[{"abstract":[{"lang":"eng","text":"Genotypic, phenotypic and demographic data for 2128 wild snapdragons and 1127 open-pollinated progeny from a natural hybrid zone, collected as part of Tom Ellis' PhD thesis (submitted) February 2016).\r\n\r\nTissue samples were sent to LGC Genomics in Berlin for DNA extraction, and genotyping at 70 SNP markers by KASPR genotyping. 29 of these SNPs failed to amplify reliably, and have been removed from this dataset.\r\n\r\nOther data were retreived from an online database of this population at www.antspec.org."}],"month":"02","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"_id":"5553","contributor":[{"orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H","last_name":"Barton","contributor_type":"project_manager"}],"date_published":"2016-02-19T00:00:00Z","date_created":"2018-12-12T12:31:30Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"relation":"main_file","checksum":"4ae751b1fa4897fa216241f975a57313","access_level":"open_access","file_name":"IST-2016-37-v1+1_paternity_archive.zip","content_type":"application/zip","date_updated":"2020-07-14T12:47:01Z","file_size":132808,"file_id":"5620","creator":"system","date_created":"2018-12-12T13:03:02Z"}],"date_updated":"2024-02-21T13:51:14Z","author":[{"orcid":"0000-0002-4014-8478","last_name":"Field","first_name":"David","full_name":"Field, David","id":"419049E2-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Ellis, Thomas","last_name":"Ellis","first_name":"Thomas","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8511-0254"}],"related_material":{"record":[{"id":"1398","relation":"research_paper","status":"public"}]},"file_date_updated":"2020-07-14T12:47:01Z","type":"research_data","license":"https://creativecommons.org/publicdomain/zero/1.0/","day":"19","datarep_id":"37","has_accepted_license":"1","oa":1,"oa_version":"Published Version","citation":{"short":"D. Field, T. Ellis, (2016).","ama":"Field D, Ellis T. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:37\">10.15479/AT:ISTA:37</a>","ista":"Field D, Ellis T. 2016. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:37\">10.15479/AT:ISTA:37</a>.","mla":"Field, David, and Thomas Ellis. <i>Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:37\">10.15479/AT:ISTA:37</a>.","chicago":"Field, David, and Thomas Ellis. “Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:37\">https://doi.org/10.15479/AT:ISTA:37</a>.","apa":"Field, D., &#38; Ellis, T. (2016). Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:37\">https://doi.org/10.15479/AT:ISTA:37</a>","ieee":"D. Field and T. Ellis, “Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012.” Institute of Science and Technology Austria, 2016."},"department":[{"_id":"NiBa"}],"doi":"10.15479/AT:ISTA:37","publisher":"Institute of Science and Technology Austria","keyword":["paternity assignment","pedigree","matting patterns","assortative mating","Antirrhinum majus","frequency-dependent selection","plant-pollinator interaction"],"ddc":["576"],"status":"public","title":"Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012","year":"2016"},{"datarep_id":"43","oa_version":"Published Version","oa":1,"has_accepted_license":"1","citation":{"ama":"Tugrul M. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:43\">10.15479/AT:ISTA:43</a>","ista":"Tugrul M. 2016. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:43\">10.15479/AT:ISTA:43</a>.","short":"M. Tugrul, (2016).","chicago":"Tugrul, Murat. “Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:43\">https://doi.org/10.15479/AT:ISTA:43</a>.","mla":"Tugrul, Murat. <i>Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:43\">10.15479/AT:ISTA:43</a>.","apa":"Tugrul, M. (2016). Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:43\">https://doi.org/10.15479/AT:ISTA:43</a>","ieee":"M. Tugrul, “Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.” Institute of Science and Technology Austria, 2016."},"doi":"10.15479/AT:ISTA:43","department":[{"_id":"NiBa"},{"_id":"JoBo"}],"publisher":"Institute of Science and Technology Austria","keyword":["RNAP binding","de novo promoter evolution","lac promoter"],"year":"2016","status":"public","title":"Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase","author":[{"first_name":"Murat","last_name":"Tugrul","full_name":"Tugrul, Murat","id":"37C323C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8523-0758"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"1131"}]},"file_date_updated":"2020-07-14T12:47:01Z","type":"research_data","day":"12","date_created":"2018-12-12T12:31:30Z","date_published":"2016-05-12T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"checksum":"1fc0a10bb7ce110fcb5e1fbe3cf0c4e2","access_level":"open_access","relation":"main_file","file_name":"IST-2016-43-v1+1_DATA_MTugrul_PhDThesis_Chapter3.zip","content_type":"application/zip","date_updated":"2020-07-14T12:47:01Z","file_size":1123495,"creator":"system","file_id":"5626","date_created":"2018-12-12T13:03:08Z"}],"date_updated":"2024-02-21T13:50:34Z","month":"05","abstract":[{"text":"The data stored here is used in Murat Tugrul's PhD thesis (Chapter 3), which is related to the evolution of bacterial RNA polymerase binding.\r\nMagdalena Steinrueck (PhD Student in Calin Guet's group at IST Austria) performed the experiments and created the data on de novo promoter evolution. Fabienne Jesse (PhD Student in Jon Bollback's group at IST Austria) performed the experiments and created the data on lac promoter evolution.","lang":"eng"}],"article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"contributor":[{"id":"2C023F40-F248-11E8-B48F-1D18A9856A87","last_name":"Steinrück","first_name":"Magdalena","contributor_type":"researcher"},{"id":"4C8C26A4-F248-11E8-B48F-1D18A9856A87","contributor_type":"researcher","first_name":"Fabienne","last_name":"Jesse"}],"_id":"5554"},{"file":[{"content_type":"application/zip","access_level":"open_access","relation":"main_file","checksum":"9f96cddbcd4ed689f48712ffe234d5e5","file_name":"IST-2016-44-v1+1_migrationAnalyzer.zip","file_id":"5621","creator":"system","date_created":"2018-12-12T13:03:03Z","date_updated":"2020-07-14T12:47:02Z","file_size":20692}],"date_updated":"2024-02-21T13:50:06Z","date_published":"2016-07-08T00:00:00Z","date_created":"2018-12-12T12:31:31Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"This FIJI script calculates the population average of the migration speed as a function of time of all cells from wide field microscopy movies."}],"month":"07","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"_id":"5555","department":[{"_id":"Bio"}],"doi":"10.15479/AT:ISTA:44","citation":{"ista":"Hauschild R. 2016. Fiji script to determine average speed and direction of migration of cells, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:44\">10.15479/AT:ISTA:44</a>.","ama":"Hauschild R. Fiji script to determine average speed and direction of migration of cells. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:44\">10.15479/AT:ISTA:44</a>","short":"R. Hauschild, (2016).","apa":"Hauschild, R. (2016). Fiji script to determine average speed and direction of migration of cells. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:44\">https://doi.org/10.15479/AT:ISTA:44</a>","ieee":"R. Hauschild, “Fiji script to determine average speed and direction of migration of cells.” Institute of Science and Technology Austria, 2016.","chicago":"Hauschild, Robert. “Fiji Script to Determine Average Speed and Direction of Migration of Cells.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:44\">https://doi.org/10.15479/AT:ISTA:44</a>.","mla":"Hauschild, Robert. <i>Fiji Script to Determine Average Speed and Direction of Migration of Cells</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:44\">10.15479/AT:ISTA:44</a>."},"ddc":["570"],"publisher":"Institute of Science and Technology Austria","keyword":["cell migration","wide field microscopy","FIJI"],"year":"2016","title":"Fiji script to determine average speed and direction of migration of cells","status":"public","datarep_id":"44","oa":1,"has_accepted_license":"1","oa_version":"Published Version","type":"research_data","day":"08","author":[{"orcid":"0000-0001-9843-3522","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Hauschild","full_name":"Hauschild, Robert"}],"file_date_updated":"2020-07-14T12:47:02Z"},{"oa":1,"oa_version":"Published Version","has_accepted_license":"1","datarep_id":"45","status":"public","year":"2016","title":"MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'","department":[{"_id":"ToBo"}],"citation":{"chicago":"Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “MATLAB Analysis Code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:45\">https://doi.org/10.15479/AT:ISTA:45</a>.","mla":"Lukacisin, Martin, et al. <i>MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.”</i> Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:45\">10.15479/AT:ISTA:45</a>.","ieee":"M. Lukacisin, M. Landon, and R. Jajoo, “MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016.","apa":"Lukacisin, M., Landon, M., &#38; Jajoo, R. (2016). MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:45\">https://doi.org/10.15479/AT:ISTA:45</a>","ama":"Lukacisin M, Landon M, Jajoo R. MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:45\">10.15479/AT:ISTA:45</a>","ista":"Lukacisin M, Landon M, Jajoo R. 2016. MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:45\">10.15479/AT:ISTA:45</a>.","short":"M. Lukacisin, M. Landon, R. Jajoo, (2016)."},"doi":"10.15479/AT:ISTA:45","ddc":["571"],"publisher":"Institute of Science and Technology Austria","keyword":["transcription","pausing","backtracking","polymerase","RNA","NET-seq","nucleosome","basepairing"],"file_date_updated":"2020-07-14T12:47:02Z","author":[{"id":"298FFE8C-F248-11E8-B48F-1D18A9856A87","full_name":"Lukacisin, Martin","last_name":"Lukacisin","first_name":"Martin","orcid":"0000-0001-6549-4177"},{"last_name":"Landon","first_name":"Matthieu","full_name":"Landon, Matthieu"},{"last_name":"Jajoo","first_name":"Rishi","full_name":"Jajoo, Rishi"}],"related_material":{"record":[{"relation":"used_in_publication","status":"deleted","id":"8431"},{"id":"1029","status":"public","relation":"research_paper"}]},"day":"25","type":"research_data","license":"https://creativecommons.org/licenses/by-sa/4.0/","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2016-08-25T00:00:00Z","date_created":"2018-12-12T12:31:31Z","date_updated":"2024-02-21T13:51:53Z","file":[{"date_created":"2018-12-12T13:02:58Z","creator":"system","file_id":"5616","file_size":296722548,"date_updated":"2020-07-14T12:47:02Z","content_type":"application/zip","file_name":"IST-2016-45-v1+1_PaperCode.zip","relation":"main_file","access_level":"open_access","checksum":"ee697f2b1ade4dc14d6ac0334dd832ab"}],"_id":"5556","month":"08","abstract":[{"text":"MATLAB code and processed datasets available for reproducing the results in: \r\nLukačišin, M.*, Landon, M.*, Jajoo, R*. (2016) Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.\r\n*equal contributions","lang":"eng"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode","short":"CC BY-SA (4.0)","image":"/images/cc_by_sa.png","name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)"},"article_processing_charge":"No"},{"file_date_updated":"2020-07-14T12:47:02Z","author":[{"id":"446560C6-F248-11E8-B48F-1D18A9856A87","full_name":"Swoboda, Paul","last_name":"Swoboda","first_name":"Paul"}],"day":"20","type":"research_data","has_accepted_license":"1","oa":1,"oa_version":"Published Version","datarep_id":"46","status":"public","title":"Synthetic discrete tomography problems","year":"2016","citation":{"chicago":"Swoboda, Paul. “Synthetic Discrete Tomography Problems.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:46\">https://doi.org/10.15479/AT:ISTA:46</a>.","mla":"Swoboda, Paul. <i>Synthetic Discrete Tomography Problems</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:46\">10.15479/AT:ISTA:46</a>.","apa":"Swoboda, P. (2016). Synthetic discrete tomography problems. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:46\">https://doi.org/10.15479/AT:ISTA:46</a>","ieee":"P. Swoboda, “Synthetic discrete tomography problems.” Institute of Science and Technology Austria, 2016.","ista":"Swoboda P. 2016. Synthetic discrete tomography problems, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:46\">10.15479/AT:ISTA:46</a>.","ama":"Swoboda P. Synthetic discrete tomography problems. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:46\">10.15479/AT:ISTA:46</a>","short":"P. Swoboda, (2016)."},"department":[{"_id":"VlKo"}],"doi":"10.15479/AT:ISTA:46","keyword":["discrete tomography"],"publisher":"Institute of Science and Technology Austria","ddc":["006"],"_id":"5557","contributor":[{"first_name":"Jan","last_name":"Kuske","contributor_type":"data_collector"}],"abstract":[{"text":"Small synthetic discrete tomography problems.\r\nSizes are 32x32, 64z64 and 256x256.\r\nProjection angles are 2, 4, and 6.\r\nNumber of labels are 3 and 5.","lang":"eng"}],"month":"09","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","short":"CC0 (1.0)","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2016-09-20T00:00:00Z","date_created":"2018-12-12T12:31:31Z","date_updated":"2024-02-21T13:50:21Z","file":[{"file_name":"IST-2016-46-v1+1_discrete_tomography_synthetic.zip","checksum":"aa5a16a0dc888da7186fb8fc45e88439","access_level":"open_access","relation":"main_file","content_type":"application/zip","file_size":36058401,"date_updated":"2020-07-14T12:47:02Z","date_created":"2018-12-12T13:05:19Z","creator":"system","file_id":"5645"}]},{"file_date_updated":"2020-07-14T12:47:02Z","author":[{"id":"439F0C8C-F248-11E8-B48F-1D18A9856A87","full_name":"Bojsen-Hansen, Morten","first_name":"Morten","last_name":"Bojsen-Hansen","orcid":"0000-0002-4417-3224"}],"pubrep_id":"640","related_material":{"record":[{"id":"1122","status":"public","relation":"other"}]},"day":"23","type":"research_data","publist_id":"6238","has_accepted_license":"1","oa":1,"oa_version":"Published Version","datarep_id":"48","status":"public","year":"2016","title":"Tracking, Correcting and Absorbing Water Surface Waves","citation":{"ieee":"M. Bojsen-Hansen, “Tracking, Correcting and Absorbing Water Surface Waves.” Institute of Science and Technology Austria, 2016.","apa":"Bojsen-Hansen, M. (2016). Tracking, Correcting and Absorbing Water Surface Waves. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:48\">https://doi.org/10.15479/AT:ISTA:48</a>","mla":"Bojsen-Hansen, Morten. <i>Tracking, Correcting and Absorbing Water Surface Waves</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:48\">10.15479/AT:ISTA:48</a>.","chicago":"Bojsen-Hansen, Morten. “Tracking, Correcting and Absorbing Water Surface Waves.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:48\">https://doi.org/10.15479/AT:ISTA:48</a>.","short":"M. Bojsen-Hansen, (2016).","ista":"Bojsen-Hansen M. 2016. Tracking, Correcting and Absorbing Water Surface Waves, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:48\">10.15479/AT:ISTA:48</a>.","ama":"Bojsen-Hansen M. Tracking, Correcting and Absorbing Water Surface Waves. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:48\">10.15479/AT:ISTA:48</a>"},"doi":"10.15479/AT:ISTA:48","department":[{"_id":"ChWo"}],"ddc":["004"],"publisher":"Institute of Science and Technology Austria","_id":"5558","month":"09","abstract":[{"lang":"eng","text":"PhD thesis LaTeX source code"}],"article_processing_charge":"No","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-12T12:31:31Z","date_published":"2016-09-23T00:00:00Z","date_updated":"2024-02-21T13:50:48Z","file":[{"content_type":"application/x-bzip2","file_name":"IST-2016-48-v1+1_2016_Bojsen-Hansen_TCaAWSW.tar.bz2","checksum":"5b1b256ad796fbddb4b7729f5e45e444","relation":"main_file","access_level":"open_access","date_created":"2018-12-12T13:02:18Z","file_id":"5589","creator":"system","file_size":55237885,"date_updated":"2020-07-14T12:47:02Z"}]},{"pubrep_id":"587","related_material":{"record":[{"status":"public","relation":"research_data","id":"9719"}]},"license":"https://creativecommons.org/licenses/by-nc/4.0/","scopus_import":"1","day":"01","oa":1,"department":[{"_id":"CaGu"}],"citation":{"ieee":"S. Wielgoss, T. Bergmiller, A. M. Bischofberger, and A. R. Hall, “Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria,” <i>Molecular Biology and Evolution</i>, vol. 33, no. 3. Oxford University Press, pp. 770–782, 2016.","apa":"Wielgoss, S., Bergmiller, T., Bischofberger, A. M., &#38; Hall, A. R. (2016). Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria. <i>Molecular Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/molbev/msv270\">https://doi.org/10.1093/molbev/msv270</a>","mla":"Wielgoss, Sébastien, et al. “Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria.” <i>Molecular Biology and Evolution</i>, vol. 33, no. 3, Oxford University Press, 2016, pp. 770–82, doi:<a href=\"https://doi.org/10.1093/molbev/msv270\">10.1093/molbev/msv270</a>.","chicago":"Wielgoss, Sébastien, Tobias Bergmiller, Anna M. Bischofberger, and Alex R. Hall. “Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria.” <i>Molecular Biology and Evolution</i>. Oxford University Press, 2016. <a href=\"https://doi.org/10.1093/molbev/msv270\">https://doi.org/10.1093/molbev/msv270</a>.","short":"S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2016) 770–782.","ista":"Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. 2016. Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria. Molecular Biology and Evolution. 33(3), 770–782.","ama":"Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria. <i>Molecular Biology and Evolution</i>. 2016;33(3):770-782. doi:<a href=\"https://doi.org/10.1093/molbev/msv270\">10.1093/molbev/msv270</a>"},"publication":"Molecular Biology and Evolution","abstract":[{"text":"Parasitism creates selection for resistance mechanisms in host populations and is hypothesized to promote increased host evolvability. However, the influence of these traits on host evolution when parasites are no longer present is unclear. We used experimental evolution and whole-genome sequencing of Escherichia coli to determine the effects of past and present exposure to parasitic viruses (phages) on the spread of mutator alleles, resistance, and bacterial competitive fitness. We found that mutator alleles spread rapidly during adaptation to any of four different phage species, and this pattern was even more pronounced with multiple phages present simultaneously. However, hypermutability did not detectably accelerate adaptation in the absence of phages and recovery of fitness costs associated with resistance. Several lineages evolved phage resistance through elevated mucoidy, and during subsequent evolution in phage-free conditions they rapidly reverted to nonmucoid, phage-susceptible phenotypes. Genome sequencing revealed that this phenotypic reversion was achieved by additional genetic changes rather than by genotypic reversion of the initial resistance mutations. Insertion sequence (IS) elements played a key role in both the acquisition of resistance and adaptation in the absence of parasites; unlike single nucleotide polymorphisms, IS insertions were not more frequent in mutator lineages. Our results provide a genetic explanation for rapid reversion of mucoidy, a phenotype observed in other bacterial species including human pathogens. Moreover, this demonstrates that the types of genetic change underlying adaptation to fitness costs, and consequently the impact of evolvability mechanisms such as increased point-mutation rates, depend critically on the mechanism of resistance.","lang":"eng"}],"publication_status":"published","date_created":"2018-12-18T13:18:10Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","intvolume":"        33","volume":33,"pmid":1,"author":[{"last_name":"Wielgoss","first_name":"Sébastien","full_name":"Wielgoss, Sébastien"},{"id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","first_name":"Tobias","last_name":"Bergmiller","full_name":"Bergmiller, Tobias","orcid":"0000-0001-5396-4346"},{"full_name":"Bischofberger, Anna M.","first_name":"Anna M.","last_name":"Bischofberger"},{"first_name":"Alex R.","last_name":"Hall","full_name":"Hall, Alex R."}],"file_date_updated":"2020-07-14T12:47:10Z","type":"journal_article","oa_version":"Published Version","has_accepted_license":"1","doi":"10.1093/molbev/msv270","publisher":"Oxford University Press","ddc":["576"],"acknowledgement":"The authors thank three anonymous reviewers and the editor for helpful comments on the manuscript, as well as Dominique Schneider for feedback on an earlier draft, Jenna Gallie for lytic λ and Julien Capelle for T5 and T6. This work was supported by the Swiss National Science Foundation (PZ00P3_148255 to A.H.) and an EU Marie Curie PEOPLE Postdoctoral Fellowship for Career Development (FP7-PEOPLE-2012-IEF-331824 to S.W.).","year":"2016","title":"Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria","status":"public","publication_identifier":{"eissn":["1537-1719"],"issn":["0737-4038"]},"month":"03","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"_id":"5749","quality_controlled":"1","date_published":"2016-03-01T00:00:00Z","language":[{"iso":"eng"}],"issue":"3","page":"770-782","file":[{"content_type":"application/pdf","file_name":"2016_MolBiolEvol_Wielgoss.pdf","relation":"main_file","access_level":"open_access","checksum":"47d9010690b6c5c17f2ac830cc63ac5c","date_created":"2018-12-18T13:21:45Z","file_id":"5750","creator":"dernst","file_size":634037,"date_updated":"2020-07-14T12:47:10Z"}],"date_updated":"2023-09-05T13:46:05Z","external_id":{"pmid":["26609077"]}},{"type":"journal_article","author":[{"full_name":"Mattei, Simone","last_name":"Mattei","first_name":"Simone"},{"full_name":"Schur, Florian","last_name":"Schur","first_name":"Florian","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4790-8078"},{"first_name":"John AG","last_name":"Briggs","full_name":"Briggs, John AG"}],"file_date_updated":"2020-07-14T12:47:11Z","doi":"10.1016/j.coviro.2016.02.008","publisher":"Elsevier","ddc":["570"],"title":"Retrovirus maturation—an extraordinary structural transformation","status":"public","year":"2016","has_accepted_license":"1","oa_version":"Published Version","month":"03","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"5771","publication_identifier":{"issn":["1879-6257"]},"page":"27-35","issue":"6","file":[{"file_size":1773842,"date_updated":"2020-07-14T12:47:11Z","date_created":"2019-01-09T13:05:44Z","creator":"dernst","file_id":"5812","file_name":"2016_CurrentOpinion_Mattei.pdf","relation":"main_file","access_level":"open_access","checksum":"320939d28ebd1adfb122338019892508","content_type":"application/pdf"}],"date_updated":"2021-01-12T08:03:22Z","date_published":"2016-03-22T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"day":"22","citation":{"apa":"Mattei, S., Schur, F. K., &#38; Briggs, J. A. (2016). Retrovirus maturation—an extraordinary structural transformation. <i>Current Opinion in Virology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.coviro.2016.02.008\">https://doi.org/10.1016/j.coviro.2016.02.008</a>","ieee":"S. Mattei, F. K. Schur, and J. A. Briggs, “Retrovirus maturation—an extraordinary structural transformation,” <i>Current Opinion in Virology</i>, vol. 18, no. 6. Elsevier, pp. 27–35, 2016.","mla":"Mattei, Simone, et al. “Retrovirus Maturation—an Extraordinary Structural Transformation.” <i>Current Opinion in Virology</i>, vol. 18, no. 6, Elsevier, 2016, pp. 27–35, doi:<a href=\"https://doi.org/10.1016/j.coviro.2016.02.008\">10.1016/j.coviro.2016.02.008</a>.","chicago":"Mattei, Simone, Florian KM Schur, and John AG Briggs. “Retrovirus Maturation—an Extraordinary Structural Transformation.” <i>Current Opinion in Virology</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.coviro.2016.02.008\">https://doi.org/10.1016/j.coviro.2016.02.008</a>.","short":"S. Mattei, F.K. Schur, J.A. Briggs, Current Opinion in Virology 18 (2016) 27–35.","ista":"Mattei S, Schur FK, Briggs JA. 2016. Retrovirus maturation—an extraordinary structural transformation. Current Opinion in Virology. 18(6), 27–35.","ama":"Mattei S, Schur FK, Briggs JA. Retrovirus maturation—an extraordinary structural transformation. <i>Current Opinion in Virology</i>. 2016;18(6):27-35. doi:<a href=\"https://doi.org/10.1016/j.coviro.2016.02.008\">10.1016/j.coviro.2016.02.008</a>"},"publication":"Current Opinion in Virology","oa":1,"publication_status":"published","abstract":[{"text":"Retroviruses such as HIV-1 assemble and bud from infected cells in an immature, non-infectious form. Subsequently, a series of proteolytic cleavages catalysed by the viral protease leads to a spectacular structural rearrangement of the viral particle into a mature form that is competent to fuse with and infect a new cell. Maturation involves changes in the structures of protein domains, in the interactions between protein domains, and in the architecture of the viral components that are assembled by the proteins. Tight control of proteolytic cleavages at different sites is required for successful maturation, and the process is a major target of antiretroviral drugs. Here we will describe what is known about the structures of immature and mature retrovirus particles, and about the maturation process by which one transitions into the other. Despite a wealth of available data, fundamental questions about retroviral maturation remain unanswered.","lang":"eng"}],"extern":"1","date_created":"2018-12-20T21:13:59Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":18,"intvolume":"        18"},{"abstract":[{"lang":"eng","text":"Discretization of sphere in the integer space follows a particular discretization scheme, which, in principle, conforms to some topological model. This eventually gives rise to interesting topological properties of a discrete spherical surface, which need to be investigated for its analytical characterization. This paper presents some novel results on the local topological properties of the naive model of discrete sphere. They follow from the bijection of each quadraginta octant of naive sphere with its projection map called f -map on the corresponding functional plane and from the characterization of certain jumps in the f-map. As an application, we have shown how these properties can be used in designing an efficient reconstruction algorithm for a naive spherical surface from an input voxel set when it is sparse or noisy."}],"publication_status":"published","extern":"1","volume":9667,"intvolume":"      9667","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_created":"2019-01-08T20:44:24Z","day":"02","alternative_title":["LNCS"],"publication":"Computational Topology in Image Context","citation":{"apa":"Sen, N., Biswas, R., &#38; Bhowmick, P. (2016). On some local topological properties of naive discrete sphere. In <i>Computational Topology in Image Context</i> (Vol. 9667, pp. 253–264). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">https://doi.org/10.1007/978-3-319-39441-1_23</a>","ieee":"N. Sen, R. Biswas, and P. Bhowmick, “On some local topological properties of naive discrete sphere,” in <i>Computational Topology in Image Context</i>, vol. 9667, Cham: Springer Nature, 2016, pp. 253–264.","mla":"Sen, Nabhasmita, et al. “On Some Local Topological Properties of Naive Discrete Sphere.” <i>Computational Topology in Image Context</i>, vol. 9667, Springer Nature, 2016, pp. 253–64, doi:<a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">10.1007/978-3-319-39441-1_23</a>.","chicago":"Sen, Nabhasmita, Ranita Biswas, and Partha Bhowmick. “On Some Local Topological Properties of Naive Discrete Sphere.” In <i>Computational Topology in Image Context</i>, 9667:253–64. Cham: Springer Nature, 2016. <a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">https://doi.org/10.1007/978-3-319-39441-1_23</a>.","short":"N. Sen, R. Biswas, P. Bhowmick, in:, Computational Topology in Image Context, Springer Nature, Cham, 2016, pp. 253–264.","ama":"Sen N, Biswas R, Bhowmick P. On some local topological properties of naive discrete sphere. In: <i>Computational Topology in Image Context</i>. Vol 9667. Cham: Springer Nature; 2016:253-264. doi:<a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">10.1007/978-3-319-39441-1_23</a>","ista":"Sen N, Biswas R, Bhowmick P. 2016.On some local topological properties of naive discrete sphere. In: Computational Topology in Image Context. LNCS, vol. 9667, 253–264."},"department":[{"_id":"HeEd"}],"_id":"5805","article_processing_charge":"No","month":"06","publication_identifier":{"eisbn":["978-3-319-39441-1"],"eissn":["1611-3349"],"isbn":["978-3-319-39440-4"],"issn":["0302-9743"]},"date_updated":"2022-01-28T08:01:22Z","page":"253-264","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2016-06-02T00:00:00Z","conference":{"location":"Marseille, France","end_date":"2016-06-17","name":"CTIC: Computational Topology in Image Context","start_date":"2016-06-15"},"type":"book_chapter","author":[{"full_name":"Sen, Nabhasmita","last_name":"Sen","first_name":"Nabhasmita"},{"orcid":"0000-0002-5372-7890","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","last_name":"Biswas","first_name":"Ranita","full_name":"Biswas, Ranita"},{"last_name":"Bhowmick","first_name":"Partha","full_name":"Bhowmick, Partha"}],"year":"2016","status":"public","title":"On some local topological properties of naive discrete sphere","place":"Cham","publisher":"Springer Nature","doi":"10.1007/978-3-319-39441-1_23","oa_version":"None"},{"intvolume":"      9647","volume":9647,"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_created":"2019-01-08T20:44:37Z","extern":"1","publication_status":"published","abstract":[{"lang":"eng","text":"Although the concept of functional plane for naive plane is studied and reported in the literature in great detail, no similar study is yet found for naive sphere. This article exposes the first study in this line, opening up further prospects of analyzing the topological properties of sphere in the discrete space. We show that each quadraginta octant Q of a naive sphere forms a bijection with its projected pixel set on a unique coordinate plane, which thereby serves as the functional plane of Q, and hence gives rise to merely mono-jumps during back projection. The other two coordinate planes serve as para-functional and dia-functional planes for Q, as the former is ‘mono-jumping’ but not bijective, whereas the latter holds neither of the two. Owing to this, the quadraginta octants form symmetry groups and subgroups with equivalent jump conditions. We also show a potential application in generating a special class of discrete 3D circles based on back projection and jump bridging by Steiner voxels. A circle in this class possesses 4-symmetry, uniqueness, and bounded distance from the underlying real sphere and real plane."}],"publication":"Discrete Geometry for Computer Imagery","citation":{"chicago":"Biswas, Ranita, and Partha Bhowmick. “On Functionality of Quadraginta Octants of Naive Sphere with Application to Circle Drawing.” In <i>Discrete Geometry for Computer Imagery</i>, 9647:256–67. Cham: Springer Nature, 2016. <a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">https://doi.org/10.1007/978-3-319-32360-2_20</a>.","mla":"Biswas, Ranita, and Partha Bhowmick. “On Functionality of Quadraginta Octants of Naive Sphere with Application to Circle Drawing.” <i>Discrete Geometry for Computer Imagery</i>, vol. 9647, Springer Nature, 2016, pp. 256–67, doi:<a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">10.1007/978-3-319-32360-2_20</a>.","ieee":"R. Biswas and P. Bhowmick, “On functionality of quadraginta octants of naive sphere with application to circle drawing,” in <i>Discrete Geometry for Computer Imagery</i>, Nantes, France, 2016, vol. 9647, pp. 256–267.","apa":"Biswas, R., &#38; Bhowmick, P. (2016). On functionality of quadraginta octants of naive sphere with application to circle drawing. In <i>Discrete Geometry for Computer Imagery</i> (Vol. 9647, pp. 256–267). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">https://doi.org/10.1007/978-3-319-32360-2_20</a>","ista":"Biswas R, Bhowmick P. 2016. On functionality of quadraginta octants of naive sphere with application to circle drawing. Discrete Geometry for Computer Imagery. DGCI: International Conference on Discrete Geometry for Computer Imagery, LNCS, vol. 9647, 256–267.","ama":"Biswas R, Bhowmick P. On functionality of quadraginta octants of naive sphere with application to circle drawing. In: <i>Discrete Geometry for Computer Imagery</i>. Vol 9647. Cham: Springer Nature; 2016:256-267. doi:<a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">10.1007/978-3-319-32360-2_20</a>","short":"R. Biswas, P. Bhowmick, in:, Discrete Geometry for Computer Imagery, Springer Nature, Cham, 2016, pp. 256–267."},"department":[{"_id":"HeEd"}],"alternative_title":["LNCS"],"day":"09","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2016-04-09T00:00:00Z","date_updated":"2022-01-28T08:10:11Z","page":"256-267","publication_identifier":{"issn":["0302-9743","1611-3349"],"isbn":["978-3-319-32359-6"],"eisbn":["978-3-319-32360-2"]},"_id":"5806","article_processing_charge":"No","month":"04","oa_version":"None","status":"public","place":"Cham","title":"On functionality of quadraginta octants of naive sphere with application to circle drawing","year":"2016","publisher":"Springer Nature","doi":"10.1007/978-3-319-32360-2_20","author":[{"id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","last_name":"Biswas","first_name":"Ranita","full_name":"Biswas, Ranita","orcid":"0000-0002-5372-7890"},{"full_name":"Bhowmick, Partha","first_name":"Partha","last_name":"Bhowmick"}],"conference":{"location":"Nantes, France","name":"DGCI: International Conference on Discrete Geometry for Computer Imagery","end_date":"2016-04-20","start_date":"2016-04-18"},"type":"conference"},{"extern":"1","page":"86-100","date_updated":"2022-01-28T08:13:03Z","date_created":"2019-01-08T20:45:19Z","date_published":"2016-01-06T00:00:00Z","quality_controlled":"1","volume":9448,"language":[{"iso":"eng"}],"intvolume":"      9448","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","publication_status":"published","abstract":[{"text":"A discrete spherical circle is a topologically well-connected 3D circle in the integer space, which belongs to a discrete sphere as well as a discrete plane. It is one of the most important 3D geometric primitives, but has not possibly yet been studied up to its merit. This paper is a maiden exposition of some of its elementary properties, which indicates a sense of its profound theoretical prospects in the framework of digital geometry. We have shown how different types of discretization can lead to forbidden and admissible classes, when one attempts to define the discretization of a spherical circle in terms of intersection between a discrete sphere and a discrete plane. Several fundamental theoretical results have been presented, the algorithm for construction of discrete spherical circles has been discussed, and some test results have been furnished to demonstrate its practicality and usefulness.","lang":"eng"}],"month":"01","_id":"5809","publication_identifier":{"eissn":["1611-3349"],"isbn":["978-3-319-26144-7"],"issn":["0302-9743"],"eisbn":["978-3-319-26145-4"]},"publisher":"Springer Nature","department":[{"_id":"HeEd"}],"citation":{"short":"R. Biswas, P. Bhowmick, V.E. Brimkov, in:, Combinatorial Image Analysis, Springer Nature, Cham, 2016, pp. 86–100.","ista":"Biswas R, Bhowmick P, Brimkov VE. 2016.On the connectivity and smoothness of discrete spherical circles. In: Combinatorial image analysis. vol. 9448, 86–100.","ama":"Biswas R, Bhowmick P, Brimkov VE. On the connectivity and smoothness of discrete spherical circles. In: <i>Combinatorial Image Analysis</i>. Vol 9448. Cham: Springer Nature; 2016:86-100. doi:<a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">10.1007/978-3-319-26145-4_7</a>","ieee":"R. Biswas, P. Bhowmick, and V. E. Brimkov, “On the connectivity and smoothness of discrete spherical circles,” in <i>Combinatorial image analysis</i>, vol. 9448, Cham: Springer Nature, 2016, pp. 86–100.","apa":"Biswas, R., Bhowmick, P., &#38; Brimkov, V. E. (2016). On the connectivity and smoothness of discrete spherical circles. In <i>Combinatorial image analysis</i> (Vol. 9448, pp. 86–100). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">https://doi.org/10.1007/978-3-319-26145-4_7</a>","mla":"Biswas, Ranita, et al. “On the Connectivity and Smoothness of Discrete Spherical Circles.” <i>Combinatorial Image Analysis</i>, vol. 9448, Springer Nature, 2016, pp. 86–100, doi:<a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">10.1007/978-3-319-26145-4_7</a>.","chicago":"Biswas, Ranita, Partha Bhowmick, and Valentin E. Brimkov. “On the Connectivity and Smoothness of Discrete Spherical Circles.” In <i>Combinatorial Image Analysis</i>, 9448:86–100. Cham: Springer Nature, 2016. <a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">https://doi.org/10.1007/978-3-319-26145-4_7</a>."},"doi":"10.1007/978-3-319-26145-4_7","year":"2016","status":"public","publication":"Combinatorial image analysis","title":"On the connectivity and smoothness of discrete spherical circles","place":"Cham","oa_version":"None","conference":{"end_date":"2015-11-27","name":"IWCIA: International Workshop on Combinatorial Image Analysis","start_date":"2015-11-24","location":"Kolkata, India"},"type":"book_chapter","day":"06","author":[{"id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","full_name":"Biswas, Ranita","last_name":"Biswas","first_name":"Ranita","orcid":"0000-0002-5372-7890"},{"full_name":"Bhowmick, Partha","last_name":"Bhowmick","first_name":"Partha"},{"first_name":"Valentin E.","last_name":"Brimkov","full_name":"Brimkov, Valentin E."}]},{"volume":352,"intvolume":"       352","date_created":"2018-12-11T11:47:21Z","date_published":"2016-06-24T00:00:00Z","quality_controlled":0,"date_updated":"2021-01-12T08:05:06Z","extern":1,"issue":"6293","page":"1552 - 1555","_id":"587","abstract":[{"lang":"eng","text":"Quantum metrology exploits entangled states of particles to improve sensing precision beyond the limit achievable with uncorrelated particles. All previous methods required detection noise levels below this standard quantum limit to realize the benefits of the intrinsic sensitivity provided by these states.We experimentally demonstrate a widely applicable method for entanglement-enhanced measurements without low-noise detection. The method involves an intermediate quantum phase magnification step that eases implementation complexity. We used it to perform squeezed-state metrology 8 decibels below the standard quantum limit with a detection system that has a noise floor 10 decibels above the standard quantum limit."}],"publication_status":"published","month":"06","publist_id":"7214","oa":1,"year":"2016","publication":"Science","status":"public","title":"Quantum phase magnification","publisher":"American Association for the Advancement of Science","citation":{"mla":"Hosten, Onur, et al. “Quantum Phase Magnification.” <i>Science</i>, vol. 352, no. 6293, American Association for the Advancement of Science, 2016, pp. 1552–55, doi:<a href=\"https://doi.org/10.1126/science.aaf3397\">10.1126/science.aaf3397</a>.","chicago":"Hosten, Onur, Rajiv Krishnakumar, Nils Engelsen, and Mark Kasevich. “Quantum Phase Magnification.” <i>Science</i>. American Association for the Advancement of Science, 2016. <a href=\"https://doi.org/10.1126/science.aaf3397\">https://doi.org/10.1126/science.aaf3397</a>.","ieee":"O. Hosten, R. Krishnakumar, N. Engelsen, and M. Kasevich, “Quantum phase magnification,” <i>Science</i>, vol. 352, no. 6293. American Association for the Advancement of Science, pp. 1552–1555, 2016.","apa":"Hosten, O., Krishnakumar, R., Engelsen, N., &#38; Kasevich, M. (2016). Quantum phase magnification. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.aaf3397\">https://doi.org/10.1126/science.aaf3397</a>","short":"O. Hosten, R. Krishnakumar, N. Engelsen, M. Kasevich, Science 352 (2016) 1552–1555.","ama":"Hosten O, Krishnakumar R, Engelsen N, Kasevich M. Quantum phase magnification. <i>Science</i>. 2016;352(6293):1552-1555. doi:<a href=\"https://doi.org/10.1126/science.aaf3397\">10.1126/science.aaf3397</a>","ista":"Hosten O, Krishnakumar R, Engelsen N, Kasevich M. 2016. Quantum phase magnification. Science. 352(6293), 1552–1555."},"doi":"10.1126/science.aaf3397","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1601.07683"}],"author":[{"orcid":"0000-0002-2031-204X","full_name":"Onur Hosten","first_name":"Onur","last_name":"Hosten","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Rajiv","last_name":"Krishnakumar","full_name":"Krishnakumar, Rajiv"},{"first_name":"Nils","last_name":"Engelsen","full_name":"Engelsen, Nils J"},{"full_name":"Kasevich, Mark A","first_name":"Mark","last_name":"Kasevich"}],"day":"24","type":"journal_article"},{"publication_status":"published","month":"01","abstract":[{"lang":"eng","text":"Quantum metrology uses quantum entanglement - correlations in the properties of microscopic systems - to improve the statistical precision of physical measurements. When measuring a signal, such as the phase shift of a light beam or an atomic state, a prominent limitation to achievable precision arises from the noise associated with the counting of uncorrelated probe particles. This noise, commonly referred to as shot noise or projection noise, gives rise to the standard quantum limit (SQL) to phase resolution. However, it can be mitigated down to the fundamental Heisenberg limit by entangling the probe particles. Despite considerable experimental progress in a variety of physical systems, a question that persists is whether these methods can achieve performance levels that compare favourably with optimized conventional (non-entangled) systems. Here we demonstrate an approach that achieves unprecedented levels of metrological improvement using half a million 87Rb atoms in their 'clock' states. The ensemble is 20.1 ± 0.3 decibels (100-fold) spin-squeezed via an optical-cavity-based measurement. We directly resolve small microwave-induced rotations 18.5 ± 0.3 decibels (70-fold) beyond the SQL. The single-shot phase resolution of 147 microradians achieved by the apparatus is better than that achieved by the best engineered cold atom sensors despite lower atom numbers. We infer entanglement of more than 680 ± 35 particles in the atomic ensemble. Applications include atomic clocks, inertial sensors, and fundamental physics experiments such as tests of general relativity or searches for electron electric dipole moment. To this end, we demonstrate an atomic clock measurement with a quantum enhancement of 10.5 ± 0.3 decibels (11-fold), limited by the phase noise of our microwave source."}],"_id":"588","issue":"7587","extern":1,"page":"505 - 508","date_updated":"2021-01-12T08:05:07Z","date_created":"2018-12-11T11:47:21Z","quality_controlled":0,"date_published":"2016-01-28T00:00:00Z","intvolume":"       529","volume":529,"type":"journal_article","day":"28","author":[{"id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","first_name":"Onur","last_name":"Hosten","full_name":"Onur Hosten","orcid":"0000-0002-2031-204X"},{"first_name":"Nils","last_name":"Engelsen","full_name":"Engelsen, Nils J"},{"first_name":"Rajiv","last_name":"Krishnakumar","full_name":"Krishnakumar, Rajiv"},{"full_name":"Kasevich, Mark A","first_name":"Mark","last_name":"Kasevich"}],"citation":{"chicago":"Hosten, Onur, Nils Engelsen, Rajiv Krishnakumar, and Mark Kasevich. “Measurement Noise 100 Times Lower than the Quantum-Projection Limit Using Entangled Atoms.” <i>Nature</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nature16176\">https://doi.org/10.1038/nature16176</a>.","mla":"Hosten, Onur, et al. “Measurement Noise 100 Times Lower than the Quantum-Projection Limit Using Entangled Atoms.” <i>Nature</i>, vol. 529, no. 7587, Nature Publishing Group, 2016, pp. 505–08, doi:<a href=\"https://doi.org/10.1038/nature16176\">10.1038/nature16176</a>.","apa":"Hosten, O., Engelsen, N., Krishnakumar, R., &#38; Kasevich, M. (2016). Measurement noise 100 times lower than the quantum-projection limit using entangled atoms. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature16176\">https://doi.org/10.1038/nature16176</a>","ieee":"O. Hosten, N. Engelsen, R. Krishnakumar, and M. Kasevich, “Measurement noise 100 times lower than the quantum-projection limit using entangled atoms,” <i>Nature</i>, vol. 529, no. 7587. Nature Publishing Group, pp. 505–508, 2016.","ama":"Hosten O, Engelsen N, Krishnakumar R, Kasevich M. Measurement noise 100 times lower than the quantum-projection limit using entangled atoms. <i>Nature</i>. 2016;529(7587):505-508. doi:<a href=\"https://doi.org/10.1038/nature16176\">10.1038/nature16176</a>","ista":"Hosten O, Engelsen N, Krishnakumar R, Kasevich M. 2016. Measurement noise 100 times lower than the quantum-projection limit using entangled atoms. Nature. 529(7587), 505–508.","short":"O. Hosten, N. Engelsen, R. Krishnakumar, M. Kasevich, Nature 529 (2016) 505–508."},"doi":"10.1038/nature16176","publisher":"Nature Publishing Group","year":"2016","status":"public","title":"Measurement noise 100 times lower than the quantum-projection limit using entangled atoms","publication":"Nature","publist_id":"7215"},{"day":"16","type":"conference","conference":{"name":"CLEO: Conference on Lasers and Electro Optics","end_date":"2016-06-10","start_date":"2016-06-05","location":"San Jose, CA, United States"},"main_file_link":[{"url":"http://ieeexplore.ieee.org/document/7787611/"}],"author":[{"full_name":"Engelsen, Nils","last_name":"Engelsen","first_name":"Nils"},{"last_name":"Hosten","first_name":"Onur","full_name":"Hosten, Onur","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2031-204X"},{"full_name":"Krishnakumar, Rajiv","first_name":"Rajiv","last_name":"Krishnakumar"},{"first_name":"Mark","last_name":"Kasevich","full_name":"Kasevich, Mark"}],"status":"public","title":"Engineering spin squeezed states for quantum-enhanced atom interferometry","year":"2016","publisher":"IEEE","citation":{"short":"N. Engelsen, O. Hosten, R. Krishnakumar, M. Kasevich, in:, IEEE, 2016.","ama":"Engelsen N, Hosten O, Krishnakumar R, Kasevich M. Engineering spin squeezed states for quantum-enhanced atom interferometry. In: IEEE; 2016.","ista":"Engelsen N, Hosten O, Krishnakumar R, Kasevich M. 2016. Engineering spin squeezed states for quantum-enhanced atom interferometry. CLEO: Conference on Lasers and Electro Optics.","mla":"Engelsen, Nils, et al. <i>Engineering Spin Squeezed States for Quantum-Enhanced Atom Interferometry</i>. IEEE, 2016.","chicago":"Engelsen, Nils, Onur Hosten, Rajiv Krishnakumar, and Mark Kasevich. “Engineering Spin Squeezed States for Quantum-Enhanced Atom Interferometry.” IEEE, 2016.","ieee":"N. Engelsen, O. Hosten, R. Krishnakumar, and M. Kasevich, “Engineering spin squeezed states for quantum-enhanced atom interferometry,” presented at the CLEO: Conference on Lasers and Electro Optics, San Jose, CA, United States, 2016.","apa":"Engelsen, N., Hosten, O., Krishnakumar, R., &#38; Kasevich, M. (2016). Engineering spin squeezed states for quantum-enhanced atom interferometry. Presented at the CLEO: Conference on Lasers and Electro Optics, San Jose, CA, United States: IEEE."},"oa_version":"None","publist_id":"7213","_id":"592","article_processing_charge":"No","month":"12","abstract":[{"lang":"eng","text":"We create up to 20 dB spin-squeezed states of atomic ensembles using an optical cavity-based measurement. The prepared states are suitable for atomic sensors that require free space release of the atoms."}],"publication_status":"published","date_updated":"2021-01-12T08:05:15Z","extern":"1","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2016-12-16T00:00:00Z","quality_controlled":"1","date_created":"2018-12-11T11:47:23Z"},{"doi":"10.1038/nature16482","citation":{"short":"C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, P. Cramer, Nature 529 (2016) 551–554.","ista":"Bernecky C, Herzog F, Baumeister W, Plitzko J, Cramer P. 2016. Structure of transcribing mammalian RNA polymerase II. Nature. 529(7587), 551–554.","ama":"Bernecky C, Herzog F, Baumeister W, Plitzko J, Cramer P. Structure of transcribing mammalian RNA polymerase II. <i>Nature</i>. 2016;529(7587):551-554. doi:<a href=\"https://doi.org/10.1038/nature16482\">10.1038/nature16482</a>","apa":"Bernecky, C., Herzog, F., Baumeister, W., Plitzko, J., &#38; Cramer, P. (2016). Structure of transcribing mammalian RNA polymerase II. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature16482\">https://doi.org/10.1038/nature16482</a>","ieee":"C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, and P. Cramer, “Structure of transcribing mammalian RNA polymerase II,” <i>Nature</i>, vol. 529, no. 7587. Nature Publishing Group, pp. 551–554, 2016.","mla":"Bernecky, Carrie, et al. “Structure of Transcribing Mammalian RNA Polymerase II.” <i>Nature</i>, vol. 529, no. 7587, Nature Publishing Group, 2016, pp. 551–54, doi:<a href=\"https://doi.org/10.1038/nature16482\">10.1038/nature16482</a>.","chicago":"Bernecky, Carrie, Franz Herzog, Wolfgang Baumeister, Jürgen Plitzko, and Patrick Cramer. “Structure of Transcribing Mammalian RNA Polymerase II.” <i>Nature</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nature16482\">https://doi.org/10.1038/nature16482</a>."},"publisher":"Nature Publishing Group","publication":"Nature","status":"public","title":"Structure of transcribing mammalian RNA polymerase II","year":"2016","publist_id":"7205","oa_version":"None","type":"journal_article","day":"28","author":[{"id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","last_name":"Bernecky","first_name":"Carrie A","full_name":"Bernecky, Carrie A","orcid":"0000-0003-0893-7036"},{"full_name":"Herzog, Franz","last_name":"Herzog","first_name":"Franz"},{"last_name":"Baumeister","first_name":"Wolfgang","full_name":"Baumeister, Wolfgang"},{"full_name":"Plitzko, Jürgen","first_name":"Jürgen","last_name":"Plitzko"},{"full_name":"Cramer, Patrick","last_name":"Cramer","first_name":"Patrick"}],"extern":"1","page":"551 - 554","issue":"7587","date_updated":"2021-01-12T08:05:43Z","date_created":"2018-12-11T11:47:26Z","date_published":"2016-01-28T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"       529","language":[{"iso":"eng"}],"volume":529,"publication_status":"published","abstract":[{"lang":"eng","text":"RNA polymerase (Pol) II produces messenger RNA during transcription of protein-coding genes in all eukaryotic cells. The Pol II structure is known at high resolution from X-ray crystallography for two yeast species1-3. Structural studies of mammalian Pol II, however, remain limited to low-resolution electron microscopy analysis of human Pol II and its complexes with various proteins4-10. Here we report the 3.4 Å resolution cryo-electron microscopy structure of mammalian Pol II in the form of a transcribing complex comprising DNA template and RNA transcript. We use bovine Pol II, which is identical to the human enzyme except for seven amino-acid residues. The obtained atomic model closely resembles its yeast counterpart, but also reveals unknown features. Binding of nucleic acids to the polymerase involves 'induced fit' of the mobile Pol II clamp and active centre region. DNA downstream of the transcription bubble contacts a conserved 'TPSA motif' in the jaw domain of the Pol II subunit RPB5, an interaction that is apparently already established during transcription initiation7. Upstream DNA emanates from the active centre cleft at an angle of approximately 105° with respect to downstream DNA. This position of upstream DNA allows for binding of the general transcription elongation factor DSIF (SPT4-SPT5) that we localize over the active centre cleft in a conserved position on the clamp domain of Pol II. Our results define the structure of mammalian Pol II in its functional state, indicate that previous crystallographic analysis of yeast Pol II is relevant for understanding gene transcription in all eukaryotes, and provide a starting point for a mechanistic analysis of human transcription."}],"month":"01","article_processing_charge":"No","_id":"602"},{"day":"01","scopus_import":1,"pubrep_id":"584","department":[{"_id":"SyCr"}],"citation":{"ista":"Tartally A, Kelager A, Fürst M, Nash D. 2016. Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon. PeerJ. 2016(3), 1865.","ama":"Tartally A, Kelager A, Fürst M, Nash D. Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon. <i>PeerJ</i>. 2016;2016(3). doi:<a href=\"https://doi.org/10.7717/peerj.1865\">10.7717/peerj.1865</a>","short":"A. Tartally, A. Kelager, M. Fürst, D. Nash, PeerJ 2016 (2016).","apa":"Tartally, A., Kelager, A., Fürst, M., &#38; Nash, D. (2016). Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon. <i>PeerJ</i>. PeerJ. <a href=\"https://doi.org/10.7717/peerj.1865\">https://doi.org/10.7717/peerj.1865</a>","ieee":"A. Tartally, A. Kelager, M. Fürst, and D. Nash, “Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon,” <i>PeerJ</i>, vol. 2016, no. 3. PeerJ, 2016.","chicago":"Tartally, András, Andreas Kelager, Matthias Fürst, and David Nash. “Host Plant Use Drives Genetic Differentiation in Syntopic Populations of Maculinea Alcon.” <i>PeerJ</i>. PeerJ, 2016. <a href=\"https://doi.org/10.7717/peerj.1865\">https://doi.org/10.7717/peerj.1865</a>.","mla":"Tartally, András, et al. “Host Plant Use Drives Genetic Differentiation in Syntopic Populations of Maculinea Alcon.” <i>PeerJ</i>, vol. 2016, no. 3, 1865, PeerJ, 2016, doi:<a href=\"https://doi.org/10.7717/peerj.1865\">10.7717/peerj.1865</a>."},"publication":"PeerJ","oa":1,"abstract":[{"lang":"eng","text":"The rare socially parasitic butterfly Maculinea alcon occurs in two forms, which are characteristic of hygric or xeric habitats and which exploit different host plants and host ants. The status of these two forms has been the subject of considerable controversy. Populations of the two forms are usually spatially distinct, but at Răscruci in Romania both forms occur on the same site (syntopically). We examined the genetic differentiation between the two forms using eight microsatellite markers, and compared with a nearby hygric site, Şardu. Our results showed that while the two forms are strongly differentiated at Răscruci, it is the xeric form there that is most similar to the hygric form at Şardu, and Bayesian clustering algorithms suggest that these two populations have exchanged genes relatively recently. We found strong evidence for population substructuring, caused by high within host ant nest relatedness, indicating very limited dispersal of most ovipositing females, but not association with particular host ant species. Our results are consistent with the results of larger scale phylogeographic studies that suggest that the two forms represent local ecotypes specialising on different host plants, each with a distinct flowering phenology, providing a temporal rather than spatial barrier to gene flow."}],"publication_status":"published","article_number":"1865","date_created":"2018-12-11T11:51:59Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","volume":2016,"intvolume":"      2016","type":"journal_article","author":[{"last_name":"Tartally","first_name":"András","full_name":"Tartally, András"},{"full_name":"Kelager, Andreas","first_name":"Andreas","last_name":"Kelager"},{"orcid":"0000-0002-3712-925X","id":"393B1196-F248-11E8-B48F-1D18A9856A87","full_name":"Fürst, Matthias","last_name":"Fürst","first_name":"Matthias"},{"first_name":"David","last_name":"Nash","full_name":"Nash, David"}],"file_date_updated":"2020-07-14T12:44:53Z","doi":"10.7717/peerj.1865","publisher":"PeerJ","ddc":["570"],"year":"2016","status":"public","title":"Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon","publist_id":"5767","oa_version":"Published Version","has_accepted_license":"1","month":"01","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"1431","issue":"3","file":[{"creator":"system","file_id":"5272","date_created":"2018-12-12T10:17:19Z","date_updated":"2020-07-14T12:44:53Z","file_size":1216360,"content_type":"application/pdf","checksum":"c27d898598a1e3d7f629607a309254e1","access_level":"open_access","relation":"main_file","file_name":"IST-2016-584-v1+1_peerj-1865.pdf"}],"date_updated":"2021-01-12T06:50:41Z","quality_controlled":"1","date_published":"2016-01-01T00:00:00Z","language":[{"iso":"eng"}]},{"publication":"Nature Communications","department":[{"_id":"PeJo"}],"citation":{"apa":"Mishra, R. K., Kim, S., Guzmán, J., &#38; Jonas, P. M. (2016). Symmetric spike timing-dependent plasticity at CA3–CA3 synapses optimizes storage and recall in autoassociative networks. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms11552\">https://doi.org/10.1038/ncomms11552</a>","ieee":"R. K. Mishra, S. Kim, J. Guzmán, and P. M. Jonas, “Symmetric spike timing-dependent plasticity at CA3–CA3 synapses optimizes storage and recall in autoassociative networks,” <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.","chicago":"Mishra, Rajiv Kumar, Sooyun Kim, José Guzmán, and Peter M Jonas. “Symmetric Spike Timing-Dependent Plasticity at CA3–CA3 Synapses Optimizes Storage and Recall in Autoassociative Networks.” <i>Nature Communications</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/ncomms11552\">https://doi.org/10.1038/ncomms11552</a>.","mla":"Mishra, Rajiv Kumar, et al. “Symmetric Spike Timing-Dependent Plasticity at CA3–CA3 Synapses Optimizes Storage and Recall in Autoassociative Networks.” <i>Nature Communications</i>, vol. 7, 11552, Nature Publishing Group, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms11552\">10.1038/ncomms11552</a>.","ista":"Mishra RK, Kim S, Guzmán J, Jonas PM. 2016. Symmetric spike timing-dependent plasticity at CA3–CA3 synapses optimizes storage and recall in autoassociative networks. Nature Communications. 7, 11552.","ama":"Mishra RK, Kim S, Guzmán J, Jonas PM. Symmetric spike timing-dependent plasticity at CA3–CA3 synapses optimizes storage and recall in autoassociative networks. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms11552\">10.1038/ncomms11552</a>","short":"R.K. Mishra, S. Kim, J. Guzmán, P.M. Jonas, Nature Communications 7 (2016)."},"oa":1,"ec_funded":1,"scopus_import":1,"day":"13","pubrep_id":"582","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"1396"}]},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","volume":7,"intvolume":"         7","date_created":"2018-12-11T11:51:59Z","publication_status":"published","abstract":[{"lang":"eng","text":"CA3–CA3 recurrent excitatory synapses are thought to play a key role in memory storage and pattern completion. Whether the plasticity properties of these synapses are consistent with their proposed network functions remains unclear. Here, we examine the properties of spike timing-dependent plasticity (STDP) at CA3–CA3 synapses. Low-frequency pairing of excitatory postsynaptic potentials (EPSPs) and action potentials (APs) induces long-term potentiation (LTP), independent of temporal order. The STDP curve is symmetric and broad (half-width ~150 ms). Consistent with these STDP induction properties, AP–EPSP sequences lead to supralinear summation of spine [Ca2+] transients. Furthermore, afterdepolarizations (ADPs) following APs efficiently propagate into dendrites of CA3 pyramidal neurons, and EPSPs summate with dendritic ADPs. In autoassociative network models, storage and recall are more robust with symmetric than with asymmetric STDP rules. Thus, a specialized STDP induction rule allows reliable storage and recall of information in the hippocampal CA3 network."}],"project":[{"call_identifier":"FWF","grant_number":"P24909-B24","_id":"25C26B1E-B435-11E9-9278-68D0E5697425","name":"Mechanisms of transmitter release at GABAergic synapses"},{"call_identifier":"FP7","_id":"25C0F108-B435-11E9-9278-68D0E5697425","name":"Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons","grant_number":"268548"}],"article_number":"11552","acknowledgement":"We thank Jozsef Csicsvari and Nelson Spruston for critically reading the manuscript. We also thank A. Schlögl for programming, F. Marr for technical assistance and E. Kramberger for manuscript editing. ","title":"Symmetric spike timing-dependent plasticity at CA3–CA3 synapses optimizes storage and recall in autoassociative networks","year":"2016","status":"public","doi":"10.1038/ncomms11552","publisher":"Nature Publishing Group","ddc":["570"],"publist_id":"5766","has_accepted_license":"1","oa_version":"Published Version","type":"journal_article","file_date_updated":"2020-07-14T12:44:53Z","author":[{"first_name":"Rajiv Kumar","last_name":"Mishra","full_name":"Mishra, Rajiv Kumar","id":"46CB58F2-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kim, Sooyun","first_name":"Sooyun","last_name":"Kim","id":"394AB1C8-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0003-2209-5242","full_name":"Guzmán, José","first_name":"José","last_name":"Guzmán","id":"30CC5506-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-5001-4804","full_name":"Jonas, Peter M","first_name":"Peter M","last_name":"Jonas","id":"353C1B58-F248-11E8-B48F-1D18A9856A87"}],"date_updated":"2023-09-07T11:55:25Z","file":[{"file_name":"IST-2016-582-v1+1_ncomms11552.pdf","relation":"main_file","checksum":"7e84d0392348c874d473b62f1042de22","access_level":"open_access","content_type":"application/pdf","file_size":4510512,"date_updated":"2020-07-14T12:44:53Z","date_created":"2018-12-12T10:18:33Z","creator":"system","file_id":"5355"}],"language":[{"iso":"eng"}],"date_published":"2016-05-13T00:00:00Z","quality_controlled":"1","_id":"1432","month":"05","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"date_created":"2018-12-11T11:52:00Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","intvolume":"       271","volume":271,"abstract":[{"text":"We prove that the system of subordination equations, defining the free additive convolution of two probability measures, is stable away from the edges of the support and blow-up singularities by showing that the recent smoothness condition of Kargin is always satisfied. As an application, we consider the local spectral statistics of the random matrix ensemble A+UBU⁎A+UBU⁎, where U is a Haar distributed random unitary or orthogonal matrix, and A and B   are deterministic matrices. In the bulk regime, we prove that the empirical spectral distribution of A+UBU⁎A+UBU⁎ concentrates around the free additive convolution of the spectral distributions of A and B   on scales down to N−2/3N−2/3.","lang":"eng"}],"publication_status":"published","project":[{"call_identifier":"FP7","grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","name":"Random matrices, universality and disordered quantum systems"}],"department":[{"_id":"LaEr"}],"citation":{"apa":"Bao, Z., Erdös, L., &#38; Schnelli, K. (2016). Local stability of the free additive convolution. <i>Journal of Functional Analysis</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">https://doi.org/10.1016/j.jfa.2016.04.006</a>","ieee":"Z. Bao, L. Erdös, and K. Schnelli, “Local stability of the free additive convolution,” <i>Journal of Functional Analysis</i>, vol. 271, no. 3. Academic Press, pp. 672–719, 2016.","mla":"Bao, Zhigang, et al. “Local Stability of the Free Additive Convolution.” <i>Journal of Functional Analysis</i>, vol. 271, no. 3, Academic Press, 2016, pp. 672–719, doi:<a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">10.1016/j.jfa.2016.04.006</a>.","chicago":"Bao, Zhigang, László Erdös, and Kevin Schnelli. “Local Stability of the Free Additive Convolution.” <i>Journal of Functional Analysis</i>. Academic Press, 2016. <a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">https://doi.org/10.1016/j.jfa.2016.04.006</a>.","short":"Z. Bao, L. Erdös, K. Schnelli, Journal of Functional Analysis 271 (2016) 672–719.","ista":"Bao Z, Erdös L, Schnelli K. 2016. Local stability of the free additive convolution. Journal of Functional Analysis. 271(3), 672–719.","ama":"Bao Z, Erdös L, Schnelli K. Local stability of the free additive convolution. <i>Journal of Functional Analysis</i>. 2016;271(3):672-719. doi:<a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">10.1016/j.jfa.2016.04.006</a>"},"publication":"Journal of Functional Analysis","oa":1,"ec_funded":1,"day":"01","scopus_import":1,"issue":"3","page":"672 - 719","date_updated":"2021-01-12T06:50:42Z","quality_controlled":"1","date_published":"2016-08-01T00:00:00Z","language":[{"iso":"eng"}],"month":"08","_id":"1434","doi":"10.1016/j.jfa.2016.04.006","publisher":"Academic Press","status":"public","year":"2016","title":"Local stability of the free additive convolution","publist_id":"5764","oa_version":"Preprint","type":"journal_article","author":[{"orcid":"0000-0003-3036-1475","id":"442E6A6C-F248-11E8-B48F-1D18A9856A87","first_name":"Zhigang","last_name":"Bao","full_name":"Bao, Zhigang"},{"full_name":"Erdös, László","last_name":"Erdös","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603"},{"id":"434AD0AE-F248-11E8-B48F-1D18A9856A87","first_name":"Kevin","last_name":"Schnelli","full_name":"Schnelli, Kevin","orcid":"0000-0003-0954-3231"}],"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1508.05905"}]},{"pubrep_id":"580","scopus_import":1,"day":"01","oa":1,"department":[{"_id":"PeJo"}],"citation":{"ieee":"J. Guzmán and Z. Gerevich, “P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction,” <i>Neural Plasticity</i>, vol. 2016. Hindawi Publishing Corporation, 2016.","apa":"Guzmán, J., &#38; Gerevich, Z. (2016). P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction. <i>Neural Plasticity</i>. Hindawi Publishing Corporation. <a href=\"https://doi.org/10.1155/2016/1207393\">https://doi.org/10.1155/2016/1207393</a>","mla":"Guzmán, José, and Zoltan Gerevich. “P2Y Receptors in Synaptic Transmission and Plasticity: Therapeutic Potential in Cognitive Dysfunction.” <i>Neural Plasticity</i>, vol. 2016, 1207393, Hindawi Publishing Corporation, 2016, doi:<a href=\"https://doi.org/10.1155/2016/1207393\">10.1155/2016/1207393</a>.","chicago":"Guzmán, José, and Zoltan Gerevich. “P2Y Receptors in Synaptic Transmission and Plasticity: Therapeutic Potential in Cognitive Dysfunction.” <i>Neural Plasticity</i>. Hindawi Publishing Corporation, 2016. <a href=\"https://doi.org/10.1155/2016/1207393\">https://doi.org/10.1155/2016/1207393</a>.","short":"J. Guzmán, Z. Gerevich, Neural Plasticity 2016 (2016).","ista":"Guzmán J, Gerevich Z. 2016. P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction. Neural Plasticity. 2016, 1207393.","ama":"Guzmán J, Gerevich Z. P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction. <i>Neural Plasticity</i>. 2016;2016. doi:<a href=\"https://doi.org/10.1155/2016/1207393\">10.1155/2016/1207393</a>"},"publication":"Neural Plasticity","article_number":"1207393","publication_status":"published","abstract":[{"lang":"eng","text":"ATP released from neurons and astrocytes during neuronal activity or under pathophysiological circumstances is able to influence information flow in neuronal circuits by activation of ionotropic P2X and metabotropic P2Y receptors and subsequent modulation of cellular excitability, synaptic strength, and plasticity. In the present paper we review cellular and network effects of P2Y receptors in the brain. We show that P2Y receptors inhibit the release of neurotransmitters, modulate voltage- and ligand-gated ion channels, and differentially influence the induction of synaptic plasticity in the prefrontal cortex, hippocampus, and cerebellum. The findings discussed here may explain how P2Y1 receptor activation during brain injury, hypoxia, inflammation, schizophrenia, or Alzheimer's disease leads to an impairment of cognitive processes. Hence, it is suggested that the blockade of P2Y1 receptors may have therapeutic potential against cognitive disturbances in these states."}],"date_created":"2018-12-11T11:52:00Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","volume":2016,"intvolume":"      2016","author":[{"full_name":"Guzmán, José","last_name":"Guzmán","first_name":"José","id":"30CC5506-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Gerevich","first_name":"Zoltan","full_name":"Gerevich, Zoltan"}],"file_date_updated":"2020-07-14T12:44:54Z","type":"journal_article","has_accepted_license":"1","publist_id":"5762","oa_version":"Published Version","doi":"10.1155/2016/1207393","ddc":["570"],"publisher":"Hindawi Publishing Corporation","status":"public","title":"P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction","year":"2016","month":"01","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"1435","quality_controlled":"1","date_published":"2016-01-01T00:00:00Z","language":[{"iso":"eng"}],"file":[{"file_id":"4740","creator":"system","date_created":"2018-12-12T10:09:17Z","date_updated":"2020-07-14T12:44:54Z","file_size":1395180,"content_type":"application/pdf","checksum":"8dc5c2f3d44d4775a6e7e3edb0d7a0da","access_level":"open_access","relation":"main_file","file_name":"IST-2016-580-v1+1_1207393.pdf"}],"date_updated":"2021-01-12T06:50:43Z"},{"language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2016-01-01T00:00:00Z","date_updated":"2021-01-12T06:50:43Z","issue":"1","page":"1 - 30","file":[{"relation":"main_file","access_level":"open_access","checksum":"c5afe1f6935bc7f2b546adbde1d31a35","file_name":"IST-2016-581-v1+1_1-s2.0-S0021782415001191-main.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:44:54Z","file_size":658491,"creator":"system","file_id":"4825","date_created":"2018-12-12T10:10:36Z"}],"_id":"1436","month":"01","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"oa_version":"Published Version","has_accepted_license":"1","publist_id":"5763","status":"public","year":"2016","title":"Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction","doi":"10.1016/j.matpur.2015.09.003","ddc":["510","530"],"publisher":"Elsevier","file_date_updated":"2020-07-14T12:44:54Z","author":[{"full_name":"Bach, Volker","first_name":"Volker","last_name":"Bach"},{"first_name":"Sébastien","last_name":"Breteaux","full_name":"Breteaux, Sébastien"},{"id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","first_name":"Sören P","last_name":"Petrat","full_name":"Petrat, Sören P","orcid":"0000-0002-9166-5889"},{"full_name":"Pickl, Peter","first_name":"Peter","last_name":"Pickl"},{"last_name":"Tzaneteas","first_name":"Tim","full_name":"Tzaneteas, Tim"}],"type":"journal_article","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","intvolume":"       105","volume":105,"date_created":"2018-12-11T11:52:00Z","project":[{"grant_number":"291734","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"publication_status":"published","abstract":[{"lang":"eng","text":"We study the time evolution of a system of N spinless fermions in R3 which interact through a pair potential, e.g., the Coulomb potential. We compare the dynamics given by the solution to Schrödinger's equation with the time-dependent Hartree-Fock approximation, and we give an estimate for the accuracy of this approximation in terms of the kinetic energy of the system. This leads, in turn, to bounds in terms of the initial total energy of the system."}],"oa":1,"ec_funded":1,"publication":"Journal de Mathématiques Pures et Appliquées","citation":{"short":"V. Bach, S. Breteaux, S.P. Petrat, P. Pickl, T. Tzaneteas, Journal de Mathématiques Pures et Appliquées 105 (2016) 1–30.","ista":"Bach V, Breteaux S, Petrat SP, Pickl P, Tzaneteas T. 2016. Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction. Journal de Mathématiques Pures et Appliquées. 105(1), 1–30.","ama":"Bach V, Breteaux S, Petrat SP, Pickl P, Tzaneteas T. Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction. <i>Journal de Mathématiques Pures et Appliquées</i>. 2016;105(1):1-30. doi:<a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">10.1016/j.matpur.2015.09.003</a>","ieee":"V. Bach, S. Breteaux, S. P. Petrat, P. Pickl, and T. Tzaneteas, “Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction,” <i>Journal de Mathématiques Pures et Appliquées</i>, vol. 105, no. 1. Elsevier, pp. 1–30, 2016.","apa":"Bach, V., Breteaux, S., Petrat, S. P., Pickl, P., &#38; Tzaneteas, T. (2016). Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction. <i>Journal de Mathématiques Pures et Appliquées</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">https://doi.org/10.1016/j.matpur.2015.09.003</a>","mla":"Bach, Volker, et al. “Kinetic Energy Estimates for the Accuracy of the Time-Dependent Hartree-Fock Approximation with Coulomb Interaction.” <i>Journal de Mathématiques Pures et Appliquées</i>, vol. 105, no. 1, Elsevier, 2016, pp. 1–30, doi:<a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">10.1016/j.matpur.2015.09.003</a>.","chicago":"Bach, Volker, Sébastien Breteaux, Sören P Petrat, Peter Pickl, and Tim Tzaneteas. “Kinetic Energy Estimates for the Accuracy of the Time-Dependent Hartree-Fock Approximation with Coulomb Interaction.” <i>Journal de Mathématiques Pures et Appliquées</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">https://doi.org/10.1016/j.matpur.2015.09.003</a>."},"department":[{"_id":"RoSe"}],"pubrep_id":"581","scopus_import":1,"day":"01","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/"}]