[{"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-07-23T11:45:47Z","doi":"10.5061/dryad.s5s7r","citation":{"apa":"Barton, N. H. (2016). Data from: How does epistasis influence the response to selection? Dryad. <a href=\"https://doi.org/10.5061/dryad.s5s7r\">https://doi.org/10.5061/dryad.s5s7r</a>","chicago":"Barton, Nicholas H. “Data from: How Does Epistasis Influence the Response to Selection?” Dryad, 2016. <a href=\"https://doi.org/10.5061/dryad.s5s7r\">https://doi.org/10.5061/dryad.s5s7r</a>.","ama":"Barton NH. Data from: How does epistasis influence the response to selection? 2016. doi:<a href=\"https://doi.org/10.5061/dryad.s5s7r\">10.5061/dryad.s5s7r</a>","short":"N.H. Barton, (2016).","mla":"Barton, Nicholas H. <i>Data from: How Does Epistasis Influence the Response to Selection?</i> Dryad, 2016, doi:<a href=\"https://doi.org/10.5061/dryad.s5s7r\">10.5061/dryad.s5s7r</a>.","ista":"Barton NH. 2016. Data from: How does epistasis influence the response to selection?, Dryad, <a href=\"https://doi.org/10.5061/dryad.s5s7r\">10.5061/dryad.s5s7r</a>.","ieee":"N. H. Barton, “Data from: How does epistasis influence the response to selection?” Dryad, 2016."},"author":[{"last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","first_name":"Nicholas H","full_name":"Barton, Nicholas H"}],"status":"public","oa_version":"Published Version","date_published":"2016-09-23T00:00:00Z","publisher":"Dryad","day":"23","department":[{"_id":"NiBa"}],"abstract":[{"text":"Much of quantitative genetics is based on the ‘infinitesimal model’, under which selection has a negligible effect on the genetic variance. This is typically justified by assuming a very large number of loci with additive effects. However, it applies even when genes interact, provided that the number of loci is large enough that selection on each of them is weak relative to random drift. In the long term, directional selection will change allele frequencies, but even then, the effects of epistasis on the ultimate change in trait mean due to selection may be modest. Stabilising selection can maintain many traits close to their optima, even when the underlying alleles are weakly selected. However, the number of traits that can be optimised is apparently limited to ~4Ne by the ‘drift load’, and this is hard to reconcile with the apparent complexity of many organisms. Just as for the mutation load, this limit can be evaded by a particular form of negative epistasis. A more robust limit is set by the variance in reproductive success. This suggests that selection accumulates information most efficiently in the infinitesimal regime, when selection on individual alleles is weak, and comparable with random drift. A review of evidence on selection strength suggests that although most variance in fitness may be because of alleles with large Nes, substantial amounts of adaptation may be because of alleles in the infinitesimal regime, in which epistasis has modest effects.","lang":"eng"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"1199"}]},"type":"research_data_reference","_id":"9710","date_updated":"2025-05-28T11:57:03Z","title":"Data from: How does epistasis influence the response to selection?","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.s5s7r"}],"oa":1,"month":"09","year":"2016"},{"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-07-26T09:14:19Z","doi":"10.5061/dryad.4b565","status":"public","author":[{"first_name":"Dino","full_name":"Mcmahon, Dino","last_name":"Mcmahon"},{"last_name":"Fürst","id":"393B1196-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3712-925X","first_name":"Matthias","full_name":"Fürst, Matthias"},{"last_name":"Caspar","first_name":"Jesicca","full_name":"Caspar, Jesicca"},{"last_name":"Theodorou","full_name":"Theodorou, Panagiotis","first_name":"Panagiotis"},{"full_name":"Brown, Mark","first_name":"Mark","last_name":"Brown"},{"last_name":"Paxton","first_name":"Robert","full_name":"Paxton, Robert"}],"citation":{"ama":"Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees. 2016. doi:<a href=\"https://doi.org/10.5061/dryad.4b565\">10.5061/dryad.4b565</a>","chicago":"Mcmahon, Dino, Matthias Fürst, Jesicca Caspar, Panagiotis Theodorou, Mark Brown, and Robert Paxton. “Data from: A Sting in the Spit: Widespread Cross-Infection of Multiple RNA Viruses across Wild and Managed Bees.” Dryad, 2016. <a href=\"https://doi.org/10.5061/dryad.4b565\">https://doi.org/10.5061/dryad.4b565</a>.","apa":"Mcmahon, D., Fürst, M., Caspar, J., Theodorou, P., Brown, M., &#38; Paxton, R. (2016). Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees. Dryad. <a href=\"https://doi.org/10.5061/dryad.4b565\">https://doi.org/10.5061/dryad.4b565</a>","ista":"Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. 2016. Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees, Dryad, <a href=\"https://doi.org/10.5061/dryad.4b565\">10.5061/dryad.4b565</a>.","ieee":"D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, and R. Paxton, “Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees.” Dryad, 2016.","short":"D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).","mla":"Mcmahon, Dino, et al. <i>Data from: A Sting in the Spit: Widespread Cross-Infection of Multiple RNA Viruses across Wild and Managed Bees</i>. Dryad, 2016, doi:<a href=\"https://doi.org/10.5061/dryad.4b565\">10.5061/dryad.4b565</a>."},"oa_version":"Published Version","date_published":"2016-01-22T00:00:00Z","publisher":"Dryad","day":"22","department":[{"_id":"SyCr"}],"abstract":[{"lang":"eng","text":"Summary: Declining populations of bee pollinators are a cause of concern, with major repercussions for biodiversity loss and food security. RNA viruses associated with honeybees represent a potential threat to other insect pollinators, but the extent of this threat is poorly understood. This study aims to attain a detailed understanding of the current and ongoing risk of emerging infectious disease (EID) transmission between managed and wild pollinator species across a wide range of RNA viruses. Within a structured large-scale national survey across 26 independent sites, we quantify the prevalence and pathogen loads of multiple RNA viruses in co-occurring managed honeybee (Apis mellifera) and wild bumblebee (Bombus spp.) populations. We then construct models that compare virus prevalence between wild and managed pollinators. Multiple RNA viruses associated with honeybees are widespread in sympatric wild bumblebee populations. Virus prevalence in honeybees is a significant predictor of virus prevalence in bumblebees, but we remain cautious in speculating over the principle direction of pathogen transmission. We demonstrate species-specific differences in prevalence, indicating significant variation in disease susceptibility or tolerance. Pathogen loads within individual bumblebees may be high and in the case of at least one RNA virus, prevalence is higher in wild bumblebees than in managed honeybee populations. Our findings indicate widespread transmission of RNA viruses between managed and wild bee pollinators, pointing to an interconnected network of potential disease pressures within and among pollinator species. In the context of the biodiversity crisis, our study emphasizes the importance of targeting a wide range of pathogens and defining host associations when considering potential drivers of population decline."}],"related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"1855"}]},"date_updated":"2023-02-23T10:17:25Z","_id":"9720","type":"research_data_reference","article_processing_charge":"No","title":"Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.4b565"}],"oa":1,"month":"01","year":"2016"},{"title":"Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level","main_file_link":[{"url":"https://arxiv.org/abs/1512.06852","open_access":"1"}],"date_updated":"2021-01-12T08:22:25Z","type":"journal_article","_id":"983","month":"01","acknowledgement":"We thank B. I. Halperin, N. Cooper, C. Wang, J. Alicea, and M. Zaletel for insightful conversations. A. C. P. and M. S. were supported by the Gordon and Betty Moore Foundation’s EPiQS Initiative through Grant No. GBMF4307. A. V. was supported by a Simons Investigator grant.","year":"2016","intvolume":"         6","issue":"3","oa":1,"quality_controlled":0,"status":"public","author":[{"last_name":"Potter","full_name":"Potter, Andrew C","first_name":"Andrew"},{"last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","first_name":"Maksym","full_name":"Maksym Serbyn"},{"last_name":"Vishwanath","first_name":"Ashvin","full_name":"Vishwanath, Ashvin K"}],"citation":{"ama":"Potter A, Serbyn M, Vishwanath A. Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level. <i>Physical Review X</i>. 2016;6(3). doi:<a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">10.1103/PhysRevX.6.031026</a>","chicago":"Potter, Andrew, Maksym Serbyn, and Ashvin Vishwanath. “Thermoelectric Transport Signatures of Dirac Composite Fermions in the Half-Filled Landau Level.” <i>Physical Review X</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">https://doi.org/10.1103/PhysRevX.6.031026</a>.","apa":"Potter, A., Serbyn, M., &#38; Vishwanath, A. (2016). Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">https://doi.org/10.1103/PhysRevX.6.031026</a>","ieee":"A. Potter, M. Serbyn, and A. Vishwanath, “Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level,” <i>Physical Review X</i>, vol. 6, no. 3. American Physical Society, 2016.","ista":"Potter A, Serbyn M, Vishwanath A. 2016. Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level. Physical Review X. 6(3).","short":"A. Potter, M. Serbyn, A. Vishwanath, Physical Review X 6 (2016).","mla":"Potter, Andrew, et al. “Thermoelectric Transport Signatures of Dirac Composite Fermions in the Half-Filled Landau Level.” <i>Physical Review X</i>, vol. 6, no. 3, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevX.6.031026\">10.1103/PhysRevX.6.031026</a>."},"extern":1,"publication_status":"published","date_created":"2018-12-11T11:49:32Z","volume":6,"doi":"10.1103/PhysRevX.6.031026","publist_id":"6417","abstract":[{"text":"The half-filled Landau level is expected to be approximately particle-hole symmetric, which requires an extension of the Halperin-Lee-Read (HLR) theory of the compressible state observed at this filling. Recent work indicates that, when particle-hole symmetry is preserved, the composite fermions experience a quantized π-Berry phase upon winding around the composite Fermi surface, analogous to Dirac fermions at the surface of a 3D topological insulator. In contrast, the effective low-energy theory of the composite fermion liquid originally proposed by HLR lacks particle-hole symmetry and has vanishing Berry phase. In this paper, we explain how thermoelectric transport measurements can be used to test the Dirac nature of the composite fermions by quantitatively extracting this Berry phase. First, we point out that longitudinal thermopower (Seebeck effect) is nonvanishing because of the unusual nature of particle-hole symmetry in this context and is not sensitive to the Berry phase. In contrast, we find that off-diagonal thermopower (Nernst effect) is directly related to the topological structure of the composite Fermi surface, vanishing for zero Berry phase and taking its maximal value for π Berry phase. In contrast, in purely electrical transport signatures, the Berry phase contributions appear as small corrections to a large background signal, making the Nernst effect a promising diagnostic of the Dirac nature of composite fermions.","lang":"eng"}],"date_published":"2016-01-01T00:00:00Z","publication":"Physical Review X","publisher":"American Physical Society","day":"01"},{"publication":"Physical Review Letters","date_published":"2016-10-16T00:00:00Z","day":"16","publisher":"American Physical Society","publist_id":"6414","abstract":[{"lang":"eng","text":"The entanglement spectrum of the reduced density matrix contains information beyond the von Neumann entropy and provides unique insights into exotic orders or critical behavior of quantum systems. Here, we show that strongly disordered systems in the many-body localized phase have power-law entanglement spectra, arising from the presence of extensively many local integrals of motion. The power-law entanglement spectrum distinguishes many-body localized systems from ergodic systems, as well as from ground states of gapped integrable models or free systems in the vicinity of scale-invariant critical points. We confirm our results using large-scale exact diagonalization. In addition, we develop a matrix-product state algorithm which allows us to access the eigenstates of large systems close to the localization transition, and discuss general implications of our results for variational studies of highly excited eigenstates in many-body localized systems."}],"volume":117,"date_created":"2018-12-11T11:49:32Z","publication_status":"published","doi":"10.1103/PhysRevLett.117.160601","extern":1,"citation":{"chicago":"Serbyn, Maksym, Alexios Michailidis, Dmitry Abanin, and Zlatko Papić. “Power-Law Entanglement Spectrum in Many-Body Localized Phases.” <i>Physical Review Letters</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">https://doi.org/10.1103/PhysRevLett.117.160601</a>.","apa":"Serbyn, M., Michailidis, A., Abanin, D., &#38; Papić, Z. (2016). Power-law entanglement spectrum in many-body localized phases. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">https://doi.org/10.1103/PhysRevLett.117.160601</a>","ama":"Serbyn M, Michailidis A, Abanin D, Papić Z. Power-law entanglement spectrum in many-body localized phases. <i>Physical Review Letters</i>. 2016;117(16). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">10.1103/PhysRevLett.117.160601</a>","mla":"Serbyn, Maksym, et al. “Power-Law Entanglement Spectrum in Many-Body Localized Phases.” <i>Physical Review Letters</i>, vol. 117, no. 16, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.160601\">10.1103/PhysRevLett.117.160601</a>.","short":"M. Serbyn, A. Michailidis, D. Abanin, Z. Papić, Physical Review Letters 117 (2016).","ista":"Serbyn M, Michailidis A, Abanin D, Papić Z. 2016. Power-law entanglement spectrum in many-body localized phases. Physical Review Letters. 117(16).","ieee":"M. Serbyn, A. Michailidis, D. Abanin, and Z. Papić, “Power-law entanglement spectrum in many-body localized phases,” <i>Physical Review Letters</i>, vol. 117, no. 16. American Physical Society, 2016."},"quality_controlled":0,"author":[{"full_name":"Maksym Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn"},{"full_name":"Alexios Michailidis","first_name":"Alexios","id":"36EBAD38-F248-11E8-B48F-1D18A9856A87","last_name":"Michailidis"},{"first_name":"Dmitry","full_name":"Abanin, Dmitry A","last_name":"Abanin"},{"full_name":"Papić, Zlatko","first_name":"Zlatko","last_name":"Papić"}],"status":"public","issue":"16","oa":1,"month":"10","intvolume":"       117","acknowledgement":"We thank M. Stoudenmire and C. Turner for useful discussions. M. S. was supported by Gordon and Betty Moore Foundation's EPiQS Initiative through Grant No. GBMF4307. This research was supported in part by the National Science Foundation under Grant No. NSF PHY11-25915, and by the Swiss National Science Foundation and Alfred Sloan Foundation (D. A.). This work made use of the facilities of N8 HPC Centre of Excellence, provided and funded by the N8 consortium and EPSRC (Grant No. EP/K000225/1). The Centre is coordinated by the Universities of Leeds and Manchester.","year":"2016","_id":"984","type":"journal_article","date_updated":"2021-01-12T08:22:25Z","title":"Power-law entanglement spectrum in many-body localized phases","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1605.05737"}]},{"issue":"6","oa":1,"month":"04","acknowledgement":"This work has been primarily supported by the National Science Foundation (DMR-1405221) for device fabrication and transport, and partly by ONR Young Investigator Award N00014-13-1-0610 for data analysis.","intvolume":"       117","year":"2016","date_updated":"2021-01-12T08:22:26Z","type":"journal_article","_id":"985","title":"Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1607.00784"}],"date_published":"2016-04-01T00:00:00Z","publication":"Physical Review Letters","publisher":"American Physical Society","day":"01","publist_id":"6415","abstract":[{"text":"We report on magnetotransport studies of dual-gated, Bernal-stacked trilayer graphene (TLG) encapsulated in boron nitride crystals. We observe a quantum Hall effect staircase which indicates a complete lifting of the 12-fold degeneracy of the zeroth Landau level. As a function of perpendicular electric field, our data exhibit a sequence of phase transitions between all integer quantum Hall states in the filling factor interval -8&lt;ν&lt;0. We develop a theoretical model and argue that, in contrast to monolayer and bilayer graphene, the observed Landau level splittings and quantum Hall phase transitions can be understood within a single-particle picture, but imply the presence of a charge density imbalance between the inner and outer layers of TLG, even at charge neutrality and zero transverse electric field. Our results indicate the importance of a previously unaccounted band structure parameter which, together with a more accurate estimate of the other tight-binding parameters, results in a significantly improved determination of the electronic and Landau level structure of TLG.","lang":"eng"}],"date_created":"2018-12-11T11:49:33Z","publication_status":"published","volume":117,"doi":"10.1103/PhysRevLett.117.066601","quality_controlled":0,"author":[{"last_name":"Campos","first_name":"Leonardo","full_name":"Campos, Leonardo C"},{"first_name":"Thiti","full_name":"Taychatanapat, Thiti","last_name":"Taychatanapat"},{"last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","full_name":"Maksym Serbyn","first_name":"Maksym"},{"full_name":"Surakitbovorn, Kawin N","first_name":"Kawin","last_name":"Surakitbovorn"},{"last_name":"Watanabe","first_name":"Kenji","full_name":"Watanabe, Kenji"},{"full_name":"Taniguchi, Takashi","first_name":"Takashi","last_name":"Taniguchi"},{"last_name":"Abanin","full_name":"Abanin, Dmitry A","first_name":"Dmitry"},{"last_name":"Jarillo Herrero","full_name":"Jarillo-Herrero, Pablo","first_name":"Pablo"}],"status":"public","extern":1,"citation":{"ieee":"L. Campos <i>et al.</i>, “Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene,” <i>Physical Review Letters</i>, vol. 117, no. 6. American Physical Society, 2016.","ista":"Campos L, Taychatanapat T, Serbyn M, Surakitbovorn K, Watanabe K, Taniguchi T, Abanin D, Jarillo Herrero P. 2016. Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene. Physical Review Letters. 117(6).","short":"L. Campos, T. Taychatanapat, M. Serbyn, K. Surakitbovorn, K. Watanabe, T. Taniguchi, D. Abanin, P. Jarillo Herrero, Physical Review Letters 117 (2016).","mla":"Campos, Leonardo, et al. “Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene.” <i>Physical Review Letters</i>, vol. 117, no. 6, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">10.1103/PhysRevLett.117.066601</a>.","ama":"Campos L, Taychatanapat T, Serbyn M, et al. Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene. <i>Physical Review Letters</i>. 2016;117(6). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">10.1103/PhysRevLett.117.066601</a>","apa":"Campos, L., Taychatanapat, T., Serbyn, M., Surakitbovorn, K., Watanabe, K., Taniguchi, T., … Jarillo Herrero, P. (2016). Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">https://doi.org/10.1103/PhysRevLett.117.066601</a>","chicago":"Campos, Leonardo, Thiti Taychatanapat, Maksym Serbyn, Kawin Surakitbovorn, Kenji Watanabe, Takashi Taniguchi, Dmitry Abanin, and Pablo Jarillo Herrero. “Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene.” <i>Physical Review Letters</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevLett.117.066601\">https://doi.org/10.1103/PhysRevLett.117.066601</a>."}},{"doi":"10.1103/PhysRevB.93.041424","volume":93,"publication_status":"published","date_created":"2018-12-11T11:49:33Z","citation":{"short":"M. Serbyn, J. Moore, Physical Review B - Condensed Matter and Materials Physics 93 (2016).","mla":"Serbyn, Maksym, and Joel Moore. “Spectral Statistics across the Many-Body Localization Transition.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 93, no. 4, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">10.1103/PhysRevB.93.041424</a>.","ieee":"M. Serbyn and J. Moore, “Spectral statistics across the many-body localization transition,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 93, no. 4. American Physical Society, 2016.","ista":"Serbyn M, Moore J. 2016. Spectral statistics across the many-body localization transition. Physical Review B - Condensed Matter and Materials Physics. 93(4).","apa":"Serbyn, M., &#38; Moore, J. (2016). Spectral statistics across the many-body localization transition. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">https://doi.org/10.1103/PhysRevB.93.041424</a>","chicago":"Serbyn, Maksym, and Joel Moore. “Spectral Statistics across the Many-Body Localization Transition.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">https://doi.org/10.1103/PhysRevB.93.041424</a>.","ama":"Serbyn M, Moore J. Spectral statistics across the many-body localization transition. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2016;93(4). doi:<a href=\"https://doi.org/10.1103/PhysRevB.93.041424\">10.1103/PhysRevB.93.041424</a>"},"extern":1,"status":"public","author":[{"last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2399-5827","first_name":"Maksym","full_name":"Maksym Serbyn"},{"full_name":"Moore, Joel E","first_name":"Joel","last_name":"Moore"}],"quality_controlled":0,"day":"29","publisher":"American Physical Society","publication":"Physical Review B - Condensed Matter and Materials Physics","date_published":"2016-01-29T00:00:00Z","abstract":[{"text":"The many-body localization transition (MBLT) between ergodic and many-body localized phases in disordered interacting systems is a subject of much recent interest. The statistics of eigenenergies is known to be a powerful probe of crossovers between ergodic and integrable systems in simpler examples of quantum chaos. We consider the evolution of the spectral statistics across the MBLT, starting with mapping to a Brownian motion process that analytically relates the spectral properties to the statistics of matrix elements. We demonstrate that the flow from Wigner-Dyson to Poisson statistics is a two-stage process. First, a fractal enhancement of matrix elements upon approaching the MBLT from the delocalized side produces an effective power-law interaction between energy levels, and leads to a plasma model for level statistics. At the second stage, the gas of eigenvalues has local interactions and the level statistics belongs to a semi-Poisson universality class. We verify our findings numerically on the XXZ spin chain. We provide a microscopic understanding of the level statistics across the MBLT and discuss implications for the transition that are strong constraints on possible theories.","lang":"eng"}],"publist_id":"6416","type":"journal_article","_id":"986","date_updated":"2021-01-12T08:22:26Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1508.07293"}],"title":"Spectral statistics across the many-body localization transition","oa":1,"issue":"4","year":"2016","intvolume":"        93","month":"01"},{"publisher":"Public Library of Science","day":"27","department":[{"_id":"BeVi"},{"_id":"NiBa"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-08-10T08:20:17Z","doi":"10.1371/journal.pbio.2000234.s016","status":"public","author":[{"last_name":"Roux","full_name":"Roux, Camille","first_name":"Camille"},{"last_name":"Fraisse","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8441-5075","first_name":"Christelle","full_name":"Fraisse, Christelle"},{"full_name":"Romiguier, Jonathan","first_name":"Jonathan","last_name":"Romiguier"},{"last_name":"Anciaux","first_name":"Youann","full_name":"Anciaux, Youann"},{"first_name":"Nicolas","full_name":"Galtier, Nicolas","last_name":"Galtier"},{"full_name":"Bierne, Nicolas","first_name":"Nicolas","last_name":"Bierne"}],"citation":{"ama":"Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Simulation study to test the robustness of ABC in face of recent times of divergence. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pbio.2000234.s016\">10.1371/journal.pbio.2000234.s016</a>","apa":"Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &#38; Bierne, N. (2016). Simulation study to test the robustness of ABC in face of recent times of divergence. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2000234.s016\">https://doi.org/10.1371/journal.pbio.2000234.s016</a>","chicago":"Roux, Camille, Christelle Fraisse, Jonathan Romiguier, Youann Anciaux, Nicolas Galtier, and Nicolas Bierne. “Simulation Study to Test the Robustness of ABC in Face of Recent Times of Divergence.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pbio.2000234.s016\">https://doi.org/10.1371/journal.pbio.2000234.s016</a>.","ista":"Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. 2016. Simulation study to test the robustness of ABC in face of recent times of divergence, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pbio.2000234.s016\">10.1371/journal.pbio.2000234.s016</a>.","ieee":"C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, and N. Bierne, “Simulation study to test the robustness of ABC in face of recent times of divergence.” Public Library of Science, 2016.","mla":"Roux, Camille, et al. <i>Simulation Study to Test the Robustness of ABC in Face of Recent Times of Divergence</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2000234.s016\">10.1371/journal.pbio.2000234.s016</a>.","short":"C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016)."},"oa_version":"Published Version","month":"12","year":"2016","related_material":{"record":[{"status":"public","id":"1158","relation":"used_in_publication"}]},"date_updated":"2023-02-21T16:21:20Z","type":"research_data_reference","_id":"9862","article_processing_charge":"No","title":"Simulation study to test the robustness of ABC in face of recent times of divergence"},{"month":"12","year":"2016","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"1158"}]},"date_updated":"2023-02-21T16:21:20Z","type":"research_data_reference","_id":"9863","title":"Accessions of surveyed individuals, geographic locations and summary statistics","article_processing_charge":"No","publisher":"Public Library of Science","day":"27","department":[{"_id":"BeVi"},{"_id":"NiBa"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-08-10T08:22:52Z","doi":"10.1371/journal.pbio.2000234.s017","author":[{"first_name":"Camille","full_name":"Roux, Camille","last_name":"Roux"},{"first_name":"Christelle","full_name":"Fraisse, Christelle","orcid":"0000-0001-8441-5075","id":"32DF5794-F248-11E8-B48F-1D18A9856A87","last_name":"Fraisse"},{"last_name":"Romiguier","first_name":"Jonathan","full_name":"Romiguier, Jonathan"},{"first_name":"Youann","full_name":"Anciaux, Youann","last_name":"Anciaux"},{"full_name":"Galtier, Nicolas","first_name":"Nicolas","last_name":"Galtier"},{"last_name":"Bierne","first_name":"Nicolas","full_name":"Bierne, Nicolas"}],"status":"public","citation":{"ama":"Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. Accessions of surveyed individuals, geographic locations and summary statistics. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pbio.2000234.s017\">10.1371/journal.pbio.2000234.s017</a>","chicago":"Roux, Camille, Christelle Fraisse, Jonathan Romiguier, Youann Anciaux, Nicolas Galtier, and Nicolas Bierne. “Accessions of Surveyed Individuals, Geographic Locations and Summary Statistics.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pbio.2000234.s017\">https://doi.org/10.1371/journal.pbio.2000234.s017</a>.","apa":"Roux, C., Fraisse, C., Romiguier, J., Anciaux, Y., Galtier, N., &#38; Bierne, N. (2016). Accessions of surveyed individuals, geographic locations and summary statistics. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2000234.s017\">https://doi.org/10.1371/journal.pbio.2000234.s017</a>","ieee":"C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, and N. Bierne, “Accessions of surveyed individuals, geographic locations and summary statistics.” Public Library of Science, 2016.","ista":"Roux C, Fraisse C, Romiguier J, Anciaux Y, Galtier N, Bierne N. 2016. Accessions of surveyed individuals, geographic locations and summary statistics, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pbio.2000234.s017\">10.1371/journal.pbio.2000234.s017</a>.","short":"C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).","mla":"Roux, Camille, et al. <i>Accessions of Surveyed Individuals, Geographic Locations and Summary Statistics</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2000234.s017\">10.1371/journal.pbio.2000234.s017</a>."},"oa_version":"Published Version"},{"article_processing_charge":"No","title":"Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.4315652.v1"}],"related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"1077"}]},"type":"research_data_reference","_id":"9864","date_updated":"2025-05-28T11:57:06Z","month":"12","year":"2016","oa":1,"citation":{"ama":"Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. 2016. doi:<a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">10.6084/m9.figshare.4315652.v1</a>","apa":"Fernandes Redondo, R. A., de Vladar, H., Włodarski, T., &#38; Bollback, J. P. (2016). Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. The Royal Society. <a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">https://doi.org/10.6084/m9.figshare.4315652.v1</a>","chicago":"Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Data from Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” The Royal Society, 2016. <a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">https://doi.org/10.6084/m9.figshare.4315652.v1</a>.","ista":"Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. 2016. Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family, The Royal Society, <a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">10.6084/m9.figshare.4315652.v1</a>.","ieee":"R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family.” The Royal Society, 2016.","mla":"Fernandes Redondo, Rodrigo A., et al. <i>Data from Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family</i>. The Royal Society, 2016, doi:<a href=\"https://doi.org/10.6084/m9.figshare.4315652.v1\">10.6084/m9.figshare.4315652.v1</a>.","short":"R.A. Fernandes Redondo, H. de Vladar, T. Włodarski, J.P. Bollback, (2016)."},"author":[{"orcid":"0000-0002-5837-2793","full_name":"Fernandes Redondo, Rodrigo A","first_name":"Rodrigo A","last_name":"Fernandes Redondo","id":"409D5C96-F248-11E8-B48F-1D18A9856A87"},{"last_name":"de Vladar","id":"2A181218-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5985-7653","first_name":"Harold","full_name":"de Vladar, Harold"},{"full_name":"Włodarski, Tomasz","first_name":"Tomasz","last_name":"Włodarski"},{"full_name":"Bollback, Jonathan P","first_name":"Jonathan P","orcid":"0000-0002-4624-4612","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","last_name":"Bollback"}],"status":"public","oa_version":"Published Version","date_created":"2021-08-10T08:29:47Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","doi":"10.6084/m9.figshare.4315652.v1","department":[{"_id":"NiBa"},{"_id":"JoBo"}],"abstract":[{"lang":"eng","text":"Viral capsids are structurally constrained by interactions among the amino acids (AAs) of their constituent proteins. Therefore, epistasis is expected to evolve among physically interacting sites and to influence the rates of substitution. To study the evolution of epistasis, we focused on the major structural protein of the ϕX174 phage family by, first, reconstructing the ancestral protein sequences of 18 species using a Bayesian statistical framework. The inferred ancestral reconstruction differed at eight AAs, for a total of 256 possible ancestral haplotypes. For each ancestral haplotype and the extant species, we estimated, in silico, the distribution of free energies and epistasis of the capsid structure. We found that free energy has not significantly increased but epistasis has. We decomposed epistasis up to fifth order and found that higher-order epistasis sometimes compensates pairwise interactions making the free energy seem additive. The dN/dS ratio is low, suggesting strong purifying selection, and that structure is under stabilizing selection. We synthesized phages carrying ancestral haplotypes of the coat protein gene and measured their fitness experimentally. Our findings indicate that stabilizing mutations can have higher fitness, and that fitness optima do not necessarily coincide with energy minima."}],"date_published":"2016-12-14T00:00:00Z","day":"14","publisher":"The Royal Society"},{"publisher":"Public Library of Science","day":"09","date_published":"2016-12-09T00:00:00Z","department":[{"_id":"AnKi"}],"doi":"10.1371/journal.pcbi.1005218.s009","date_created":"2021-08-10T08:37:20Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa_version":"Published Version","status":"public","author":[{"id":"343DA0DC-F248-11E8-B48F-1D18A9856A87","last_name":"Zagórski","first_name":"Marcin P","full_name":"Zagórski, Marcin P","orcid":"0000-0001-7896-7762"},{"last_name":"Burda","full_name":"Burda, Zdzisław","first_name":"Zdzisław"},{"full_name":"Wacław, Bartłomiej","first_name":"Bartłomiej","last_name":"Wacław"}],"citation":{"ieee":"M. P. Zagórski, Z. Burda, and B. Wacław, “ZIP-archived directory containing all data and computer programs.” Public Library of Science, 2016.","ista":"Zagórski MP, Burda Z, Wacław B. 2016. ZIP-archived directory containing all data and computer programs, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pcbi.1005218.s009\">10.1371/journal.pcbi.1005218.s009</a>.","short":"M.P. Zagórski, Z. Burda, B. Wacław, (2016).","mla":"Zagórski, Marcin P., et al. <i>ZIP-Archived Directory Containing All Data and Computer Programs</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1005218.s009\">10.1371/journal.pcbi.1005218.s009</a>.","ama":"Zagórski MP, Burda Z, Wacław B. ZIP-archived directory containing all data and computer programs. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1005218.s009\">10.1371/journal.pcbi.1005218.s009</a>","chicago":"Zagórski, Marcin P, Zdzisław Burda, and Bartłomiej Wacław. “ZIP-Archived Directory Containing All Data and Computer Programs.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pcbi.1005218.s009\">https://doi.org/10.1371/journal.pcbi.1005218.s009</a>.","apa":"Zagórski, M. P., Burda, Z., &#38; Wacław, B. (2016). ZIP-archived directory containing all data and computer programs. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1005218.s009\">https://doi.org/10.1371/journal.pcbi.1005218.s009</a>"},"year":"2016","month":"12","date_updated":"2023-02-21T16:24:29Z","type":"research_data_reference","_id":"9866","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"1167"}]},"title":"ZIP-archived directory containing all data and computer programs","article_processing_charge":"No"},{"date_created":"2021-08-10T08:42:00Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","doi":"10.1371/journal.pone.0163867.s008","author":[{"last_name":"Hilbe","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5116-955X","first_name":"Christian","full_name":"Hilbe, Christian"},{"first_name":"Kristin","full_name":"Hagel, Kristin","last_name":"Hagel"},{"last_name":"Milinski","full_name":"Milinski, Manfred","first_name":"Manfred"}],"status":"public","citation":{"ama":"Hilbe C, Hagel K, Milinski M. Experimental game instructions. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pone.0163867.s008\">10.1371/journal.pone.0163867.s008</a>","apa":"Hilbe, C., Hagel, K., &#38; Milinski, M. (2016). Experimental game instructions. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0163867.s008\">https://doi.org/10.1371/journal.pone.0163867.s008</a>","chicago":"Hilbe, Christian, Kristin Hagel, and Manfred Milinski. “Experimental Game Instructions.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0163867.s008\">https://doi.org/10.1371/journal.pone.0163867.s008</a>.","ista":"Hilbe C, Hagel K, Milinski M. 2016. Experimental game instructions, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pone.0163867.s008\">10.1371/journal.pone.0163867.s008</a>.","ieee":"C. Hilbe, K. Hagel, and M. Milinski, “Experimental game instructions.” Public Library of Science, 2016.","mla":"Hilbe, Christian, et al. <i>Experimental Game Instructions</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0163867.s008\">10.1371/journal.pone.0163867.s008</a>.","short":"C. Hilbe, K. Hagel, M. Milinski, (2016)."},"oa_version":"Published Version","day":"04","publisher":"Public Library of Science","department":[{"_id":"KrCh"}],"abstract":[{"lang":"eng","text":"In the beginning of our experiment, subjects were asked to read a few pages on their computer screens that would explain the rules of the subsequent game. Here, we provide these instructions, translated from German."}],"related_material":{"record":[{"id":"1322","status":"public","relation":"used_in_publication"}]},"date_updated":"2023-02-21T16:59:01Z","type":"research_data_reference","_id":"9867","article_processing_charge":"No","title":"Experimental game instructions","month":"10","year":"2016"},{"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-08-10T08:45:00Z","doi":"10.1371/journal.pone.0163867.s009","status":"public","author":[{"full_name":"Hilbe, Christian","first_name":"Christian","orcid":"0000-0001-5116-955X","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","last_name":"Hilbe"},{"last_name":"Hagel","full_name":"Hagel, Kristin","first_name":"Kristin"},{"full_name":"Milinski, Manfred","first_name":"Manfred","last_name":"Milinski"}],"citation":{"ama":"Hilbe C, Hagel K, Milinski M. Experimental data. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pone.0163867.s009\">10.1371/journal.pone.0163867.s009</a>","apa":"Hilbe, C., Hagel, K., &#38; Milinski, M. (2016). Experimental data. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0163867.s009\">https://doi.org/10.1371/journal.pone.0163867.s009</a>","chicago":"Hilbe, Christian, Kristin Hagel, and Manfred Milinski. “Experimental Data.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0163867.s009\">https://doi.org/10.1371/journal.pone.0163867.s009</a>.","ista":"Hilbe C, Hagel K, Milinski M. 2016. Experimental data, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pone.0163867.s009\">10.1371/journal.pone.0163867.s009</a>.","ieee":"C. Hilbe, K. Hagel, and M. Milinski, “Experimental data.” Public Library of Science, 2016.","mla":"Hilbe, Christian, et al. <i>Experimental Data</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0163867.s009\">10.1371/journal.pone.0163867.s009</a>.","short":"C. Hilbe, K. Hagel, M. Milinski, (2016)."},"oa_version":"Published Version","date_published":"2016-10-04T00:00:00Z","publisher":"Public Library of Science","day":"04","department":[{"_id":"KrCh"}],"abstract":[{"text":"The raw data file containing the experimental decisions of all our study subjects.","lang":"eng"}],"related_material":{"record":[{"relation":"used_in_publication","id":"1322","status":"public"}]},"date_updated":"2023-02-21T16:59:01Z","_id":"9868","type":"research_data_reference","article_processing_charge":"No","title":"Experimental data","month":"10","year":"2016"},{"doi":"10.1371/journal.pone.0163628.s001","date_created":"2021-08-10T08:53:48Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa_version":"Published Version","citation":{"ista":"Hillenbrand P, Gerland U, Tkačik G. 2016. Error bound on an estimator of position, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pone.0163628.s001\">10.1371/journal.pone.0163628.s001</a>.","ieee":"P. Hillenbrand, U. Gerland, and G. Tkačik, “Error bound on an estimator of position.” Public Library of Science, 2016.","short":"P. Hillenbrand, U. Gerland, G. Tkačik, (2016).","mla":"Hillenbrand, Patrick, et al. <i>Error Bound on an Estimator of Position</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628.s001\">10.1371/journal.pone.0163628.s001</a>.","ama":"Hillenbrand P, Gerland U, Tkačik G. Error bound on an estimator of position. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628.s001\">10.1371/journal.pone.0163628.s001</a>","apa":"Hillenbrand, P., Gerland, U., &#38; Tkačik, G. (2016). Error bound on an estimator of position. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0163628.s001\">https://doi.org/10.1371/journal.pone.0163628.s001</a>","chicago":"Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Error Bound on an Estimator of Position.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0163628.s001\">https://doi.org/10.1371/journal.pone.0163628.s001</a>."},"author":[{"full_name":"Hillenbrand, Patrick","first_name":"Patrick","last_name":"Hillenbrand"},{"full_name":"Gerland, Ulrich","first_name":"Ulrich","last_name":"Gerland"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik","first_name":"Gašper","full_name":"Tkačik, Gašper","orcid":"0000-0002-6699-1455"}],"status":"public","day":"27","publisher":"Public Library of Science","date_published":"2016-09-27T00:00:00Z","abstract":[{"lang":"eng","text":"A lower bound on the error of a positional estimator with limited positional information is derived."}],"department":[{"_id":"GaTk"}],"_id":"9869","type":"research_data_reference","date_updated":"2023-02-21T16:56:40Z","related_material":{"record":[{"relation":"used_in_publication","id":"1270","status":"public"}]},"article_processing_charge":"No","title":"Error bound on an estimator of position","year":"2016","month":"09"},{"issue":"15","oa":1,"month":"10","year":"2016","intvolume":"        94","acknowledgement":"We thank S. Gazit for numerous discussions. This research was supported by the Gordon and Betty Moore Foundation EPiQS Initiative through Grant No. GBMF4307 (M.S.), the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences under Grant No. DE-SC0014671 (R.T.S.), and a Simons Investigator grant (A.V.).","type":"journal_article","_id":"987","date_updated":"2021-01-12T08:22:27Z","title":"Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1512.08523"}],"publication":"Physical Review B - Condensed Matter and Materials Physics","date_published":"2016-10-17T00:00:00Z","day":"17","publisher":"American Physical Society","publist_id":"6413","abstract":[{"text":"In contrast to bulk FeSe, which exhibits nematic order and low temperature superconductivity, highly doped FeSe reverses the situation, having high temperature superconductivity appearing alongside a suppression of nematic order. To investigate this phenomenon, we study a minimal electronic model of FeSe, with interactions that enhance nematic fluctuations. This model is sign problem free, and is simulated using determinant quantum Monte Carlo (DQMC). We developed a DQMC algorithm with parallel tempering, which proves to be an efficient source of global updates and allows us to access the region of strong interactions. Over a wide range of intermediate couplings, we observe superconductivity with an extended s-wave order parameter, along with enhanced, but short-ranged, q=(0,0) ferro-orbital (nematic) order. These results are consistent with approximate weak-coupling treatments that predict that nematic fluctuations lead to superconducting pairing. Surprisingly, in the parameter range under study, we do not observe nematic long-range order. Instead, at stronger coupling an unusual insulating phase with q=(π,π) antiferro-orbital order appears, which is missed by weak-coupling approximations.","lang":"eng"}],"volume":94,"publication_status":"published","date_created":"2018-12-11T11:49:33Z","doi":"10.1103/PhysRevB.94.155127","extern":1,"citation":{"ieee":"P. Dumitrescu, M. Serbyn, R. Scalettar, and A. Vishwanath, “Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 94, no. 15. American Physical Society, 2016.","ista":"Dumitrescu P, Serbyn M, Scalettar R, Vishwanath A. 2016. Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study. Physical Review B - Condensed Matter and Materials Physics. 94(15).","short":"P. Dumitrescu, M. Serbyn, R. Scalettar, A. Vishwanath, Physical Review B - Condensed Matter and Materials Physics 94 (2016).","mla":"Dumitrescu, Philipp, et al. “Superconductivity and Nematic Fluctuations in a Model of Doped FeSe Monolayers: Determinant Quantum Monte Carlo Study.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 94, no. 15, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">10.1103/PhysRevB.94.155127</a>.","ama":"Dumitrescu P, Serbyn M, Scalettar R, Vishwanath A. Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2016;94(15). doi:<a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">10.1103/PhysRevB.94.155127</a>","chicago":"Dumitrescu, Philipp, Maksym Serbyn, Richard Scalettar, and Ashvin Vishwanath. “Superconductivity and Nematic Fluctuations in a Model of Doped FeSe Monolayers: Determinant Quantum Monte Carlo Study.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">https://doi.org/10.1103/PhysRevB.94.155127</a>.","apa":"Dumitrescu, P., Serbyn, M., Scalettar, R., &#38; Vishwanath, A. (2016). Superconductivity and nematic fluctuations in a model of doped FeSe monolayers: Determinant quantum Monte Carlo study. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.94.155127\">https://doi.org/10.1103/PhysRevB.94.155127</a>"},"author":[{"last_name":"Dumitrescu","full_name":"Dumitrescu, Philipp T","first_name":"Philipp"},{"full_name":"Maksym Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","last_name":"Serbyn"},{"full_name":"Scalettar, Richard T","first_name":"Richard","last_name":"Scalettar"},{"last_name":"Vishwanath","full_name":"Vishwanath, Ashvin K","first_name":"Ashvin"}],"quality_controlled":0,"status":"public"},{"month":"09","year":"2016","article_processing_charge":"No","title":"Computation of positional information in an Ising model","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"1270"}]},"type":"research_data_reference","_id":"9870","date_updated":"2023-02-21T16:56:40Z","department":[{"_id":"GaTk"}],"abstract":[{"text":"The effect of noise in the input field on an Ising model is approximated. Furthermore, methods to compute positional information in an Ising model by transfer matrices and Monte Carlo sampling are outlined.","lang":"eng"}],"date_published":"2016-09-27T00:00:00Z","publisher":"Public Library of Science","day":"27","citation":{"ista":"Hillenbrand P, Gerland U, Tkačik G. 2016. Computation of positional information in an Ising model, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pone.0163628.s002\">10.1371/journal.pone.0163628.s002</a>.","ieee":"P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information in an Ising model.” Public Library of Science, 2016.","short":"P. Hillenbrand, U. Gerland, G. Tkačik, (2016).","mla":"Hillenbrand, Patrick, et al. <i>Computation of Positional Information in an Ising Model</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628.s002\">10.1371/journal.pone.0163628.s002</a>.","ama":"Hillenbrand P, Gerland U, Tkačik G. Computation of positional information in an Ising model. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628.s002\">10.1371/journal.pone.0163628.s002</a>","chicago":"Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Computation of Positional Information in an Ising Model.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0163628.s002\">https://doi.org/10.1371/journal.pone.0163628.s002</a>.","apa":"Hillenbrand, P., Gerland, U., &#38; Tkačik, G. (2016). Computation of positional information in an Ising model. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0163628.s002\">https://doi.org/10.1371/journal.pone.0163628.s002</a>"},"status":"public","author":[{"last_name":"Hillenbrand","first_name":"Patrick","full_name":"Hillenbrand, Patrick"},{"full_name":"Gerland, Ulrich","first_name":"Ulrich","last_name":"Gerland"},{"first_name":"Gašper","full_name":"Tkačik, Gašper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik"}],"oa_version":"Published Version","date_created":"2021-08-10T09:23:45Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","doi":"10.1371/journal.pone.0163628.s002"},{"year":"2016","month":"09","title":"Computation of positional information in a discrete morphogen field","article_processing_charge":"No","date_updated":"2023-02-21T16:56:40Z","type":"research_data_reference","_id":"9871","related_material":{"record":[{"id":"1270","status":"public","relation":"used_in_publication"}]},"abstract":[{"lang":"eng","text":"The positional information in a discrete morphogen field with Gaussian noise is computed."}],"department":[{"_id":"GaTk"}],"day":"27","publisher":"Public Library of Science","oa_version":"Published Version","author":[{"last_name":"Hillenbrand","full_name":"Hillenbrand, Patrick","first_name":"Patrick"},{"full_name":"Gerland, Ulrich","first_name":"Ulrich","last_name":"Gerland"},{"full_name":"Tkačik, Gašper","first_name":"Gašper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik"}],"status":"public","citation":{"ista":"Hillenbrand P, Gerland U, Tkačik G. 2016. Computation of positional information in a discrete morphogen field, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pone.0163628.s003\">10.1371/journal.pone.0163628.s003</a>.","ieee":"P. Hillenbrand, U. Gerland, and G. Tkačik, “Computation of positional information in a discrete morphogen field.” Public Library of Science, 2016.","mla":"Hillenbrand, Patrick, et al. <i>Computation of Positional Information in a Discrete Morphogen Field</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628.s003\">10.1371/journal.pone.0163628.s003</a>.","short":"P. Hillenbrand, U. Gerland, G. Tkačik, (2016).","ama":"Hillenbrand P, Gerland U, Tkačik G. Computation of positional information in a discrete morphogen field. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pone.0163628.s003\">10.1371/journal.pone.0163628.s003</a>","apa":"Hillenbrand, P., Gerland, U., &#38; Tkačik, G. (2016). Computation of positional information in a discrete morphogen field. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0163628.s003\">https://doi.org/10.1371/journal.pone.0163628.s003</a>","chicago":"Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Computation of Positional Information in a Discrete Morphogen Field.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pone.0163628.s003\">https://doi.org/10.1371/journal.pone.0163628.s003</a>."},"doi":"10.1371/journal.pone.0163628.s003","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-08-10T09:27:35Z"},{"year":"2016","month":"04","date_updated":"2023-02-21T16:50:13Z","type":"research_data_reference","_id":"9873","related_material":{"record":[{"id":"1250","status":"public","relation":"used_in_publication"}]},"title":"Quantification of the growth rate reduction as a consequence of age-specific mortality","article_processing_charge":"No","publisher":"Public Library of Science","day":"19","department":[{"_id":"CaGu"}],"doi":"10.1371/journal.pgen.1005974.s015","date_created":"2021-08-10T09:42:34Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa_version":"Published Version","author":[{"last_name":"Boehm","first_name":"Alex","full_name":"Boehm, Alex"},{"first_name":"Markus","full_name":"Arnoldini, Markus","last_name":"Arnoldini"},{"id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","last_name":"Bergmiller","full_name":"Bergmiller, Tobias","first_name":"Tobias","orcid":"0000-0001-5396-4346"},{"first_name":"Thomas","full_name":"Röösli, Thomas","last_name":"Röösli"},{"last_name":"Bigosch","first_name":"Colette","full_name":"Bigosch, Colette"},{"last_name":"Ackermann","full_name":"Ackermann, Martin","first_name":"Martin"}],"status":"public","citation":{"ieee":"A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, and M. Ackermann, “Quantification of the growth rate reduction as a consequence of age-specific mortality.” Public Library of Science, 2016.","ista":"Boehm A, Arnoldini M, Bergmiller T, Röösli T, Bigosch C, Ackermann M. 2016. Quantification of the growth rate reduction as a consequence of age-specific mortality, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1005974.s015\">10.1371/journal.pgen.1005974.s015</a>.","mla":"Boehm, Alex, et al. <i>Quantification of the Growth Rate Reduction as a Consequence of Age-Specific Mortality</i>. Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1005974.s015\">10.1371/journal.pgen.1005974.s015</a>.","short":"A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, (2016).","ama":"Boehm A, Arnoldini M, Bergmiller T, Röösli T, Bigosch C, Ackermann M. Quantification of the growth rate reduction as a consequence of age-specific mortality. 2016. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1005974.s015\">10.1371/journal.pgen.1005974.s015</a>","chicago":"Boehm, Alex, Markus Arnoldini, Tobias Bergmiller, Thomas Röösli, Colette Bigosch, and Martin Ackermann. “Quantification of the Growth Rate Reduction as a Consequence of Age-Specific Mortality.” Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pgen.1005974.s015\">https://doi.org/10.1371/journal.pgen.1005974.s015</a>.","apa":"Boehm, A., Arnoldini, M., Bergmiller, T., Röösli, T., Bigosch, C., &#38; Ackermann, M. (2016). Quantification of the growth rate reduction as a consequence of age-specific mortality. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1005974.s015\">https://doi.org/10.1371/journal.pgen.1005974.s015</a>"}},{"abstract":[{"lang":"eng","text":"In many applications, it is desirable to extract only the relevant aspects of data. A principled way to do this is the information bottleneck (IB) method, where one seeks a code that maximises information about a relevance variable, Y, while constraining the information encoded about the original data, X. Unfortunately however, the IB method is computationally demanding when data are high-dimensional and/or non-gaussian. Here we propose an approximate variational scheme for maximising a lower bound on the IB objective, analogous to variational EM. Using this method, we derive an IB algorithm to recover features that are both relevant and sparse. Finally, we demonstrate how kernelised versions of the algorithm can be used to address a broad range of problems with non-linear relation between X and Y."}],"language":[{"iso":"eng"}],"department":[{"_id":"GaTk"}],"publist_id":"6298","publisher":"Neural Information Processing Systems","day":"01","scopus_import":1,"date_published":"2016-12-01T00:00:00Z","oa_version":"Preprint","citation":{"chicago":"Chalk, Matthew J, Olivier Marre, and Gašper Tkačik. “Relevant Sparse Codes with Variational Information Bottleneck,” 29:1965–73. Neural Information Processing Systems, 2016.","apa":"Chalk, M. J., Marre, O., &#38; Tkačik, G. (2016). Relevant sparse codes with variational information bottleneck (Vol. 29, pp. 1965–1973). Presented at the NIPS: Neural Information Processing Systems, Barcelona, Spain: Neural Information Processing Systems.","ama":"Chalk MJ, Marre O, Tkačik G. Relevant sparse codes with variational information bottleneck. In: Vol 29. Neural Information Processing Systems; 2016:1965-1973.","mla":"Chalk, Matthew J., et al. <i>Relevant Sparse Codes with Variational Information Bottleneck</i>. Vol. 29, Neural Information Processing Systems, 2016, pp. 1965–73.","short":"M.J. Chalk, O. Marre, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 1965–1973.","ista":"Chalk MJ, Marre O, Tkačik G. 2016. Relevant sparse codes with variational information bottleneck. NIPS: Neural Information Processing Systems, Advances in Neural Information Processing Systems, vol. 29, 1965–1973.","ieee":"M. J. Chalk, O. Marre, and G. Tkačik, “Relevant sparse codes with variational information bottleneck,” presented at the NIPS: Neural Information Processing Systems, Barcelona, Spain, 2016, vol. 29, pp. 1965–1973."},"author":[{"id":"2BAAC544-F248-11E8-B48F-1D18A9856A87","last_name":"Chalk","full_name":"Chalk, Matthew J","first_name":"Matthew J","orcid":"0000-0001-7782-4436"},{"last_name":"Marre","full_name":"Marre, Olivier","first_name":"Olivier"},{"full_name":"Tkacik, Gasper","first_name":"Gasper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik"}],"status":"public","quality_controlled":"1","alternative_title":["Advances in Neural Information Processing Systems"],"volume":29,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:50:03Z","publication_status":"published","year":"2016","intvolume":"        29","month":"12","oa":1,"page":"1965-1973","main_file_link":[{"url":"https://arxiv.org/abs/1605.07332","open_access":"1"}],"title":"Relevant sparse codes with variational information bottleneck","type":"conference","_id":"1082","date_updated":"2021-01-12T06:48:09Z","related_material":{"link":[{"url":"https://papers.nips.cc/paper/6101-relevant-sparse-codes-with-variational-information-bottleneck","relation":"other"}]},"conference":{"start_date":"2016-12-05","end_date":"2016-12-10","location":"Barcelona, Spain","name":"NIPS: Neural Information Processing Systems"}},{"oa_version":"None","author":[{"full_name":"Booker, Sam","first_name":"Sam","last_name":"Booker"},{"last_name":"Althof","first_name":"Daniel","full_name":"Althof, Daniel"},{"first_name":"Anna","full_name":"Gross, Anna","last_name":"Gross"},{"last_name":"Loreth","first_name":"Desiree","full_name":"Loreth, Desiree"},{"last_name":"Müller","first_name":"Johanna","full_name":"Müller, Johanna"},{"first_name":"Andreas","full_name":"Unger, Andreas","last_name":"Unger"},{"last_name":"Fakler","first_name":"Bernd","full_name":"Fakler, Bernd"},{"first_name":"Andrea","full_name":"Varro, Andrea","last_name":"Varro"},{"last_name":"Watanabe","first_name":"Masahiko","full_name":"Watanabe, Masahiko"},{"full_name":"Gassmann, Martin","first_name":"Martin","last_name":"Gassmann"},{"first_name":"Bernhard","full_name":"Bettler, Bernhard","last_name":"Bettler"},{"first_name":"Ryuichi","full_name":"Shigemoto, Ryuichi","orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","last_name":"Shigemoto"},{"full_name":"Vida, Imre","first_name":"Imre","last_name":"Vida"},{"last_name":"Kulik","first_name":"Ákos","full_name":"Kulik, Ákos"}],"quality_controlled":"1","status":"public","citation":{"ama":"Booker S, Althof D, Gross A, et al. KCTD12 auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons. <i>Cerebral Cortex</i>. 2016;27(3):2318-2334. doi:<a href=\"https://doi.org/10.1093/cercor/bhw090\">10.1093/cercor/bhw090</a>","chicago":"Booker, Sam, Daniel Althof, Anna Gross, Desiree Loreth, Johanna Müller, Andreas Unger, Bernd Fakler, et al. “KCTD12 Auxiliary Proteins Modulate Kinetics of GABAB Receptor-Mediated Inhibition in Cholecystokinin-Containing Interneurons.” <i>Cerebral Cortex</i>. Oxford University Press, 2016. <a href=\"https://doi.org/10.1093/cercor/bhw090\">https://doi.org/10.1093/cercor/bhw090</a>.","apa":"Booker, S., Althof, D., Gross, A., Loreth, D., Müller, J., Unger, A., … Kulik, Á. (2016). KCTD12 auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons. <i>Cerebral Cortex</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/cercor/bhw090\">https://doi.org/10.1093/cercor/bhw090</a>","ieee":"S. Booker <i>et al.</i>, “KCTD12 auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons,” <i>Cerebral Cortex</i>, vol. 27, no. 3. Oxford University Press, pp. 2318–2334, 2016.","ista":"Booker S, Althof D, Gross A, Loreth D, Müller J, Unger A, Fakler B, Varro A, Watanabe M, Gassmann M, Bettler B, Shigemoto R, Vida I, Kulik Á. 2016. KCTD12 auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons. Cerebral Cortex. 27(3), 2318–2334.","mla":"Booker, Sam, et al. “KCTD12 Auxiliary Proteins Modulate Kinetics of GABAB Receptor-Mediated Inhibition in Cholecystokinin-Containing Interneurons.” <i>Cerebral Cortex</i>, vol. 27, no. 3, Oxford University Press, 2016, pp. 2318–34, doi:<a href=\"https://doi.org/10.1093/cercor/bhw090\">10.1093/cercor/bhw090</a>.","short":"S. Booker, D. Althof, A. Gross, D. Loreth, J. Müller, A. Unger, B. Fakler, A. Varro, M. Watanabe, M. Gassmann, B. Bettler, R. Shigemoto, I. Vida, Á. Kulik, Cerebral Cortex 27 (2016) 2318–2334."},"doi":"10.1093/cercor/bhw090","date_created":"2018-12-11T11:50:03Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":27,"abstract":[{"lang":"eng","text":" Cholecystokinin-expressing interneurons (CCK-INs) mediate behavior state-dependent inhibition in cortical circuits and themselves receive strong GABAergic input. However, it remains unclear to what extent GABABreceptors (GABABRs) contribute to their inhibitory control. Using immunoelectron microscopy, we found that CCK-INs in the rat hippocampus possessed high levels of dendritic GABABRs and KCTD12 auxiliary proteins, whereas postsynaptic effector Kir3 channels were present at lower levels. Consistently, whole-cell recordings revealed slow GABABR-mediated inhibitory postsynaptic currents (IPSCs) in most CCK-INs. In spite of the higher surface density of GABABRs in CCK-INs than in CA1 principal cells, the amplitudes of IPSCs were comparable, suggesting that the expression of Kir3 channels is the limiting factor for the GABABR currents in these INs. Morphological analysis showed that CCK-INs were diverse, comprising perisomatic-targeting basket cells (BCs), as well as dendrite-targeting (DT) interneurons, including a previously undescribed DT type. GABABR-mediated IPSCs in CCK-INs were large in BCs, but small in DT subtypes. In response to prolonged activation, GABABR-mediated currents displayed strong desensitization, which was absent in KCTD12-deficient mice. This study highlights that GABABRs differentially control CCK-IN subtypes, and the kinetics and desensitization of GABABR-mediated currents are modulated by KCTD12 proteins. "}],"department":[{"_id":"RySh"}],"language":[{"iso":"eng"}],"publist_id":"6297","publisher":"Oxford University Press","day":"12","date_published":"2016-04-12T00:00:00Z","publication":"Cerebral Cortex","title":"KCTD12 auxiliary proteins modulate kinetics of GABAB receptor-mediated inhibition in Cholecystokinin-containing interneurons","date_updated":"2021-01-12T06:48:09Z","_id":"1083","type":"journal_article","acknowledgement":"This work was supported by the Deutsche Forschungsgemeinschaft (DFG SFB 780 A2, A.K.; SFB TR3 I.V. and EXC 257, I.V.; FOR 2143, A.K. and I.V.), Spemann Graduate School (D.A.), BIOSS-2 (A6, A.K.), the Swiss National Science Foundation (3100A0-117816, B.B.), The McNaught Bequest (S.A.B. and I.V.), and Tenovus Scotland (I.V.).\r\n\r\n\r\nWe thank Cheryl Hutton and Chinmaya Sadangi for their contributions to neuronal reconstruction as well as Natalie Wernet, Sigrun Nestel, Anikó Schneider, Ina Wolter, and Ulrich Noeller for their excellent technical support. VGAT-Venus transgenic rats were generated by Drs Y. Yanagawa, M. Hirabayashi, and Y. Kawaguchi in National Institute for Physiological Sciences, Okazaki, Japan, using pCS2-Venus provided by Dr A. Miyawaki. The monoclonal mouse CCK antibody was generously provided by Dr G.V. Ohning, CURE Center, UCLA, CA. ","year":"2016","intvolume":"        27","month":"04","page":"2318 - 2334","issue":"3"},{"publisher":"Taylor & Francis","day":"27","date_published":"2016-07-27T00:00:00Z","publication":"BioArchitecture","abstract":[{"lang":"eng","text":"Cell geometry is tightly coupled to gene expression patterns within the tissue microenvironment. This perspective synthesizes evidence that the 3D organization of chromosomes is a critical intermediate for geometric control of genomic programs. Using a combination of experiments and modeling we outline approaches to decipher the mechano-genomic code that governs cellular homeostasis and reprogramming."}],"language":[{"iso":"eng"}],"publist_id":"6289","doi":"10.1080/19490992.2016.1201620","date_created":"2018-12-11T11:50:05Z","publication_status":"published","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","volume":6,"oa_version":"None","status":"public","author":[{"orcid":"0000-0002-7008-0216","first_name":"Caroline","full_name":"Uhler, Caroline","last_name":"Uhler","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"G V","full_name":"Shivashankar, G V","last_name":"Shivashankar"}],"quality_controlled":"1","extern":"1","citation":{"ama":"Uhler C, Shivashankar GV. Geometric control and modeling of genome reprogramming. <i>BioArchitecture</i>. 2016;6(4):76-84. doi:<a href=\"https://doi.org/10.1080/19490992.2016.1201620\">10.1080/19490992.2016.1201620</a>","apa":"Uhler, C., &#38; Shivashankar, G. V. (2016). Geometric control and modeling of genome reprogramming. <i>BioArchitecture</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/19490992.2016.1201620\">https://doi.org/10.1080/19490992.2016.1201620</a>","chicago":"Uhler, Caroline, and G V Shivashankar. “Geometric Control and Modeling of Genome Reprogramming.” <i>BioArchitecture</i>. Taylor &#38; Francis, 2016. <a href=\"https://doi.org/10.1080/19490992.2016.1201620\">https://doi.org/10.1080/19490992.2016.1201620</a>.","ista":"Uhler C, Shivashankar GV. 2016. Geometric control and modeling of genome reprogramming. BioArchitecture. 6(4), 76–84.","ieee":"C. Uhler and G. V. Shivashankar, “Geometric control and modeling of genome reprogramming,” <i>BioArchitecture</i>, vol. 6, no. 4. Taylor &#38; Francis, pp. 76–84, 2016.","mla":"Uhler, Caroline, and G. V. Shivashankar. “Geometric Control and Modeling of Genome Reprogramming.” <i>BioArchitecture</i>, vol. 6, no. 4, Taylor &#38; Francis, 2016, pp. 76–84, doi:<a href=\"https://doi.org/10.1080/19490992.2016.1201620\">10.1080/19490992.2016.1201620</a>.","short":"C. Uhler, G.V. Shivashankar, BioArchitecture 6 (2016) 76–84."},"page":"76 - 84","issue":"4","intvolume":"         6","year":"2016","month":"07","date_updated":"2021-01-12T06:48:11Z","type":"journal_article","_id":"1088","title":"Geometric control and modeling of genome reprogramming"}]