constrained. The projections indicate that climate change adaptation in Central Chile should focus on dealing with a reduction in water availability, whereas in Nepal preparedness for flood extremes should be the policy priority.","lang":"eng"}],"publication_status":"published","title":"Contrasting climate change impact on river flows from high-altitude catchments in the Himalayan and Andes Mountains","publisher":"Proceedings of the National Academy of Sciences","date_published":"2016-08-01T00:00:00Z","pmid":1,"citation":{"ieee":"S. Ragettli, W. W. Immerzeel, and F. Pellicciotti, “Contrasting climate change impact on river flows from high-altitude catchments in the Himalayan and Andes Mountains,” <i>PNAS</i>, vol. 113, no. 33. Proceedings of the National Academy of Sciences, pp. 9222–9227, 2016.","apa":"Ragettli, S., Immerzeel, W. W., &#38; Pellicciotti, F. (2016). Contrasting climate change impact on river flows from high-altitude catchments in the Himalayan and Andes Mountains. <i>PNAS</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1606526113\">https://doi.org/10.1073/pnas.1606526113</a>","ama":"Ragettli S, Immerzeel WW, Pellicciotti F. Contrasting climate change impact on river flows from high-altitude catchments in the Himalayan and Andes Mountains. <i>PNAS</i>. 2016;113(33):9222-9227. doi:<a href=\"https://doi.org/10.1073/pnas.1606526113\">10.1073/pnas.1606526113</a>","ista":"Ragettli S, Immerzeel WW, Pellicciotti F. 2016. Contrasting climate change impact on river flows from high-altitude catchments in the Himalayan and Andes Mountains. PNAS. 113(33), 9222–9227.","chicago":"Ragettli, Silvan, Walter W. Immerzeel, and Francesca Pellicciotti. “Contrasting Climate Change Impact on River Flows from High-Altitude Catchments in the Himalayan and Andes Mountains.” <i>PNAS</i>. Proceedings of the National Academy of Sciences, 2016. <a href=\"https://doi.org/10.1073/pnas.1606526113\">https://doi.org/10.1073/pnas.1606526113</a>.","mla":"Ragettli, Silvan, et al. “Contrasting Climate Change Impact on River Flows from High-Altitude Catchments in the Himalayan and Andes Mountains.” <i>PNAS</i>, vol. 113, no. 33, Proceedings of the National Academy of Sciences, 2016, pp. 9222–27, doi:<a href=\"https://doi.org/10.1073/pnas.1606526113\">10.1073/pnas.1606526113</a>.","short":"S. Ragettli, W.W. Immerzeel, F. Pellicciotti, PNAS 113 (2016) 9222–9227."},"date_updated":"2023-02-24T10:48:43Z","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"pmid":["27482082"]},"_id":"12618","type":"journal_article","article_type":"original","date_created":"2023-02-20T08:14:58Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1073/pnas.1606526113"}],"status":"public","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"issue":"33","month":"08","article_processing_charge":"No","volume":113,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"last_name":"Ragettli","first_name":"Silvan","full_name":"Ragettli, Silvan"},{"first_name":"Walter W.","last_name":"Immerzeel","full_name":"Immerzeel, Walter W."},{"last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"}]},{"month":"08","issue":"234","language":[{"iso":"eng"}],"article_processing_charge":"No","volume":62,"quality_controlled":"1","oa_version":"Published Version","author":[{"first_name":"FANNY","last_name":"BRUN","full_name":"BRUN, FANNY"},{"full_name":"BURI, PASCAL","last_name":"BURI","first_name":"PASCAL"},{"full_name":"MILES, EVAN S.","last_name":"MILES","first_name":"EVAN S."},{"full_name":"WAGNON, PATRICK","last_name":"WAGNON","first_name":"PATRICK"},{"first_name":"JAKOB","last_name":"STEINER","full_name":"STEINER, JAKOB"},{"first_name":"ETIENNE","last_name":"BERTHIER","full_name":"BERTHIER, ETIENNE"},{"full_name":"RAGETTLI, SILVAN","first_name":"SILVAN","last_name":"RAGETTLI"},{"first_name":"PHILIP","last_name":"KRAAIJENBRINK","full_name":"KRAAIJENBRINK, PHILIP"},{"full_name":"IMMERZEEL, WALTER W.","last_name":"IMMERZEEL","first_name":"WALTER W."},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca"}],"date_created":"2023-02-20T08:15:06Z","_id":"12619","type":"journal_article","article_type":"original","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1017/jog.2016.54"}],"publication_identifier":{"issn":["0022-1430"],"eissn":["1727-5652"]},"abstract":[{"text":"Mass losses originating from supraglacial ice cliffs at the lower tongues of debris-covered glaciers are a potentially large component of the mass balance, but have rarely been quantified. In this study, we develop a method to estimate ice cliff volume losses based on high-resolution topographic data derived from terrestrial and aerial photogrammetry. We apply our method to six cliffs monitored in May and October 2013 and 2014 using four different topographic datasets collected over the debris-covered Lirung Glacier of the Nepalese Himalayas. During the monsoon, the cliff mean backwasting rate was relatively consistent in 2013 (3.8 ± 0.3 cm w.e. d<jats:sup>−1</jats:sup>) and more heterogeneous among cliffs in 2014 (3.1 ± 0.7 cm w.e. d<jats:sup>−1</jats:sup>), and the geometric variations between cliffs are larger. Their mean backwasting rate is significantly lower in winter (October 2013–May 2014), at 1.0 ± 0.3 cm w.e. d<jats:sup>−1</jats:sup>. These results are consistent with estimates of cliff ablation from an energy-balance model developed in a previous study. The ice cliffs lose mass at rates six times higher than estimates of glacier-wide melt under debris, which seems to confirm that ice cliffs provide a large contribution to total glacier melt.","lang":"eng"}],"publication_status":"published","publisher":"Cambridge University Press","date_published":"2016-08-01T00:00:00Z","title":"Quantifying volume loss from ice cliffs on debris-covered glaciers using high-resolution terrestrial and aerial photogrammetry","date_updated":"2023-02-24T10:36:55Z","extern":"1","citation":{"short":"F. BRUN, P. BURI, E.S. MILES, P. WAGNON, J. STEINER, E. BERTHIER, S. RAGETTLI, P. KRAAIJENBRINK, W.W. IMMERZEEL, F. Pellicciotti, Journal of Glaciology 62 (2016) 684–695.","mla":"BRUN, FANNY, et al. “Quantifying Volume Loss from Ice Cliffs on Debris-Covered Glaciers Using High-Resolution Terrestrial and Aerial Photogrammetry.” <i>Journal of Glaciology</i>, vol. 62, no. 234, Cambridge University Press, 2016, pp. 684–95, doi:<a href=\"https://doi.org/10.1017/jog.2016.54\">10.1017/jog.2016.54</a>.","ieee":"F. BRUN <i>et al.</i>, “Quantifying volume loss from ice cliffs on debris-covered glaciers using high-resolution terrestrial and aerial photogrammetry,” <i>Journal of Glaciology</i>, vol. 62, no. 234. Cambridge University Press, pp. 684–695, 2016.","ista":"BRUN F, BURI P, MILES ES, WAGNON P, STEINER J, BERTHIER E, RAGETTLI S, KRAAIJENBRINK P, IMMERZEEL WW, Pellicciotti F. 2016. Quantifying volume loss from ice cliffs on debris-covered glaciers using high-resolution terrestrial and aerial photogrammetry. Journal of Glaciology. 62(234), 684–695.","chicago":"BRUN, FANNY, PASCAL BURI, EVAN S. MILES, PATRICK WAGNON, JAKOB STEINER, ETIENNE BERTHIER, SILVAN RAGETTLI, PHILIP KRAAIJENBRINK, WALTER W. IMMERZEEL, and Francesca Pellicciotti. “Quantifying Volume Loss from Ice Cliffs on Debris-Covered Glaciers Using High-Resolution Terrestrial and Aerial Photogrammetry.” <i>Journal of Glaciology</i>. Cambridge University Press, 2016. <a href=\"https://doi.org/10.1017/jog.2016.54\">https://doi.org/10.1017/jog.2016.54</a>.","ama":"BRUN F, BURI P, MILES ES, et al. Quantifying volume loss from ice cliffs on debris-covered glaciers using high-resolution terrestrial and aerial photogrammetry. <i>Journal of Glaciology</i>. 2016;62(234):684-695. doi:<a href=\"https://doi.org/10.1017/jog.2016.54\">10.1017/jog.2016.54</a>","apa":"BRUN, F., BURI, P., MILES, E. S., WAGNON, P., STEINER, J., BERTHIER, E., … Pellicciotti, F. (2016). Quantifying volume loss from ice cliffs on debris-covered glaciers using high-resolution terrestrial and aerial photogrammetry. <i>Journal of Glaciology</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jog.2016.54\">https://doi.org/10.1017/jog.2016.54</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Earth-Surface Processes"],"scopus_import":"1","intvolume":"        62","publication":"Journal of Glaciology","oa":1,"year":"2016","doi":"10.1017/jog.2016.54","page":"684-695","day":"01"},{"_id":"1262","type":"journal_article","date_created":"2018-12-11T11:51:00Z","status":"public","pubrep_id":"701","oa_version":"Published Version","quality_controlled":"1","author":[{"first_name":"Dino","last_name":"Mcmahon","full_name":"Mcmahon, Dino"},{"full_name":"Natsopoulou, Myrsini","last_name":"Natsopoulou","first_name":"Myrsini"},{"first_name":"Vincent","last_name":"Doublet","full_name":"Doublet, Vincent"},{"id":"393B1196-F248-11E8-B48F-1D18A9856A87","full_name":"Fürst, Matthias","first_name":"Matthias","last_name":"Fürst","orcid":"0000-0002-3712-925X"},{"first_name":"Silvio","last_name":"Weging","full_name":"Weging, Silvio"},{"first_name":"Mark","last_name":"Brown","full_name":"Brown, Mark"},{"first_name":"Andreas","last_name":"Gogol Döring","full_name":"Gogol Döring, Andreas"},{"last_name":"Paxton","first_name":"Robert","full_name":"Paxton, Robert"}],"file":[{"content_type":"application/pdf","date_created":"2018-12-12T10:08:46Z","date_updated":"2020-07-14T12:44:42Z","file_name":"IST-2016-701-v1+1_20160811.full.pdf","relation":"main_file","checksum":"0b0d1be38b497d004064650acb3baced","file_id":"4708","creator":"system","access_level":"open_access","file_size":796872}],"article_number":"20160811","issue":"1833","has_accepted_license":"1","month":"06","volume":283,"language":[{"iso":"eng"}],"oa":1,"doi":"10.1098/rspb.2016.0811","year":"2016","day":"29","acknowledgement":"This work was supported by the Federal Ministry of Food, Agriculture and Consumer Protection (Germany): Fit Bee project (grant 511-06.01-28-1-71.007-10), the EU: BeeDoc (grant 244956), iDiv (2013 NGS-Fast Track grant W47004118) and the Insect Pollinators Initiative (IPI grant BB/I000100/1 and BB/I000151/1). The IPI is funded jointly by the Biotechnology and Biological Sciences Research Council, the Department for Environment, Food and Rural Affairs, the Natural Environment Research Council, the Scottish Government and the Wellcome Trust, under the Living with Environmental Change Partnership. We thank A. Abrahams, M. Husemann and A. Soro\r\nfor support in obtaining\r\nV.  destructor\r\n-free honeybees; and BBKA\r\nPresident D. Aston for access to records of colony overwinter\r\n2011–2012 mortality in the UK. We also thank the anonymous refe-\r\nrees and Stephen Martin for comments that led to substantial\r\nimprovement of the manuscript.","scopus_import":1,"related_material":{"record":[{"status":"public","relation":"research_data","id":"9704"}]},"publication":"Proceedings of the Royal Society of London Series B Biological Sciences","publist_id":"6060","intvolume":"       283","citation":{"short":"D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).","mla":"Mcmahon, Dino, et al. “Elevated Virulence of an Emerging Viral Genotype as a Driver of Honeybee Loss.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 283, no. 1833, 20160811, Royal Society, The, 2016, doi:<a href=\"https://doi.org/10.1098/rspb.2016.0811\">10.1098/rspb.2016.0811</a>.","ieee":"D. Mcmahon <i>et al.</i>, “Elevated virulence of an emerging viral genotype as a driver of honeybee loss,” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 283, no. 1833. Royal Society, The, 2016.","apa":"Mcmahon, D., Natsopoulou, M., Doublet, V., Fürst, M., Weging, S., Brown, M., … Paxton, R. (2016). Elevated virulence of an emerging viral genotype as a driver of honeybee loss. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society, The. <a href=\"https://doi.org/10.1098/rspb.2016.0811\">https://doi.org/10.1098/rspb.2016.0811</a>","ama":"Mcmahon D, Natsopoulou M, Doublet V, et al. Elevated virulence of an emerging viral genotype as a driver of honeybee loss. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. 2016;283(1833). doi:<a href=\"https://doi.org/10.1098/rspb.2016.0811\">10.1098/rspb.2016.0811</a>","chicago":"Mcmahon, Dino, Myrsini Natsopoulou, Vincent Doublet, Matthias Fürst, Silvio Weging, Mark Brown, Andreas Gogol Döring, and Robert Paxton. “Elevated Virulence of an Emerging Viral Genotype as a Driver of Honeybee Loss.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society, The, 2016. <a href=\"https://doi.org/10.1098/rspb.2016.0811\">https://doi.org/10.1098/rspb.2016.0811</a>.","ista":"Mcmahon D, Natsopoulou M, Doublet V, Fürst M, Weging S, Brown M, Gogol Döring A, Paxton R. 2016. Elevated virulence of an emerging viral genotype as a driver of honeybee loss. Proceedings of the Royal Society of London Series B Biological Sciences. 283(1833), 20160811."},"department":[{"_id":"SyCr"}],"date_updated":"2023-02-23T14:05:30Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"ddc":["576","592"],"publication_status":"published","abstract":[{"lang":"eng","text":"Emerging infectious diseases (EIDs) have contributed significantly to the current biodiversity crisis, leading to widespread epidemics and population loss. Owing to genetic variation in pathogen virulence, a complete understanding of species decline requires the accurate identification and characterization of EIDs. We explore this issue in the Western honeybee, where increasing mortality of populations in the Northern Hemisphere has caused major concern. Specifically, we investigate the importance of genetic identity of the main suspect in mortality, deformed wing virus (DWV), in driving honeybee loss. Using laboratory experiments and a systematic field survey, we demonstrate that an emerging DWV genotype (DWV-B) is more virulent than the established DWV genotype (DWV-A) and is widespread in the landscape. Furthermore, we show in a simple model that colonies infected with DWV-B collapse sooner than colonies infected with DWV-A. We also identify potential for rapid DWV evolution by revealing extensive genome-wide recombination in vivo. The emergence of DWV-B in naive honeybee populations, including via recombination with DWV-A, could be of significant ecological and economic importance. Our findings emphasize that knowledge of pathogen genetic identity and diversity is critical to understanding drivers of species decline."}],"title":"Elevated virulence of an emerging viral genotype as a driver of honeybee loss","file_date_updated":"2020-07-14T12:44:42Z","publisher":"Royal Society, The","date_published":"2016-06-29T00:00:00Z"},{"author":[{"last_name":"Carenzo","first_name":"M.","full_name":"Carenzo, M."},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca"},{"last_name":"Mabillard","first_name":"J.","full_name":"Mabillard, J."},{"last_name":"Reid","first_name":"T.","full_name":"Reid, T."},{"first_name":"B.W.","last_name":"Brock","full_name":"Brock, B.W."}],"oa_version":"Published Version","quality_controlled":"1","article_processing_charge":"No","volume":94,"language":[{"iso":"eng"}],"month":"08","publication_identifier":{"issn":["0309-1708"]},"main_file_link":[{"url":"https://doi.org/10.1016/j.advwatres.2016.05.001","open_access":"1"}],"status":"public","type":"journal_article","_id":"12620","article_type":"original","date_created":"2023-02-20T08:15:11Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"M. Carenzo, F. Pellicciotti, J. Mabillard, T. Reid, B.W. Brock, Advances in Water Resources 94 (2016) 457–469.","mla":"Carenzo, M., et al. “An Enhanced Temperature Index Model for Debris-Covered Glaciers Accounting for Thickness Effect.” <i>Advances in Water Resources</i>, vol. 94, Elsevier, 2016, pp. 457–69, doi:<a href=\"https://doi.org/10.1016/j.advwatres.2016.05.001\">10.1016/j.advwatres.2016.05.001</a>.","ista":"Carenzo M, Pellicciotti F, Mabillard J, Reid T, Brock BW. 2016. An enhanced temperature index model for debris-covered glaciers accounting for thickness effect. Advances in Water Resources. 94, 457–469.","chicago":"Carenzo, M., Francesca Pellicciotti, J. Mabillard, T. Reid, and B.W. Brock. “An Enhanced Temperature Index Model for Debris-Covered Glaciers Accounting for Thickness Effect.” <i>Advances in Water Resources</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.advwatres.2016.05.001\">https://doi.org/10.1016/j.advwatres.2016.05.001</a>.","ama":"Carenzo M, Pellicciotti F, Mabillard J, Reid T, Brock BW. An enhanced temperature index model for debris-covered glaciers accounting for thickness effect. <i>Advances in Water Resources</i>. 2016;94:457-469. doi:<a href=\"https://doi.org/10.1016/j.advwatres.2016.05.001\">10.1016/j.advwatres.2016.05.001</a>","apa":"Carenzo, M., Pellicciotti, F., Mabillard, J., Reid, T., &#38; Brock, B. W. (2016). An enhanced temperature index model for debris-covered glaciers accounting for thickness effect. <i>Advances in Water Resources</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.advwatres.2016.05.001\">https://doi.org/10.1016/j.advwatres.2016.05.001</a>","ieee":"M. Carenzo, F. Pellicciotti, J. Mabillard, T. Reid, and B. W. Brock, “An enhanced temperature index model for debris-covered glaciers accounting for thickness effect,” <i>Advances in Water Resources</i>, vol. 94. Elsevier, pp. 457–469, 2016."},"date_updated":"2023-02-24T10:33:41Z","extern":"1","title":"An enhanced temperature index model for debris-covered glaciers accounting for thickness effect","publisher":"Elsevier","date_published":"2016-08-01T00:00:00Z","abstract":[{"text":"Debris-covered glaciers are increasingly studied because it is assumed that debris cover extent and thickness could increase in a warming climate, with more regular rockfalls from the surrounding slopes and more englacial melt-out material. Debris energy-balance models have been developed to account for the melt rate enhancement/reduction due to a thin/thick debris layer, respectively. However, such models require a large amount of input data that are not often available, especially in remote mountain areas such as the Himalaya, and can be difficult to extrapolate. Due to their lower data requirements, empirical models have been used extensively in clean glacier melt modelling. For debris-covered glaciers, however, they generally simplify the debris effect by using a single melt-reduction factor which does not account for the influence of varying debris thickness on melt and prescribe a constant reduction for the entire melt across a glacier.\r\n\r\nIn this paper, we present a new temperature-index model that accounts for debris thickness in the computation of melt rates at the debris-ice interface. The model empirical parameters are optimized at the point scale for varying debris thicknesses against melt rates simulated by a physically-based debris energy balance model. The latter is validated against ablation stake readings and surface temperature measurements. Each parameter is then related to a plausible set of debris thickness values to provide a general and transferable parameterization. We develop the model on Miage Glacier, Italy, and then test its transferability on Haut Glacier d’Arolla, Switzerland.\r\n\r\nThe performance of the new debris temperature-index (DETI) model in simulating the glacier melt rate at the point scale is comparable to the one of the physically based approach, and the definition of model parameters as a function of debris thickness allows the simulation of the nonlinear relationship of melt rate to debris thickness, summarised by the Østrem curve. Its large number of parameters might be a limitation, but we show that the model is transferable in time and space to a second glacier with little loss of performance. We thus suggest that the new DETI model can be included in continuous mass balance models of debris-covered glaciers, because of its limited data requirements. As such, we expect its application to lead to an improvement in simulations of the debris-covered glacier response to climate in comparison with models that simply recalibrate empirical parameters to prescribe a constant across glacier reduction in melt.","lang":"eng"}],"publication_status":"published","day":"01","doi":"10.1016/j.advwatres.2016.05.001","year":"2016","page":"457-469","oa":1,"publication":"Advances in Water Resources","intvolume":"        94","keyword":["Water Science and Technology"],"scopus_import":"1"},{"oa":1,"page":"185-198","doi":"10.1017/jog.2016.31","year":"2016","day":"01","scopus_import":"1","keyword":["Earth-Surface Processes"],"publication":"Journal of Glaciology","intvolume":"        62","citation":{"chicago":"SHAW, THOMAS E., BEN W. BROCK, CATRIONA L. FYFFE, Francesca Pellicciotti, NICK RUTTER, and FABRIZIO DIOTRI. “Air Temperature Distribution and Energy-Balance Modelling of a Debris-Covered Glacier.” <i>Journal of Glaciology</i>. Cambridge University Press, 2016. <a href=\"https://doi.org/10.1017/jog.2016.31\">https://doi.org/10.1017/jog.2016.31</a>.","ama":"SHAW TE, BROCK BW, FYFFE CL, Pellicciotti F, RUTTER N, DIOTRI F. Air temperature distribution and energy-balance modelling of a debris-covered glacier. <i>Journal of Glaciology</i>. 2016;62(231):185-198. doi:<a href=\"https://doi.org/10.1017/jog.2016.31\">10.1017/jog.2016.31</a>","ista":"SHAW TE, BROCK BW, FYFFE CL, Pellicciotti F, RUTTER N, DIOTRI F. 2016. Air temperature distribution and energy-balance modelling of a debris-covered glacier. Journal of Glaciology. 62(231), 185–198.","apa":"SHAW, T. E., BROCK, B. W., FYFFE, C. L., Pellicciotti, F., RUTTER, N., &#38; DIOTRI, F. (2016). Air temperature distribution and energy-balance modelling of a debris-covered glacier. <i>Journal of Glaciology</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jog.2016.31\">https://doi.org/10.1017/jog.2016.31</a>","ieee":"T. E. SHAW, B. W. BROCK, C. L. FYFFE, F. Pellicciotti, N. RUTTER, and F. DIOTRI, “Air temperature distribution and energy-balance modelling of a debris-covered glacier,” <i>Journal of Glaciology</i>, vol. 62, no. 231. Cambridge University Press, pp. 185–198, 2016.","mla":"SHAW, THOMAS E., et al. “Air Temperature Distribution and Energy-Balance Modelling of a Debris-Covered Glacier.” <i>Journal of Glaciology</i>, vol. 62, no. 231, Cambridge University Press, 2016, pp. 185–98, doi:<a href=\"https://doi.org/10.1017/jog.2016.31\">10.1017/jog.2016.31</a>.","short":"T.E. SHAW, B.W. BROCK, C.L. FYFFE, F. Pellicciotti, N. RUTTER, F. DIOTRI, Journal of Glaciology 62 (2016) 185–198."},"extern":"1","date_updated":"2023-02-24T10:30:03Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"lang":"eng","text":"Near-surface air temperature is an important determinant of the surface energy balance of glaciers and is often represented by a constant linear temperature gradients (TGs) in models. Spatio-temporal variability in 2 m air temperature was measured across the debris-covered Miage Glacier, Italy, over an 89 d period during the 2014 ablation season using a network of 19 stations. Air temperature was found to be strongly dependent upon elevation for most stations, even under varying meteorological conditions and at different times of day, and its spatial variability was well explained by a locally derived mean linear TG (MG–TG) of −0.0088°C m−1. However, local temperature depressions occurred over areas of very thin or patchy debris cover. The MG–TG, together with other air TGs, extrapolated from both on- and off-glacier sites, were applied in a distributed energy-balance model. Compared with piecewise air temperature extrapolation from all on-glacier stations, modelled ablation, using the MG–TG, increased by <1%, increasing to >4% using the environmental ‘lapse rate’. Ice melt under thick debris was relatively insensitive to air temperature, while the effects of different temperature extrapolation methods were strongest at high elevation sites of thin and patchy debris cover."}],"title":"Air temperature distribution and energy-balance modelling of a debris-covered glacier","publisher":"Cambridge University Press","date_published":"2016-02-01T00:00:00Z","article_type":"original","type":"journal_article","_id":"12621","date_created":"2023-02-20T08:15:17Z","publication_identifier":{"eissn":["1727-5652"],"issn":["0022-1430"]},"status":"public","main_file_link":[{"url":"https://doi.org/10.1017/jog.2016.31","open_access":"1"}],"oa_version":"Published Version","author":[{"full_name":"SHAW, THOMAS E.","last_name":"SHAW","first_name":"THOMAS E."},{"first_name":"BEN W.","last_name":"BROCK","full_name":"BROCK, BEN W."},{"full_name":"FYFFE, CATRIONA L.","last_name":"FYFFE","first_name":"CATRIONA L."},{"first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"last_name":"RUTTER","first_name":"NICK","full_name":"RUTTER, NICK"},{"first_name":"FABRIZIO","last_name":"DIOTRI","full_name":"DIOTRI, FABRIZIO"}],"issue":"231","month":"02","volume":62,"article_processing_charge":"No","language":[{"iso":"eng"}]},{"author":[{"full_name":"Heynen, Martin","first_name":"Martin","last_name":"Heynen"},{"first_name":"Evan","last_name":"Miles","full_name":"Miles, Evan"},{"full_name":"Ragettli, Silvan","first_name":"Silvan","last_name":"Ragettli"},{"last_name":"Buri","first_name":"Pascal","full_name":"Buri, Pascal"},{"full_name":"Immerzeel, Walter W.","last_name":"Immerzeel","first_name":"Walter W."},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","first_name":"Francesca"}],"oa_version":"Published Version","quality_controlled":"1","volume":57,"article_processing_charge":"No","language":[{"iso":"eng"}],"issue":"71","month":"03","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/2016AoG71A076"}],"publication_identifier":{"issn":["0260-3055"],"eissn":["1727-5644"]},"article_type":"original","_id":"12622","type":"journal_article","date_created":"2023-02-20T08:15:25Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"M. Heynen, E. Miles, S. Ragettli, P. Buri, W.W. Immerzeel, F. Pellicciotti, Annals of Glaciology 57 (2016) 212–222.","mla":"Heynen, Martin, et al. “Air Temperature Variability in a High-Elevation Himalayan Catchment.” <i>Annals of Glaciology</i>, vol. 57, no. 71, International Glaciological Society, 2016, pp. 212–22, doi:<a href=\"https://doi.org/10.3189/2016aog71a076\">10.3189/2016aog71a076</a>.","ista":"Heynen M, Miles E, Ragettli S, Buri P, Immerzeel WW, Pellicciotti F. 2016. Air temperature variability in a high-elevation Himalayan catchment. Annals of Glaciology. 57(71), 212–222.","ama":"Heynen M, Miles E, Ragettli S, Buri P, Immerzeel WW, Pellicciotti F. Air temperature variability in a high-elevation Himalayan catchment. <i>Annals of Glaciology</i>. 2016;57(71):212-222. doi:<a href=\"https://doi.org/10.3189/2016aog71a076\">10.3189/2016aog71a076</a>","chicago":"Heynen, Martin, Evan Miles, Silvan Ragettli, Pascal Buri, Walter W. Immerzeel, and Francesca Pellicciotti. “Air Temperature Variability in a High-Elevation Himalayan Catchment.” <i>Annals of Glaciology</i>. International Glaciological Society, 2016. <a href=\"https://doi.org/10.3189/2016aog71a076\">https://doi.org/10.3189/2016aog71a076</a>.","apa":"Heynen, M., Miles, E., Ragettli, S., Buri, P., Immerzeel, W. W., &#38; Pellicciotti, F. (2016). Air temperature variability in a high-elevation Himalayan catchment. <i>Annals of Glaciology</i>. International Glaciological Society. <a href=\"https://doi.org/10.3189/2016aog71a076\">https://doi.org/10.3189/2016aog71a076</a>","ieee":"M. Heynen, E. Miles, S. Ragettli, P. Buri, W. W. Immerzeel, and F. Pellicciotti, “Air temperature variability in a high-elevation Himalayan catchment,” <i>Annals of Glaciology</i>, vol. 57, no. 71. International Glaciological Society, pp. 212–222, 2016."},"extern":"1","date_updated":"2023-02-24T10:25:38Z","title":"Air temperature variability in a high-elevation Himalayan catchment","date_published":"2016-03-01T00:00:00Z","publisher":"International Glaciological Society","publication_status":"published","abstract":[{"lang":"eng","text":"Air temperature is a key control of processes affecting snow and glaciers in high-elevation catchments, including melt, snowfall and sublimation. It is therefore a key input variable to models of land–surface–atmosphere interaction. Despite this importance, its spatial variability is poorly understood and simple assumptions are made to extrapolate it from point observations to the catchment scale. We use a dataset of 2.75 years of air temperature measurements (from May 2012 to November 2014) at a network of up to 27 locations in the Langtang River, Nepal, catchment to investigate air temperature seasonality and consistency between years. We use observations from high elevations and from the easternmost section of the basin to corroborate previous findings of shallow lapse rates. Seasonal variability is strong, with shallowest lapse rates during the monsoon season. Diurnal variability is also strong and should be taken into account since processes such as melt have a pronounced diurnal variability. Use of seasonal lapse rates seems crucial for glacio-hydrological modelling, but seasonal lapse rates seem stable over the 2–3 years investigated. Lateral variability at transects across valley is high and dominated by aspect, with south-facing sites being warmer than north-facing sites and deviations from the fitted lapse rates of up to several degrees. Local factors (e.g. topographic shading) can reduce or enhance this effect. The interplay of radiation, aspect and elevation should be further investigated with high-elevation transects."}],"day":"01","page":"212-222","year":"2016","doi":"10.3189/2016aog71a076","oa":1,"publication":"Annals of Glaciology","intvolume":"        57","keyword":["Earth-Surface Processes"],"scopus_import":"1"},{"day":"01","year":"2016","page":"199-211","doi":"10.3189/2016aog71a059","oa":1,"intvolume":"        57","publication":"Annals of Glaciology","scopus_import":"1","keyword":["Earth-Surface Processes"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","date_updated":"2023-02-24T10:20:24Z","citation":{"ieee":"P. Buri, F. Pellicciotti, J. F. Steiner, E. S. Miles, and W. W. Immerzeel, “A grid-based model of backwasting of supraglacial ice cliffs on debris-covered glaciers,” <i>Annals of Glaciology</i>, vol. 57, no. 71. International Glaciological Society, pp. 199–211, 2016.","chicago":"Buri, Pascal, Francesca Pellicciotti, Jakob F. Steiner, Evan S. Miles, and Walter W. Immerzeel. “A Grid-Based Model of Backwasting of Supraglacial Ice Cliffs on Debris-Covered Glaciers.” <i>Annals of Glaciology</i>. International Glaciological Society, 2016. <a href=\"https://doi.org/10.3189/2016aog71a059\">https://doi.org/10.3189/2016aog71a059</a>.","ista":"Buri P, Pellicciotti F, Steiner JF, Miles ES, Immerzeel WW. 2016. A grid-based model of backwasting of supraglacial ice cliffs on debris-covered glaciers. Annals of Glaciology. 57(71), 199–211.","ama":"Buri P, Pellicciotti F, Steiner JF, Miles ES, Immerzeel WW. A grid-based model of backwasting of supraglacial ice cliffs on debris-covered glaciers. <i>Annals of Glaciology</i>. 2016;57(71):199-211. doi:<a href=\"https://doi.org/10.3189/2016aog71a059\">10.3189/2016aog71a059</a>","apa":"Buri, P., Pellicciotti, F., Steiner, J. F., Miles, E. S., &#38; Immerzeel, W. W. (2016). A grid-based model of backwasting of supraglacial ice cliffs on debris-covered glaciers. <i>Annals of Glaciology</i>. International Glaciological Society. <a href=\"https://doi.org/10.3189/2016aog71a059\">https://doi.org/10.3189/2016aog71a059</a>","short":"P. Buri, F. Pellicciotti, J.F. Steiner, E.S. Miles, W.W. Immerzeel, Annals of Glaciology 57 (2016) 199–211.","mla":"Buri, Pascal, et al. “A Grid-Based Model of Backwasting of Supraglacial Ice Cliffs on Debris-Covered Glaciers.” <i>Annals of Glaciology</i>, vol. 57, no. 71, International Glaciological Society, 2016, pp. 199–211, doi:<a href=\"https://doi.org/10.3189/2016aog71a059\">10.3189/2016aog71a059</a>."},"date_published":"2016-03-01T00:00:00Z","publisher":"International Glaciological Society","title":"A grid-based model of backwasting of supraglacial ice cliffs on debris-covered glaciers","publication_status":"published","abstract":[{"lang":"eng","text":"Ice cliffs might be partly responsible for the high mass losses of debris-covered glaciers in the Hindu Kush-Karakoram-Himalaya region. The few existing models of cliff backwasting are point-scale models applied at few locations or assume cliffs to be planes with constant slope and aspect, a major simplification given the complex surfaces of most cliffs. We develop the first grid-based model of cliff backwasting for two cliffs on debris-covered Lirung Glacier, Nepal. The model includes an improved representation of shortwave and longwave radiation, and their interplay with the glacier topography. Shortwave radiation varies considerably across the two cliffs, mostly due to direct radiation. Diffuse radiation is the major shortwave component, as the direct component is strongly reduced by the cliffs’ aspect and slope through self-shading. Incoming longwave radiation is higher than the total incoming shortwave flux, due to radiation emitted by the surrounding terrain, which is 25% of the incoming flux. Melt is highly variable in space, suggesting that simple models provide inaccurate estimates of total melt volumes. Although only representing 0.09% of the glacier tongue area, the total melt at the two cliffs over the measurement period is 2313 and 8282 m<jats:sup>3</jats:sup>, 1.23% of the total melt simulated by a glacio-hydrological model for the glacier’s tongue."}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/2016AoG71A059"}],"publication_identifier":{"eissn":["1727-5644"],"issn":["0260-3055"]},"status":"public","date_created":"2023-02-20T08:15:34Z","article_type":"original","type":"journal_article","_id":"12623","author":[{"first_name":"Pascal","last_name":"Buri","full_name":"Buri, Pascal"},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","first_name":"Francesca"},{"first_name":"Jakob F.","last_name":"Steiner","full_name":"Steiner, Jakob F."},{"first_name":"Evan S.","last_name":"Miles","full_name":"Miles, Evan S."},{"last_name":"Immerzeel","first_name":"Walter W.","full_name":"Immerzeel, Walter W."}],"quality_controlled":"1","oa_version":"Published Version","language":[{"iso":"eng"}],"volume":57,"article_processing_charge":"No","month":"03","issue":"71"},{"oa":1,"day":"01","year":"2016","page":"29-40","doi":"10.3189/2016aog71a421","scopus_import":"1","keyword":["Earth-Surface Processes"],"publication":"Annals of Glaciology","intvolume":"        57","citation":{"ieee":"E. S. Miles, F. Pellicciotti, I. C. Willis, J. F. Steiner, P. Buri, and N. S. Arnold, “Refined energy-balance modelling of a supraglacial pond, Langtang Khola, Nepal,” <i>Annals of Glaciology</i>, vol. 57, no. 71. International Glaciological Society, pp. 29–40, 2016.","ista":"Miles ES, Pellicciotti F, Willis IC, Steiner JF, Buri P, Arnold NS. 2016. Refined energy-balance modelling of a supraglacial pond, Langtang Khola, Nepal. Annals of Glaciology. 57(71), 29–40.","chicago":"Miles, Evan S., Francesca Pellicciotti, Ian C. Willis, Jakob F. Steiner, Pascal Buri, and Neil S. Arnold. “Refined Energy-Balance Modelling of a Supraglacial Pond, Langtang Khola, Nepal.” <i>Annals of Glaciology</i>. International Glaciological Society, 2016. <a href=\"https://doi.org/10.3189/2016aog71a421\">https://doi.org/10.3189/2016aog71a421</a>.","ama":"Miles ES, Pellicciotti F, Willis IC, Steiner JF, Buri P, Arnold NS. Refined energy-balance modelling of a supraglacial pond, Langtang Khola, Nepal. <i>Annals of Glaciology</i>. 2016;57(71):29-40. doi:<a href=\"https://doi.org/10.3189/2016aog71a421\">10.3189/2016aog71a421</a>","apa":"Miles, E. S., Pellicciotti, F., Willis, I. C., Steiner, J. F., Buri, P., &#38; Arnold, N. S. (2016). Refined energy-balance modelling of a supraglacial pond, Langtang Khola, Nepal. <i>Annals of Glaciology</i>. International Glaciological Society. <a href=\"https://doi.org/10.3189/2016aog71a421\">https://doi.org/10.3189/2016aog71a421</a>","mla":"Miles, Evan S., et al. “Refined Energy-Balance Modelling of a Supraglacial Pond, Langtang Khola, Nepal.” <i>Annals of Glaciology</i>, vol. 57, no. 71, International Glaciological Society, 2016, pp. 29–40, doi:<a href=\"https://doi.org/10.3189/2016aog71a421\">10.3189/2016aog71a421</a>.","short":"E.S. Miles, F. Pellicciotti, I.C. Willis, J.F. Steiner, P. Buri, N.S. Arnold, Annals of Glaciology 57 (2016) 29–40."},"extern":"1","date_updated":"2023-02-24T10:17:29Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"lang":"eng","text":"Supraglacial ponds on debris-covered glaciers present a mechanism of atmosphere/glacier energy transfer that is poorly studied, and only conceptually included in mass-balance studies of debris-covered glaciers. This research advances previous efforts to develop a model of mass and energy balance for supraglacial ponds by applying a free-convection approach to account for energy exchanges at the subaqueous bare-ice surfaces. We develop the model using field data from a pond on Lirung Glacier, Nepal, that was monitored during the 2013 and 2014 monsoon periods. Sensitivity testing is performed for several key parameters, and alternative melt algorithms are compared with the model. The pond acts as a significant recipient of energy for the glacier system, and actively participates in the glacier’s hydrologic system during the monsoon. Melt rates are 2-4 cm d-1 (total of 98.5 m3 over the study period) for bare ice in contact with the pond, and <1 mmd-1 (total of 10.6m3) for the saturated debris zone. The majority of absorbed atmospheric energy leaves the pond system through englacial conduits, delivering sufficient energy to melt 2612 m3 additional ice over the study period (38.4 m3 d-1). Such melting might be expected to lead to subsidence of the glacier surface. Supraglacial ponds efficiently convey atmospheric energy to the glacier’s interior and rapidly promote the downwasting process."}],"title":"Refined energy-balance modelling of a supraglacial pond, Langtang Khola, Nepal","publisher":"International Glaciological Society","date_published":"2016-03-01T00:00:00Z","article_type":"original","type":"journal_article","_id":"12624","date_created":"2023-02-20T08:15:42Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/2016AoG71A421"}],"status":"public","publication_identifier":{"eissn":["1727-5644"],"issn":["0260-3055"]},"oa_version":"Published Version","quality_controlled":"1","author":[{"full_name":"Miles, Evan S.","first_name":"Evan S.","last_name":"Miles"},{"last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"full_name":"Willis, Ian C.","first_name":"Ian C.","last_name":"Willis"},{"full_name":"Steiner, Jakob F.","last_name":"Steiner","first_name":"Jakob F."},{"full_name":"Buri, Pascal","first_name":"Pascal","last_name":"Buri"},{"full_name":"Arnold, Neil S.","first_name":"Neil S.","last_name":"Arnold"}],"issue":"71","month":"03","volume":57,"article_processing_charge":"No","language":[{"iso":"eng"}]},{"author":[{"full_name":"Kraaijenbrink, Philip","first_name":"Philip","last_name":"Kraaijenbrink"},{"full_name":"Meijer, Sander W.","first_name":"Sander W.","last_name":"Meijer"},{"last_name":"Shea","first_name":"Joseph M.","full_name":"Shea, Joseph M."},{"first_name":"Francesca","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"first_name":"Steven M.","last_name":"De Jong","full_name":"De Jong, Steven M."},{"first_name":"Walter W.","last_name":"Immerzeel","full_name":"Immerzeel, Walter W."}],"oa_version":"Published Version","quality_controlled":"1","article_processing_charge":"No","volume":57,"language":[{"iso":"eng"}],"issue":"71","month":"03","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/2016AoG71A072"}],"publication_identifier":{"issn":["0260-3055"],"eissn":["1727-5644"]},"type":"journal_article","_id":"12625","article_type":"original","date_created":"2023-02-20T08:15:56Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"P. Kraaijenbrink, S.W. Meijer, J.M. Shea, F. Pellicciotti, S.M. De Jong, W.W. Immerzeel, Annals of Glaciology 57 (2016) 103–113.","mla":"Kraaijenbrink, Philip, et al. “Seasonal Surface Velocities of a Himalayan Glacier Derived by Automated Correlation of Unmanned Aerial Vehicle Imagery.” <i>Annals of Glaciology</i>, vol. 57, no. 71, International Glaciological Society, 2016, pp. 103–13, doi:<a href=\"https://doi.org/10.3189/2016aog71a072\">10.3189/2016aog71a072</a>.","ieee":"P. Kraaijenbrink, S. W. Meijer, J. M. Shea, F. Pellicciotti, S. M. De Jong, and W. W. Immerzeel, “Seasonal surface velocities of a Himalayan glacier derived by automated correlation of unmanned aerial vehicle imagery,” <i>Annals of Glaciology</i>, vol. 57, no. 71. International Glaciological Society, pp. 103–113, 2016.","chicago":"Kraaijenbrink, Philip, Sander W. Meijer, Joseph M. Shea, Francesca Pellicciotti, Steven M. De Jong, and Walter W. Immerzeel. “Seasonal Surface Velocities of a Himalayan Glacier Derived by Automated Correlation of Unmanned Aerial Vehicle Imagery.” <i>Annals of Glaciology</i>. International Glaciological Society, 2016. <a href=\"https://doi.org/10.3189/2016aog71a072\">https://doi.org/10.3189/2016aog71a072</a>.","ista":"Kraaijenbrink P, Meijer SW, Shea JM, Pellicciotti F, De Jong SM, Immerzeel WW. 2016. Seasonal surface velocities of a Himalayan glacier derived by automated correlation of unmanned aerial vehicle imagery. Annals of Glaciology. 57(71), 103–113.","ama":"Kraaijenbrink P, Meijer SW, Shea JM, Pellicciotti F, De Jong SM, Immerzeel WW. Seasonal surface velocities of a Himalayan glacier derived by automated correlation of unmanned aerial vehicle imagery. <i>Annals of Glaciology</i>. 2016;57(71):103-113. doi:<a href=\"https://doi.org/10.3189/2016aog71a072\">10.3189/2016aog71a072</a>","apa":"Kraaijenbrink, P., Meijer, S. W., Shea, J. M., Pellicciotti, F., De Jong, S. M., &#38; Immerzeel, W. W. (2016). Seasonal surface velocities of a Himalayan glacier derived by automated correlation of unmanned aerial vehicle imagery. <i>Annals of Glaciology</i>. International Glaciological Society. <a href=\"https://doi.org/10.3189/2016aog71a072\">https://doi.org/10.3189/2016aog71a072</a>"},"date_updated":"2023-02-24T10:11:46Z","extern":"1","title":"Seasonal surface velocities of a Himalayan glacier derived by automated correlation of unmanned aerial vehicle imagery","date_published":"2016-03-01T00:00:00Z","publisher":"International Glaciological Society","abstract":[{"text":"Debris-covered glaciers play an important role in the high-altitude water cycle in the Himalaya, yet their dynamics are poorly understood, partly because of the difficult fieldwork conditions. In this study we therefore deploy an unmanned aerial vehicle (UAV) three times (May 2013, October 2013 and May 2014) over the debris-covered Lirung Glacier in Nepal. The acquired data are processed into orthomosaics and elevation models by a Structure from Motion workflow, and seasonal surface velocity is derived using frequency cross-correlation. In order to obtain optimal surface velocity products, the effects of different input data and correlator configurations are evaluated, which reveals that the orthomosaic as input paired with moderate correlator settings provides the best results. The glacier has considerable spatial and seasonal differences in surface velocity, with maximum summer and winter velocities 6 and 2.5 m a-1, respectively, in the upper part of the tongue, while the lower part is nearly stagnant. It is hypothesized that the higher velocities during summer are caused by basal sliding due to increased lubrication of the bed. We conclude that UAVs have great potential to quantify seasonal and annual variations in flow and can help to further our understanding of debris-covered glaciers.","lang":"eng"}],"publication_status":"published","year":"2016","doi":"10.3189/2016aog71a072","page":"103-113","day":"01","oa":1,"publication":"Annals of Glaciology","intvolume":"        57","keyword":["Earth-Surface Processes"],"scopus_import":"1"},{"date_created":"2018-12-11T11:51:01Z","_id":"1263","type":"journal_article","status":"public","main_file_link":[{"url":"https://doi.org/10.1364/OPTICA.3.000597","open_access":"1"}],"quality_controlled":"1","oa_version":"Published Version","author":[{"full_name":"Rueda, Alfredo","first_name":"Alfredo","last_name":"Rueda"},{"last_name":"Sedlmeir","first_name":"Florian","full_name":"Sedlmeir, Florian"},{"full_name":"Collodo, Michele","first_name":"Michele","last_name":"Collodo"},{"first_name":"Ulrich","last_name":"Vogl","full_name":"Vogl, Ulrich"},{"full_name":"Stiller, Birgit","first_name":"Birgit","last_name":"Stiller"},{"last_name":"Schunk","first_name":"Gerhard","full_name":"Schunk, Gerhard"},{"full_name":"Strekalov, Dmitry","last_name":"Strekalov","first_name":"Dmitry"},{"full_name":"Marquardt, Christoph","first_name":"Christoph","last_name":"Marquardt"},{"last_name":"Fink","first_name":"Johannes M","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Fink, Johannes M"},{"first_name":"Oskar","last_name":"Painter","full_name":"Painter, Oskar"},{"full_name":"Leuchs, Gerd","first_name":"Gerd","last_name":"Leuchs"},{"full_name":"Schwefel, Harald","first_name":"Harald","last_name":"Schwefel"}],"month":"06","issue":"6","language":[{"iso":"eng"}],"article_processing_charge":"No","volume":3,"oa":1,"acknowledgement":"Alexander von Humboldt Foundation; Studienstiftung des Deutschen Volkes. We would like to acknowledge our stimulating discussions with Konrad Lehnert and Alessandro Pitanti.","day":"20","doi":"10.1364/OPTICA.3.000597","year":"2016","page":"597 - 604","scopus_import":"1","intvolume":"         3","publist_id":"6061","publication":"Optica","date_updated":"2023-10-17T12:17:15Z","department":[{"_id":"JoFi"}],"citation":{"ieee":"A. Rueda <i>et al.</i>, “Efficient microwave to optical photon conversion: An electro-optical realization,” <i>Optica</i>, vol. 3, no. 6. Optica Publishing Group, pp. 597–604, 2016.","apa":"Rueda, A., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk, G., … Schwefel, H. (2016). Efficient microwave to optical photon conversion: An electro-optical realization. <i>Optica</i>. Optica Publishing Group. <a href=\"https://doi.org/10.1364/OPTICA.3.000597\">https://doi.org/10.1364/OPTICA.3.000597</a>","ista":"Rueda A, Sedlmeir F, Collodo M, Vogl U, Stiller B, Schunk G, Strekalov D, Marquardt C, Fink JM, Painter O, Leuchs G, Schwefel H. 2016. Efficient microwave to optical photon conversion: An electro-optical realization. Optica. 3(6), 597–604.","ama":"Rueda A, Sedlmeir F, Collodo M, et al. Efficient microwave to optical photon conversion: An electro-optical realization. <i>Optica</i>. 2016;3(6):597-604. doi:<a href=\"https://doi.org/10.1364/OPTICA.3.000597\">10.1364/OPTICA.3.000597</a>","chicago":"Rueda, Alfredo, Florian Sedlmeir, Michele Collodo, Ulrich Vogl, Birgit Stiller, Gerhard Schunk, Dmitry Strekalov, et al. “Efficient Microwave to Optical Photon Conversion: An Electro-Optical Realization.” <i>Optica</i>. Optica Publishing Group, 2016. <a href=\"https://doi.org/10.1364/OPTICA.3.000597\">https://doi.org/10.1364/OPTICA.3.000597</a>.","short":"A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, Optica 3 (2016) 597–604.","mla":"Rueda, Alfredo, et al. “Efficient Microwave to Optical Photon Conversion: An Electro-Optical Realization.” <i>Optica</i>, vol. 3, no. 6, Optica Publishing Group, 2016, pp. 597–604, doi:<a href=\"https://doi.org/10.1364/OPTICA.3.000597\">10.1364/OPTICA.3.000597</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Linking classical microwave electrical circuits to the optical telecommunication band is at the core of modern communication. Future quantum information networks will require coherent microwave-to-optical conversion to link electronic quantum processors and memories via low-loss optical telecommunication networks. Efficient conversion can be achieved with electro-optical modulators operating at the single microwave photon level. In the standard electro-optic modulation scheme, this is impossible because both up- and down-converted sidebands are necessarily present. Here, we demonstrate true single-sideband up- or down-conversion in a triply resonant whispering gallery mode resonator by explicitly addressing modes with asymmetric free spectral range. Compared to previous experiments, we show a 3 orders of magnitude improvement of the electro-optical conversion efficiency, reaching 0.1% photon number conversion for a 10 GHz microwave tone at 0.42 mW of optical pump power. The presented scheme is fully compatible with existing superconducting 3D circuit quantum electrodynamics technology and can be used for nonclassical state conversion and communication. Our conversion bandwidth is larger than 1 MHz and is not fundamentally limited."}],"publication_status":"published","publisher":"Optica Publishing Group","date_published":"2016-06-20T00:00:00Z","title":"Efficient microwave to optical photon conversion: An electro-optical realization"},{"oa_version":"Submitted Version","quality_controlled":"1","project":[{"call_identifier":"FP7","grant_number":"282300","_id":"25716A02-B435-11E9-9278-68D0E5697425","name":"Polarity and subcellular dynamics in plants"}],"author":[{"first_name":"Gloria","last_name":"Sancho Andrés","full_name":"Sancho Andrés, Gloria"},{"full_name":"Soriano Ortega, Esther","first_name":"Esther","last_name":"Soriano Ortega"},{"full_name":"Gao, Caiji","first_name":"Caiji","last_name":"Gao"},{"full_name":"Bernabé Orts, Joan","last_name":"Bernabé Orts","first_name":"Joan"},{"full_name":"Narasimhan, Madhumitha","id":"44BF24D0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8600-0671","last_name":"Narasimhan","first_name":"Madhumitha"},{"last_name":"Müller","first_name":"Anna","full_name":"Müller, Anna","id":"420AB15A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Tejos, Ricardo","last_name":"Tejos","first_name":"Ricardo"},{"first_name":"Liwen","last_name":"Jiang","full_name":"Jiang, Liwen"},{"full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","first_name":"Jirí","last_name":"Friml"},{"full_name":"Aniento, Fernando","first_name":"Fernando","last_name":"Aniento"},{"first_name":"Maria","last_name":"Marcote","full_name":"Marcote, Maria"}],"issue":"3","month":"07","volume":171,"language":[{"iso":"eng"}],"type":"journal_article","_id":"1264","date_created":"2018-12-11T11:51:01Z","status":"public","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936568/","open_access":"1"}],"ec_funded":1,"citation":{"mla":"Sancho Andrés, Gloria, et al. “Sorting Motifs Involved in the Trafficking and Localization of the PIN1 Auxin Efflux Carrier.” <i>Plant Physiology</i>, vol. 171, no. 3, American Society of Plant Biologists, 2016, pp. 1965–82, doi:<a href=\"https://doi.org/10.1104/pp.16.00373\">10.1104/pp.16.00373</a>.","short":"G. Sancho Andrés, E. Soriano Ortega, C. Gao, J. Bernabé Orts, M. Narasimhan, A. Müller, R. Tejos, L. Jiang, J. Friml, F. Aniento, M. Marcote, Plant Physiology 171 (2016) 1965–1982.","ista":"Sancho Andrés G, Soriano Ortega E, Gao C, Bernabé Orts J, Narasimhan M, Müller A, Tejos R, Jiang L, Friml J, Aniento F, Marcote M. 2016. Sorting motifs involved in the trafficking and localization of the PIN1 auxin efflux carrier. Plant Physiology. 171(3), 1965–1982.","chicago":"Sancho Andrés, Gloria, Esther Soriano Ortega, Caiji Gao, Joan Bernabé Orts, Madhumitha Narasimhan, Anna Müller, Ricardo Tejos, et al. “Sorting Motifs Involved in the Trafficking and Localization of the PIN1 Auxin Efflux Carrier.” <i>Plant Physiology</i>. American Society of Plant Biologists, 2016. <a href=\"https://doi.org/10.1104/pp.16.00373\">https://doi.org/10.1104/pp.16.00373</a>.","ama":"Sancho Andrés G, Soriano Ortega E, Gao C, et al. Sorting motifs involved in the trafficking and localization of the PIN1 auxin efflux carrier. <i>Plant Physiology</i>. 2016;171(3):1965-1982. doi:<a href=\"https://doi.org/10.1104/pp.16.00373\">10.1104/pp.16.00373</a>","apa":"Sancho Andrés, G., Soriano Ortega, E., Gao, C., Bernabé Orts, J., Narasimhan, M., Müller, A., … Marcote, M. (2016). Sorting motifs involved in the trafficking and localization of the PIN1 auxin efflux carrier. <i>Plant Physiology</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1104/pp.16.00373\">https://doi.org/10.1104/pp.16.00373</a>","ieee":"G. Sancho Andrés <i>et al.</i>, “Sorting motifs involved in the trafficking and localization of the PIN1 auxin efflux carrier,” <i>Plant Physiology</i>, vol. 171, no. 3. American Society of Plant Biologists, pp. 1965–1982, 2016."},"department":[{"_id":"JiFr"},{"_id":"EvBe"}],"date_updated":"2021-01-12T06:49:29Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publication_status":"published","abstract":[{"lang":"eng","text":"n contrast with the wealth of recent reports about the function of μ-adaptins and clathrin adaptor protein (AP) complexes, there is very little information about the motifs that determine the sorting of membrane proteins within clathrin-coated vesicles in plants. Here, we investigated putative sorting signals in the large cytosolic loop of the Arabidopsis (Arabidopsis thaliana) PIN-FORMED1 (PIN1) auxin transporter, which are involved in binding μ-adaptins and thus in PIN1 trafficking and localization. We found that Phe-165 and Tyr-280, Tyr-328, and Tyr-394 are involved in the binding of different μ-adaptins in vitro. However, only Phe-165, which binds μA(μ2)- and μD(μ3)-adaptin, was found to be essential for PIN1 trafficking and localization in vivo. The PIN1:GFP-F165A mutant showed reduced endocytosis but also localized to intracellular structures containing several layers of membranes and endoplasmic reticulum (ER) markers, suggesting that they correspond to ER or ER-derived membranes. While PIN1:GFP localized normally in a μA (μ2)-adaptin mutant, it accumulated in big intracellular structures containing LysoTracker in a μD (μ3)-adaptin mutant, consistent with previous results obtained with mutants of other subunits of the AP-3 complex. Our data suggest that Phe-165, through the binding of μA (μ2)- and μD (μ3)-adaptin, is important for PIN1 endocytosis and for PIN1 trafficking along the secretory pathway, respectively."}],"title":"Sorting motifs involved in the trafficking and localization of the PIN1 auxin efflux carrier","date_published":"2016-07-01T00:00:00Z","publisher":"American Society of Plant Biologists","oa":1,"day":"01","year":"2016","page":"1965 - 1982","doi":"10.1104/pp.16.00373","acknowledgement":"We thank Dr. R. Offringa (Leiden University) for providing the GST-\r\nPIN-CL construct; Sandra Richter and Gerd Jurgens (University of Tübin-\r\ngen) for providing the estradiol-inducible PIN1-RFP construct and the\r\ngnl1 mutant expressing BFA-sensitive GNL1; F.J. Santonja (University of Valencia)\r\nfor help with the statistical analysis; Jurgen Kleine-Vehn, Elke Barbez, and\r\nEva Benkova for helpful discussions; the Salk Institute Genomic Analysis\r\nLaboratory for providing the sequence-indexed Arabidopsis T-DNA in-\r\nsertion mutants; and the greenhouse section and the microscopy section\r\nof SCSIE (University of Valencia) and Pilar Selvi for excellent technical\r\nassistance.","scopus_import":1,"publication":"Plant Physiology","publist_id":"6059","intvolume":"       171"},{"citation":{"short":"K. Elsayad, S. Werner, M. Gallemi, J. Kong, E. Guajardo, L. Zhang, Y. Jaillais, T. Greb, Y. Belkhadir, Science Signaling 9 (2016).","mla":"Elsayad, Kareem, et al. “Mapping the Subcellular Mechanical Properties of Live Cells in Tissues with Fluorescence Emission-Brillouin Imaging.” <i>Science Signaling</i>, vol. 9, no. 435, rs5, American Association for the Advancement of Science, 2016, doi:<a href=\"https://doi.org/10.1126/scisignal.aaf6326\">10.1126/scisignal.aaf6326</a>.","apa":"Elsayad, K., Werner, S., Gallemi, M., Kong, J., Guajardo, E., Zhang, L., … Belkhadir, Y. (2016). Mapping the subcellular mechanical properties of live cells in tissues with fluorescence emission-Brillouin imaging. <i>Science Signaling</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/scisignal.aaf6326\">https://doi.org/10.1126/scisignal.aaf6326</a>","ista":"Elsayad K, Werner S, Gallemi M, Kong J, Guajardo E, Zhang L, Jaillais Y, Greb T, Belkhadir Y. 2016. Mapping the subcellular mechanical properties of live cells in tissues with fluorescence emission-Brillouin imaging. Science Signaling. 9(435), rs5.","chicago":"Elsayad, Kareem, Stephanie Werner, Marçal Gallemi, Jixiang Kong, Edmundo Guajardo, Lijuan Zhang, Yvon Jaillais, Thomas Greb, and Youssef Belkhadir. “Mapping the Subcellular Mechanical Properties of Live Cells in Tissues with Fluorescence Emission-Brillouin Imaging.” <i>Science Signaling</i>. American Association for the Advancement of Science, 2016. <a href=\"https://doi.org/10.1126/scisignal.aaf6326\">https://doi.org/10.1126/scisignal.aaf6326</a>.","ama":"Elsayad K, Werner S, Gallemi M, et al. Mapping the subcellular mechanical properties of live cells in tissues with fluorescence emission-Brillouin imaging. <i>Science Signaling</i>. 2016;9(435). doi:<a href=\"https://doi.org/10.1126/scisignal.aaf6326\">10.1126/scisignal.aaf6326</a>","ieee":"K. Elsayad <i>et al.</i>, “Mapping the subcellular mechanical properties of live cells in tissues with fluorescence emission-Brillouin imaging,” <i>Science Signaling</i>, vol. 9, no. 435. American Association for the Advancement of Science, 2016."},"oa_version":"None","date_updated":"2021-01-12T06:49:29Z","department":[{"_id":"EvBe"}],"quality_controlled":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Elsayad","first_name":"Kareem","full_name":"Elsayad, Kareem"},{"last_name":"Werner","first_name":"Stephanie","full_name":"Werner, Stephanie"},{"id":"460C6802-F248-11E8-B48F-1D18A9856A87","full_name":"Gallemi Rovira, Marcal","first_name":"Marcal","last_name":"Gallemi Rovira"},{"full_name":"Kong, Jixiang","last_name":"Kong","first_name":"Jixiang"},{"full_name":"Guajardo, Edmundo","last_name":"Guajardo","first_name":"Edmundo"},{"full_name":"Zhang, Lijuan","first_name":"Lijuan","last_name":"Zhang"},{"last_name":"Jaillais","first_name":"Yvon","full_name":"Jaillais, Yvon"},{"full_name":"Greb, Thomas","last_name":"Greb","first_name":"Thomas"},{"full_name":"Belkhadir, Youssef","last_name":"Belkhadir","first_name":"Youssef"}],"issue":"435","article_number":"rs5","abstract":[{"lang":"eng","text":"Extracellular matrices (ECMs) are central to the advent of multicellular life, and their mechanical propertiesare modulated by and impinge on intracellular signaling pathways that regulate vital cellular functions. High spatial-resolution mapping of mechanical properties in live cells is, however, extremely challenging. Thus, our understanding of how signaling pathways process physiological signals to generate appropriate mechanical responses is limited. We introduce fluorescence emission-Brillouin scattering imaging (FBi), a method for the parallel and all-optical measurements of mechanical properties and fluorescence at the submicrometer scale in living organisms. Using FBi, we showed thatchanges in cellular hydrostatic pressure and cytoplasm viscoelasticity modulate the mechanical signatures of plant ECMs. We further established that the measured &quot;stiffness&quot; of plant ECMs is symmetrically patternedin hypocotyl cells undergoing directional growth. Finally, application of this method to Arabidopsis thaliana with photoreceptor mutants revealed that red and far-red light signals are essential modulators of ECM viscoelasticity. By mapping the viscoelastic signatures of a complex ECM, we provide proof of principlefor the organism-wide applicability of FBi for measuring the mechanical outputs of intracellular signaling pathways. As such, our work has implications for investigations of mechanosignaling pathways and developmental biology."}],"month":"07","publication_status":"published","volume":9,"title":"Mapping the subcellular mechanical properties of live cells in tissues with fluorescence emission-Brillouin imaging","publisher":"American Association for the Advancement of Science","date_published":"2016-07-05T00:00:00Z","language":[{"iso":"eng"}],"_id":"1265","type":"journal_article","date_created":"2018-12-11T11:51:02Z","doi":"10.1126/scisignal.aaf6326","status":"public","year":"2016","day":"05","scopus_import":1,"publication":"Science Signaling","intvolume":"         9","publist_id":"6057"},{"ddc":["571"],"abstract":[{"text":"Cortical networks exhibit ‘global oscillations’, in which neural spike times are entrained to an underlying oscillatory rhythm, but where individual neurons fire irregularly, on only a fraction of cycles. While the network dynamics underlying global oscillations have been well characterised, their function is debated. Here, we show that such global oscillations are a direct consequence of optimal efficient coding in spiking networks with synaptic delays and noise. To avoid firing unnecessary spikes, neurons need to share information about the network state. Ideally, membrane potentials should be strongly correlated and reflect a ‘prediction error’ while the spikes themselves are uncorrelated and occur rarely. We show that the most efficient representation is when: (i) spike times are entrained to a global Gamma rhythm (implying a consistent representation of the error); but (ii) few neurons fire on each cycle (implying high efficiency), while (iii) excitation and inhibition are tightly balanced. This suggests that cortical networks exhibiting such dynamics are tuned to achieve a maximally efficient population code.","lang":"eng"}],"publication_status":"published","title":"Neural oscillations as a signature of efficient coding in the presence of synaptic delays","date_published":"2016-07-01T00:00:00Z","file_date_updated":"2020-07-14T12:44:42Z","publisher":"eLife Sciences Publications","citation":{"short":"M.J. Chalk, B. Gutkin, S. Denève, ELife 5 (2016).","mla":"Chalk, Matthew J., et al. “Neural Oscillations as a Signature of Efficient Coding in the Presence of Synaptic Delays.” <i>ELife</i>, vol. 5, no. 2016JULY, e13824, eLife Sciences Publications, 2016, doi:<a href=\"https://doi.org/10.7554/eLife.13824\">10.7554/eLife.13824</a>.","ieee":"M. J. Chalk, B. Gutkin, and S. Denève, “Neural oscillations as a signature of efficient coding in the presence of synaptic delays,” <i>eLife</i>, vol. 5, no. 2016JULY. eLife Sciences Publications, 2016.","chicago":"Chalk, Matthew J, Boris Gutkin, and Sophie Denève. “Neural Oscillations as a Signature of Efficient Coding in the Presence of Synaptic Delays.” <i>ELife</i>. eLife Sciences Publications, 2016. <a href=\"https://doi.org/10.7554/eLife.13824\">https://doi.org/10.7554/eLife.13824</a>.","ama":"Chalk MJ, Gutkin B, Denève S. Neural oscillations as a signature of efficient coding in the presence of synaptic delays. <i>eLife</i>. 2016;5(2016JULY). doi:<a href=\"https://doi.org/10.7554/eLife.13824\">10.7554/eLife.13824</a>","ista":"Chalk MJ, Gutkin B, Denève S. 2016. Neural oscillations as a signature of efficient coding in the presence of synaptic delays. eLife. 5(2016JULY), e13824.","apa":"Chalk, M. J., Gutkin, B., &#38; Denève, S. (2016). Neural oscillations as a signature of efficient coding in the presence of synaptic delays. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.13824\">https://doi.org/10.7554/eLife.13824</a>"},"date_updated":"2021-01-12T06:49:30Z","department":[{"_id":"GaTk"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","scopus_import":1,"publication":"eLife","intvolume":"         5","publist_id":"6056","oa":1,"year":"2016","day":"01","doi":"10.7554/eLife.13824","acknowledgement":"Boris Gutkin acknowledges funding by the Russian Academic Excellence Project '5-100’.","issue":"2016JULY","article_number":"e13824","file":[{"relation":"main_file","checksum":"dc52d967dc76174477bb258d84be2899","file_id":"4874","creator":"system","access_level":"open_access","file_size":2819055,"content_type":"application/pdf","date_created":"2018-12-12T10:11:20Z","date_updated":"2020-07-14T12:44:42Z","file_name":"IST-2016-700-v1+1_e13824-download.pdf"}],"month":"07","has_accepted_license":"1","volume":5,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"full_name":"Chalk, Matthew J","id":"2BAAC544-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7782-4436","first_name":"Matthew J","last_name":"Chalk"},{"first_name":"Boris","last_name":"Gutkin","full_name":"Gutkin, Boris"},{"full_name":"Denève, Sophie","last_name":"Denève","first_name":"Sophie"}],"pubrep_id":"700","_id":"1266","type":"journal_article","date_created":"2018-12-11T11:51:02Z","status":"public"},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Frank R, Killip R, Nam P. Nonexistence of large nuclei in the liquid drop model. <i>Letters in Mathematical Physics</i>. 2016;106(8):1033-1036. doi:<a href=\"https://doi.org/10.1007/s11005-016-0860-8\">10.1007/s11005-016-0860-8</a>","chicago":"Frank, Rupert, Rowan Killip, and Phan Nam. “Nonexistence of Large Nuclei in the Liquid Drop Model.” <i>Letters in Mathematical Physics</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s11005-016-0860-8\">https://doi.org/10.1007/s11005-016-0860-8</a>.","ista":"Frank R, Killip R, Nam P. 2016. Nonexistence of large nuclei in the liquid drop model. Letters in Mathematical Physics. 106(8), 1033–1036.","apa":"Frank, R., Killip, R., &#38; Nam, P. (2016). Nonexistence of large nuclei in the liquid drop model. <i>Letters in Mathematical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s11005-016-0860-8\">https://doi.org/10.1007/s11005-016-0860-8</a>","ieee":"R. Frank, R. Killip, and P. Nam, “Nonexistence of large nuclei in the liquid drop model,” <i>Letters in Mathematical Physics</i>, vol. 106, no. 8. Springer, pp. 1033–1036, 2016.","short":"R. Frank, R. Killip, P. Nam, Letters in Mathematical Physics 106 (2016) 1033–1036.","mla":"Frank, Rupert, et al. “Nonexistence of Large Nuclei in the Liquid Drop Model.” <i>Letters in Mathematical Physics</i>, vol. 106, no. 8, Springer, 2016, pp. 1033–36, doi:<a href=\"https://doi.org/10.1007/s11005-016-0860-8\">10.1007/s11005-016-0860-8</a>."},"department":[{"_id":"RoSe"}],"date_updated":"2021-01-12T06:49:30Z","title":"Nonexistence of large nuclei in the liquid drop model","publisher":"Springer","file_date_updated":"2020-07-14T12:44:42Z","date_published":"2016-08-01T00:00:00Z","ddc":["510","539"],"publication_status":"published","abstract":[{"lang":"eng","text":"We give a simplified proof of the nonexistence of large nuclei in the liquid drop model and provide an explicit bound. Our bound is within a factor of 2.3 of the conjectured value and seems to be the first quantitative result."}],"page":"1033 - 1036","day":"01","doi":"10.1007/s11005-016-0860-8","year":"2016","acknowledgement":"Open access funding provided by Institute of Science and Technology Austria.\r\n","oa":1,"publication":"Letters in Mathematical Physics","publist_id":"6054","intvolume":"       106","scopus_import":1,"author":[{"first_name":"Rupert","last_name":"Frank","full_name":"Frank, Rupert"},{"first_name":"Rowan","last_name":"Killip","full_name":"Killip, Rowan"},{"first_name":"Phan","last_name":"Nam","id":"404092F4-F248-11E8-B48F-1D18A9856A87","full_name":"Nam, Phan"}],"oa_version":"Published Version","project":[{"call_identifier":"FWF","_id":"25C878CE-B435-11E9-9278-68D0E5697425","grant_number":"P27533_N27","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"quality_controlled":"1","volume":106,"language":[{"iso":"eng"}],"file":[{"relation":"main_file","creator":"system","file_id":"4863","checksum":"d740a6a226e0f5f864f40e3e269d3cc0","file_size":349464,"access_level":"open_access","content_type":"application/pdf","date_updated":"2020-07-14T12:44:42Z","date_created":"2018-12-12T10:11:09Z","file_name":"IST-2016-698-v1+1_s11005-016-0860-8.pdf"}],"issue":"8","month":"08","has_accepted_license":"1","status":"public","type":"journal_article","_id":"1267","date_created":"2018-12-11T11:51:02Z","pubrep_id":"698"},{"intvolume":"        28","publist_id":"6053","publication":"Seminars in Immunology","scopus_import":1,"acknowledgement":"We would like to thank Mihai Netea for inviting us to contribute to this Theme Issue.","page":"328 - 342","doi":"10.1016/j.smim.2016.05.004","status":"public","year":"2016","day":"01","date_created":"2018-12-11T11:51:03Z","type":"journal_article","_id":"1268","language":[{"iso":"eng"}],"date_published":"2016-08-01T00:00:00Z","publisher":"Academic Press","volume":28,"title":"Immune memory in invertebrates","month":"08","publication_status":"published","issue":"4","author":[{"full_name":"Milutinovic, Barbara","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8214-4758","last_name":"Milutinovic","first_name":"Barbara"},{"first_name":"Joachim","last_name":"Kurtz","full_name":"Kurtz, Joachim"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T06:49:30Z","department":[{"_id":"SyCr"}],"quality_controlled":"1","citation":{"apa":"Milutinovic, B., &#38; Kurtz, J. (2016). Immune memory in invertebrates. <i>Seminars in Immunology</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.smim.2016.05.004\">https://doi.org/10.1016/j.smim.2016.05.004</a>","ista":"Milutinovic B, Kurtz J. 2016. Immune memory in invertebrates. Seminars in Immunology. 28(4), 328–342.","ama":"Milutinovic B, Kurtz J. Immune memory in invertebrates. <i>Seminars in Immunology</i>. 2016;28(4):328-342. doi:<a href=\"https://doi.org/10.1016/j.smim.2016.05.004\">10.1016/j.smim.2016.05.004</a>","chicago":"Milutinovic, Barbara, and Joachim Kurtz. “Immune Memory in Invertebrates.” <i>Seminars in Immunology</i>. Academic Press, 2016. <a href=\"https://doi.org/10.1016/j.smim.2016.05.004\">https://doi.org/10.1016/j.smim.2016.05.004</a>.","ieee":"B. Milutinovic and J. Kurtz, “Immune memory in invertebrates,” <i>Seminars in Immunology</i>, vol. 28, no. 4. Academic Press, pp. 328–342, 2016.","short":"B. Milutinovic, J. Kurtz, Seminars in Immunology 28 (2016) 328–342.","mla":"Milutinovic, Barbara, and Joachim Kurtz. “Immune Memory in Invertebrates.” <i>Seminars in Immunology</i>, vol. 28, no. 4, Academic Press, 2016, pp. 328–42, doi:<a href=\"https://doi.org/10.1016/j.smim.2016.05.004\">10.1016/j.smim.2016.05.004</a>."},"oa_version":"None"},{"scopus_import":1,"publication":"Plant Molecular Biology","publist_id":"6052","intvolume":"        91","oa":1,"doi":"10.1007/s11103-016-0501-8","year":"2016","page":"597","day":"01","ddc":["581"],"publication_status":"published","abstract":[{"lang":"eng","text":"Plants are continuously exposed to a myriad of external signals such as fluctuating nutrients availability, drought, heat, cold, high salinity, or pathogen/pest attacks that can severely affect their development, growth, and fertility. As sessile organisms, plants must therefore be able to sense and rapidly react to these external inputs, activate efficient responses, and adjust development to changing conditions. In recent years, significant progress has been made towards understanding the molecular mechanisms underlying the intricate and complex communication between plants and the environment. It is now becoming increasingly evident that hormones have an important regulatory role in plant adaptation and defense mechanisms."}],"title":"Plant hormones in interactions with the environment","date_published":"2016-08-01T00:00:00Z","file_date_updated":"2020-07-14T12:44:42Z","publisher":"Springer","citation":{"ieee":"E. Benková, “Plant hormones in interactions with the environment,” <i>Plant Molecular Biology</i>, vol. 91, no. 6. Springer, p. 597, 2016.","ista":"Benková E. 2016. Plant hormones in interactions with the environment. Plant Molecular Biology. 91(6), 597.","ama":"Benková E. Plant hormones in interactions with the environment. <i>Plant Molecular Biology</i>. 2016;91(6):597. doi:<a href=\"https://doi.org/10.1007/s11103-016-0501-8\">10.1007/s11103-016-0501-8</a>","chicago":"Benková, Eva. “Plant Hormones in Interactions with the Environment.” <i>Plant Molecular Biology</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s11103-016-0501-8\">https://doi.org/10.1007/s11103-016-0501-8</a>.","apa":"Benková, E. (2016). Plant hormones in interactions with the environment. <i>Plant Molecular Biology</i>. Springer. <a href=\"https://doi.org/10.1007/s11103-016-0501-8\">https://doi.org/10.1007/s11103-016-0501-8</a>","mla":"Benková, Eva. “Plant Hormones in Interactions with the Environment.” <i>Plant Molecular Biology</i>, vol. 91, no. 6, Springer, 2016, p. 597, doi:<a href=\"https://doi.org/10.1007/s11103-016-0501-8\">10.1007/s11103-016-0501-8</a>.","short":"E. Benková, Plant Molecular Biology 91 (2016) 597."},"department":[{"_id":"EvBe"}],"date_updated":"2021-01-12T06:49:31Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"pubrep_id":"697","_id":"1269","type":"journal_article","date_created":"2018-12-11T11:51:03Z","status":"public","file":[{"relation":"main_file","checksum":"0ffb7a15c5336b3a55248cc67021a825","file_id":"5349","creator":"system","access_level":"open_access","file_size":297282,"content_type":"application/pdf","date_created":"2018-12-12T10:18:28Z","date_updated":"2020-07-14T12:44:42Z","file_name":"IST-2016-697-v1+1_s11103-016-0501-8.pdf"}],"issue":"6","has_accepted_license":"1","month":"08","volume":91,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","author":[{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","full_name":"Benková, Eva","last_name":"Benková","first_name":"Eva","orcid":"0000-0002-8510-9739"}]},{"related_material":{"record":[{"status":"public","relation":"research_data","id":"9869"},{"relation":"research_data","id":"9870","status":"public"},{"relation":"research_data","id":"9871","status":"public"}]},"scopus_import":1,"publication":"PLoS One","intvolume":"        11","publist_id":"6050","oa":1,"doi":"10.1371/journal.pone.0163628","year":"2016","day":"27","acknowledgement":"The authors would like to thank Thomas Sokolowski and Filipe Tostevin for helpful discussions. PH and UG were funded by the German Excellence Initiative via the program \"Nanosystems Initiative Munich\" (https://www.nano-initiative-munich.de) and the German Research Foundation via the SFB 1032 \"Nanoagents for Spatiotemporal Control of Molecular and Cellular Reactions\" (http://www.sfb1032.physik.uni-muenchen.de). GT was funded by the Austrian Science Fund (FWF P 28844) (http://www.fwf.ac.at).","ddc":["571"],"abstract":[{"lang":"eng","text":"A crucial step in the early development of multicellular organisms involves the establishment of spatial patterns of gene expression which later direct proliferating cells to take on different cell fates. These patterns enable the cells to infer their global position within a tissue or an organism by reading out local gene expression levels. The patterning system is thus said to encode positional information, a concept that was formalized recently in the framework of information theory. Here we introduce a toy model of patterning in one spatial dimension, which can be seen as an extension of Wolpert's paradigmatic &quot;French Flag&quot; model, to patterning by several interacting, spatially coupled genes subject to intrinsic and extrinsic noise. Our model, a variant of an Ising spin system, allows us to systematically explore expression patterns that optimally encode positional information. We find that optimal patterning systems use positional cues, as in the French Flag model, together with gene-gene interactions to generate combinatorial codes for position which we call &quot;Counter&quot; patterns. Counter patterns can also be stabilized against noise and variations in system size or morphogen dosage by longer-range spatial interactions of the type invoked in the Turing model. The simple setup proposed here qualitatively captures many of the experimentally observed properties of biological patterning systems and allows them to be studied in a single, theoretically consistent framework."}],"publication_status":"published","title":"Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information","file_date_updated":"2020-07-14T12:44:42Z","publisher":"Public Library of Science","date_published":"2016-09-27T00:00:00Z","citation":{"short":"P. Hillenbrand, U. Gerland, G. Tkačik, PLoS One 11 (2016).","mla":"Hillenbrand, Patrick, et al. “Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.” <i>PLoS One</i>, vol. 11, no. 9, e0163628, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628\">10.1371/journal.pone.0163628</a>.","ista":"Hillenbrand P, Gerland U, Tkačik G. 2016. Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information. PLoS One. 11(9), e0163628.","chicago":"Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information.” <i>PLoS One</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0163628\">https://doi.org/10.1371/journal.pone.0163628</a>.","ama":"Hillenbrand P, Gerland U, Tkačik G. Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information. <i>PLoS One</i>. 2016;11(9). doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628\">10.1371/journal.pone.0163628</a>","apa":"Hillenbrand, P., Gerland, U., &#38; Tkačik, G. (2016). Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0163628\">https://doi.org/10.1371/journal.pone.0163628</a>","ieee":"P. Hillenbrand, U. Gerland, and G. Tkačik, “Beyond the French flag model: Exploiting spatial and gene regulatory interactions for positional information,” <i>PLoS One</i>, vol. 11, no. 9. Public Library of Science, 2016."},"date_updated":"2023-02-23T14:11:37Z","department":[{"_id":"GaTk"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"pubrep_id":"696","_id":"1270","type":"journal_article","date_created":"2018-12-11T11:51:03Z","status":"public","issue":"9","file":[{"file_name":"IST-2016-696-v1+1_journal.pone.0163628.PDF","content_type":"application/pdf","date_updated":"2020-07-14T12:44:42Z","date_created":"2018-12-12T10:10:47Z","creator":"system","file_id":"4837","checksum":"3d0d55d373096a033bd9cf79288c8586","file_size":4950415,"access_level":"open_access","relation":"main_file"}],"article_number":"e0163628","month":"09","has_accepted_license":"1","volume":11,"language":[{"iso":"eng"}],"oa_version":"Published Version","quality_controlled":"1","project":[{"_id":"254E9036-B435-11E9-9278-68D0E5697425","grant_number":"P28844-B27","name":"Biophysics of information processing in gene regulation","call_identifier":"FWF"}],"author":[{"first_name":"Patrick","last_name":"Hillenbrand","full_name":"Hillenbrand, Patrick"},{"first_name":"Ulrich","last_name":"Gerland","full_name":"Gerland, Ulrich"},{"orcid":"0000-0002-6699-1455","last_name":"Tkacik","first_name":"Gasper","full_name":"Tkacik, Gasper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"}]}]