[{"file_date_updated":"2020-07-14T12:44:58Z","month":"02","department":[{"_id":"MiSi"}],"abstract":[{"lang":"eng","text":"To induce adaptive immunity, dendritic cells (DCs) migrate through afferent lymphatic vessels (LVs) to draining lymph nodes (dLNs). This process occurs in several consecutive steps. Upon entry into lymphatic capillaries, DCs first actively crawl into downstream collecting vessels. From there, they are next passively and rapidly transported to the dLN by lymph flow. Here, we describe a role for the chemokine CCL21 in intralymphatic DC crawling. Performing time-lapse imaging in murine skin, we found that blockade of CCL21-but not the absence of lymph flow-completely abolished DC migration from capillaries toward collecting vessels and reduced the ability of intralymphatic DCs to emigrate from skin. Moreover, we found that in vitro low laminar flow established a CCL21 gradient along lymphatic endothelial monolayers, thereby inducing downstream-directed DC migration. These findings reveal a role for intralymphatic CCL21 in promoting DC trafficking to dLNs, through the formation of a flow-induced gradient."}],"oa_version":"Published Version","issue":"7","day":"23","publist_id":"5697","intvolume":"        14","publisher":"Cell Press","citation":{"apa":"Russo, E., Teijeira, A., Vaahtomeri, K., Willrodt, A., Bloch, J., Nitschké, M., … Halin, C. (2016). Intralymphatic CCL21 promotes tissue egress of dendritic cells through afferent lymphatic vessels. <i>Cell Reports</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.celrep.2016.01.048\">https://doi.org/10.1016/j.celrep.2016.01.048</a>","ieee":"E. Russo <i>et al.</i>, “Intralymphatic CCL21 promotes tissue egress of dendritic cells through afferent lymphatic vessels,” <i>Cell Reports</i>, vol. 14, no. 7. Cell Press, pp. 1723–1734, 2016.","ista":"Russo E, Teijeira A, Vaahtomeri K, Willrodt A, Bloch J, Nitschké M, Santambrogio L, Kerjaschki D, Sixt MK, Halin C. 2016. Intralymphatic CCL21 promotes tissue egress of dendritic cells through afferent lymphatic vessels. Cell Reports. 14(7), 1723–1734.","short":"E. Russo, A. Teijeira, K. Vaahtomeri, A. Willrodt, J. Bloch, M. Nitschké, L. Santambrogio, D. Kerjaschki, M.K. Sixt, C. Halin, Cell Reports 14 (2016) 1723–1734.","mla":"Russo, Erica, et al. “Intralymphatic CCL21 Promotes Tissue Egress of Dendritic Cells through Afferent Lymphatic Vessels.” <i>Cell Reports</i>, vol. 14, no. 7, Cell Press, 2016, pp. 1723–34, doi:<a href=\"https://doi.org/10.1016/j.celrep.2016.01.048\">10.1016/j.celrep.2016.01.048</a>.","ama":"Russo E, Teijeira A, Vaahtomeri K, et al. Intralymphatic CCL21 promotes tissue egress of dendritic cells through afferent lymphatic vessels. <i>Cell Reports</i>. 2016;14(7):1723-1734. doi:<a href=\"https://doi.org/10.1016/j.celrep.2016.01.048\">10.1016/j.celrep.2016.01.048</a>","chicago":"Russo, Erica, Alvaro Teijeira, Kari Vaahtomeri, Ann Willrodt, Joël Bloch, Maximilian Nitschké, Laura Santambrogio, Dontscho Kerjaschki, Michael K Sixt, and Cornelia Halin. “Intralymphatic CCL21 Promotes Tissue Egress of Dendritic Cells through Afferent Lymphatic Vessels.” <i>Cell Reports</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.celrep.2016.01.048\">https://doi.org/10.1016/j.celrep.2016.01.048</a>."},"file":[{"file_id":"4948","access_level":"open_access","checksum":"c98c1151d5f1e5ce1643a83d8d7f3c29","relation":"main_file","creator":"system","file_name":"IST-2016-515-v1+1_1-s2.0-S2211124716300262-main.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:44:58Z","date_created":"2018-12-12T10:12:30Z","file_size":5489897}],"oa":1,"publication_status":"published","year":"2016","ddc":["570"],"volume":14,"date_updated":"2021-01-12T06:51:07Z","_id":"1490","type":"journal_article","quality_controlled":"1","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"status":"public","scopus_import":1,"author":[{"first_name":"Erica","full_name":"Russo, Erica","last_name":"Russo"},{"first_name":"Alvaro","full_name":"Teijeira, Alvaro","last_name":"Teijeira"},{"id":"368EE576-F248-11E8-B48F-1D18A9856A87","last_name":"Vaahtomeri","orcid":"0000-0001-7829-3518","full_name":"Vaahtomeri, Kari","first_name":"Kari"},{"last_name":"Willrodt","full_name":"Willrodt, Ann","first_name":"Ann"},{"last_name":"Bloch","first_name":"Joël","full_name":"Bloch, Joël"},{"first_name":"Maximilian","full_name":"Nitschké, Maximilian","last_name":"Nitschké"},{"first_name":"Laura","full_name":"Santambrogio, Laura","last_name":"Santambrogio"},{"first_name":"Dontscho","full_name":"Kerjaschki, Dontscho","last_name":"Kerjaschki"},{"last_name":"Sixt","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","first_name":"Michael K"},{"last_name":"Halin","full_name":"Halin, Cornelia","first_name":"Cornelia"}],"date_published":"2016-02-23T00:00:00Z","pubrep_id":"515","language":[{"iso":"eng"}],"title":"Intralymphatic CCL21 promotes tissue egress of dendritic cells through afferent lymphatic vessels","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","doi":"10.1016/j.celrep.2016.01.048","date_created":"2018-12-11T11:52:19Z","publication":"Cell Reports","has_accepted_license":"1","page":"1723 - 1734","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87"},{"oa":1,"publication_status":"published","year":"2016","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1405.3220"}],"publisher":"American Mathematical Society","citation":{"ieee":"M. Lewin, P. Nam, and N. Rougerie, “The mean-field approximation and the non-linear Schrödinger functional for trapped Bose gases,” <i>Transactions of the American Mathematical Society</i>, vol. 368, no. 9. American Mathematical Society, pp. 6131–6157, 2016.","apa":"Lewin, M., Nam, P., &#38; Rougerie, N. (2016). The mean-field approximation and the non-linear Schrödinger functional for trapped Bose gases. <i>Transactions of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/tran/6537\">https://doi.org/10.1090/tran/6537</a>","short":"M. Lewin, P. Nam, N. Rougerie, Transactions of the American Mathematical Society 368 (2016) 6131–6157.","ista":"Lewin M, Nam P, Rougerie N. 2016. The mean-field approximation and the non-linear Schrödinger functional for trapped Bose gases. Transactions of the American Mathematical Society. 368(9), 6131–6157.","ama":"Lewin M, Nam P, Rougerie N. The mean-field approximation and the non-linear Schrödinger functional for trapped Bose gases. <i>Transactions of the American Mathematical Society</i>. 2016;368(9):6131-6157. doi:<a href=\"https://doi.org/10.1090/tran/6537\">10.1090/tran/6537</a>","chicago":"Lewin, Mathieu, Phan Nam, and Nicolas Rougerie. “The Mean-Field Approximation and the Non-Linear Schrödinger Functional for Trapped Bose Gases.” <i>Transactions of the American Mathematical Society</i>. American Mathematical Society, 2016. <a href=\"https://doi.org/10.1090/tran/6537\">https://doi.org/10.1090/tran/6537</a>.","mla":"Lewin, Mathieu, et al. “The Mean-Field Approximation and the Non-Linear Schrödinger Functional for Trapped Bose Gases.” <i>Transactions of the American Mathematical Society</i>, vol. 368, no. 9, American Mathematical Society, 2016, pp. 6131–57, doi:<a href=\"https://doi.org/10.1090/tran/6537\">10.1090/tran/6537</a>."},"publist_id":"5692","intvolume":"       368","abstract":[{"lang":"eng","text":"We study the ground state of a trapped Bose gas, starting from the full many-body Schrödinger Hamiltonian, and derive the non-linear Schrödinger energy functional in the limit of a large particle number, when the interaction potential converges slowly to a Dirac delta function. Our method is based on quantitative estimates on the discrepancy between the full many-body energy and its mean-field approximation using Hartree states. These are proved using finite dimensional localization and a quantitative version of the quantum de Finetti theorem. Our approach covers the case of attractive interactions in the regime of stability. In particular, our main new result is a derivation of the 2D attractive non-linear Schrödinger ground state."}],"oa_version":"Submitted Version","day":"01","issue":"9","month":"01","department":[{"_id":"RoSe"}],"acknowledgement":"The authors acknowledge financial support from the European Research Council (FP7/2007-2013 Grant Agreement MNIQS 258023) and the ANR (Mathostaq project, ANR-13-JS01-0005-01). The second and third authors have benefited from the hospitality of the Institute for Mathematical Science of the National University of Singapore.","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:52:20Z","publication":"Transactions of the American Mathematical Society","page":"6131 - 6157","title":"The mean-field approximation and the non-linear Schrödinger functional for trapped Bose gases","doi":"10.1090/tran/6537","language":[{"iso":"eng"}],"scopus_import":1,"author":[{"full_name":"Lewin, Mathieu","first_name":"Mathieu","last_name":"Lewin"},{"id":"404092F4-F248-11E8-B48F-1D18A9856A87","last_name":"Nam","full_name":"Nam, Phan","first_name":"Phan"},{"first_name":"Nicolas","full_name":"Rougerie, Nicolas","last_name":"Rougerie"}],"date_published":"2016-01-01T00:00:00Z","quality_controlled":"1","status":"public","volume":368,"type":"journal_article","date_updated":"2021-01-12T06:51:07Z","_id":"1491"},{"month":"03","department":[{"_id":"EvBe"}],"oa_version":"Published Version","issue":"4","day":"01","abstract":[{"text":"To sustain a lifelong ability to initiate organs, plants retain pools of undifferentiated cells with a preserved prolif eration capacity. The root pericycle represents a unique tissue with conditional meristematic activity, and its tight control determines initiation of lateral organs. Here we show that the meristematic activity of the pericycle is constrained by the interaction with the adjacent endodermis. Release of these restraints by elimination of endo dermal cells by single-cell ablation triggers the pericycle to re-enter the cell cycle. We found that endodermis removal substitutes for the phytohormone auxin-dependent initiation of the pericycle meristematic activity. However, auxin is indispensable to steer the cell division plane orientation of new organ-defining divisions. We propose a dual, spatiotemporally distinct role for auxin during lateral root initiation. In the endodermis, auxin releases constraints arising from cell-to-cell interactions that compromise the pericycle meristematic activity, whereas, in the pericycle, auxin defines the orientation of the cell division plane to initiate lateral roots.","lang":"eng"}],"acknowledged_ssus":[{"_id":"LifeSc"}],"file_date_updated":"2020-07-14T12:44:58Z","pmid":1,"year":"2016","ddc":["570"],"publication_status":"published","oa":1,"intvolume":"        30","publist_id":"5691","file":[{"date_updated":"2020-07-14T12:44:58Z","content_type":"application/pdf","file_name":"2016_GeneDev_Marhavy.pdf","file_size":2757636,"date_created":"2019-01-25T09:56:11Z","file_id":"5883","access_level":"open_access","creator":"kschuh","checksum":"ea394498ee56270e021d1028a29358a0","relation":"main_file"}],"citation":{"ista":"Marhavý P, Montesinos López JC, Abuzeineh A, Van Damme D, Vermeer J, Duclercq J, Rakusova H, Marhavá P, Friml J, Geldner N, Benková E. 2016. Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation. Genes and Development. 30(4), 471–483.","short":"P. Marhavý, J.C. Montesinos López, A. Abuzeineh, D. Van Damme, J. Vermeer, J. Duclercq, H. Rakusova, P. Marhavá, J. Friml, N. Geldner, E. Benková, Genes and Development 30 (2016) 471–483.","mla":"Marhavý, Peter, et al. “Targeted Cell Elimination Reveals an Auxin-Guided Biphasic Mode of Lateral Root Initiation.” <i>Genes and Development</i>, vol. 30, no. 4, Cold Spring Harbor Laboratory Press, 2016, pp. 471–83, doi:<a href=\"https://doi.org/10.1101/gad.276964.115\">10.1101/gad.276964.115</a>.","ama":"Marhavý P, Montesinos López JC, Abuzeineh A, et al. Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation. <i>Genes and Development</i>. 2016;30(4):471-483. doi:<a href=\"https://doi.org/10.1101/gad.276964.115\">10.1101/gad.276964.115</a>","chicago":"Marhavý, Peter, Juan C Montesinos López, Anas Abuzeineh, Daniël Van Damme, Joop Vermeer, Jérôme Duclercq, Hana Rakusova, et al. “Targeted Cell Elimination Reveals an Auxin-Guided Biphasic Mode of Lateral Root Initiation.” <i>Genes and Development</i>. Cold Spring Harbor Laboratory Press, 2016. <a href=\"https://doi.org/10.1101/gad.276964.115\">https://doi.org/10.1101/gad.276964.115</a>.","apa":"Marhavý, P., Montesinos López, J. C., Abuzeineh, A., Van Damme, D., Vermeer, J., Duclercq, J., … Benková, E. (2016). Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation. <i>Genes and Development</i>. Cold Spring Harbor Laboratory Press. <a href=\"https://doi.org/10.1101/gad.276964.115\">https://doi.org/10.1101/gad.276964.115</a>","ieee":"P. Marhavý <i>et al.</i>, “Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation,” <i>Genes and Development</i>, vol. 30, no. 4. Cold Spring Harbor Laboratory Press, pp. 471–483, 2016."},"publisher":"Cold Spring Harbor Laboratory Press","date_published":"2016-03-01T00:00:00Z","scopus_import":1,"author":[{"id":"3F45B078-F248-11E8-B48F-1D18A9856A87","last_name":"Marhavy","first_name":"Peter","orcid":"0000-0001-5227-5741","full_name":"Marhavy, Peter"},{"first_name":"Juan C","orcid":"0000-0001-9179-6099","full_name":"Montesinos López, Juan C","id":"310A8E3E-F248-11E8-B48F-1D18A9856A87","last_name":"Montesinos López"},{"first_name":"Anas","full_name":"Abuzeineh, Anas","last_name":"Abuzeineh"},{"first_name":"Daniël","full_name":"Van Damme, Daniël","last_name":"Van Damme"},{"full_name":"Vermeer, Joop","first_name":"Joop","last_name":"Vermeer"},{"first_name":"Jérôme","full_name":"Duclercq, Jérôme","last_name":"Duclercq"},{"last_name":"Rakusova","first_name":"Hana","full_name":"Rakusova, Hana"},{"last_name":"Marhavá","id":"44E59624-F248-11E8-B48F-1D18A9856A87","first_name":"Petra","full_name":"Marhavá, Petra"},{"first_name":"Jirí","orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"},{"full_name":"Geldner, Niko","first_name":"Niko","last_name":"Geldner"},{"orcid":"0000-0002-8510-9739","full_name":"Benková, Eva","first_name":"Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","last_name":"Benková"}],"language":[{"iso":"eng"}],"_id":"1492","date_updated":"2021-01-12T06:51:08Z","type":"journal_article","volume":30,"tmp":{"short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"status":"public","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported by a European Research Council Starting Inde-pendent Research grant (ERC-2007-Stg-207362-HCPO to J.D.), Research Foundation-Flanders (G033711N to A.A.), and the Austrian Science Fund (FWF01_I1774S to E.B.). P.M. is indebted to the Federation of European Biochemical Sciences for a Long-Term Fellowship. ","license":"https://creativecommons.org/licenses/by-nc/4.0/","doi":"10.1101/gad.276964.115","title":"Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation","external_id":{"pmid":["    26883363"]},"page":"471 - 483","date_created":"2018-12-11T11:52:20Z","publication":"Genes and Development","has_accepted_license":"1"},{"_id":"1493","type":"journal_article","date_updated":"2021-01-12T06:51:08Z","volume":19,"status":"public","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"quality_controlled":"1","pubrep_id":"514","date_published":"2016-03-01T00:00:00Z","author":[{"id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","last_name":"Petrat","orcid":"0000-0002-9166-5889","full_name":"Petrat, Sören P","first_name":"Sören P"},{"last_name":"Pickl","full_name":"Pickl, Peter","first_name":"Peter"}],"scopus_import":1,"language":[{"iso":"eng"}],"doi":"10.1007/s11040-016-9204-2","ec_funded":1,"title":"A new method and a new scaling for deriving fermionic mean-field dynamics","has_accepted_license":"1","article_number":"3","publication":"Mathematical Physics, Analysis and Geometry","date_created":"2018-12-11T11:52:20Z","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). ","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"file_date_updated":"2020-07-14T12:44:58Z","article_processing_charge":"Yes (via OA deal)","month":"03","department":[{"_id":"RoSe"}],"issue":"1","day":"01","oa_version":"Published Version","abstract":[{"text":"We introduce a new method for deriving the time-dependent Hartree or Hartree-Fock equations as an effective mean-field dynamics from the microscopic Schrödinger equation for fermionic many-particle systems in quantum mechanics. The method is an adaption of the method used in Pickl (Lett. Math. Phys. 97 (2) 151–164 2011) for bosonic systems to fermionic systems. It is based on a Gronwall type estimate for a suitable measure of distance between the microscopic solution and an antisymmetrized product state. We use this method to treat a new mean-field limit for fermions with long-range interactions in a large volume. Some of our results hold for singular attractive or repulsive interactions. We can also treat Coulomb interaction assuming either a mild singularity cutoff or certain regularity conditions on the solutions to the Hartree(-Fock) equations. In the considered limit, the kinetic and interaction energy are of the same order, while the average force is subleading. For some interactions, we prove that the Hartree(-Fock) dynamics is a more accurate approximation than a simpler dynamics that one would expect from the subleading force. With our method we also treat the mean-field limit coupled to a semiclassical limit, which was discussed in the literature before, and we recover some of the previous results. All results hold for initial data close (but not necessarily equal) to antisymmetrized product states and we always provide explicit rates of convergence.","lang":"eng"}],"intvolume":"        19","publist_id":"5690","file":[{"access_level":"open_access","file_id":"5246","creator":"system","relation":"main_file","checksum":"eb5d2145ef0d377c4f78bf06e18f4529","date_updated":"2020-07-14T12:44:58Z","content_type":"application/pdf","file_name":"IST-2016-514-v1+1_s11040-016-9204-2.pdf","file_size":911310,"date_created":"2018-12-12T10:16:55Z"}],"citation":{"apa":"Petrat, S. P., &#38; Pickl, P. (2016). A new method and a new scaling for deriving fermionic mean-field dynamics. <i>Mathematical Physics, Analysis and Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s11040-016-9204-2\">https://doi.org/10.1007/s11040-016-9204-2</a>","ieee":"S. P. Petrat and P. Pickl, “A new method and a new scaling for deriving fermionic mean-field dynamics,” <i>Mathematical Physics, Analysis and Geometry</i>, vol. 19, no. 1. Springer, 2016.","mla":"Petrat, Sören P., and Peter Pickl. “A New Method and a New Scaling for Deriving Fermionic Mean-Field Dynamics.” <i>Mathematical Physics, Analysis and Geometry</i>, vol. 19, no. 1, 3, Springer, 2016, doi:<a href=\"https://doi.org/10.1007/s11040-016-9204-2\">10.1007/s11040-016-9204-2</a>.","chicago":"Petrat, Sören P, and Peter Pickl. “A New Method and a New Scaling for Deriving Fermionic Mean-Field Dynamics.” <i>Mathematical Physics, Analysis and Geometry</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s11040-016-9204-2\">https://doi.org/10.1007/s11040-016-9204-2</a>.","ama":"Petrat SP, Pickl P. A new method and a new scaling for deriving fermionic mean-field dynamics. <i>Mathematical Physics, Analysis and Geometry</i>. 2016;19(1). doi:<a href=\"https://doi.org/10.1007/s11040-016-9204-2\">10.1007/s11040-016-9204-2</a>","ista":"Petrat SP, Pickl P. 2016. A new method and a new scaling for deriving fermionic mean-field dynamics. Mathematical Physics, Analysis and Geometry. 19(1), 3.","short":"S.P. Petrat, P. Pickl, Mathematical Physics, Analysis and Geometry 19 (2016)."},"publisher":"Springer","ddc":["510","530"],"year":"2016","publication_status":"published","oa":1},{"publisher":"Nature Publishing Group","citation":{"short":"G.M. Lemoult, L. Shi, K. Avila, S.V. Jalikop, M. Avila, B. Hof, Nature Physics 12 (2016) 254–258.","ista":"Lemoult GM, Shi L, Avila K, Jalikop SV, Avila M, Hof B. 2016. Directed percolation phase transition to sustained turbulence in Couette flow. Nature Physics. 12(3), 254–258.","ama":"Lemoult GM, Shi L, Avila K, Jalikop SV, Avila M, Hof B. Directed percolation phase transition to sustained turbulence in Couette flow. <i>Nature Physics</i>. 2016;12(3):254-258. doi:<a href=\"https://doi.org/10.1038/nphys3675\">10.1038/nphys3675</a>","chicago":"Lemoult, Grégoire M, Liang Shi, Kerstin Avila, Shreyas V Jalikop, Marc Avila, and Björn Hof. “Directed Percolation Phase Transition to Sustained Turbulence in Couette Flow.” <i>Nature Physics</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nphys3675\">https://doi.org/10.1038/nphys3675</a>.","mla":"Lemoult, Grégoire M., et al. “Directed Percolation Phase Transition to Sustained Turbulence in Couette Flow.” <i>Nature Physics</i>, vol. 12, no. 3, Nature Publishing Group, 2016, pp. 254–58, doi:<a href=\"https://doi.org/10.1038/nphys3675\">10.1038/nphys3675</a>.","ieee":"G. M. Lemoult, L. Shi, K. Avila, S. V. Jalikop, M. Avila, and B. Hof, “Directed percolation phase transition to sustained turbulence in Couette flow,” <i>Nature Physics</i>, vol. 12, no. 3. Nature Publishing Group, pp. 254–258, 2016.","apa":"Lemoult, G. M., Shi, L., Avila, K., Jalikop, S. V., Avila, M., &#38; Hof, B. (2016). Directed percolation phase transition to sustained turbulence in Couette flow. <i>Nature Physics</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nphys3675\">https://doi.org/10.1038/nphys3675</a>"},"publist_id":"5685","intvolume":"        12","publication_status":"published","year":"2016","abstract":[{"text":"Turbulence is one of the most frequently encountered non-equilibrium phenomena in nature, yet characterizing the transition that gives rise to turbulence in basic shear flows has remained an elusive task. Although, in recent studies, critical points marking the onset of sustained turbulence have been determined for several such flows, the physical nature of the transition could not be fully explained. In extensive experimental and computational studies we show for the example of Couette flow that the onset of turbulence is a second-order phase transition and falls into the directed percolation universality class. Consequently, the complex laminar–turbulent patterns distinctive for the onset of turbulence in shear flows result from short-range interactions of turbulent domains and are characterized by universal critical exponents. More generally, our study demonstrates that even high-dimensional systems far from equilibrium such as turbulence exhibit universality at onset and that here the collective dynamics obeys simple rules.","lang":"eng"}],"oa_version":"None","issue":"3","day":"15","month":"02","department":[{"_id":"BjHo"}],"date_created":"2018-12-11T11:52:21Z","publication":"Nature Physics","page":"254 - 258","title":"Directed percolation phase transition to sustained turbulence in Couette flow","ec_funded":1,"doi":"10.1038/nphys3675","project":[{"call_identifier":"FP7","name":"Decoding the complexity of turbulence at its origin","grant_number":"306589","_id":"25152F3A-B435-11E9-9278-68D0E5697425"},{"_id":"2511D90C-B435-11E9-9278-68D0E5697425","name":"Astrophysical instability of currents and turbulences","grant_number":"SFB 963  TP A8"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank P. Maier for providing valuable ideas and supporting us in the technical aspects. Discussions with D. Barkley, Y. Duguet, B. Eckhart, N. Goldenfeld, P. Manneville and K. Takeuchi are gratefully acknowledged. We acknowledge the Deutsche Forschungsgemeinschaft (Project No. FOR 1182), and the European Research Council under the European Union’s Seventh Framework Programme (FP/2007-2013)/ERC Grant Agreement 306589 for financial support. L.S. and B.H. acknowledge research funding by Deutsche Forschungsgemeinschaft (DFG) under Grant No. SFB 963/1 (project A8). Numerical simulations were performed thanks to the CPU time allocations of JUROPA in Juelich Supercomputing Center (project HGU17) and of the Max Planck Computing and Data Facility (Garching, Germany). Excellent technical support from M. Rampp on the hybrid code nsCouette is appreciated.","quality_controlled":"1","status":"public","volume":12,"date_updated":"2021-01-12T06:51:08Z","_id":"1494","type":"journal_article","language":[{"iso":"eng"}],"scopus_import":1,"author":[{"last_name":"Lemoult","id":"4787FE80-F248-11E8-B48F-1D18A9856A87","full_name":"Lemoult, Grégoire M","first_name":"Grégoire M"},{"id":"374A3F1A-F248-11E8-B48F-1D18A9856A87","last_name":"Shi","first_name":"Liang","full_name":"Shi, Liang"},{"last_name":"Avila","first_name":"Kerstin","full_name":"Avila, Kerstin"},{"first_name":"Shreyas V","full_name":"Jalikop, Shreyas V","id":"44A1D772-F248-11E8-B48F-1D18A9856A87","last_name":"Jalikop"},{"full_name":"Avila, Marc","first_name":"Marc","last_name":"Avila"},{"last_name":"Hof","id":"3A374330-F248-11E8-B48F-1D18A9856A87","first_name":"Björn","full_name":"Hof, Björn","orcid":"0000-0003-2057-2754"}],"date_published":"2016-02-15T00:00:00Z"},{"quality_controlled":"1","status":"public","volume":93,"date_updated":"2021-01-12T06:51:09Z","_id":"1496","type":"journal_article","language":[{"iso":"eng"}],"author":[{"full_name":"Amaro, Pedro","first_name":"Pedro","last_name":"Amaro"},{"first_name":"Filippo","full_name":"Fratini, Filippo","last_name":"Fratini"},{"id":"3C325E5E-F248-11E8-B48F-1D18A9856A87","last_name":"Safari","full_name":"Safari, Laleh","first_name":"Laleh"},{"full_name":"Machado, Jorge","first_name":"Jorge","last_name":"Machado"},{"last_name":"Guerra","first_name":"Mauro","full_name":"Guerra, Mauro"},{"full_name":"Indelicato, Paul","first_name":"Paul","last_name":"Indelicato"},{"last_name":"Santos","full_name":"Santos, José","first_name":"José"}],"scopus_import":1,"date_published":"2016-03-07T00:00:00Z","article_number":"032502","publication":"Physical Review A - Atomic, Molecular, and Optical Physics","date_created":"2018-12-11T11:52:21Z","ec_funded":1,"title":"Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential model","doi":"10.1103/PhysRevA.93.032502","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7"}],"acknowledgement":"This  research  was  supported  in  part  by  FCT, Portugal, through Project No. PTDC/FIS/117606/2010, financed by the European Community  Fund  FEDER  through  the  COMPETE. ","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"The two-photon 1s2 2s 2p 3P0 1s22s2 1S0 transition in berylliumlike ions is theoretically investigated within a fully relativistic framework and a second-order perturbation theory. We focus our analysis on how electron correlation, as well as the negative-energy spectrum, can affect the forbidden E1M1 decay rate. For this purpose, we include the electronic correlation via an effective local potential and within a single configuration-state model. Due to its experimental interest, evaluations of decay rates are performed for berylliumlike xenon and uranium. We find that the negative-energy contribution can be neglected at the present level of accuracy in the evaluation of the decay rate. On the other hand, if contributions of electronic correlation are not carefully taken into account, it may change the lifetime of the metastable state by up to 20%. By performing a full-relativistic jj-coupling calculation, we found a decrease of the decay rate by two orders of magnitude compared to non-relativistic LS-coupling calculations, for the selected heavy ions."}],"issue":"3","day":"07","oa_version":"Preprint","month":"03","department":[{"_id":"MiLe"}],"publisher":"American Physical Society","citation":{"mla":"Amaro, Pedro, et al. “Relativistic Evaluation of the Two-Photon Decay of the Metastable 1s22s2p3P0 State in Berylliumlike Ions with an Effective-Potential Model.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 93, no. 3, 032502, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevA.93.032502\">10.1103/PhysRevA.93.032502</a>.","ama":"Amaro P, Fratini F, Safari L, et al. Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential model. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2016;93(3). doi:<a href=\"https://doi.org/10.1103/PhysRevA.93.032502\">10.1103/PhysRevA.93.032502</a>","chicago":"Amaro, Pedro, Filippo Fratini, Laleh Safari, Jorge Machado, Mauro Guerra, Paul Indelicato, and José Santos. “Relativistic Evaluation of the Two-Photon Decay of the Metastable 1s22s2p3P0 State in Berylliumlike Ions with an Effective-Potential Model.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevA.93.032502\">https://doi.org/10.1103/PhysRevA.93.032502</a>.","ista":"Amaro P, Fratini F, Safari L, Machado J, Guerra M, Indelicato P, Santos J. 2016. Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential model. Physical Review A - Atomic, Molecular, and Optical Physics. 93(3), 032502.","short":"P. Amaro, F. Fratini, L. Safari, J. Machado, M. Guerra, P. Indelicato, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 93 (2016).","apa":"Amaro, P., Fratini, F., Safari, L., Machado, J., Guerra, M., Indelicato, P., &#38; Santos, J. (2016). Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential model. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.93.032502\">https://doi.org/10.1103/PhysRevA.93.032502</a>","ieee":"P. Amaro <i>et al.</i>, “Relativistic evaluation of the two-photon decay of the metastable 1s22s2p3P0 state in berylliumlike ions with an effective-potential model,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 93, no. 3. American Physical Society, 2016."},"publist_id":"5683","intvolume":"        93","oa":1,"publication_status":"published","year":"2016","main_file_link":[{"url":"http://arxiv.org/abs/1508.06169","open_access":"1"}]},{"intvolume":"       202","publist_id":"5658","citation":{"ieee":"K. Lohse, M. Chmelik, S. Martin, and N. H. Barton, “Efficient strategies for calculating blockwise likelihoods under the coalescent,” <i>Genetics</i>, vol. 202, no. 2. Genetics Society of America, pp. 775–786, 2016.","apa":"Lohse, K., Chmelik, M., Martin, S., &#38; Barton, N. H. (2016). Efficient strategies for calculating blockwise likelihoods under the coalescent. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.115.183814\">https://doi.org/10.1534/genetics.115.183814</a>","ama":"Lohse K, Chmelik M, Martin S, Barton NH. Efficient strategies for calculating blockwise likelihoods under the coalescent. <i>Genetics</i>. 2016;202(2):775-786. doi:<a href=\"https://doi.org/10.1534/genetics.115.183814\">10.1534/genetics.115.183814</a>","chicago":"Lohse, Konrad, Martin Chmelik, Simon Martin, and Nicholas H Barton. “Efficient Strategies for Calculating Blockwise Likelihoods under the Coalescent.” <i>Genetics</i>. Genetics Society of America, 2016. <a href=\"https://doi.org/10.1534/genetics.115.183814\">https://doi.org/10.1534/genetics.115.183814</a>.","mla":"Lohse, Konrad, et al. “Efficient Strategies for Calculating Blockwise Likelihoods under the Coalescent.” <i>Genetics</i>, vol. 202, no. 2, Genetics Society of America, 2016, pp. 775–86, doi:<a href=\"https://doi.org/10.1534/genetics.115.183814\">10.1534/genetics.115.183814</a>.","short":"K. Lohse, M. Chmelik, S. Martin, N.H. Barton, Genetics 202 (2016) 775–786.","ista":"Lohse K, Chmelik M, Martin S, Barton NH. 2016. Efficient strategies for calculating blockwise likelihoods under the coalescent. Genetics. 202(2), 775–786."},"file":[{"file_name":"IST-2016-561-v1+1_Lohse_et_al_Genetics_2015.pdf","date_updated":"2020-07-14T12:45:00Z","content_type":"application/pdf","file_size":957466,"date_created":"2018-12-12T10:16:51Z","access_level":"open_access","file_id":"5241","checksum":"41c9b5d72e7fe4624dd22dfe622337d5","relation":"main_file","creator":"system"}],"publisher":"Genetics Society of America","ddc":["570"],"year":"2016","publication_status":"published","oa":1,"file_date_updated":"2020-07-14T12:45:00Z","pmid":1,"article_processing_charge":"No","month":"02","department":[{"_id":"KrCh"},{"_id":"NiBa"}],"issue":"2","day":"01","oa_version":"Preprint","abstract":[{"lang":"eng","text":"The inference of demographic history from genome data is hindered by a lack of efficient computational approaches. In particular, it has proved difficult to exploit the information contained in the distribution of genealogies across the genome. We have previously shown that the generating function (GF) of genealogies can be used to analytically compute likelihoods of demographic models from configurations of mutations in short sequence blocks (Lohse et al. 2011). Although the GF has a simple, recursive form, the size of such likelihood calculations explodes quickly with the number of individuals and applications of this framework have so far been mainly limited to small samples (pairs and triplets) for which the GF can be written by hand. Here we investigate several strategies for exploiting the inherent symmetries of the coalescent. In particular, we show that the GF of genealogies can be decomposed into a set of equivalence classes that allows likelihood calculations from nontrivial samples. Using this strategy, we automated blockwise likelihood calculations for a general set of demographic scenarios in Mathematica. These histories may involve population size changes, continuous migration, discrete divergence, and admixture between multiple populations. To give a concrete example, we calculate the likelihood for a model of isolation with migration (IM), assuming two diploid samples without phase and outgroup information. We demonstrate the new inference scheme with an analysis of two individual butterfly genomes from the sister species Heliconius melpomene rosina and H. cydno."}],"article_type":"original","doi":"10.1534/genetics.115.183814","title":"Efficient strategies for calculating blockwise likelihoods under the coalescent","ec_funded":1,"external_id":{"pmid":["26715666"]},"page":"775 - 786","has_accepted_license":"1","publication":"Genetics","date_created":"2018-12-11T11:52:29Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank Lynsey Bunnefeld for discussions throughout the project and Joshua Schraiber and one anonymous reviewer\r\nfor constructive comments on an earlier version of this manuscript. This work was supported by funding from the\r\nUnited Kingdom Natural Environment Research Council (to K.L.) (NE/I020288/1) and a grant from the European\r\nResearch Council (250152) (to N.H.B.).","project":[{"call_identifier":"FP7","name":"Limits to selection in biology and in evolutionary computation","grant_number":"250152","_id":"25B07788-B435-11E9-9278-68D0E5697425"}],"_id":"1518","type":"journal_article","date_updated":"2025-05-28T11:42:48Z","volume":202,"status":"public","quality_controlled":"1","pubrep_id":"561","date_published":"2016-02-01T00:00:00Z","author":[{"last_name":"Lohse","full_name":"Lohse, Konrad","first_name":"Konrad"},{"first_name":"Martin","full_name":"Chmelik, Martin","id":"3624234E-F248-11E8-B48F-1D18A9856A87","last_name":"Chmelik"},{"first_name":"Simon","full_name":"Martin, Simon","last_name":"Martin"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","orcid":"0000-0002-8548-5240","full_name":"Barton, Nicholas H","first_name":"Nicholas H"}],"scopus_import":"1","language":[{"iso":"eng"}]},{"citation":{"ista":"Berrisford J, Baradaran R, Sazanov LA. 2016. Structure of bacterial respiratory complex I. Biochimica et Biophysica Acta - Bioenergetics. 1857(7), 892–901.","short":"J. Berrisford, R. Baradaran, L.A. Sazanov, Biochimica et Biophysica Acta - Bioenergetics 1857 (2016) 892–901.","mla":"Berrisford, John, et al. “Structure of Bacterial Respiratory Complex I.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1857, no. 7, Elsevier, 2016, pp. 892–901, doi:<a href=\"https://doi.org/10.1016/j.bbabio.2016.01.012\">10.1016/j.bbabio.2016.01.012</a>.","chicago":"Berrisford, John, Rozbeh Baradaran, and Leonid A Sazanov. “Structure of Bacterial Respiratory Complex I.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.bbabio.2016.01.012\">https://doi.org/10.1016/j.bbabio.2016.01.012</a>.","ama":"Berrisford J, Baradaran R, Sazanov LA. Structure of bacterial respiratory complex I. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. 2016;1857(7):892-901. doi:<a href=\"https://doi.org/10.1016/j.bbabio.2016.01.012\">10.1016/j.bbabio.2016.01.012</a>","apa":"Berrisford, J., Baradaran, R., &#38; Sazanov, L. A. (2016). Structure of bacterial respiratory complex I. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bbabio.2016.01.012\">https://doi.org/10.1016/j.bbabio.2016.01.012</a>","ieee":"J. Berrisford, R. Baradaran, and L. A. Sazanov, “Structure of bacterial respiratory complex I,” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1857, no. 7. Elsevier, pp. 892–901, 2016."},"page":"892 - 901","publication":"Biochimica et Biophysica Acta - Bioenergetics","date_created":"2018-12-11T11:52:30Z","publisher":"Elsevier","intvolume":"      1857","doi":"10.1016/j.bbabio.2016.01.012","publist_id":"5654","title":"Structure of bacterial respiratory complex I","year":"2016","publication_status":"published","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"funded by the Medical Research Council (Grant number MC_U105674180)","status":"public","quality_controlled":"1","date_updated":"2021-01-12T06:51:21Z","_id":"1521","type":"journal_article","volume":1857,"oa_version":"None","issue":"7","day":"01","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Complex I (NADH:ubiquinone oxidoreductase) plays a central role in cellular energy production, coupling electron transfer between NADH and quinone to proton translocation. It is the largest protein assembly of respiratory chains and one of the most elaborate redox membrane proteins known. Bacterial enzyme is about half the size of mitochondrial and thus provides its important &quot;minimal&quot; model. Dysfunction of mitochondrial complex I is implicated in many human neurodegenerative diseases. The L-shaped complex consists of a hydrophilic arm, where electron transfer occurs, and a membrane arm, where proton translocation takes place. We have solved the crystal structures of the hydrophilic domain of complex I from Thermus thermophilus, the membrane domain from Escherichia coli and recently of the intact, entire complex I from T. thermophilus (536. kDa, 16 subunits, 9 iron-sulphur clusters, 64 transmembrane helices). The 95. Å long electron transfer pathway through the enzyme proceeds from the primary electron acceptor flavin mononucleotide through seven conserved Fe-S clusters to the unusual elongated quinone-binding site at the interface with the membrane domain. Four putative proton translocation channels are found in the membrane domain, all linked by the central flexible axis containing charged residues. The redox energy of electron transfer is coupled to proton translocation by the as yet undefined mechanism proposed to involve long-range conformational changes. This article is part of a Special Issue entitled Respiratory complex I, edited by Volker Zickermann and Ulrich Brandt."}],"department":[{"_id":"LeSa"}],"date_published":"2016-07-01T00:00:00Z","month":"07","scopus_import":1,"author":[{"full_name":"Berrisford, John","first_name":"John","last_name":"Berrisford"},{"full_name":"Baradaran, Rozbeh","first_name":"Rozbeh","last_name":"Baradaran"},{"first_name":"Leonid A","full_name":"Sazanov, Leonid A","orcid":"0000-0002-0977-7989","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87"}]},{"arxiv":1,"department":[{"_id":"UlWa"}],"month":"01","article_processing_charge":"No","article_type":"original","abstract":[{"text":"We classify smooth Brunnian (i.e., unknotted on both components) embeddings (S2 × S1) ⊔ S3 → ℝ6. Any Brunnian embedding (S2 × S1) ⊔ S3 → ℝ6 is isotopic to an explicitly constructed embedding fk,m,n for some integers k, m, n such that m ≡ n (mod 2). Two embeddings fk,m,n and fk′ ,m′,n′ are isotopic if and only if k = k′, m ≡ m′ (mod 2k) and n ≡ n′ (mod 2k). We use Haefliger’s classification of embeddings S3 ⊔ S3 → ℝ6 in our proof. The relation between the embeddings (S2 × S1) ⊔ S3 → ℝ6 and S3 ⊔ S3 → ℝ6 is not trivial, however. For example, we show that there exist embeddings f: (S2 ×S1) ⊔ S3 → ℝ6 and g, g′ : S3 ⊔ S3 → ℝ6 such that the componentwise embedded connected sum f # g is isotopic to f # g′ but g is not isotopic to g′.","lang":"eng"}],"oa_version":"Preprint","day":"01","issue":"1","publication_identifier":{"eissn":["1609-4514"]},"publist_id":"5652","intvolume":"        16","publisher":"Independent University of Moscow","citation":{"ama":"Avvakumov S. The classification of certain linked 3-manifolds in 6-space. <i>Moscow Mathematical Journal</i>. 2016;16(1):1-25. doi:<a href=\"https://doi.org/10.17323/1609-4514-2016-16-1-1-25\">10.17323/1609-4514-2016-16-1-1-25</a>","chicago":"Avvakumov, Sergey. “The Classification of Certain Linked 3-Manifolds in 6-Space.” <i>Moscow Mathematical Journal</i>. Independent University of Moscow, 2016. <a href=\"https://doi.org/10.17323/1609-4514-2016-16-1-1-25\">https://doi.org/10.17323/1609-4514-2016-16-1-1-25</a>.","mla":"Avvakumov, Sergey. “The Classification of Certain Linked 3-Manifolds in 6-Space.” <i>Moscow Mathematical Journal</i>, vol. 16, no. 1, Independent University of Moscow, 2016, pp. 1–25, doi:<a href=\"https://doi.org/10.17323/1609-4514-2016-16-1-1-25\">10.17323/1609-4514-2016-16-1-1-25</a>.","short":"S. Avvakumov, Moscow Mathematical Journal 16 (2016) 1–25.","ista":"Avvakumov S. 2016. The classification of certain linked 3-manifolds in 6-space. Moscow Mathematical Journal. 16(1), 1–25.","ieee":"S. Avvakumov, “The classification of certain linked 3-manifolds in 6-space,” <i>Moscow Mathematical Journal</i>, vol. 16, no. 1. Independent University of Moscow, pp. 1–25, 2016.","apa":"Avvakumov, S. (2016). The classification of certain linked 3-manifolds in 6-space. <i>Moscow Mathematical Journal</i>. Independent University of Moscow. <a href=\"https://doi.org/10.17323/1609-4514-2016-16-1-1-25\">https://doi.org/10.17323/1609-4514-2016-16-1-1-25</a>"},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1408.3918"}],"publication_status":"published","oa":1,"year":"2016","volume":16,"_id":"1522","type":"journal_article","date_updated":"2022-02-25T10:15:57Z","quality_controlled":"1","status":"public","scopus_import":"1","author":[{"full_name":"Avvakumov, Serhii","first_name":"Serhii","last_name":"Avvakumov","id":"3827DAC8-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2016-01-01T00:00:00Z","language":[{"iso":"eng"}],"title":"The classification of certain linked 3-manifolds in 6-space","doi":"10.17323/1609-4514-2016-16-1-1-25","date_created":"2018-12-11T11:52:30Z","publication":"Moscow Mathematical Journal","external_id":{"arxiv":["1408.3918"]},"page":"1 - 25","acknowledgement":"I thank A. Skopenkov for telling me about the problem and for his useful remarks.  I also thank A. Sossinsky,\r\nA. Zhubr, M. Skopenkov, P. Akhmetiev, and an anonymous referee for their feedback.  Author was partially\r\nsupported by Dobrushin fellowship, 2013, and by RFBR grant 15-01-06302.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"status":"public","quality_controlled":"1","_id":"1523","type":"journal_article","date_updated":"2021-01-12T06:51:22Z","volume":144,"language":[{"iso":"eng"}],"date_published":"2016-04-01T00:00:00Z","author":[{"last_name":"Gundert","full_name":"Gundert, Anna","first_name":"Anna"},{"id":"36690CA2-F248-11E8-B48F-1D18A9856A87","last_name":"Wagner","first_name":"Uli","orcid":"0000-0002-1494-0568","full_name":"Wagner, Uli"}],"scopus_import":1,"page":"1815 - 1828","date_created":"2018-12-11T11:52:30Z","publication":"Proceedings of the American Mathematical Society","doi":"10.1090/proc/12824","title":"On topological minors in random simplicial complexes","acknowledgement":"This research was supported by the Swiss National Science Foundation (SNF Projects 200021-125309 and 200020-138230","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","issue":"4","day":"01","oa_version":"Preprint","abstract":[{"lang":"eng","text":"For random graphs, the containment problem considers the probability that a binomial random graph G(n, p) contains a given graph as a substructure. When asking for the graph as a topological minor, i.e., for a copy of a subdivision of the given graph, it is well known that the (sharp) threshold is at p = 1/n. We consider a natural analogue of this question for higher-dimensional random complexes Xk(n, p), first studied by Cohen, Costa, Farber and Kappeler for k = 2. Improving previous results, we show that p = Θ(1/ √n) is the (coarse) threshold for containing a subdivision of any fixed complete 2-complex. For higher dimensions k &gt; 2, we get that p = O(n−1/k) is an upper bound for the threshold probability of containing a subdivision of a fixed k-dimensional complex."}],"month":"04","department":[{"_id":"UlWa"}],"citation":{"ieee":"A. Gundert and U. Wagner, “On topological minors in random simplicial complexes,” <i>Proceedings of the American Mathematical Society</i>, vol. 144, no. 4. American Mathematical Society, pp. 1815–1828, 2016.","apa":"Gundert, A., &#38; Wagner, U. (2016). On topological minors in random simplicial complexes. <i>Proceedings of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/proc/12824\">https://doi.org/10.1090/proc/12824</a>","short":"A. Gundert, U. Wagner, Proceedings of the American Mathematical Society 144 (2016) 1815–1828.","ista":"Gundert A, Wagner U. 2016. On topological minors in random simplicial complexes. Proceedings of the American Mathematical Society. 144(4), 1815–1828.","chicago":"Gundert, Anna, and Uli Wagner. “On Topological Minors in Random Simplicial Complexes.” <i>Proceedings of the American Mathematical Society</i>. American Mathematical Society, 2016. <a href=\"https://doi.org/10.1090/proc/12824\">https://doi.org/10.1090/proc/12824</a>.","ama":"Gundert A, Wagner U. On topological minors in random simplicial complexes. <i>Proceedings of the American Mathematical Society</i>. 2016;144(4):1815-1828. doi:<a href=\"https://doi.org/10.1090/proc/12824\">10.1090/proc/12824</a>","mla":"Gundert, Anna, and Uli Wagner. “On Topological Minors in Random Simplicial Complexes.” <i>Proceedings of the American Mathematical Society</i>, vol. 144, no. 4, American Mathematical Society, 2016, pp. 1815–28, doi:<a href=\"https://doi.org/10.1090/proc/12824\">10.1090/proc/12824</a>."},"publisher":"American Mathematical Society","intvolume":"       144","publist_id":"5650","year":"2016","oa":1,"publication_status":"published","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1404.2106"}]},{"abstract":[{"text":"When designing genetic circuits, the typical primitives used in major existing modelling formalisms are gene interaction graphs, where edges between genes denote either an activation or inhibition relation. However, when designing experiments, it is important to be precise about the low-level mechanistic details as to how each such relation is implemented. The rule-based modelling language Kappa allows to unambiguously specify mechanistic details such as DNA binding sites, dimerisation of transcription factors, or co-operative interactions. Such a detailed description comes with complexity and computationally costly executions. We propose a general method for automatically transforming a rule-based program, by eliminating intermediate species and adjusting the rate constants accordingly. To the best of our knowledge, we show the first automated reduction of rule-based models based on equilibrium approximations.\r\nOur algorithm is an adaptation of an existing algorithm, which was designed for reducing reaction-based programs; our version of the algorithm scans the rule-based Kappa model in search for those interaction patterns known to be amenable to equilibrium approximations (e.g. Michaelis-Menten scheme). Additional checks are then performed in order to verify if the reduction is meaningful in the context of the full model. The reduced model is efficiently obtained by static inspection over the rule-set. The tool is tested on a detailed rule-based model of a λ-phage switch, which lists 92 rules and 13 agents. The reduced model has 11 rules and 5 agents, and provides a dramatic reduction in simulation time of several orders of magnitude.","lang":"eng"}],"day":"10","oa_version":"Preprint","month":"01","department":[{"_id":"CaGu"},{"_id":"ToHe"}],"publisher":"Springer","citation":{"apa":"Beica, A., Guet, C. C., &#38; Petrov, T. (2016). Efficient reduction of kappa models by static inspection of the rule-set (Vol. 9271, pp. 173–191). Presented at the HSB: Hybrid Systems Biology, Madrid, Spain: Springer. <a href=\"https://doi.org/10.1007/978-3-319-26916-0_10\">https://doi.org/10.1007/978-3-319-26916-0_10</a>","ieee":"A. Beica, C. C. Guet, and T. Petrov, “Efficient reduction of kappa models by static inspection of the rule-set,” presented at the HSB: Hybrid Systems Biology, Madrid, Spain, 2016, vol. 9271, pp. 173–191.","mla":"Beica, Andreea, et al. <i>Efficient Reduction of Kappa Models by Static Inspection of the Rule-Set</i>. Vol. 9271, Springer, 2016, pp. 173–91, doi:<a href=\"https://doi.org/10.1007/978-3-319-26916-0_10\">10.1007/978-3-319-26916-0_10</a>.","ama":"Beica A, Guet CC, Petrov T. Efficient reduction of kappa models by static inspection of the rule-set. In: Vol 9271. Springer; 2016:173-191. doi:<a href=\"https://doi.org/10.1007/978-3-319-26916-0_10\">10.1007/978-3-319-26916-0_10</a>","chicago":"Beica, Andreea, Calin C Guet, and Tatjana Petrov. “Efficient Reduction of Kappa Models by Static Inspection of the Rule-Set,” 9271:173–91. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-319-26916-0_10\">https://doi.org/10.1007/978-3-319-26916-0_10</a>.","ista":"Beica A, Guet CC, Petrov T. 2016. Efficient reduction of kappa models by static inspection of the rule-set. HSB: Hybrid Systems Biology, LNCS, vol. 9271, 173–191.","short":"A. Beica, C.C. Guet, T. Petrov, in:, Springer, 2016, pp. 173–191."},"publist_id":"5649","intvolume":"      9271","publication_status":"published","oa":1,"year":"2016","alternative_title":["LNCS"],"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1501.00440"}],"quality_controlled":"1","status":"public","volume":9271,"_id":"1524","date_updated":"2021-01-12T06:51:22Z","type":"conference","language":[{"iso":"eng"}],"conference":{"start_date":"2015-09-04","location":"Madrid, Spain","end_date":"2015-09-05","name":"HSB: Hybrid Systems Biology"},"author":[{"last_name":"Beica","full_name":"Beica, Andreea","first_name":"Andreea"},{"last_name":"Guet","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","full_name":"Guet, Calin C","orcid":"0000-0001-6220-2052","first_name":"Calin C"},{"full_name":"Petrov, Tatjana","orcid":"0000-0002-9041-0905","first_name":"Tatjana","last_name":"Petrov","id":"3D5811FC-F248-11E8-B48F-1D18A9856A87"}],"scopus_import":1,"date_published":"2016-01-10T00:00:00Z","date_created":"2018-12-11T11:52:31Z","page":"173 - 191","ec_funded":1,"title":"Efficient reduction of kappa models by static inspection of the rule-set","doi":"10.1007/978-3-319-26916-0_10","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"291734","name":"International IST Postdoc Fellowship Programme"}],"acknowledgement":"This research was supported by the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement no. 291734, and the SNSF Early Postdoc.Mobility Fellowship, the grant number P2EZP2_148797.","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87"},{"ec_funded":1,"title":"Lipschitz robustness of timed I/O systems","doi":"10.1007/978-3-662-49122-5_12","date_created":"2018-12-11T11:52:32Z","page":"250 - 267","project":[{"call_identifier":"FP7","grant_number":"267989","name":"Quantitative Reactive Modeling","_id":"25EE3708-B435-11E9-9278-68D0E5697425"},{"name":"The Wittgenstein Prize","grant_number":"Z211","call_identifier":"FWF","_id":"25F42A32-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This research was supported in part by the European Research Council (ERC) under grant 267989 (QUAREM), by the Austrian Science Fund (FWF) under grants S11402-N23 (RiSE) and Z211-N23 (Wittgenstein Award), and by the National Science Centre (NCN), Poland under grant 2014/15/D/ST6/04543.","volume":9583,"_id":"1526","type":"conference","date_updated":"2021-01-12T06:51:23Z","quality_controlled":"1","status":"public","scopus_import":1,"author":[{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","orcid":"0000−0002−2985−7724","full_name":"Henzinger, Thomas A","first_name":"Thomas A"},{"last_name":"Otop","id":"2FC5DA74-F248-11E8-B48F-1D18A9856A87","full_name":"Otop, Jan","first_name":"Jan"},{"last_name":"Samanta","id":"3D2AAC08-F248-11E8-B48F-1D18A9856A87","first_name":"Roopsha","full_name":"Samanta, Roopsha"}],"date_published":"2016-01-01T00:00:00Z","language":[{"iso":"eng"}],"conference":{"location":"St. Petersburg, FL, USA","start_date":"2016-01-17","name":"VMCAI: Verification, Model Checking and Abstract Interpretation","end_date":"2016-01-19"},"publist_id":"5647","intvolume":"      9583","publisher":"Springer","citation":{"mla":"Henzinger, Thomas A., et al. <i>Lipschitz Robustness of Timed I/O Systems</i>. Vol. 9583, Springer, 2016, pp. 250–67, doi:<a href=\"https://doi.org/10.1007/978-3-662-49122-5_12\">10.1007/978-3-662-49122-5_12</a>.","chicago":"Henzinger, Thomas A, Jan Otop, and Roopsha Samanta. “Lipschitz Robustness of Timed I/O Systems,” 9583:250–67. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-662-49122-5_12\">https://doi.org/10.1007/978-3-662-49122-5_12</a>.","ama":"Henzinger TA, Otop J, Samanta R. Lipschitz robustness of timed I/O systems. In: Vol 9583. Springer; 2016:250-267. doi:<a href=\"https://doi.org/10.1007/978-3-662-49122-5_12\">10.1007/978-3-662-49122-5_12</a>","ista":"Henzinger TA, Otop J, Samanta R. 2016. Lipschitz robustness of timed I/O systems. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 9583, 250–267.","short":"T.A. Henzinger, J. Otop, R. Samanta, in:, Springer, 2016, pp. 250–267.","apa":"Henzinger, T. A., Otop, J., &#38; Samanta, R. (2016). Lipschitz robustness of timed I/O systems (Vol. 9583, pp. 250–267). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, St. Petersburg, FL, USA: Springer. <a href=\"https://doi.org/10.1007/978-3-662-49122-5_12\">https://doi.org/10.1007/978-3-662-49122-5_12</a>","ieee":"T. A. Henzinger, J. Otop, and R. Samanta, “Lipschitz robustness of timed I/O systems,” presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, St. Petersburg, FL, USA, 2016, vol. 9583, pp. 250–267."},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1506.01233"}],"alternative_title":["LNCS"],"publication_status":"published","oa":1,"year":"2016","month":"01","department":[{"_id":"ToHe"}],"abstract":[{"lang":"eng","text":"We present the first study of robustness of systems that are both timed as well as reactive (I/O). We study the behavior of such timed I/O systems in the presence of uncertain inputs and formalize their robustness using the analytic notion of Lipschitz continuity: a timed I/O system is K-(Lipschitz) robust if the perturbation in its output is at most K times the perturbation in its input. We quantify input and output perturbation using similarity functions over timed words such as the timed version of the Manhattan distance and the Skorokhod distance. We consider two models of timed I/O systems — timed transducers and asynchronous sequential circuits. We show that K-robustness of timed transducers can be decided in polynomial space under certain conditions. For asynchronous sequential circuits, we reduce K-robustness w.r.t. timed Manhattan distances to K-robustness of discrete letter-to-letter transducers and show PSpace-completeness of the problem."}],"oa_version":"Preprint","day":"01"},{"arxiv":1,"article_processing_charge":"No","department":[{"_id":"KrCh"}],"month":"05","abstract":[{"text":"We consider partially observable Markov decision processes (POMDPs) with a set of target states and an integer cost associated with every transition. The optimization objective we study asks to minimize the expected total cost of reaching a state in the target set, while ensuring that the target set is reached almost surely (with probability 1). We show that for integer costs approximating the optimal cost is undecidable. For positive costs, our results are as follows: (i) we establish matching lower and upper bounds for the optimal cost, both double exponential in the POMDP state space size; (ii) we show that the problem of approximating the optimal cost is decidable and present approximation algorithms developing on the existing algorithms for POMDPs with finite-horizon objectives. While the worst-case running time of our algorithm is double exponential, we also present efficient stopping criteria for the algorithm and show experimentally that it performs well in many examples of interest.","lang":"eng"}],"related_material":{"record":[{"id":"1820","relation":"earlier_version","status":"public"},{"status":"public","relation":"earlier_version","id":"5425"}]},"day":"01","oa_version":"Preprint","main_file_link":[{"url":"http://arxiv.org/abs/1411.3880","open_access":"1"}],"oa":1,"publication_status":"published","year":"2016","publist_id":"5642","intvolume":"       234","publisher":"Elsevier","citation":{"ista":"Chatterjee K, Chmelik M, Gupta R, Kanodia A. 2016. Optimal cost almost-sure reachability in POMDPs. Artificial Intelligence. 234, 26–48.","short":"K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, Artificial Intelligence 234 (2016) 26–48.","mla":"Chatterjee, Krishnendu, et al. “Optimal Cost Almost-Sure Reachability in POMDPs.” <i>Artificial Intelligence</i>, vol. 234, Elsevier, 2016, pp. 26–48, doi:<a href=\"https://doi.org/10.1016/j.artint.2016.01.007\">10.1016/j.artint.2016.01.007</a>.","chicago":"Chatterjee, Krishnendu, Martin Chmelik, Raghav Gupta, and Ayush Kanodia. “Optimal Cost Almost-Sure Reachability in POMDPs.” <i>Artificial Intelligence</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.artint.2016.01.007\">https://doi.org/10.1016/j.artint.2016.01.007</a>.","ama":"Chatterjee K, Chmelik M, Gupta R, Kanodia A. Optimal cost almost-sure reachability in POMDPs. <i>Artificial Intelligence</i>. 2016;234:26-48. doi:<a href=\"https://doi.org/10.1016/j.artint.2016.01.007\">10.1016/j.artint.2016.01.007</a>","apa":"Chatterjee, K., Chmelik, M., Gupta, R., &#38; Kanodia, A. (2016). Optimal cost almost-sure reachability in POMDPs. <i>Artificial Intelligence</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.artint.2016.01.007\">https://doi.org/10.1016/j.artint.2016.01.007</a>","ieee":"K. Chatterjee, M. Chmelik, R. Gupta, and A. Kanodia, “Optimal cost almost-sure reachability in POMDPs,” <i>Artificial Intelligence</i>, vol. 234. Elsevier, pp. 26–48, 2016."},"author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu"},{"first_name":"Martin","full_name":"Chmelik, Martin","last_name":"Chmelik","id":"3624234E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Gupta, Raghav","first_name":"Raghav","last_name":"Gupta"},{"full_name":"Kanodia, Ayush","first_name":"Ayush","last_name":"Kanodia"}],"scopus_import":1,"date_published":"2016-05-01T00:00:00Z","language":[{"iso":"eng"}],"volume":234,"date_updated":"2023-02-23T12:25:49Z","_id":"1529","type":"journal_article","quality_controlled":"1","status":"public","project":[{"_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","call_identifier":"FWF"},{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23"},{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank Blai Bonet for helping us with RTDP-Bel. The research was partly supported by Austrian Science Fund (FWF) Grant No P23499-N23, FWF NFN Grant No S11407-N23 (RiSE), ERC Start grant (279307: Graph Games), and Microsoft faculty fellows award.","title":"Optimal cost almost-sure reachability in POMDPs","ec_funded":1,"doi":"10.1016/j.artint.2016.01.007","date_created":"2018-12-11T11:52:33Z","publication":"Artificial Intelligence","external_id":{"arxiv":["1411.3880"]},"page":"26 - 48"},{"date_published":"2016-06-01T00:00:00Z","scopus_import":1,"author":[{"id":"404092F4-F248-11E8-B48F-1D18A9856A87","last_name":"Nam","full_name":"Nam, Phan","first_name":"Phan"},{"first_name":"Marcin M","full_name":"Napiórkowski, Marcin M","id":"4197AD04-F248-11E8-B48F-1D18A9856A87","last_name":"Napiórkowski"},{"first_name":"Jan","full_name":"Solovej, Jan","last_name":"Solovej"}],"language":[{"iso":"eng"}],"type":"journal_article","_id":"1545","date_updated":"2021-01-12T06:51:30Z","volume":270,"status":"public","quality_controlled":"1","acknowledgement":"We thank Jan Dereziński for several inspiring discussions and useful remarks. We thank the referee for helpful comments. J.P.S. thanks the Erwin Schrödinger Institute for the hospitality during the thematic programme “Quantum many-body systems, random matrices, and disorder”. We gratefully acknowledge the financial supports by the European Union's Seventh Framework Programme under the ERC Advanced Grant ERC-2012-AdG 321029 (J.P.S.) and the REA grant agreement No. 291734 (P.T.N.), as well as the support of the National Science Center (NCN) grant No. 2012/07/N/ST1/03185 and the Austrian Science Fund (FWF) project No. P 27533-N27 (M.N.).","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"},{"call_identifier":"FWF","grant_number":"P27533_N27","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","_id":"25C878CE-B435-11E9-9278-68D0E5697425"}],"doi":"10.1016/j.jfa.2015.12.007","ec_funded":1,"title":"Diagonalization of bosonic quadratic Hamiltonians by Bogoliubov transformations","page":"4340 - 4368","date_created":"2018-12-11T11:52:38Z","publication":"Journal of Functional Analysis","month":"06","department":[{"_id":"RoSe"}],"oa_version":"Submitted Version","day":"01","issue":"11","abstract":[{"text":"We provide general conditions for which bosonic quadratic Hamiltonians on Fock spaces can be diagonalized by Bogoliubov transformations. Our results cover the case when quantum systems have infinite degrees of freedom and the associated one-body kinetic and paring operators are unbounded. Our sufficient conditions are optimal in the sense that they become necessary when the relevant one-body operators commute.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1508.07321"}],"year":"2016","publication_status":"published","oa":1,"intvolume":"       270","publist_id":"5626","citation":{"ieee":"P. Nam, M. M. Napiórkowski, and J. Solovej, “Diagonalization of bosonic quadratic Hamiltonians by Bogoliubov transformations,” <i>Journal of Functional Analysis</i>, vol. 270, no. 11. Academic Press, pp. 4340–4368, 2016.","apa":"Nam, P., Napiórkowski, M. M., &#38; Solovej, J. (2016). Diagonalization of bosonic quadratic Hamiltonians by Bogoliubov transformations. <i>Journal of Functional Analysis</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jfa.2015.12.007\">https://doi.org/10.1016/j.jfa.2015.12.007</a>","short":"P. Nam, M.M. Napiórkowski, J. Solovej, Journal of Functional Analysis 270 (2016) 4340–4368.","ista":"Nam P, Napiórkowski MM, Solovej J. 2016. Diagonalization of bosonic quadratic Hamiltonians by Bogoliubov transformations. Journal of Functional Analysis. 270(11), 4340–4368.","chicago":"Nam, Phan, Marcin M Napiórkowski, and Jan Solovej. “Diagonalization of Bosonic Quadratic Hamiltonians by Bogoliubov Transformations.” <i>Journal of Functional Analysis</i>. Academic Press, 2016. <a href=\"https://doi.org/10.1016/j.jfa.2015.12.007\">https://doi.org/10.1016/j.jfa.2015.12.007</a>.","ama":"Nam P, Napiórkowski MM, Solovej J. Diagonalization of bosonic quadratic Hamiltonians by Bogoliubov transformations. <i>Journal of Functional Analysis</i>. 2016;270(11):4340-4368. doi:<a href=\"https://doi.org/10.1016/j.jfa.2015.12.007\">10.1016/j.jfa.2015.12.007</a>","mla":"Nam, Phan, et al. “Diagonalization of Bosonic Quadratic Hamiltonians by Bogoliubov Transformations.” <i>Journal of Functional Analysis</i>, vol. 270, no. 11, Academic Press, 2016, pp. 4340–68, doi:<a href=\"https://doi.org/10.1016/j.jfa.2015.12.007\">10.1016/j.jfa.2015.12.007</a>."},"publisher":"Academic Press"},{"publication_status":"published","oa":1,"year":"2016","ddc":["570"],"publisher":"Royal Society, The","file":[{"date_created":"2018-12-12T10:11:43Z","file_size":626804,"file_name":"IST-2016-488-v1+1_20152452.full.pdf","date_updated":"2020-07-14T12:45:02Z","content_type":"application/pdf","relation":"main_file","checksum":"78ffe70c1c88af3856d31ca6b7195a27","creator":"system","access_level":"open_access","file_id":"4899"}],"citation":{"ama":"Qi Q, Toll Riera M, Heilbron K, Preston G, Maclean RC. The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. 2016;283(1822). doi:<a href=\"https://doi.org/10.1098/rspb.2015.2452\">10.1098/rspb.2015.2452</a>","chicago":"Qi, Qin, Macarena Toll Riera, Karl Heilbron, Gail Preston, and R Craig Maclean. “The Genomic Basis of Adaptation to the Fitness Cost of Rifampicin Resistance in Pseudomonas Aeruginosa.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society, The, 2016. <a href=\"https://doi.org/10.1098/rspb.2015.2452\">https://doi.org/10.1098/rspb.2015.2452</a>.","mla":"Qi, Qin, et al. “The Genomic Basis of Adaptation to the Fitness Cost of Rifampicin Resistance in Pseudomonas Aeruginosa.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 283, no. 1822, 20152452, Royal Society, The, 2016, doi:<a href=\"https://doi.org/10.1098/rspb.2015.2452\">10.1098/rspb.2015.2452</a>.","short":"Q. Qi, M. Toll Riera, K. Heilbron, G. Preston, R.C. Maclean, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).","ista":"Qi Q, Toll Riera M, Heilbron K, Preston G, Maclean RC. 2016. The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa. Proceedings of the Royal Society of London Series B Biological Sciences. 283(1822), 20152452.","ieee":"Q. Qi, M. Toll Riera, K. Heilbron, G. Preston, and R. C. Maclean, “The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa,” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 283, no. 1822. Royal Society, The, 2016.","apa":"Qi, Q., Toll Riera, M., Heilbron, K., Preston, G., &#38; Maclean, R. C. (2016). The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society, The. <a href=\"https://doi.org/10.1098/rspb.2015.2452\">https://doi.org/10.1098/rspb.2015.2452</a>"},"publist_id":"5619","intvolume":"       283","abstract":[{"lang":"eng","text":"Antibiotic resistance carries a fitness cost that must be overcome in order for resistance to persist over the long term. Compensatory mutations that recover the functional defects associated with resistance mutations have been argued to play a key role in overcoming the cost of resistance, but compensatory mutations are expected to be rare relative to generally beneficial mutations that increase fitness, irrespective of antibiotic resistance. Given this asymmetry, population genetics theory predicts that populations should adapt by compensatory mutations when the cost of resistance is large, whereas generally beneficial mutations should drive adaptation when the cost of resistance is small. We tested this prediction by determining the genomic mechanisms underpinning adaptation to antibiotic-free conditions in populations of the pathogenic bacterium Pseudomonas aeruginosa that carry costly antibiotic resistance mutations. Whole-genome sequencing revealed that populations founded by high-cost rifampicin-resistant mutants adapted via compensatory mutations in three genes of the RNA polymerase core enzyme, whereas populations founded by low-cost mutants adapted by generally beneficial mutations, predominantly in the quorum-sensing transcriptional regulator gene lasR. Even though the importance of compensatory evolution in maintaining resistance has been widely recognized, our study shows that the roles of general adaptation in maintaining resistance should not be underestimated and highlights the need to understand how selection at other sites in the genome influences the dynamics of resistance alleles in clinical settings."}],"oa_version":"Published Version","day":"13","issue":"1822","month":"01","department":[{"_id":"ToBo"}],"file_date_updated":"2020-07-14T12:45:02Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank the High-Throughput Genomics Group at the Wellcome Trust Centre for Human Genetics funded by Wellcome\r\nTrust grant reference 090532/Z/09/Z and Medical Research Council Hub grant no. G0900747 91070 for generation of the high-throughput sequencing data. We thank Wook Kim and two anonymous reviewers for their constructive feedback on previous versions of our manuscript.","date_created":"2018-12-11T11:52:40Z","publication":"Proceedings of the Royal Society of London Series B Biological Sciences","has_accepted_license":"1","article_number":"20152452","title":"The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa","doi":"10.1098/rspb.2015.2452","language":[{"iso":"eng"}],"scopus_import":1,"author":[{"last_name":"Qi","id":"3B22D412-F248-11E8-B48F-1D18A9856A87","full_name":"Qi, Qin","orcid":"0000-0002-6148-2416","first_name":"Qin"},{"last_name":"Toll Riera","full_name":"Toll Riera, Macarena","first_name":"Macarena"},{"last_name":"Heilbron","full_name":"Heilbron, Karl","first_name":"Karl"},{"last_name":"Preston","full_name":"Preston, Gail","first_name":"Gail"},{"first_name":"R Craig","full_name":"Maclean, R Craig","last_name":"Maclean"}],"date_published":"2016-01-13T00:00:00Z","pubrep_id":"488","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"status":"public","volume":283,"date_updated":"2021-01-12T06:51:33Z","_id":"1552","type":"journal_article"},{"doi":"10.1007/s00145-014-9196-7","intvolume":"        29","publist_id":"5579","title":"Structure preserving signatures and commitments to group elements","page":"363 - 421","citation":{"short":"M. Abe, G. Fuchsbauer, J. Groth, K. Haralambiev, M. Ohkubo, Journal of Cryptology 29 (2016) 363–421.","ista":"Abe M, Fuchsbauer G, Groth J, Haralambiev K, Ohkubo M. 2016. Structure preserving signatures and commitments to group elements. Journal of Cryptology. 29(2), 363–421.","ama":"Abe M, Fuchsbauer G, Groth J, Haralambiev K, Ohkubo M. Structure preserving signatures and commitments to group elements. <i>Journal of Cryptology</i>. 2016;29(2):363-421. doi:<a href=\"https://doi.org/10.1007/s00145-014-9196-7\">10.1007/s00145-014-9196-7</a>","chicago":"Abe, Masayuki, Georg Fuchsbauer, Jens Groth, Kristiyan Haralambiev, and Miyako Ohkubo. “Structure Preserving Signatures and Commitments to Group Elements.” <i>Journal of Cryptology</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00145-014-9196-7\">https://doi.org/10.1007/s00145-014-9196-7</a>.","mla":"Abe, Masayuki, et al. “Structure Preserving Signatures and Commitments to Group Elements.” <i>Journal of Cryptology</i>, vol. 29, no. 2, Springer, 2016, pp. 363–421, doi:<a href=\"https://doi.org/10.1007/s00145-014-9196-7\">10.1007/s00145-014-9196-7</a>.","ieee":"M. Abe, G. Fuchsbauer, J. Groth, K. Haralambiev, and M. Ohkubo, “Structure preserving signatures and commitments to group elements,” <i>Journal of Cryptology</i>, vol. 29, no. 2. Springer, pp. 363–421, 2016.","apa":"Abe, M., Fuchsbauer, G., Groth, J., Haralambiev, K., &#38; Ohkubo, M. (2016). Structure preserving signatures and commitments to group elements. <i>Journal of Cryptology</i>. Springer. <a href=\"https://doi.org/10.1007/s00145-014-9196-7\">https://doi.org/10.1007/s00145-014-9196-7</a>"},"publisher":"Springer","date_created":"2018-12-11T11:52:54Z","publication":"Journal of Cryptology","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The authors would like to thank the anonymous reviewers of this paper. We also would like to express our appreciation to the program committee and the anonymous reviewers for CRYPTO 2010. The first author thanks Sherman S. M. Chow for his comment on group signatures in Sect. 7.1.","year":"2016","publication_status":"published","type":"journal_article","_id":"1592","date_updated":"2021-01-12T06:51:49Z","volume":29,"status":"public","quality_controlled":"1","date_published":"2016-04-01T00:00:00Z","month":"04","department":[{"_id":"KrPi"}],"author":[{"last_name":"Abe","full_name":"Abe, Masayuki","first_name":"Masayuki"},{"full_name":"Fuchsbauer, Georg","first_name":"Georg","last_name":"Fuchsbauer","id":"46B4C3EE-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Groth, Jens","first_name":"Jens","last_name":"Groth"},{"first_name":"Kristiyan","full_name":"Haralambiev, Kristiyan","last_name":"Haralambiev"},{"first_name":"Miyako","full_name":"Ohkubo, Miyako","last_name":"Ohkubo"}],"scopus_import":1,"issue":"2","day":"01","oa_version":"None","abstract":[{"text":"A modular approach to constructing cryptographic protocols leads to simple designs but often inefficient instantiations. On the other hand, ad hoc constructions may yield efficient protocols at the cost of losing conceptual simplicity. We suggest a new design paradigm, structure-preserving cryptography, that provides a way to construct modular protocols with reasonable efficiency while retaining conceptual simplicity. A cryptographic scheme over a bilinear group is called structure-preserving if its public inputs and outputs consist of elements from the bilinear groups and their consistency can be verified by evaluating pairing-product equations. As structure-preserving schemes smoothly interoperate with each other, they are useful as building blocks in modular design of cryptographic applications. This paper introduces structure-preserving commitment and signature schemes over bilinear groups with several desirable properties. The commitment schemes include homomorphic, trapdoor and length-reducing commitments to group elements, and the structure-preserving signature schemes are the first ones that yield constant-size signatures on multiple group elements. A structure-preserving signature scheme is called automorphic if the public keys lie in the message space, which cannot be achieved by compressing inputs via a cryptographic hash function, as this would destroy the mathematical structure we are trying to preserve. Automorphic signatures can be used for building certification chains underlying privacy-preserving protocols. Among a vast number of applications of structure-preserving protocols, we present an efficient round-optimal blind-signature scheme and a group signature scheme with an efficient and concurrently secure protocol for enrolling new members.","lang":"eng"}],"language":[{"iso":"eng"}]},{"ec_funded":1,"title":"Quantitative analysis of dendritic cell haptotaxis","doi":"10.1016/bs.mie.2015.11.004","publication":"Methods in Enzymology","date_created":"2018-12-11T11:52:56Z","page":"567 - 581","external_id":{"pmid":["26921962"]},"project":[{"call_identifier":"FP7","grant_number":"281556","name":"Cytoskeletal force generation and force transduction of migrating leukocytes (EU)","_id":"25A603A2-B435-11E9-9278-68D0E5697425"},{"name":"Cytoskeletal force generation and transduction of leukocytes (FWF)","grant_number":"Y 564-B12","call_identifier":"FWF","_id":"25A8E5EA-B435-11E9-9278-68D0E5697425"}],"acknowledgement":"This work was supported by the Boehringer Ingelheim Fonds, the European Research Council (ERC StG 281556), and a START Award of the Austrian Science Foundation (FWF). We thank Robert Hauschild, Anne Reversat, and Jack Merrin for valuable input and the Imaging Facility of IST Austria for excellent support.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":570,"date_updated":"2021-01-12T06:51:51Z","_id":"1597","type":"journal_article","quality_controlled":"1","status":"public","scopus_import":1,"author":[{"last_name":"Schwarz","id":"346C1EC6-F248-11E8-B48F-1D18A9856A87","full_name":"Schwarz, Jan","first_name":"Jan"},{"orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","last_name":"Sixt"}],"date_published":"2016-01-01T00:00:00Z","language":[{"iso":"eng"}],"publist_id":"5573","intvolume":"       570","publisher":"Elsevier","citation":{"apa":"Schwarz, J., &#38; Sixt, M. K. (2016). Quantitative analysis of dendritic cell haptotaxis. <i>Methods in Enzymology</i>. Elsevier. <a href=\"https://doi.org/10.1016/bs.mie.2015.11.004\">https://doi.org/10.1016/bs.mie.2015.11.004</a>","ieee":"J. Schwarz and M. K. Sixt, “Quantitative analysis of dendritic cell haptotaxis,” <i>Methods in Enzymology</i>, vol. 570. Elsevier, pp. 567–581, 2016.","mla":"Schwarz, Jan, and Michael K. Sixt. “Quantitative Analysis of Dendritic Cell Haptotaxis.” <i>Methods in Enzymology</i>, vol. 570, Elsevier, 2016, pp. 567–81, doi:<a href=\"https://doi.org/10.1016/bs.mie.2015.11.004\">10.1016/bs.mie.2015.11.004</a>.","chicago":"Schwarz, Jan, and Michael K Sixt. “Quantitative Analysis of Dendritic Cell Haptotaxis.” <i>Methods in Enzymology</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/bs.mie.2015.11.004\">https://doi.org/10.1016/bs.mie.2015.11.004</a>.","ama":"Schwarz J, Sixt MK. Quantitative analysis of dendritic cell haptotaxis. <i>Methods in Enzymology</i>. 2016;570:567-581. doi:<a href=\"https://doi.org/10.1016/bs.mie.2015.11.004\">10.1016/bs.mie.2015.11.004</a>","ista":"Schwarz J, Sixt MK. 2016. Quantitative analysis of dendritic cell haptotaxis. Methods in Enzymology. 570, 567–581.","short":"J. Schwarz, M.K. Sixt, Methods in Enzymology 570 (2016) 567–581."},"publication_status":"published","year":"2016","acknowledged_ssus":[{"_id":"Bio"}],"pmid":1,"department":[{"_id":"MiSi"}],"month":"01","article_processing_charge":"No","article_type":"original","abstract":[{"lang":"eng","text":"Chemokines are the main guidance cues directing leukocyte migration. Opposed to early assumptions, chemokines do not necessarily act as soluble cues but are often immobilized within tissues, e.g., dendritic cell migration toward lymphatic vessels is guided by a haptotactic gradient of the chemokine CCL21. Controlled assay systems to quantitatively study haptotaxis in vitro are still missing. In this chapter, we describe an in vitro haptotaxis assay optimized for the unique properties of dendritic cells. The chemokine CCL21 is immobilized in a bioactive state, using laser-assisted protein adsorption by photobleaching. The cells follow this immobilized CCL21 gradient in a haptotaxis chamber, which provides three dimensionally confined migration conditions."}],"oa_version":"None","day":"01"},{"_id":"1599","type":"journal_article","date_updated":"2021-01-12T06:51:52Z","volume":351,"status":"public","quality_controlled":"1","date_published":"2016-01-08T00:00:00Z","scopus_import":1,"author":[{"id":"3EB04B78-F248-11E8-B48F-1D18A9856A87","last_name":"Kiermaier","first_name":"Eva","orcid":"0000-0001-6165-5738","full_name":"Kiermaier, Eva"},{"id":"3356F664-F248-11E8-B48F-1D18A9856A87","last_name":"Moussion","full_name":"Moussion, Christine","first_name":"Christine"},{"last_name":"Veldkamp","first_name":"Christopher","full_name":"Veldkamp, Christopher"},{"first_name":"Rita","full_name":"Gerardy  Schahn, Rita","last_name":"Gerardy  Schahn"},{"id":"4C7D837E-F248-11E8-B48F-1D18A9856A87","last_name":"De Vries","full_name":"De Vries, Ingrid","first_name":"Ingrid"},{"first_name":"Larry","full_name":"Williams, Larry","last_name":"Williams"},{"full_name":"Chaffee, Gary","first_name":"Gary","last_name":"Chaffee"},{"full_name":"Phillips, Andrew","first_name":"Andrew","last_name":"Phillips"},{"last_name":"Freiberger","first_name":"Friedrich","full_name":"Freiberger, Friedrich"},{"full_name":"Imre, Richard","first_name":"Richard","last_name":"Imre"},{"full_name":"Taleski, Deni","first_name":"Deni","last_name":"Taleski"},{"first_name":"Richard","full_name":"Payne, Richard","last_name":"Payne"},{"full_name":"Braun, Asolina","first_name":"Asolina","last_name":"Braun"},{"full_name":"Förster, Reinhold","first_name":"Reinhold","last_name":"Förster"},{"first_name":"Karl","full_name":"Mechtler, Karl","last_name":"Mechtler"},{"last_name":"Mühlenhoff","full_name":"Mühlenhoff, Martina","first_name":"Martina"},{"first_name":"Brian","full_name":"Volkman, Brian","last_name":"Volkman"},{"full_name":"Sixt, Michael K","orcid":"0000-0002-6620-9179","first_name":"Michael K","last_name":"Sixt","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87"}],"language":[{"iso":"eng"}],"doi":"10.1126/science.aad0512","ec_funded":1,"title":"Polysialylation controls dendritic cell trafficking by regulating chemokine recognition","page":"186 - 190","external_id":{"pmid":["26657283"]},"publication":"Science","date_created":"2018-12-11T11:52:57Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank S. Schüchner and E. Ogris for kindly providing the antibody to GFP, M. Helmbrecht and A. Huber for providing Nrp2−/− mice, the IST Scientific Support Facilities for excellent services, and J. Renkawitz and K. Vaahtomeri for critically reading the manuscript. ","project":[{"_id":"25A603A2-B435-11E9-9278-68D0E5697425","name":"Cytoskeletal force generation and force transduction of migrating leukocytes (EU)","grant_number":"281556","call_identifier":"FP7"},{"_id":"25A76F58-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"289720","name":"Stromal Cell-immune Cell Interactions in Health and Disease"},{"_id":"25A8E5EA-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"Y 564-B12","name":"Cytoskeletal force generation and transduction of leukocytes (FWF)"}],"acknowledged_ssus":[{"_id":"SSU"}],"pmid":1,"department":[{"_id":"MiSi"}],"month":"01","article_processing_charge":"No","oa_version":"Submitted Version","day":"08","issue":"6269","article_type":"original","abstract":[{"text":"The addition of polysialic acid to N- and/or O-linked glycans, referred to as polysialylation, is a rare posttranslational modification that is mainly known to control the developmental plasticity of the nervous system. Here we show that CCR7, the central chemokine receptor controlling immune cell trafficking to secondary lymphatic organs, carries polysialic acid. This modification is essential for the recognition of the CCR7 ligand CCL21. As a consequence, dendritic cell trafficking is abrogated in polysialyltransferase-deficient mice, manifesting as disturbed lymph node homeostasis and unresponsiveness to inflammatory stimuli. Structure-function analysis of chemokine-receptor interactions reveals that CCL21 adopts an autoinhibited conformation, which is released upon interaction with polysialic acid. Thus, we describe a glycosylation-mediated immune cell trafficking disorder and its mechanistic basis.\r\n","lang":"eng"}],"intvolume":"       351","publist_id":"5570","citation":{"ama":"Kiermaier E, Moussion C, Veldkamp C, et al. Polysialylation controls dendritic cell trafficking by regulating chemokine recognition. <i>Science</i>. 2016;351(6269):186-190. doi:<a href=\"https://doi.org/10.1126/science.aad0512\">10.1126/science.aad0512</a>","chicago":"Kiermaier, Eva, Christine Moussion, Christopher Veldkamp, Rita Gerardy  Schahn, Ingrid de Vries, Larry Williams, Gary Chaffee, et al. “Polysialylation Controls Dendritic Cell Trafficking by Regulating Chemokine Recognition.” <i>Science</i>. American Association for the Advancement of Science, 2016. <a href=\"https://doi.org/10.1126/science.aad0512\">https://doi.org/10.1126/science.aad0512</a>.","mla":"Kiermaier, Eva, et al. “Polysialylation Controls Dendritic Cell Trafficking by Regulating Chemokine Recognition.” <i>Science</i>, vol. 351, no. 6269, American Association for the Advancement of Science, 2016, pp. 186–90, doi:<a href=\"https://doi.org/10.1126/science.aad0512\">10.1126/science.aad0512</a>.","short":"E. Kiermaier, C. Moussion, C. Veldkamp, R. Gerardy  Schahn, I. de Vries, L. Williams, G. Chaffee, A. Phillips, F. Freiberger, R. Imre, D. Taleski, R. Payne, A. Braun, R. Förster, K. Mechtler, M. Mühlenhoff, B. Volkman, M.K. Sixt, Science 351 (2016) 186–190.","ista":"Kiermaier E, Moussion C, Veldkamp C, Gerardy  Schahn R, de Vries I, Williams L, Chaffee G, Phillips A, Freiberger F, Imre R, Taleski D, Payne R, Braun A, Förster R, Mechtler K, Mühlenhoff M, Volkman B, Sixt MK. 2016. Polysialylation controls dendritic cell trafficking by regulating chemokine recognition. Science. 351(6269), 186–190.","ieee":"E. Kiermaier <i>et al.</i>, “Polysialylation controls dendritic cell trafficking by regulating chemokine recognition,” <i>Science</i>, vol. 351, no. 6269. American Association for the Advancement of Science, pp. 186–190, 2016.","apa":"Kiermaier, E., Moussion, C., Veldkamp, C., Gerardy  Schahn, R., de Vries, I., Williams, L., … Sixt, M. K. (2016). Polysialylation controls dendritic cell trafficking by regulating chemokine recognition. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.aad0512\">https://doi.org/10.1126/science.aad0512</a>"},"publisher":"American Association for the Advancement of Science","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5583642/","open_access":"1"}],"year":"2016","oa":1,"publication_status":"published"},{"month":"07","department":[{"_id":"LaEr"}],"day":"01","issue":"7","oa_version":"Preprint","abstract":[{"text":"We show that the Anderson model has a transition from localization to delocalization at exactly 2 dimensional growth rate on antitrees with normalized edge weights which are certain discrete graphs. The kinetic part has a one-dimensional structure allowing a description through transfer matrices which involve some Schur complement. For such operators we introduce the notion of having one propagating channel and extend theorems from the theory of one-dimensional Jacobi operators that relate the behavior of transfer matrices with the spectrum. These theorems are then applied to the considered model. In essence, in a certain energy region the kinetic part averages the random potentials along shells and the transfer matrices behave similar as for a one-dimensional operator with random potential of decaying variance. At d dimensional growth for d&gt;2 this effective decay is strong enough to obtain absolutely continuous spectrum, whereas for some uniform d dimensional growth with d&lt;2 one has pure point spectrum in this energy region. At exactly uniform 2 dimensional growth also some singular continuous spectrum appears, at least at small disorder. As a corollary we also obtain a change from singular spectrum (d≤2) to absolutely continuous spectrum (d≥3) for random operators of the type rΔdr+λ on ℤd, where r is an orthogonal radial projection, Δd the discrete adjacency operator (Laplacian) on ℤd and λ a random potential. ","lang":"eng"}],"intvolume":"        17","publist_id":"5558","citation":{"apa":"Sadel, C. (2016). Anderson transition at 2 dimensional growth rate on antitrees and spectral theory for operators with one propagating channel. <i>Annales Henri Poincare</i>. Birkhäuser. <a href=\"https://doi.org/10.1007/s00023-015-0456-3\">https://doi.org/10.1007/s00023-015-0456-3</a>","ieee":"C. Sadel, “Anderson transition at 2 dimensional growth rate on antitrees and spectral theory for operators with one propagating channel,” <i>Annales Henri Poincare</i>, vol. 17, no. 7. Birkhäuser, pp. 1631–1675, 2016.","mla":"Sadel, Christian. “Anderson Transition at 2 Dimensional Growth Rate on Antitrees and Spectral Theory for Operators with One Propagating Channel.” <i>Annales Henri Poincare</i>, vol. 17, no. 7, Birkhäuser, 2016, pp. 1631–75, doi:<a href=\"https://doi.org/10.1007/s00023-015-0456-3\">10.1007/s00023-015-0456-3</a>.","ama":"Sadel C. Anderson transition at 2 dimensional growth rate on antitrees and spectral theory for operators with one propagating channel. <i>Annales Henri Poincare</i>. 2016;17(7):1631-1675. doi:<a href=\"https://doi.org/10.1007/s00023-015-0456-3\">10.1007/s00023-015-0456-3</a>","chicago":"Sadel, Christian. “Anderson Transition at 2 Dimensional Growth Rate on Antitrees and Spectral Theory for Operators with One Propagating Channel.” <i>Annales Henri Poincare</i>. Birkhäuser, 2016. <a href=\"https://doi.org/10.1007/s00023-015-0456-3\">https://doi.org/10.1007/s00023-015-0456-3</a>.","ista":"Sadel C. 2016. Anderson transition at 2 dimensional growth rate on antitrees and spectral theory for operators with one propagating channel. Annales Henri Poincare. 17(7), 1631–1675.","short":"C. Sadel, Annales Henri Poincare 17 (2016) 1631–1675."},"publisher":"Birkhäuser","main_file_link":[{"url":"http://arxiv.org/abs/1501.04287","open_access":"1"}],"year":"2016","oa":1,"publication_status":"published","_id":"1608","date_updated":"2021-01-12T06:51:58Z","type":"journal_article","volume":17,"status":"public","quality_controlled":"1","date_published":"2016-07-01T00:00:00Z","author":[{"first_name":"Christian","orcid":"0000-0001-8255-3968","full_name":"Sadel, Christian","id":"4760E9F8-F248-11E8-B48F-1D18A9856A87","last_name":"Sadel"}],"scopus_import":1,"language":[{"iso":"eng"}],"doi":"10.1007/s00023-015-0456-3","title":"Anderson transition at 2 dimensional growth rate on antitrees and spectral theory for operators with one propagating channel","ec_funded":1,"page":"1631 - 1675","publication":"Annales Henri Poincare","date_created":"2018-12-11T11:53:00Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7"}]},{"volume":75,"type":"journal_article","_id":"1612","date_updated":"2021-01-12T06:52:00Z","quality_controlled":"1","status":"public","scopus_import":1,"author":[{"id":"3B32BAA8-F248-11E8-B48F-1D18A9856A87","last_name":"Kazda","first_name":"Alexandr","full_name":"Kazda, Alexandr"}],"date_published":"2016-02-01T00:00:00Z","month":"02","department":[{"_id":"VlKo"}],"language":[{"iso":"eng"}],"abstract":[{"text":"We prove that whenever A is a 3-conservative relational structure with only binary and unary relations,then the algebra of polymorphisms of A either has no Taylor operation (i.e.,CSP(A)is NP-complete),or it generates an SD(∧) variety (i.e.,CSP(A)has bounded width).","lang":"eng"}],"oa_version":"Preprint","issue":"1","day":"01","publist_id":"5554","title":"CSP for binary conservative relational structures","doi":"10.1007/s00012-015-0358-8","intvolume":"        75","date_created":"2018-12-11T11:53:01Z","publication":"Algebra Universalis","publisher":"Springer","citation":{"ista":"Kazda A. 2016. CSP for binary conservative relational structures. Algebra Universalis. 75(1), 75–84.","short":"A. Kazda, Algebra Universalis 75 (2016) 75–84.","mla":"Kazda, Alexandr. “CSP for Binary Conservative Relational Structures.” <i>Algebra Universalis</i>, vol. 75, no. 1, Springer, 2016, pp. 75–84, doi:<a href=\"https://doi.org/10.1007/s00012-015-0358-8\">10.1007/s00012-015-0358-8</a>.","chicago":"Kazda, Alexandr. “CSP for Binary Conservative Relational Structures.” <i>Algebra Universalis</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00012-015-0358-8\">https://doi.org/10.1007/s00012-015-0358-8</a>.","ama":"Kazda A. CSP for binary conservative relational structures. <i>Algebra Universalis</i>. 2016;75(1):75-84. doi:<a href=\"https://doi.org/10.1007/s00012-015-0358-8\">10.1007/s00012-015-0358-8</a>","apa":"Kazda, A. (2016). CSP for binary conservative relational structures. <i>Algebra Universalis</i>. Springer. <a href=\"https://doi.org/10.1007/s00012-015-0358-8\">https://doi.org/10.1007/s00012-015-0358-8</a>","ieee":"A. Kazda, “CSP for binary conservative relational structures,” <i>Algebra Universalis</i>, vol. 75, no. 1. Springer, pp. 75–84, 2016."},"page":"75 - 84","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1112.1099"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publication_status":"published","oa":1,"year":"2016"}]