[{"date_published":"2016-08-16T00:00:00Z","publication":"Cell Stem Cell","publisher":"Elsevier","day":"16","language":[{"iso":"eng"}],"date_created":"2019-11-28T13:09:09Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":19,"article_type":"original","doi":"10.1016/j.stem.2016.07.003","status":"public","quality_controlled":"1","author":[{"last_name":"Rolando","full_name":"Rolando, Chiara","first_name":"Chiara"},{"first_name":"Andrea","full_name":"Erni, Andrea","last_name":"Erni"},{"last_name":"Grison","first_name":"Alice","full_name":"Grison, Alice"},{"orcid":"0000-0002-8483-8753","full_name":"Beattie, Robert J","first_name":"Robert J","last_name":"Beattie","id":"2E26DF60-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Engler, Anna","first_name":"Anna","last_name":"Engler"},{"first_name":"Paul J.","full_name":"Gokhale, Paul J.","last_name":"Gokhale"},{"full_name":"Milo, Marta","first_name":"Marta","last_name":"Milo"},{"first_name":"Thomas","full_name":"Wegleiter, Thomas","last_name":"Wegleiter"},{"first_name":"Sebastian","full_name":"Jessberger, Sebastian","last_name":"Jessberger"},{"last_name":"Taylor","first_name":"Verdon","full_name":"Taylor, Verdon"}],"extern":"1","citation":{"chicago":"Rolando, Chiara, Andrea Erni, Alice Grison, Robert J Beattie, Anna Engler, Paul J. Gokhale, Marta Milo, Thomas Wegleiter, Sebastian Jessberger, and Verdon Taylor. “Multipotency of Adult Hippocampal NSCs in Vivo Is Restricted by Drosha/NFIB.” <i>Cell Stem Cell</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.stem.2016.07.003\">https://doi.org/10.1016/j.stem.2016.07.003</a>.","apa":"Rolando, C., Erni, A., Grison, A., Beattie, R. J., Engler, A., Gokhale, P. J., … Taylor, V. (2016). Multipotency of adult hippocampal NSCs in vivo is restricted by Drosha/NFIB. <i>Cell Stem Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.stem.2016.07.003\">https://doi.org/10.1016/j.stem.2016.07.003</a>","ama":"Rolando C, Erni A, Grison A, et al. Multipotency of adult hippocampal NSCs in vivo is restricted by Drosha/NFIB. <i>Cell Stem Cell</i>. 2016;19(5):653-662. doi:<a href=\"https://doi.org/10.1016/j.stem.2016.07.003\">10.1016/j.stem.2016.07.003</a>","short":"C. Rolando, A. Erni, A. Grison, R.J. Beattie, A. Engler, P.J. Gokhale, M. Milo, T. Wegleiter, S. Jessberger, V. Taylor, Cell Stem Cell 19 (2016) 653–662.","mla":"Rolando, Chiara, et al. “Multipotency of Adult Hippocampal NSCs in Vivo Is Restricted by Drosha/NFIB.” <i>Cell Stem Cell</i>, vol. 19, no. 5, Elsevier, 2016, pp. 653–62, doi:<a href=\"https://doi.org/10.1016/j.stem.2016.07.003\">10.1016/j.stem.2016.07.003</a>.","ista":"Rolando C, Erni A, Grison A, Beattie RJ, Engler A, Gokhale PJ, Milo M, Wegleiter T, Jessberger S, Taylor V. 2016. Multipotency of adult hippocampal NSCs in vivo is restricted by Drosha/NFIB. Cell Stem Cell. 19(5), 653–662.","ieee":"C. Rolando <i>et al.</i>, “Multipotency of adult hippocampal NSCs in vivo is restricted by Drosha/NFIB,” <i>Cell Stem Cell</i>, vol. 19, no. 5. Elsevier, pp. 653–662, 2016."},"oa_version":"None","publication_identifier":{"issn":["1934-5909"]},"issue":"5","page":"653-662","month":"08","year":"2016","intvolume":"        19","date_updated":"2021-01-12T08:12:00Z","_id":"7141","type":"journal_article","title":"Multipotency of adult hippocampal NSCs in vivo is restricted by Drosha/NFIB","article_processing_charge":"No"},{"arxiv":1,"main_file_link":[{"url":"https://arxiv.org/abs/1711.11518","open_access":"1"}],"type":"journal_article","month":"11","intvolume":"        16","issue":"4","page":"446-453","citation":{"ama":"Mourad E, Coustan L, Lannelongue P, et al. Biredox ionic liquids with solid-like redox density in the liquid state for high-energy supercapacitors. <i>Nature Materials</i>. 2016;16(4):446-453. doi:<a href=\"https://doi.org/10.1038/nmat4808\">10.1038/nmat4808</a>","apa":"Mourad, E., Coustan, L., Lannelongue, P., Zigah, D., Mehdi, A., Vioux, A., … Fontaine, O. (2016). Biredox ionic liquids with solid-like redox density in the liquid state for high-energy supercapacitors. <i>Nature Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nmat4808\">https://doi.org/10.1038/nmat4808</a>","chicago":"Mourad, Eléonore, Laura Coustan, Pierre Lannelongue, Dodzi Zigah, Ahmad Mehdi, André Vioux, Stefan Alexander Freunberger, Frédéric Favier, and Olivier Fontaine. “Biredox Ionic Liquids with Solid-like Redox Density in the Liquid State for High-Energy Supercapacitors.” <i>Nature Materials</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1038/nmat4808\">https://doi.org/10.1038/nmat4808</a>.","ieee":"E. Mourad <i>et al.</i>, “Biredox ionic liquids with solid-like redox density in the liquid state for high-energy supercapacitors,” <i>Nature Materials</i>, vol. 16, no. 4. Springer Nature, pp. 446–453, 2016.","ista":"Mourad E, Coustan L, Lannelongue P, Zigah D, Mehdi A, Vioux A, Freunberger SA, Favier F, Fontaine O. 2016. Biredox ionic liquids with solid-like redox density in the liquid state for high-energy supercapacitors. Nature Materials. 16(4), 446–453.","short":"E. Mourad, L. Coustan, P. Lannelongue, D. Zigah, A. Mehdi, A. Vioux, S.A. Freunberger, F. Favier, O. Fontaine, Nature Materials 16 (2016) 446–453.","mla":"Mourad, Eléonore, et al. “Biredox Ionic Liquids with Solid-like Redox Density in the Liquid State for High-Energy Supercapacitors.” <i>Nature Materials</i>, vol. 16, no. 4, Springer Nature, 2016, pp. 446–53, doi:<a href=\"https://doi.org/10.1038/nmat4808\">10.1038/nmat4808</a>."},"quality_controlled":"1","publication_status":"published","article_type":"original","language":[{"iso":"eng"}],"abstract":[{"text":"Kinetics of electrochemical reactions are several orders of magnitude slower in solids than in liquids as a result of the much lower ion diffusivity. Yet, the solid state maximizes the density of redox species, which is at least two orders of magnitude lower in liquids because of solubility limitations. With regard to electrochemical energy storage devices, this leads to high-energy batteries with limited power and high-power supercapacitors with a well-known energy deficiency. For such devices the ideal system should endow the liquid state with a density of redox species close to the solid state. Here we report an approach based on biredox ionic liquids to achieve bulk-like redox density at liquid-like fast kinetics. The cation and anion of these biredox ionic liquids bear moieties that undergo very fast reversible redox reactions. As a first demonstration of their potential for high-capacity/high-rate charge storage, we used them in redox supercapacitors. These ionic liquids are able to decouple charge storage from an ion-accessible electrode surface, by storing significant charge in the pores of the electrodes, to minimize self-discharge and leakage current as a result of retaining the redox species in the pores, and to raise working voltage due to their wide electrochemical window.","lang":"eng"}],"publication":"Nature Materials","publisher":"Springer Nature","title":"Biredox ionic liquids with solid-like redox density in the liquid state for high-energy supercapacitors","article_processing_charge":"No","_id":"7279","date_updated":"2021-01-12T08:12:43Z","year":"2016","publication_identifier":{"issn":["1476-1122","1476-4660"]},"oa":1,"extern":"1","status":"public","author":[{"last_name":"Mourad","full_name":"Mourad, Eléonore","first_name":"Eléonore"},{"full_name":"Coustan, Laura","first_name":"Laura","last_name":"Coustan"},{"first_name":"Pierre","full_name":"Lannelongue, Pierre","last_name":"Lannelongue"},{"full_name":"Zigah, Dodzi","first_name":"Dodzi","last_name":"Zigah"},{"last_name":"Mehdi","full_name":"Mehdi, Ahmad","first_name":"Ahmad"},{"last_name":"Vioux","full_name":"Vioux, André","first_name":"André"},{"orcid":"0000-0003-2902-5319","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"last_name":"Favier","full_name":"Favier, Frédéric","first_name":"Frédéric"},{"last_name":"Fontaine","first_name":"Olivier","full_name":"Fontaine, Olivier"}],"oa_version":"Preprint","volume":16,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-01-15T07:27:54Z","doi":"10.1038/nmat4808","external_id":{"arxiv":["1711.11518"]},"date_published":"2016-11-28T00:00:00Z","day":"28"},{"day":"21","publisher":"Elsevier","publication":"International Journal of Hydrogen Energy","date_published":"2016-12-21T00:00:00Z","abstract":[{"lang":"eng","text":"If proton exchange membrane fuel cells (PEMFC) are ever to succeed in sustainable energy landscape as a potential zero emission technology, it is inevitable to reduce electricity production cost associated mainly with its MEAs, cell hardware and gas storage units. We demonstrate a diverse strategy for achieving this target with a concomitant amplification of its specific energy and power, by rolling a thin graphene oxide (GO) based MEA alone into a tubular and air breathing architecture with internal fuel storage. The unique properties of GO being a barrier for molecular fuels and proton conducting to construct a GO based cylindrical MEA. This makes the tubular PEMFC ∼75 times lighter, featuring ∼37 and ∼92 times respectively, the power and energy per overall weight, making it a potential candidate for portable applications. The intrinsic electrochemical kinetics at the three-phase boundary are somewhat affected by the bending of the MEA, albeit at overall reduction in power production cost."}],"language":[{"iso":"eng"}],"article_type":"original","doi":"10.1016/j.ijhydene.2016.08.057","volume":41,"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-01-15T12:15:57Z","oa_version":"None","citation":{"apa":"Thimmappa, R., Chattanahalli Devendrachari, M., Shafi, S., Freunberger, S. A., &#38; Ottakam Thotiyl, M. (2016). Proton conducting hollow graphene oxide cylinder as molecular fuel barrier for tubular H2-air fuel cell. <i>International Journal of Hydrogen Energy</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ijhydene.2016.08.057\">https://doi.org/10.1016/j.ijhydene.2016.08.057</a>","chicago":"Thimmappa, Ravikumar, Mruthyunjayachari Chattanahalli Devendrachari, Shahid Shafi, Stefan Alexander Freunberger, and Musthafa Ottakam Thotiyl. “Proton Conducting Hollow Graphene Oxide Cylinder as Molecular Fuel Barrier for Tubular H2-Air Fuel Cell.” <i>International Journal of Hydrogen Energy</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.ijhydene.2016.08.057\">https://doi.org/10.1016/j.ijhydene.2016.08.057</a>.","ama":"Thimmappa R, Chattanahalli Devendrachari M, Shafi S, Freunberger SA, Ottakam Thotiyl M. Proton conducting hollow graphene oxide cylinder as molecular fuel barrier for tubular H2-air fuel cell. <i>International Journal of Hydrogen Energy</i>. 2016;41(47):22305-22315. doi:<a href=\"https://doi.org/10.1016/j.ijhydene.2016.08.057\">10.1016/j.ijhydene.2016.08.057</a>","short":"R. Thimmappa, M. Chattanahalli Devendrachari, S. Shafi, S.A. Freunberger, M. Ottakam Thotiyl, International Journal of Hydrogen Energy 41 (2016) 22305–22315.","mla":"Thimmappa, Ravikumar, et al. “Proton Conducting Hollow Graphene Oxide Cylinder as Molecular Fuel Barrier for Tubular H2-Air Fuel Cell.” <i>International Journal of Hydrogen Energy</i>, vol. 41, no. 47, Elsevier, 2016, pp. 22305–15, doi:<a href=\"https://doi.org/10.1016/j.ijhydene.2016.08.057\">10.1016/j.ijhydene.2016.08.057</a>.","ista":"Thimmappa R, Chattanahalli Devendrachari M, Shafi S, Freunberger SA, Ottakam Thotiyl M. 2016. Proton conducting hollow graphene oxide cylinder as molecular fuel barrier for tubular H2-air fuel cell. International Journal of Hydrogen Energy. 41(47), 22305–22315.","ieee":"R. Thimmappa, M. Chattanahalli Devendrachari, S. Shafi, S. A. Freunberger, and M. Ottakam Thotiyl, “Proton conducting hollow graphene oxide cylinder as molecular fuel barrier for tubular H2-air fuel cell,” <i>International Journal of Hydrogen Energy</i>, vol. 41, no. 47. Elsevier, pp. 22305–22315, 2016."},"extern":"1","author":[{"first_name":"Ravikumar","full_name":"Thimmappa, Ravikumar","last_name":"Thimmappa"},{"last_name":"Chattanahalli Devendrachari","full_name":"Chattanahalli Devendrachari, Mruthyunjayachari","first_name":"Mruthyunjayachari"},{"last_name":"Shafi","full_name":"Shafi, Shahid","first_name":"Shahid"},{"last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander"},{"full_name":"Ottakam Thotiyl, Musthafa","first_name":"Musthafa","last_name":"Ottakam Thotiyl"}],"status":"public","quality_controlled":"1","page":"22305-22315","issue":"47","publication_identifier":{"issn":["0360-3199"]},"year":"2016","intvolume":"        41","month":"12","_id":"7293","type":"journal_article","date_updated":"2021-01-12T08:12:49Z","title":"Proton conducting hollow graphene oxide cylinder as molecular fuel barrier for tubular H2-air fuel cell","article_processing_charge":"No"},{"_id":"7294","type":"journal_article","date_updated":"2021-01-12T08:12:49Z","article_processing_charge":"No","title":"Lithium insertion properties of mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel","page":"270-278","issue":"2","publication_identifier":{"issn":["0928-0707","1573-4846"]},"year":"2016","intvolume":"        79","month":"04","article_type":"original","doi":"10.1007/s10971-016-4037-9","volume":79,"date_created":"2020-01-15T12:16:08Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","oa_version":"None","extern":"1","citation":{"ama":"Escamilla-Pérez AM, Louvain N, Kaschowitz M, et al. Lithium insertion properties of mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel. <i>Journal of Sol-Gel Science and Technology</i>. 2016;79(2):270-278. doi:<a href=\"https://doi.org/10.1007/s10971-016-4037-9\">10.1007/s10971-016-4037-9</a>","apa":"Escamilla-Pérez, A. M., Louvain, N., Kaschowitz, M., Freunberger, S. A., Fontaine, O., Boury, B., … Mutin, P. H. (2016). Lithium insertion properties of mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel. <i>Journal of Sol-Gel Science and Technology</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10971-016-4037-9\">https://doi.org/10.1007/s10971-016-4037-9</a>","chicago":"Escamilla-Pérez, A. M., N. Louvain, M. Kaschowitz, Stefan Alexander Freunberger, O. Fontaine, B. Boury, N. Brun, and P. H. Mutin. “Lithium Insertion Properties of Mesoporous Nanocrystalline TiO2 and TiO2–V2O5 Microspheres Prepared by Non-Hydrolytic Sol–Gel.” <i>Journal of Sol-Gel Science and Technology</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1007/s10971-016-4037-9\">https://doi.org/10.1007/s10971-016-4037-9</a>.","ieee":"A. M. Escamilla-Pérez <i>et al.</i>, “Lithium insertion properties of mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel,” <i>Journal of Sol-Gel Science and Technology</i>, vol. 79, no. 2. Springer Nature, pp. 270–278, 2016.","ista":"Escamilla-Pérez AM, Louvain N, Kaschowitz M, Freunberger SA, Fontaine O, Boury B, Brun N, Mutin PH. 2016. Lithium insertion properties of mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres prepared by non-hydrolytic sol–gel. Journal of Sol-Gel Science and Technology. 79(2), 270–278.","mla":"Escamilla-Pérez, A. M., et al. “Lithium Insertion Properties of Mesoporous Nanocrystalline TiO2 and TiO2–V2O5 Microspheres Prepared by Non-Hydrolytic Sol–Gel.” <i>Journal of Sol-Gel Science and Technology</i>, vol. 79, no. 2, Springer Nature, 2016, pp. 270–78, doi:<a href=\"https://doi.org/10.1007/s10971-016-4037-9\">10.1007/s10971-016-4037-9</a>.","short":"A.M. Escamilla-Pérez, N. Louvain, M. Kaschowitz, S.A. Freunberger, O. Fontaine, B. Boury, N. Brun, P.H. Mutin, Journal of Sol-Gel Science and Technology 79 (2016) 270–278."},"author":[{"last_name":"Escamilla-Pérez","first_name":"A. M.","full_name":"Escamilla-Pérez, A. M."},{"first_name":"N.","full_name":"Louvain, N.","last_name":"Louvain"},{"full_name":"Kaschowitz, M.","first_name":"M.","last_name":"Kaschowitz"},{"full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","last_name":"Freunberger"},{"last_name":"Fontaine","first_name":"O.","full_name":"Fontaine, O."},{"last_name":"Boury","first_name":"B.","full_name":"Boury, B."},{"last_name":"Brun","first_name":"N.","full_name":"Brun, N."},{"first_name":"P. H.","full_name":"Mutin, P. H.","last_name":"Mutin"}],"status":"public","quality_controlled":"1","publisher":"Springer Nature","day":"08","publication":"Journal of Sol-Gel Science and Technology","date_published":"2016-04-08T00:00:00Z","abstract":[{"text":"Mesoporous nanocrystalline TiO2 and TiO2–V2O5 microspheres were prepared by non-hydrolytic sol–gel from TiCl4, VOCl3, and iPr2O at 110 °C without any solvent or additives. The samples were characterized by elemental analysis, X-ray diffraction, Raman spectroscopy, scanning electron microscopy, nitrogen physisorption, and impedance measurements. At low vanadium loadings, only TiO2 anatase was detected, and V2O5 scherbinaite was also detected at high vanadium loadings. The texture of the samples depended on the V loading, but all the samples appeared built of primary nanoparticles (≈10–20 nm in size) that aggregate to form mesoporous micron-sized spheres. The lithium insertion properties of these materials were evaluated by galvanostatic measurements taken using coin-type cells, in view of their application as electrode for rechargeable Li-ion batteries. The mesoporous TiO2 microspheres showed good performances, with a specific reversible capacity of 145 and 128 mAh g−1 at C/2 and C, respectively (C = 335.6 mA g−1), good coulombic efficiency, and a moderate capacity fade (6 %) from the 2nd to the 20th cycle at C/20. Although the addition of V effectively increased the electronic conductivity of the powders, the specific reversible capacity and cycling performances of the TiO2–V2O5 samples were only minimally improved for a 5 at% V loading and were lower at higher V loading.","lang":"eng"}],"language":[{"iso":"eng"}]},{"intvolume":"       206","year":"2016","month":"07","page":"513-523","publication_identifier":{"issn":["0013-4686"]},"issue":"7","article_processing_charge":"No","title":"Biredox ionic liquids: Electrochemical investigation and impact of ion size on electron transfer","date_updated":"2021-01-12T08:12:50Z","type":"journal_article","_id":"7295","abstract":[{"lang":"eng","text":"Redox ionic liquids consisting of ions bearing redox moieties are receiving increasing interest in electrochemical applications, as they associate electroactive properties with the classical properties of ionic liquids. Here, biredox ionic liquid electrolytes are described in which both anion and cation are functionalized with anthraquinone and 2,2,6,6-tetramethylpiperidinyl-1-oxyl (TEMPO) groups, respectively. In-depth investigations based on crossed experimental and theoretical studies were carried out to elucidate how the bulkiness of ions bearing a redox moiety impacted electron and mass transfers, and accordingly the efficiency of electrochemical devices. The values of solvated radii of different redox ions, as well as the related kinetic constants, were extracted from cyclic voltammetry experiments. Reformulating the basic relations of electron transfer theory (based on Marcus-Hush theory) evidenced that in such redox species, with an unsymmetrical located redox centre, the electron transfer was not governed by the overall size of the solvated redox species, but rather by the radius of the redox active subunit, which takes preferential orientation towards the surface, thus allowing higher kinetic constants than what classical theory would predict. This vision opens ample opportunities for biredox ILs as electrolytes in electrochemical devices."}],"language":[{"iso":"eng"}],"day":"10","publisher":"Elsevier","date_published":"2016-07-10T00:00:00Z","publication":"Electrochimica Acta","oa_version":"None","status":"public","quality_controlled":"1","author":[{"last_name":"Mourad","full_name":"Mourad, Eléonore","first_name":"Eléonore"},{"last_name":"Coustan","first_name":"Laura","full_name":"Coustan, Laura"},{"orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"},{"last_name":"Mehdi","first_name":"Ahmad","full_name":"Mehdi, Ahmad"},{"first_name":"André","full_name":"Vioux, André","last_name":"Vioux"},{"full_name":"Favier, Frédérique","first_name":"Frédérique","last_name":"Favier"},{"last_name":"Fontaine","full_name":"Fontaine, Olivier","first_name":"Olivier"}],"extern":"1","citation":{"short":"E. Mourad, L. Coustan, S.A. Freunberger, A. Mehdi, A. Vioux, F. Favier, O. Fontaine, Electrochimica Acta 206 (2016) 513–523.","mla":"Mourad, Eléonore, et al. “Biredox Ionic Liquids: Electrochemical Investigation and Impact of Ion Size on Electron Transfer.” <i>Electrochimica Acta</i>, vol. 206, no. 7, Elsevier, 2016, pp. 513–23, doi:<a href=\"https://doi.org/10.1016/j.electacta.2016.02.211\">10.1016/j.electacta.2016.02.211</a>.","ista":"Mourad E, Coustan L, Freunberger SA, Mehdi A, Vioux A, Favier F, Fontaine O. 2016. Biredox ionic liquids: Electrochemical investigation and impact of ion size on electron transfer. Electrochimica Acta. 206(7), 513–523.","ieee":"E. Mourad <i>et al.</i>, “Biredox ionic liquids: Electrochemical investigation and impact of ion size on electron transfer,” <i>Electrochimica Acta</i>, vol. 206, no. 7. Elsevier, pp. 513–523, 2016.","apa":"Mourad, E., Coustan, L., Freunberger, S. A., Mehdi, A., Vioux, A., Favier, F., &#38; Fontaine, O. (2016). Biredox ionic liquids: Electrochemical investigation and impact of ion size on electron transfer. <i>Electrochimica Acta</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.electacta.2016.02.211\">https://doi.org/10.1016/j.electacta.2016.02.211</a>","chicago":"Mourad, Eléonore, Laura Coustan, Stefan Alexander Freunberger, Ahmad Mehdi, André Vioux, Frédérique Favier, and Olivier Fontaine. “Biredox Ionic Liquids: Electrochemical Investigation and Impact of Ion Size on Electron Transfer.” <i>Electrochimica Acta</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.electacta.2016.02.211\">https://doi.org/10.1016/j.electacta.2016.02.211</a>.","ama":"Mourad E, Coustan L, Freunberger SA, et al. Biredox ionic liquids: Electrochemical investigation and impact of ion size on electron transfer. <i>Electrochimica Acta</i>. 2016;206(7):513-523. doi:<a href=\"https://doi.org/10.1016/j.electacta.2016.02.211\">10.1016/j.electacta.2016.02.211</a>"},"doi":"10.1016/j.electacta.2016.02.211","article_type":"original","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-01-15T12:16:17Z","volume":206},{"date_published":"2016-04-07T00:00:00Z","publication":"Batteries","day":"07","publisher":"MDPI AG","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Within the scope of developing a multi-physical model describing battery behavior during and after the mechanical load (accelerations, intrusions) of a vehicle’s high voltage battery, an internal short circuit model is of deep interest for a virtual hazard assessment. The internal short resistance and the size of the affected area must be known as a minimum for determining the released heat and, in consequence, the temperatures. The internal short resistance of purpose-built dummy pouch cells, filled with electrolyte-like solvent without conductive salt, has thus been measured in a given short area under various compressive loads. The resistances for different short scenarios obtained are analyzed and described in a mathematical form. Short circuit experiments with dummy cells using an external power source have also been carried out. This set-up allows the measurement of the temperature evolution at a known current and a determination of the actual short resistance. The post-mortem analysis of the samples shows a correlation between the maximum temperatures, released short heat and the separator melt diameter."}],"date_created":"2020-01-15T12:16:31Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":2,"article_type":"original","doi":"10.3390/batteries2020008","status":"public","quality_controlled":"1","author":[{"last_name":"Volck","first_name":"Theo","full_name":"Volck, Theo"},{"first_name":"Wolfgang","full_name":"Sinz, Wolfgang","last_name":"Sinz"},{"last_name":"Gstrein","full_name":"Gstrein, Gregor","first_name":"Gregor"},{"last_name":"Breitfuss","first_name":"Christoph","full_name":"Breitfuss, Christoph"},{"last_name":"Heindl","full_name":"Heindl, Simon","first_name":"Simon"},{"last_name":"Steffan","full_name":"Steffan, Hermann","first_name":"Hermann"},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319"},{"last_name":"Wilkening","full_name":"Wilkening, Martin","first_name":"Martin"},{"first_name":"Marlena","full_name":"Uitz, Marlena","last_name":"Uitz"},{"last_name":"Fink","full_name":"Fink, Clemens","first_name":"Clemens"},{"last_name":"Geier","full_name":"Geier, Alexander","first_name":"Alexander"}],"extern":"1","citation":{"short":"T. Volck, W. Sinz, G. Gstrein, C. Breitfuss, S. Heindl, H. Steffan, S.A. Freunberger, M. Wilkening, M. Uitz, C. Fink, A. Geier, Batteries 2 (2016).","mla":"Volck, Theo, et al. “Method for Determination of the Internal Short Resistance and Heat Evolution at Different Mechanical Loads of a Lithium Ion Battery Cell Based on Dummy Pouch Cells.” <i>Batteries</i>, vol. 2, no. 2, 8, MDPI AG, 2016, doi:<a href=\"https://doi.org/10.3390/batteries2020008\">10.3390/batteries2020008</a>.","ieee":"T. Volck <i>et al.</i>, “Method for determination of the internal short resistance and heat evolution at different mechanical loads of a Lithium ion battery cell based on dummy pouch cells,” <i>Batteries</i>, vol. 2, no. 2. MDPI AG, 2016.","ista":"Volck T, Sinz W, Gstrein G, Breitfuss C, Heindl S, Steffan H, Freunberger SA, Wilkening M, Uitz M, Fink C, Geier A. 2016. Method for determination of the internal short resistance and heat evolution at different mechanical loads of a Lithium ion battery cell based on dummy pouch cells. Batteries. 2(2), 8.","chicago":"Volck, Theo, Wolfgang Sinz, Gregor Gstrein, Christoph Breitfuss, Simon Heindl, Hermann Steffan, Stefan Alexander Freunberger, et al. “Method for Determination of the Internal Short Resistance and Heat Evolution at Different Mechanical Loads of a Lithium Ion Battery Cell Based on Dummy Pouch Cells.” <i>Batteries</i>. MDPI AG, 2016. <a href=\"https://doi.org/10.3390/batteries2020008\">https://doi.org/10.3390/batteries2020008</a>.","apa":"Volck, T., Sinz, W., Gstrein, G., Breitfuss, C., Heindl, S., Steffan, H., … Geier, A. (2016). Method for determination of the internal short resistance and heat evolution at different mechanical loads of a Lithium ion battery cell based on dummy pouch cells. <i>Batteries</i>. MDPI AG. <a href=\"https://doi.org/10.3390/batteries2020008\">https://doi.org/10.3390/batteries2020008</a>","ama":"Volck T, Sinz W, Gstrein G, et al. Method for determination of the internal short resistance and heat evolution at different mechanical loads of a Lithium ion battery cell based on dummy pouch cells. <i>Batteries</i>. 2016;2(2). doi:<a href=\"https://doi.org/10.3390/batteries2020008\">10.3390/batteries2020008</a>"},"oa_version":"Published Version","publication_identifier":{"issn":["2313-0105"]},"issue":"2","month":"04","intvolume":"         2","year":"2016","article_number":"8","date_updated":"2021-01-12T08:12:50Z","type":"journal_article","_id":"7296","article_processing_charge":"No","title":"Method for determination of the internal short resistance and heat evolution at different mechanical loads of a Lithium ion battery cell based on dummy pouch cells"},{"ddc":["540","541","547","546"],"type":"journal_article","issue":"6","month":"05","intvolume":"         1","article_number":"16074","publication_status":"published","article_type":"original","quality_controlled":"1","citation":{"mla":"Freunberger, Stefan Alexander. “Batteries: Charging Ahead Rationally.” <i>Nature Energy</i>, vol. 1, no. 6, 16074, Springer Nature, 2016, doi:<a href=\"https://doi.org/10.1038/nenergy.2016.74\">10.1038/nenergy.2016.74</a>.","short":"S.A. Freunberger, Nature Energy 1 (2016).","ieee":"S. A. Freunberger, “Batteries: Charging ahead rationally,” <i>Nature Energy</i>, vol. 1, no. 6. Springer Nature, 2016.","ista":"Freunberger SA. 2016. Batteries: Charging ahead rationally. Nature Energy. 1(6), 16074.","apa":"Freunberger, S. A. (2016). Batteries: Charging ahead rationally. <i>Nature Energy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nenergy.2016.74\">https://doi.org/10.1038/nenergy.2016.74</a>","chicago":"Freunberger, Stefan Alexander. “Batteries: Charging Ahead Rationally.” <i>Nature Energy</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1038/nenergy.2016.74\">https://doi.org/10.1038/nenergy.2016.74</a>.","ama":"Freunberger SA. Batteries: Charging ahead rationally. <i>Nature Energy</i>. 2016;1(6). doi:<a href=\"https://doi.org/10.1038/nenergy.2016.74\">10.1038/nenergy.2016.74</a>"},"file":[{"date_created":"2020-06-29T13:41:56Z","file_size":197375,"file_name":"N&V Freunberger final.pdf","date_updated":"2020-07-14T12:47:55Z","relation":"main_file","file_id":"8047","content_type":"application/pdf","checksum":"d90d675947262f7437b483b251918df2","creator":"sfreunbe","access_level":"open_access"}],"publication":"Nature Energy","file_date_updated":"2020-07-14T12:47:55Z","publisher":"Springer Nature","language":[{"iso":"eng"}],"abstract":[{"text":"Redox mediators facilitate the oxidation of the highly insulating discharge product in metal–oxygen batteries during recharge and offer opportunities to achieve high reversible capacities. Now a design principle for selecting redox mediators that can recharge the batteries more efficiently is suggested.","lang":"eng"}],"date_updated":"2021-01-12T08:12:51Z","_id":"7297","article_processing_charge":"No","title":"Batteries: Charging ahead rationally","publication_identifier":{"issn":["2058-7546"]},"oa":1,"has_accepted_license":"1","year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-01-15T12:16:40Z","volume":1,"doi":"10.1038/nenergy.2016.74","author":[{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","last_name":"Freunberger","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319"}],"status":"public","extern":"1","oa_version":"Submitted Version","date_published":"2016-05-23T00:00:00Z","day":"23"},{"date_updated":"2021-01-12T08:12:51Z","_id":"7298","type":"journal_article","article_processing_charge":"No","title":"Evaluating the trade-off between mechanical and electrochemical performance of separators for lithium-ion batteries: Methodology and application","page":"702-710","publication_identifier":{"issn":["0378-7753"]},"issue":"2","year":"2016","intvolume":"       306","month":"02","doi":"10.1016/j.jpowsour.2015.12.047","article_type":"original","date_created":"2020-01-15T12:16:51Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":306,"oa_version":"None","quality_controlled":"1","author":[{"last_name":"Plaimer","first_name":"Martin","full_name":"Plaimer, Martin"},{"full_name":"Breitfuß, Christoph","first_name":"Christoph","last_name":"Breitfuß"},{"last_name":"Sinz","full_name":"Sinz, Wolfgang","first_name":"Wolfgang"},{"last_name":"Heindl","first_name":"Simon F.","full_name":"Heindl, Simon F."},{"last_name":"Ellersdorfer","first_name":"Christian","full_name":"Ellersdorfer, Christian"},{"last_name":"Steffan","first_name":"Hermann","full_name":"Steffan, Hermann"},{"last_name":"Wilkening","first_name":"Martin","full_name":"Wilkening, Martin"},{"first_name":"Volker","full_name":"Hennige, Volker","last_name":"Hennige"},{"first_name":"Reinhard","full_name":"Tatschl, Reinhard","last_name":"Tatschl"},{"first_name":"Alexander","full_name":"Geier, Alexander","last_name":"Geier"},{"last_name":"Schramm","first_name":"Christian","full_name":"Schramm, Christian"},{"orcid":"0000-0003-2902-5319","full_name":"Freunberger, Stefan Alexander","first_name":"Stefan Alexander","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425"}],"status":"public","citation":{"ieee":"M. Plaimer <i>et al.</i>, “Evaluating the trade-off between mechanical and electrochemical performance of separators for lithium-ion batteries: Methodology and application,” <i>Journal of Power Sources</i>, vol. 306, no. 2. Elsevier, pp. 702–710, 2016.","ista":"Plaimer M, Breitfuß C, Sinz W, Heindl SF, Ellersdorfer C, Steffan H, Wilkening M, Hennige V, Tatschl R, Geier A, Schramm C, Freunberger SA. 2016. Evaluating the trade-off between mechanical and electrochemical performance of separators for lithium-ion batteries: Methodology and application. Journal of Power Sources. 306(2), 702–710.","short":"M. Plaimer, C. Breitfuß, W. Sinz, S.F. Heindl, C. Ellersdorfer, H. Steffan, M. Wilkening, V. Hennige, R. Tatschl, A. Geier, C. Schramm, S.A. Freunberger, Journal of Power Sources 306 (2016) 702–710.","mla":"Plaimer, Martin, et al. “Evaluating the Trade-off between Mechanical and Electrochemical Performance of Separators for Lithium-Ion Batteries: Methodology and Application.” <i>Journal of Power Sources</i>, vol. 306, no. 2, Elsevier, 2016, pp. 702–10, doi:<a href=\"https://doi.org/10.1016/j.jpowsour.2015.12.047\">10.1016/j.jpowsour.2015.12.047</a>.","ama":"Plaimer M, Breitfuß C, Sinz W, et al. Evaluating the trade-off between mechanical and electrochemical performance of separators for lithium-ion batteries: Methodology and application. <i>Journal of Power Sources</i>. 2016;306(2):702-710. doi:<a href=\"https://doi.org/10.1016/j.jpowsour.2015.12.047\">10.1016/j.jpowsour.2015.12.047</a>","apa":"Plaimer, M., Breitfuß, C., Sinz, W., Heindl, S. F., Ellersdorfer, C., Steffan, H., … Freunberger, S. A. (2016). Evaluating the trade-off between mechanical and electrochemical performance of separators for lithium-ion batteries: Methodology and application. <i>Journal of Power Sources</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jpowsour.2015.12.047\">https://doi.org/10.1016/j.jpowsour.2015.12.047</a>","chicago":"Plaimer, Martin, Christoph Breitfuß, Wolfgang Sinz, Simon F. Heindl, Christian Ellersdorfer, Hermann Steffan, Martin Wilkening, et al. “Evaluating the Trade-off between Mechanical and Electrochemical Performance of Separators for Lithium-Ion Batteries: Methodology and Application.” <i>Journal of Power Sources</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.jpowsour.2015.12.047\">https://doi.org/10.1016/j.jpowsour.2015.12.047</a>."},"extern":"1","day":"29","publisher":"Elsevier","date_published":"2016-02-29T00:00:00Z","publication":"Journal of Power Sources","abstract":[{"text":"Lithium-ion batteries are in widespread use in electric vehicles and hybrid vehicles. Besides features like energy density, cost, lifetime, and recyclability the safety of a battery system is of prime importance. The separator material impacts all these properties and requires therefore an informed selection. The interplay between the mechanical and electrochemical properties as key selection criteria is investigated. Mechanical properties were investigated using tensile and puncture penetration tests at abuse relevant conditions. To investigate the electrochemical performance in terms of effective conductivity a method based on impedance spectroscopy was introduced. This methodology is applied to evaluate ten commercial separators which allows for a trade-off analysis of mechanical versus electrochemical performance. Based on the results, and in combination with other factors, this offers an effective approach to select suitable separators for automotive applications.","lang":"eng"}],"language":[{"iso":"eng"}]},{"volume":12,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-03-21T16:08:33Z","doi":"10.1371/journal.pgen.1006252","extern":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"status":"public","author":[{"first_name":"Yong","full_name":"Tang, Yong","last_name":"Tang"},{"full_name":"Zhao, Chun-Yan","first_name":"Chun-Yan","last_name":"Zhao"},{"first_name":"Shutang","full_name":"Tan, Shutang","orcid":"0000-0002-0471-8285","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","last_name":"Tan"},{"last_name":"Xue","first_name":"Hong-Wei","full_name":"Xue, Hong-Wei"}],"oa_version":"Published Version","date_published":"2016-08-16T00:00:00Z","day":"16","_id":"7599","date_updated":"2021-01-12T08:14:25Z","title":"Arabidopsis type II phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through interacting with membrane-bound transcription factor ANAC078","article_processing_charge":"No","publication_identifier":{"issn":["1553-7404"]},"oa":1,"has_accepted_license":"1","year":"2016","publication_status":"published","article_type":"original","citation":{"ama":"Tang Y, Zhao C-Y, Tan S, Xue H-W. Arabidopsis type II phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through interacting with membrane-bound transcription factor ANAC078. <i>PLOS Genetics</i>. 2016;12(8). doi:<a href=\"https://doi.org/10.1371/journal.pgen.1006252\">10.1371/journal.pgen.1006252</a>","chicago":"Tang, Yong, Chun-Yan Zhao, Shutang Tan, and Hong-Wei Xue. “Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.” <i>PLOS Genetics</i>. Public Library of Science, 2016. <a href=\"https://doi.org/10.1371/journal.pgen.1006252\">https://doi.org/10.1371/journal.pgen.1006252</a>.","apa":"Tang, Y., Zhao, C.-Y., Tan, S., &#38; Xue, H.-W. (2016). Arabidopsis type II phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through interacting with membrane-bound transcription factor ANAC078. <i>PLOS Genetics</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1006252\">https://doi.org/10.1371/journal.pgen.1006252</a>","ieee":"Y. Tang, C.-Y. Zhao, S. Tan, and H.-W. Xue, “Arabidopsis type II phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through interacting with membrane-bound transcription factor ANAC078,” <i>PLOS Genetics</i>, vol. 12, no. 8. Public Library of Science, 2016.","ista":"Tang Y, Zhao C-Y, Tan S, Xue H-W. 2016. Arabidopsis type II phosphatidylinositol 4-kinase PI4Kγ5 regulates auxin biosynthesis and leaf margin development through interacting with membrane-bound transcription factor ANAC078. PLOS Genetics. 12(8), e1006252.","mla":"Tang, Yong, et al. “Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.” <i>PLOS Genetics</i>, vol. 12, no. 8, e1006252, Public Library of Science, 2016, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1006252\">10.1371/journal.pgen.1006252</a>.","short":"Y. Tang, C.-Y. Zhao, S. Tan, H.-W. Xue, PLOS Genetics 12 (2016)."},"quality_controlled":"1","publication":"PLOS Genetics","file":[{"date_updated":"2020-07-14T12:48:01Z","file_name":"2016_PlosGenetics_Tang.PDF","file_size":3266119,"date_created":"2020-03-23T12:15:31Z","relation":"main_file","file_id":"7612","access_level":"open_access","creator":"dernst","checksum":"ff0ab9a6bed11cda800a6e59820866a0","content_type":"application/pdf"}],"file_date_updated":"2020-07-14T12:48:01Z","publisher":"Public Library of Science","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Normal leaf margin development is important for leaf morphogenesis and contributes to diverse leaf shapes in higher plants. We here show the crucial roles of an atypical type II phosphatidylinositol 4-kinase, PI4Kγ5, in Arabidopsis leaf margin development. PI4Kγ5 presents a dynamics expression pattern along with leaf development and a T-DNA mutant lacking PI4Kγ5, pi4kγ5–1, presents serrated leaves, which is resulted from the accelerated cell division and increased auxin concentration at serration tips. Studies revealed that PI4Kγ5 interacts with and phosphorylates a membrane-bound NAC transcription factor, ANAC078. Previous studies demonstrated that membrane-bound transcription factors regulate gene transcription by undergoing proteolytic process to translocate into nucleus, and ANAC078 undergoes proteolysis by cleaving off the transmembrane region and carboxyl terminal. Western blot analysis indeed showed that ANAC078 deleting of carboxyl terminal is significantly reduced in pi4kγ5–1, indicating that PI4Kγ5 is important for the cleavage of ANAC078. This is consistent with the subcellular localization observation showing that fluorescence by GFP-ANAC078 is detected at plasma membrane but not nucleus in pi4kγ5–1 mutant and that expression of ANAC078 deleting of carboxyl terminal, driven by PI4Kγ5 promoter, could rescue the leaf serration defects of pi4kγ5–1. Further analysis showed that ANAC078 suppresses the auxin synthesis by directly binding and regulating the expression of auxin synthesis-related genes. These results indicate that PI4Kγ5 interacts with ANAC078 to negatively regulate auxin synthesis and hence influences cell proliferation and leaf development, providing informative clues for the regulation of in situ auxin synthesis and cell division, as well as the cleavage and functional mechanism of membrane-bound transcription factors."}],"type":"journal_article","ddc":["580"],"issue":"8","month":"08","article_number":"e1006252","intvolume":"        12"},{"abstract":[{"text":"Importance: Considerable partner resemblances have been found for a wide range of psychiatric disorders, meaning that partners of affected individuals have an increased risk of being affected compared with partners of unaffected individuals. If this resemblance is reflected in genetic similarity between partners, genetic risk is anticipated to accumulate in offspring, but these potential consequences have not been quantified and have been left implicit.\r\n\r\nObservations: The anticipated consequences of partner resemblance on prevalence and heritability of psychiatric traits in the offspring generation were modeled for disorders with varying heritabilities, population prevalence (lifetime risk), and magnitudes of partner resemblance. These models facilitate interpretation for a wide range of psychiatric disorders, such as autism, schizophrenia, and depression. The genetic consequences of partner resemblance are most pronounced when attributable to phenotypic assortment (driven by the psychiatric trait). Phenotypic assortment results in increased genetic variance in the offspring generation, which may result in increased heritability and population prevalence. These consequences add generation after generation to a limit, but assortative mating is unlikely to balance the impact of reduced fecundity of patients with psychiatric disorders in the long term. This modeling suggests that the heritabilities of psychiatric disorders are unlikely to increase by more than 5% from 1 generation of assortative mating (maximally 13% across multiple generations). The population prevalence will increase most for less common disorders with high heritability; for example, the prevalence of autism might increase by 1.5-fold after 1 generation of assortative mating (≥2.4-fold in the long term) depending on several assumptions.\r\n\r\nConclusions and Relevance: The considerable partner resemblances found for psychiatric disorders deserve more detailed interpretation than has been provided thus far. Although the limitations of modeling are emphasized, the anticipated consequences are at most modest for the heritability but may be considerable for the population prevalence of rare disorders with a high heritability.","lang":"eng"}],"language":[{"iso":"eng"}],"day":"01","publisher":"American Medical Association","date_published":"2016-11-01T00:00:00Z","publication":"JAMA Psychiatry","oa_version":"None","author":[{"full_name":"Peyrot, Wouter J.","first_name":"Wouter J.","last_name":"Peyrot"},{"last_name":"Robinson","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","orcid":"0000-0001-8982-8813","full_name":"Robinson, Matthew Richard","first_name":"Matthew Richard"},{"full_name":"Penninx, Brenda W. J. H.","first_name":"Brenda W. J. H.","last_name":"Penninx"},{"last_name":"Wray","first_name":"Naomi R.","full_name":"Wray, Naomi R."}],"quality_controlled":"1","status":"public","extern":"1","citation":{"ama":"Peyrot WJ, Robinson MR, Penninx BWJH, Wray NR. Exploring boundaries for the genetic consequences of assortative mating for psychiatric traits. <i>JAMA Psychiatry</i>. 2016;73(11):1189-1195. doi:<a href=\"https://doi.org/10.1001/jamapsychiatry.2016.2566\">10.1001/jamapsychiatry.2016.2566</a>","apa":"Peyrot, W. J., Robinson, M. R., Penninx, B. W. J. H., &#38; Wray, N. R. (2016). Exploring boundaries for the genetic consequences of assortative mating for psychiatric traits. <i>JAMA Psychiatry</i>. American Medical Association. <a href=\"https://doi.org/10.1001/jamapsychiatry.2016.2566\">https://doi.org/10.1001/jamapsychiatry.2016.2566</a>","chicago":"Peyrot, Wouter J., Matthew Richard Robinson, Brenda W. J. H. Penninx, and Naomi R. Wray. “Exploring Boundaries for the Genetic Consequences of Assortative Mating for Psychiatric Traits.” <i>JAMA Psychiatry</i>. American Medical Association, 2016. <a href=\"https://doi.org/10.1001/jamapsychiatry.2016.2566\">https://doi.org/10.1001/jamapsychiatry.2016.2566</a>.","ieee":"W. J. Peyrot, M. R. Robinson, B. W. J. H. Penninx, and N. R. Wray, “Exploring boundaries for the genetic consequences of assortative mating for psychiatric traits,” <i>JAMA Psychiatry</i>, vol. 73, no. 11. American Medical Association, pp. 1189–1195, 2016.","ista":"Peyrot WJ, Robinson MR, Penninx BWJH, Wray NR. 2016. Exploring boundaries for the genetic consequences of assortative mating for psychiatric traits. JAMA Psychiatry. 73(11), 1189–1195.","short":"W.J. Peyrot, M.R. Robinson, B.W.J.H. Penninx, N.R. Wray, JAMA Psychiatry 73 (2016) 1189–1195.","mla":"Peyrot, Wouter J., et al. “Exploring Boundaries for the Genetic Consequences of Assortative Mating for Psychiatric Traits.” <i>JAMA Psychiatry</i>, vol. 73, no. 11, American Medical Association, 2016, pp. 1189–95, doi:<a href=\"https://doi.org/10.1001/jamapsychiatry.2016.2566\">10.1001/jamapsychiatry.2016.2566</a>."},"article_type":"original","doi":"10.1001/jamapsychiatry.2016.2566","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-04-30T10:48:41Z","volume":73,"year":"2016","intvolume":"        73","month":"11","page":"1189-1195","publication_identifier":{"issn":["2168-622X"]},"issue":"11","article_processing_charge":"No","title":"Exploring boundaries for the genetic consequences of assortative mating for psychiatric traits","date_updated":"2021-01-12T08:15:11Z","_id":"7734","type":"journal_article"},{"page":"51-61","publication_identifier":{"issn":["0018-067X","1365-2540"]},"intvolume":"       117","year":"2016","month":"05","date_updated":"2021-01-12T08:15:11Z","type":"journal_article","_id":"7736","title":"EigenGWAS: Finding loci under selection through genome-wide association studies of eigenvectors in structured populations","article_processing_charge":"No","publisher":"Springer Nature","day":"04","date_published":"2016-05-04T00:00:00Z","publication":"Heredity","abstract":[{"text":"We develop a novel approach to identify regions of the genome underlying population genetic differentiation in any genetic data where the underlying population structure is unknown, or where the interest is assessing divergence along a gradient. By combining the statistical framework for genome-wide association studies (GWASs) with eigenvector decomposition (EigenGWAS), which is commonly used in population genetics to characterize the structure of genetic data, loci under selection can be identified without a requirement for discrete populations. We show through theory and simulation that our approach can identify regions under selection along gradients of ancestry, and in real data we confirm this by demonstrating LCT to be under selection between HapMap CEU–TSI cohorts, and we then validate this selection signal across European countries in the POPRES samples. HERC2 was also found to be differentiated between both the CEU–TSI cohort and within the POPRES sample, reflecting the likely anthropological differences in skin and hair colour between northern and southern European populations. Controlling for population stratification is of great importance in any quantitative genetic study and our approach also provides a simple, fast and accurate way of predicting principal components in independent samples. With ever increasing sample sizes across many fields, this approach is likely to be greatly utilized to gain individual-level eigenvectors avoiding the computational challenges associated with conducting singular value decomposition in large data sets. We have developed freely available software, Genetic Analysis Repository (GEAR), to facilitate the application of the methods.","lang":"eng"}],"language":[{"iso":"eng"}],"article_type":"original","doi":"10.1038/hdy.2016.25","publication_status":"published","date_created":"2020-04-30T10:50:03Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":117,"oa_version":"None","quality_controlled":"1","status":"public","author":[{"last_name":"Chen","first_name":"G-B","full_name":"Chen, G-B"},{"last_name":"Lee","full_name":"Lee, S H","first_name":"S H"},{"full_name":"Zhu, Z-X","first_name":"Z-X","last_name":"Zhu"},{"full_name":"Benyamin, B","first_name":"B","last_name":"Benyamin"},{"first_name":"Matthew Richard","full_name":"Robinson, Matthew Richard","orcid":"0000-0001-8982-8813","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","last_name":"Robinson"}],"extern":"1","citation":{"ieee":"G.-B. Chen, S. H. Lee, Z.-X. Zhu, B. Benyamin, and M. R. Robinson, “EigenGWAS: Finding loci under selection through genome-wide association studies of eigenvectors in structured populations,” <i>Heredity</i>, vol. 117. Springer Nature, pp. 51–61, 2016.","ista":"Chen G-B, Lee SH, Zhu Z-X, Benyamin B, Robinson MR. 2016. EigenGWAS: Finding loci under selection through genome-wide association studies of eigenvectors in structured populations. Heredity. 117, 51–61.","mla":"Chen, G. B., et al. “EigenGWAS: Finding Loci under Selection through Genome-Wide Association Studies of Eigenvectors in Structured Populations.” <i>Heredity</i>, vol. 117, Springer Nature, 2016, pp. 51–61, doi:<a href=\"https://doi.org/10.1038/hdy.2016.25\">10.1038/hdy.2016.25</a>.","short":"G.-B. Chen, S.H. Lee, Z.-X. Zhu, B. Benyamin, M.R. Robinson, Heredity 117 (2016) 51–61.","ama":"Chen G-B, Lee SH, Zhu Z-X, Benyamin B, Robinson MR. EigenGWAS: Finding loci under selection through genome-wide association studies of eigenvectors in structured populations. <i>Heredity</i>. 2016;117:51-61. doi:<a href=\"https://doi.org/10.1038/hdy.2016.25\">10.1038/hdy.2016.25</a>","apa":"Chen, G.-B., Lee, S. H., Zhu, Z.-X., Benyamin, B., &#38; Robinson, M. R. (2016). EigenGWAS: Finding loci under selection through genome-wide association studies of eigenvectors in structured populations. <i>Heredity</i>. Springer Nature. <a href=\"https://doi.org/10.1038/hdy.2016.25\">https://doi.org/10.1038/hdy.2016.25</a>","chicago":"Chen, G-B, S H Lee, Z-X Zhu, B Benyamin, and Matthew Richard Robinson. “EigenGWAS: Finding Loci under Selection through Genome-Wide Association Studies of Eigenvectors in Structured Populations.” <i>Heredity</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1038/hdy.2016.25\">https://doi.org/10.1038/hdy.2016.25</a>."}},{"issue":"5","page":"481-487","month":"03","intvolume":"        48","type":"journal_article","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/ng.3538"}],"publication":"Nature Genetics","publisher":"Springer Nature","language":[{"iso":"eng"}],"abstract":[{"text":"Genome-wide association studies (GWAS) have identified thousands of genetic variants associated with human complex traits. However, the genes or functional DNA elements through which these variants exert their effects on the traits are often unknown. We propose a method (called SMR) that integrates summary-level data from GWAS with data from expression quantitative trait locus (eQTL) studies to identify genes whose expression levels are associated with a complex trait because of pleiotropy. We apply the method to five human complex traits using GWAS data on up to 339,224 individuals and eQTL data on 5,311 individuals, and we prioritize 126 genes (for example, TRAF1 and ANKRD55 for rheumatoid arthritis and SNX19 and NMRAL1 for schizophrenia), of which 25 genes are new candidates; 77 genes are not the nearest annotated gene to the top associated GWAS SNP. These genes provide important leads to design future functional studies to understand the mechanism whereby DNA variation leads to complex trait variation.","lang":"eng"}],"publication_status":"published","article_type":"original","quality_controlled":"1","citation":{"ama":"Zhu Z, Zhang F, Hu H, et al. Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets. <i>Nature Genetics</i>. 2016;48(5):481-487. doi:<a href=\"https://doi.org/10.1038/ng.3538\">10.1038/ng.3538</a>","apa":"Zhu, Z., Zhang, F., Hu, H., Bakshi, A., Robinson, M. R., Powell, J. E., … Yang, J. (2016). Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets. <i>Nature Genetics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ng.3538\">https://doi.org/10.1038/ng.3538</a>","chicago":"Zhu, Zhihong, Futao Zhang, Han Hu, Andrew Bakshi, Matthew Richard Robinson, Joseph E Powell, Grant W Montgomery, et al. “Integration of Summary Data from GWAS and EQTL Studies Predicts Complex Trait Gene Targets.” <i>Nature Genetics</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1038/ng.3538\">https://doi.org/10.1038/ng.3538</a>.","ista":"Zhu Z, Zhang F, Hu H, Bakshi A, Robinson MR, Powell JE, Montgomery GW, Goddard ME, Wray NR, Visscher PM, Yang J. 2016. Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets. Nature Genetics. 48(5), 481–487.","ieee":"Z. Zhu <i>et al.</i>, “Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets,” <i>Nature Genetics</i>, vol. 48, no. 5. Springer Nature, pp. 481–487, 2016.","mla":"Zhu, Zhihong, et al. “Integration of Summary Data from GWAS and EQTL Studies Predicts Complex Trait Gene Targets.” <i>Nature Genetics</i>, vol. 48, no. 5, Springer Nature, 2016, pp. 481–87, doi:<a href=\"https://doi.org/10.1038/ng.3538\">10.1038/ng.3538</a>.","short":"Z. Zhu, F. Zhang, H. Hu, A. Bakshi, M.R. Robinson, J.E. Powell, G.W. Montgomery, M.E. Goddard, N.R. Wray, P.M. Visscher, J. Yang, Nature Genetics 48 (2016) 481–487."},"publication_identifier":{"issn":["1061-4036","1546-1718"]},"oa":1,"year":"2016","date_updated":"2021-01-12T08:15:11Z","_id":"7737","title":"Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets","article_processing_charge":"No","date_published":"2016-03-28T00:00:00Z","day":"28","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-04-30T10:50:26Z","volume":48,"doi":"10.1038/ng.3538","author":[{"last_name":"Zhu","full_name":"Zhu, Zhihong","first_name":"Zhihong"},{"full_name":"Zhang, Futao","first_name":"Futao","last_name":"Zhang"},{"last_name":"Hu","first_name":"Han","full_name":"Hu, Han"},{"last_name":"Bakshi","full_name":"Bakshi, Andrew","first_name":"Andrew"},{"orcid":"0000-0001-8982-8813","full_name":"Robinson, Matthew Richard","first_name":"Matthew Richard","last_name":"Robinson","id":"E5D42276-F5DA-11E9-8E24-6303E6697425"},{"first_name":"Joseph E","full_name":"Powell, Joseph E","last_name":"Powell"},{"last_name":"Montgomery","full_name":"Montgomery, Grant W","first_name":"Grant W"},{"first_name":"Michael E","full_name":"Goddard, Michael E","last_name":"Goddard"},{"full_name":"Wray, Naomi R","first_name":"Naomi R","last_name":"Wray"},{"last_name":"Visscher","full_name":"Visscher, Peter M","first_name":"Peter M"},{"last_name":"Yang","first_name":"Jian","full_name":"Yang, Jian"}],"status":"public","extern":"1","oa_version":"Published Version"},{"date_published":"2016-08-30T00:00:00Z","publication":"Proceedings of the National Academy of Sciences","publisher":"Proceedings of the National Academy of Sciences","day":"30","language":[{"iso":"eng"}],"abstract":[{"text":"We propose a Widom-like scaling ansatz for the critical jamming transition. Our ansatz for the elastic energy shows that the scaling of the energy, compressive strain, shear strain, system size, pressure, shear stress, bulk modulus, and shear modulus are all related to each other via scaling relations, with only three independent scaling exponents. We extract the values of these exponents from already known numerical or theoretical results, and we numerically verify the resulting predictions of the scaling theory for the energy and residual shear stress. We also derive a scaling relation between pressure and residual shear stress that yields insight into why the shear and bulk moduli scale differently. Our theory shows that the jamming transition exhibits an emergent scale invariance, setting the stage for the potential development of a renormalization group theory for jamming.","lang":"eng"}],"date_created":"2020-04-30T11:39:53Z","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":113,"article_type":"original","doi":"10.1073/pnas.1601858113","status":"public","author":[{"last_name":"Goodrich","id":"EB352CD2-F68A-11E9-89C5-A432E6697425","orcid":"0000-0002-1307-5074","full_name":"Goodrich, Carl Peter","first_name":"Carl Peter"},{"last_name":"Liu","first_name":"Andrea J.","full_name":"Liu, Andrea J."},{"first_name":"James P.","full_name":"Sethna, James P.","last_name":"Sethna"}],"quality_controlled":"1","citation":{"apa":"Goodrich, C. P., Liu, A. J., &#38; Sethna, J. P. (2016). Scaling ansatz for the jamming transition. <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1601858113\">https://doi.org/10.1073/pnas.1601858113</a>","chicago":"Goodrich, Carl Peter, Andrea J. Liu, and James P. Sethna. “Scaling Ansatz for the Jamming Transition.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2016. <a href=\"https://doi.org/10.1073/pnas.1601858113\">https://doi.org/10.1073/pnas.1601858113</a>.","ama":"Goodrich CP, Liu AJ, Sethna JP. Scaling ansatz for the jamming transition. <i>Proceedings of the National Academy of Sciences</i>. 2016;113(35):9745-9750. doi:<a href=\"https://doi.org/10.1073/pnas.1601858113\">10.1073/pnas.1601858113</a>","mla":"Goodrich, Carl Peter, et al. “Scaling Ansatz for the Jamming Transition.” <i>Proceedings of the National Academy of Sciences</i>, vol. 113, no. 35, Proceedings of the National Academy of Sciences, 2016, pp. 9745–50, doi:<a href=\"https://doi.org/10.1073/pnas.1601858113\">10.1073/pnas.1601858113</a>.","short":"C.P. Goodrich, A.J. Liu, J.P. Sethna, Proceedings of the National Academy of Sciences 113 (2016) 9745–9750.","ieee":"C. P. Goodrich, A. J. Liu, and J. P. Sethna, “Scaling ansatz for the jamming transition,” <i>Proceedings of the National Academy of Sciences</i>, vol. 113, no. 35. Proceedings of the National Academy of Sciences, pp. 9745–9750, 2016.","ista":"Goodrich CP, Liu AJ, Sethna JP. 2016. Scaling ansatz for the jamming transition. Proceedings of the National Academy of Sciences. 113(35), 9745–9750."},"extern":"1","oa_version":"None","publication_identifier":{"issn":["0027-8424","1091-6490"]},"issue":"35","page":"9745-9750","month":"08","intvolume":"       113","year":"2016","date_updated":"2021-01-12T08:15:21Z","_id":"7760","type":"journal_article","article_processing_charge":"No","title":"Scaling ansatz for the jamming transition"},{"month":"06","intvolume":"       116","year":"2016","article_number":"235501","publication_identifier":{"issn":["0031-9007","1079-7114"]},"issue":"23","article_processing_charge":"No","title":"Pinning susceptibility: The effect of dilute, quenched disorder on jamming","date_updated":"2021-01-12T08:15:21Z","_id":"7761","type":"journal_article","language":[{"iso":"eng"}],"abstract":[{"text":"We study the effect of dilute pinning on the jamming transition. Pinning reduces the average contact number needed to jam unpinned particles and shifts the jamming threshold to lower densities, leading to a pinning susceptibility, χp. Our main results are that this susceptibility obeys scaling form and diverges in the thermodynamic limit as χp∝|ϕ−ϕ∞c|−γp where ϕ∞c is the jamming threshold in the absence of pins. Finite-size scaling arguments yield these values with associated statistical (systematic) errors γp=1.018±0.026(0.291) in d=2 and γp=1.534±0.120(0.822) in d=3. Logarithmic corrections raise the exponent in d=2 to close to the d=3 value, although the systematic errors are very large.","lang":"eng"}],"date_published":"2016-06-10T00:00:00Z","publication":"Physical Review Letters","publisher":"American Physical Society","day":"10","author":[{"full_name":"Graves, Amy L.","first_name":"Amy L.","last_name":"Graves"},{"last_name":"Nashed","full_name":"Nashed, Samer","first_name":"Samer"},{"last_name":"Padgett","first_name":"Elliot","full_name":"Padgett, Elliot"},{"last_name":"Goodrich","id":"EB352CD2-F68A-11E9-89C5-A432E6697425","orcid":"0000-0002-1307-5074","first_name":"Carl Peter","full_name":"Goodrich, Carl Peter"},{"full_name":"Liu, Andrea J.","first_name":"Andrea J.","last_name":"Liu"},{"full_name":"Sethna, James P.","first_name":"James P.","last_name":"Sethna"}],"status":"public","quality_controlled":"1","citation":{"short":"A.L. Graves, S. Nashed, E. Padgett, C.P. Goodrich, A.J. Liu, J.P. Sethna, Physical Review Letters 116 (2016).","mla":"Graves, Amy L., et al. “Pinning Susceptibility: The Effect of Dilute, Quenched Disorder on Jamming.” <i>Physical Review Letters</i>, vol. 116, no. 23, 235501, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/physrevlett.116.235501\">10.1103/physrevlett.116.235501</a>.","ieee":"A. L. Graves, S. Nashed, E. Padgett, C. P. Goodrich, A. J. Liu, and J. P. Sethna, “Pinning susceptibility: The effect of dilute, quenched disorder on jamming,” <i>Physical Review Letters</i>, vol. 116, no. 23. American Physical Society, 2016.","ista":"Graves AL, Nashed S, Padgett E, Goodrich CP, Liu AJ, Sethna JP. 2016. Pinning susceptibility: The effect of dilute, quenched disorder on jamming. Physical Review Letters. 116(23), 235501.","apa":"Graves, A. L., Nashed, S., Padgett, E., Goodrich, C. P., Liu, A. J., &#38; Sethna, J. P. (2016). Pinning susceptibility: The effect of dilute, quenched disorder on jamming. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.116.235501\">https://doi.org/10.1103/physrevlett.116.235501</a>","chicago":"Graves, Amy L., Samer Nashed, Elliot Padgett, Carl Peter Goodrich, Andrea J. Liu, and James P. Sethna. “Pinning Susceptibility: The Effect of Dilute, Quenched Disorder on Jamming.” <i>Physical Review Letters</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/physrevlett.116.235501\">https://doi.org/10.1103/physrevlett.116.235501</a>.","ama":"Graves AL, Nashed S, Padgett E, Goodrich CP, Liu AJ, Sethna JP. Pinning susceptibility: The effect of dilute, quenched disorder on jamming. <i>Physical Review Letters</i>. 2016;116(23). doi:<a href=\"https://doi.org/10.1103/physrevlett.116.235501\">10.1103/physrevlett.116.235501</a>"},"extern":"1","oa_version":"None","date_created":"2020-04-30T11:40:10Z","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":116,"article_type":"original","doi":"10.1103/physrevlett.116.235501"},{"_id":"7762","type":"journal_article","date_updated":"2021-01-12T08:15:22Z","title":"Divergence of Voronoi cell anisotropy vector: A threshold-free characterization of local structure in amorphous materials","article_processing_charge":"No","issue":"8","publication_identifier":{"issn":["0031-9007","1079-7114"]},"month":"02","article_number":"088001 ","year":"2016","intvolume":"       116","volume":116,"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-04-30T11:40:25Z","doi":"10.1103/physrevlett.116.088001","article_type":"original","citation":{"ieee":"J. M. Rieser, C. P. Goodrich, A. J. Liu, and D. J. Durian, “Divergence of Voronoi cell anisotropy vector: A threshold-free characterization of local structure in amorphous materials,” <i>Physical Review Letters</i>, vol. 116, no. 8. American Physical Society, 2016.","ista":"Rieser JM, Goodrich CP, Liu AJ, Durian DJ. 2016. Divergence of Voronoi cell anisotropy vector: A threshold-free characterization of local structure in amorphous materials. Physical Review Letters. 116(8), 088001.","mla":"Rieser, Jennifer M., et al. “Divergence of Voronoi Cell Anisotropy Vector: A Threshold-Free Characterization of Local Structure in Amorphous Materials.” <i>Physical Review Letters</i>, vol. 116, no. 8, 088001, American Physical Society, 2016, doi:<a href=\"https://doi.org/10.1103/physrevlett.116.088001\">10.1103/physrevlett.116.088001</a>.","short":"J.M. Rieser, C.P. Goodrich, A.J. Liu, D.J. Durian, Physical Review Letters 116 (2016).","ama":"Rieser JM, Goodrich CP, Liu AJ, Durian DJ. Divergence of Voronoi cell anisotropy vector: A threshold-free characterization of local structure in amorphous materials. <i>Physical Review Letters</i>. 2016;116(8). doi:<a href=\"https://doi.org/10.1103/physrevlett.116.088001\">10.1103/physrevlett.116.088001</a>","chicago":"Rieser, Jennifer M., Carl Peter Goodrich, Andrea J. Liu, and Douglas J. Durian. “Divergence of Voronoi Cell Anisotropy Vector: A Threshold-Free Characterization of Local Structure in Amorphous Materials.” <i>Physical Review Letters</i>. American Physical Society, 2016. <a href=\"https://doi.org/10.1103/physrevlett.116.088001\">https://doi.org/10.1103/physrevlett.116.088001</a>.","apa":"Rieser, J. M., Goodrich, C. P., Liu, A. J., &#38; Durian, D. J. (2016). Divergence of Voronoi cell anisotropy vector: A threshold-free characterization of local structure in amorphous materials. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.116.088001\">https://doi.org/10.1103/physrevlett.116.088001</a>"},"extern":"1","author":[{"last_name":"Rieser","full_name":"Rieser, Jennifer M.","first_name":"Jennifer M."},{"id":"EB352CD2-F68A-11E9-89C5-A432E6697425","last_name":"Goodrich","first_name":"Carl Peter","full_name":"Goodrich, Carl Peter","orcid":"0000-0002-1307-5074"},{"full_name":"Liu, Andrea J.","first_name":"Andrea J.","last_name":"Liu"},{"full_name":"Durian, Douglas J.","first_name":"Douglas J.","last_name":"Durian"}],"status":"public","quality_controlled":"1","oa_version":"None","publication":"Physical Review Letters","date_published":"2016-02-23T00:00:00Z","day":"23","publisher":"American Physical Society","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Characterizing structural inhomogeneity is an essential step in understanding the mechanical response of amorphous materials. We introduce a threshold-free measure based on the field of vectors pointing from the center of each particle to the centroid of the Voronoi cell in which the particle resides. These vectors tend to point in toward regions of high free volume and away from regions of low free volume, reminiscent of sinks and sources in a vector field. We compute the local divergence of these vectors, where positive values correspond to overpacked regions and negative values identify underpacked regions within the material. Distributions of this divergence are nearly Gaussian with zero mean, allowing for structural characterization using only the moments of the distribution. We explore how the standard deviation and skewness vary with the packing fraction for simulations of bidisperse systems and find a kink in these moments that coincides with the jamming transition."}]},{"language":[{"iso":"eng"}],"abstract":[{"text":"An orthogonal wavelet basis is characterized by its approximation order, which relates to the ability of the basis to represent general smooth functions on a given scale. It is known, though perhaps not widely known, that there are ways of exceeding the approximation order, i.e., achieving higher-order error in the discretized wavelet transform and its inverse. The focus here is on the development of a practical formulation to accomplish this first for 1D smooth functions, then for 1D functions with discontinuities and then for multidimensional (here 2D) functions with discontinuities. It is shown how to transcend both the wavelet approximation order and the 2D Gibbs phenomenon in representing electromagnetic fields at discontinuous dielectric interfaces that do not simply follow the wavelet-basis grid.","lang":"eng"}],"date_published":"2016-01-15T00:00:00Z","publication":"Journal of Computational Physics","publisher":"Elsevier","day":"15","status":"public","author":[{"first_name":"Richard","full_name":"Lombardini, Richard","last_name":"Lombardini"},{"last_name":"Acevedo","first_name":"Ramiro","full_name":"Acevedo, Ramiro"},{"full_name":"Kuczala, Alexander","first_name":"Alexander","last_name":"Kuczala"},{"first_name":"Kerry P.","full_name":"Keys, Kerry P.","last_name":"Keys"},{"orcid":"0000-0002-1307-5074","full_name":"Goodrich, Carl Peter","first_name":"Carl Peter","last_name":"Goodrich","id":"EB352CD2-F68A-11E9-89C5-A432E6697425"},{"first_name":"Bruce R.","full_name":"Johnson, Bruce R.","last_name":"Johnson"}],"quality_controlled":"1","extern":"1","citation":{"mla":"Lombardini, Richard, et al. “Higher-Order Wavelet Reconstruction/Differentiation Filters and Gibbs Phenomena.” <i>Journal of Computational Physics</i>, vol. 305, Elsevier, 2016, pp. 244–62, doi:<a href=\"https://doi.org/10.1016/j.jcp.2015.10.035\">10.1016/j.jcp.2015.10.035</a>.","short":"R. Lombardini, R. Acevedo, A. Kuczala, K.P. Keys, C.P. Goodrich, B.R. Johnson, Journal of Computational Physics 305 (2016) 244–262.","ieee":"R. Lombardini, R. Acevedo, A. Kuczala, K. P. Keys, C. P. Goodrich, and B. R. Johnson, “Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena,” <i>Journal of Computational Physics</i>, vol. 305. Elsevier, pp. 244–262, 2016.","ista":"Lombardini R, Acevedo R, Kuczala A, Keys KP, Goodrich CP, Johnson BR. 2016. Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena. Journal of Computational Physics. 305, 244–262.","chicago":"Lombardini, Richard, Ramiro Acevedo, Alexander Kuczala, Kerry P. Keys, Carl Peter Goodrich, and Bruce R. Johnson. “Higher-Order Wavelet Reconstruction/Differentiation Filters and Gibbs Phenomena.” <i>Journal of Computational Physics</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.jcp.2015.10.035\">https://doi.org/10.1016/j.jcp.2015.10.035</a>.","apa":"Lombardini, R., Acevedo, R., Kuczala, A., Keys, K. P., Goodrich, C. P., &#38; Johnson, B. R. (2016). Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena. <i>Journal of Computational Physics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcp.2015.10.035\">https://doi.org/10.1016/j.jcp.2015.10.035</a>","ama":"Lombardini R, Acevedo R, Kuczala A, Keys KP, Goodrich CP, Johnson BR. Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena. <i>Journal of Computational Physics</i>. 2016;305:244-262. doi:<a href=\"https://doi.org/10.1016/j.jcp.2015.10.035\">10.1016/j.jcp.2015.10.035</a>"},"oa_version":"None","publication_status":"published","date_created":"2020-04-30T11:40:41Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":305,"doi":"10.1016/j.jcp.2015.10.035","article_type":"original","month":"01","intvolume":"       305","year":"2016","publication_identifier":{"issn":["0021-9991"]},"page":"244-262","title":"Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena","article_processing_charge":"No","date_updated":"2021-01-12T08:15:22Z","type":"journal_article","_id":"7763"},{"article_type":"original","doi":"10.1039/c6sm00094k","volume":12,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2020-04-30T11:40:56Z","oa_version":"None","extern":"1","citation":{"chicago":"Sussman, Daniel M., Carl Peter Goodrich, and Andrea J. Liu. “Spatial Structure of States of Self Stress in Jammed Systems.” <i>Soft Matter</i>. Royal Society of Chemistry, 2016. <a href=\"https://doi.org/10.1039/c6sm00094k\">https://doi.org/10.1039/c6sm00094k</a>.","apa":"Sussman, D. M., Goodrich, C. P., &#38; Liu, A. J. (2016). Spatial structure of states of self stress in jammed systems. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c6sm00094k\">https://doi.org/10.1039/c6sm00094k</a>","ama":"Sussman DM, Goodrich CP, Liu AJ. Spatial structure of states of self stress in jammed systems. <i>Soft Matter</i>. 2016;12(17):3982-3990. doi:<a href=\"https://doi.org/10.1039/c6sm00094k\">10.1039/c6sm00094k</a>","mla":"Sussman, Daniel M., et al. “Spatial Structure of States of Self Stress in Jammed Systems.” <i>Soft Matter</i>, vol. 12, no. 17, Royal Society of Chemistry, 2016, pp. 3982–90, doi:<a href=\"https://doi.org/10.1039/c6sm00094k\">10.1039/c6sm00094k</a>.","short":"D.M. Sussman, C.P. Goodrich, A.J. Liu, Soft Matter 12 (2016) 3982–3990.","ieee":"D. M. Sussman, C. P. Goodrich, and A. J. Liu, “Spatial structure of states of self stress in jammed systems,” <i>Soft Matter</i>, vol. 12, no. 17. Royal Society of Chemistry, pp. 3982–3990, 2016.","ista":"Sussman DM, Goodrich CP, Liu AJ. 2016. Spatial structure of states of self stress in jammed systems. Soft Matter. 12(17), 3982–3990."},"quality_controlled":"1","author":[{"last_name":"Sussman","full_name":"Sussman, Daniel M.","first_name":"Daniel M."},{"orcid":"0000-0002-1307-5074","full_name":"Goodrich, Carl Peter","first_name":"Carl Peter","last_name":"Goodrich","id":"EB352CD2-F68A-11E9-89C5-A432E6697425"},{"last_name":"Liu","full_name":"Liu, Andrea J.","first_name":"Andrea J."}],"status":"public","day":"14","publisher":"Royal Society of Chemistry","publication":"Soft Matter","date_published":"2016-03-14T00:00:00Z","abstract":[{"text":"States of self stress, organizations of internal forces in many-body systems that are in equilibrium with an absence of external forces, can be thought of as the constitutive building blocks of the elastic response of a material. In overconstrained disordered packings they have a natural mathematical correspondence with the zero-energy vibrational modes in underconstrained systems. While substantial attention in the literature has been paid to diverging length scales associated with zero- and finite-energy vibrational modes in jammed systems, less is known about the spatial structure of the states of self stress. In this work we define a natural way in which a unique state of self stress can be associated with each bond in a disordered spring network derived from a jammed packing, and then investigate the spatial structure of these bond-localized states of self stress. This allows for an understanding of how the elastic properties of a system would change upon changing the strength or even existence of any bond in the system.","lang":"eng"}],"language":[{"iso":"eng"}],"_id":"7764","type":"journal_article","date_updated":"2021-01-12T08:15:22Z","related_material":{"link":[{"url":"https://doi.org/10.1039/c6sm02496c","relation":"other"}]},"title":"Spatial structure of states of self stress in jammed systems","article_processing_charge":"No","page":"3982-3990","issue":"17","publication_identifier":{"issn":["1744-683X","1744-6848"]},"year":"2016","intvolume":"        12","month":"03"},{"scopus_import":"1","date_published":"2016-02-27T00:00:00Z","publisher":"ACM","day":"27","language":[{"iso":"eng"}],"publist_id":"6871","abstract":[{"text":"High memory contention is generally agreed to be a worst-case scenario for concurrent data structures. There has been a significant amount of research effort spent investigating designs which minimize contention, and several programming techniques have been proposed to mitigate its effects. However, there are currently few architectural mechanisms to allow scaling contended data structures at high thread counts. In this paper, we investigate hardware support for scalable contended data structures. We propose Lease/Release, a simple addition to standard directory-based MSI cache coherence protocols, allowing participants to lease memory, at the granularity of cache lines, by delaying coherence messages for a short, bounded period of time. Our analysis shows that Lease/Release can significantly reduce the overheads of contention for both non-blocking (lock-free) and lock-based data structure implementations, while ensuring that no deadlocks are introduced. We validate Lease/Release empirically on the Graphite multiprocessor simulator, on a range of data structures, including queue, stack, and priority queue implementations, as well as on transactional applications. Results show that Lease/Release consistently improves both throughput and energy usage, by up to 5x, both for lock-free and lock-based data structure designs.","lang":"eng"}],"volume":"12-16-March-2016","date_created":"2018-12-11T11:48:29Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","doi":"10.1145/2851141.2851155","extern":"1","citation":{"ista":"Haider S, Hasenplaugh W, Alistarh D-A. 2016. Lease/Release: Architectural support for scaling contended data structures. PPoPP: Principles and Practice of Parallel Pogramming vol. 12-16-March-2016.","ieee":"S. Haider, W. Hasenplaugh, and D.-A. Alistarh, “Lease/Release: Architectural support for scaling contended data structures,” presented at the PPoPP: Principles and Practice of Parallel Pogramming, 2016, vol. 12-16-March-2016.","short":"S. Haider, W. Hasenplaugh, D.-A. Alistarh, in:, ACM, 2016.","mla":"Haider, Syed, et al. <i>Lease/Release: Architectural Support for Scaling Contended Data Structures</i>. Vol. 12-16-March-2016, ACM, 2016, doi:<a href=\"https://doi.org/10.1145/2851141.2851155\">10.1145/2851141.2851155</a>.","ama":"Haider S, Hasenplaugh W, Alistarh D-A. Lease/Release: Architectural support for scaling contended data structures. In: Vol 12-16-March-2016. ACM; 2016. doi:<a href=\"https://doi.org/10.1145/2851141.2851155\">10.1145/2851141.2851155</a>","chicago":"Haider, Syed, William Hasenplaugh, and Dan-Adrian Alistarh. “Lease/Release: Architectural Support for Scaling Contended Data Structures,” Vol. 12-16-March-2016. ACM, 2016. <a href=\"https://doi.org/10.1145/2851141.2851155\">https://doi.org/10.1145/2851141.2851155</a>.","apa":"Haider, S., Hasenplaugh, W., &#38; Alistarh, D.-A. (2016). Lease/Release: Architectural support for scaling contended data structures (Vol. 12-16-March-2016). Presented at the PPoPP: Principles and Practice of Parallel Pogramming, ACM. <a href=\"https://doi.org/10.1145/2851141.2851155\">https://doi.org/10.1145/2851141.2851155</a>"},"status":"public","quality_controlled":"1","author":[{"last_name":"Haider","full_name":"Haider, Syed","first_name":"Syed"},{"last_name":"Hasenplaugh","first_name":"William","full_name":"Hasenplaugh, William"},{"last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X","full_name":"Alistarh, Dan-Adrian","first_name":"Dan-Adrian"}],"oa_version":"None","month":"02","acknowledgement":"We would like to thank Richard Black, Miguel Castro, Dave Dice, Aleksandar Dragojevic, Maurice Herlihy, Ant Rowstron, Nir Shavit, and Vasileios Trigonakis, as well as the anonymous reviewers, for helpful suggestions during the development of this paper.","year":"2016","conference":{"name":"PPoPP: Principles and Practice of Parallel Pogramming"},"_id":"785","type":"conference","date_updated":"2022-03-18T12:56:29Z","title":"Lease/Release: Architectural support for scaling contended data structures","article_processing_charge":"No"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1311.3200"}],"arxiv":1,"type":"journal_article","intvolume":"        63","month":"09","issue":"4","quality_controlled":"1","citation":{"mla":"Alistarh, Dan-Adrian, et al. “Are Lock Free Concurrent Algorithms Practically Wait Free .” <i>Journal of the ACM</i>, vol. 63, no. 4, ACM, 2016, doi:<a href=\"https://doi.org/10.1145/2903136\">10.1145/2903136</a>.","short":"D.-A. Alistarh, K. Censor Hillel, N. Shavit, Journal of the ACM 63 (2016).","ista":"Alistarh D-A, Censor Hillel K, Shavit N. 2016. Are lock free concurrent algorithms practically wait free . Journal of the ACM. 63(4).","ieee":"D.-A. Alistarh, K. Censor Hillel, and N. Shavit, “Are lock free concurrent algorithms practically wait free ,” <i>Journal of the ACM</i>, vol. 63, no. 4. ACM, 2016.","chicago":"Alistarh, Dan-Adrian, Keren Censor Hillel, and Nir Shavit. “Are Lock Free Concurrent Algorithms Practically Wait Free .” <i>Journal of the ACM</i>. ACM, 2016. <a href=\"https://doi.org/10.1145/2903136\">https://doi.org/10.1145/2903136</a>.","apa":"Alistarh, D.-A., Censor Hillel, K., &#38; Shavit, N. (2016). Are lock free concurrent algorithms practically wait free . <i>Journal of the ACM</i>. ACM. <a href=\"https://doi.org/10.1145/2903136\">https://doi.org/10.1145/2903136</a>","ama":"Alistarh D-A, Censor Hillel K, Shavit N. Are lock free concurrent algorithms practically wait free . <i>Journal of the ACM</i>. 2016;63(4). doi:<a href=\"https://doi.org/10.1145/2903136\">10.1145/2903136</a>"},"publication_status":"published","abstract":[{"text":"Lock-free concurrent algorithms guarantee that some concurrent operation will always make progress in a finite number of steps. Yet programmers prefer to treat concurrent code as if it were wait-free, guaranteeing that all operations always make progress. Unfortunately, designing wait-free algorithms is generally a very complex task, and the resulting algorithms are not always efficient. Although obtaining efficient wait-free algorithms has been a long-time goal for the theory community, most nonblocking commercial code is only lock-free. This article suggests a simple solution to this problem.We show that for a large class of lock-free algorithms, under scheduling conditions that approximate those found in commercial hardware architectures, lock-free algorithms behave as if they are wait-free. In other words, programmers can continue to design simple lock-free algorithms instead of complex wait-free ones, and in practice, they will get wait-free progress. Our main contribution is a new way of analyzing a general class of lock-free algorithms under a stochastic scheduler. Our analysis relates the individual performance of processes to the global performance of the system using Markov chain lifting between a complex per-process chain and a simpler system progress chain. We show that lock-free algorithms are not only wait-free with probability 1 but that in fact a general subset of lock-free algorithms can be closely bounded in terms of the average number of steps required until an operation completes. To the best of our knowledge, this is the first attempt to analyze progress conditions, typically stated in relation to a worst-case adversary, in a stochastic model capturing their expected asymptotic behavior.","lang":"eng"}],"language":[{"iso":"eng"}],"publist_id":"6870","publisher":"ACM","publication":"Journal of the ACM","title":"Are lock free concurrent algorithms practically wait free ","article_processing_charge":"No","date_updated":"2023-02-23T13:19:04Z","_id":"786","year":"2016","acknowledgement":"Part of this work was performed while the first author was a postdoctoral associate at MIT CSAIL, where he was supported by the SNF Postdoctoral Fellows Program, NSF grant CCF-1217921, DoE ASCR grant ER26116/DE-SC0008923, and by grants from the Oracle and Intel corporations. The second author was supported in part by ISF grant 1696/14. The third author was supported in part by NSF grants CCF-1217921, CCF-1301926, IIS-1447786, and CCF-1561807, and the U.S. Department of Energy under grant DE-SC0008923, and by equipment grants from Intel Corporation.","oa":1,"oa_version":"Preprint","status":"public","author":[{"id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","last_name":"Alistarh","first_name":"Dan-Adrian","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X"},{"first_name":"Keren","full_name":"Censor Hillel, Keren","last_name":"Censor Hillel"},{"first_name":"Nir","full_name":"Shavit, Nir","last_name":"Shavit"}],"extern":"1","doi":"10.1145/2903136","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:48:29Z","volume":63,"external_id":{"arxiv":["1311.3200"]},"day":"01","date_published":"2016-09-01T00:00:00Z"},{"quality_controlled":"1","citation":{"ista":"Barron HC, Vogels TP, Emir UE, Makin TR, O’Shea J, Clare S, Jbabdi S, Dolan RJ, Behrens TEJ. 2016. Unmasking latent inhibitory connections in human cortex to reveal dormant cortical memories. Neuron. 90(1), 191–203.","ieee":"H. C. Barron <i>et al.</i>, “Unmasking latent inhibitory connections in human cortex to reveal dormant cortical memories,” <i>Neuron</i>, vol. 90, no. 1. Elsevier, pp. 191–203, 2016.","mla":"Barron, H. C., et al. “Unmasking Latent Inhibitory Connections in Human Cortex to Reveal Dormant Cortical Memories.” <i>Neuron</i>, vol. 90, no. 1, Elsevier, 2016, pp. 191–203, doi:<a href=\"https://doi.org/10.1016/j.neuron.2016.02.031\">10.1016/j.neuron.2016.02.031</a>.","short":"H.C. Barron, T.P. Vogels, U.E. Emir, T.R. Makin, J. O’Shea, S. Clare, S. Jbabdi, R.J. Dolan, T.E.J. Behrens, Neuron 90 (2016) 191–203.","ama":"Barron HC, Vogels TP, Emir UE, et al. Unmasking latent inhibitory connections in human cortex to reveal dormant cortical memories. <i>Neuron</i>. 2016;90(1):191-203. doi:<a href=\"https://doi.org/10.1016/j.neuron.2016.02.031\">10.1016/j.neuron.2016.02.031</a>","apa":"Barron, H. C., Vogels, T. P., Emir, U. E., Makin, T. R., O’Shea, J., Clare, S., … Behrens, T. E. J. (2016). Unmasking latent inhibitory connections in human cortex to reveal dormant cortical memories. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2016.02.031\">https://doi.org/10.1016/j.neuron.2016.02.031</a>","chicago":"Barron, H.C., Tim P Vogels, U.E. Emir, T.R. Makin, J. O’Shea, S. Clare, S. Jbabdi, R.J. Dolan, and T.E.J. Behrens. “Unmasking Latent Inhibitory Connections in Human Cortex to Reveal Dormant Cortical Memories.” <i>Neuron</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.neuron.2016.02.031\">https://doi.org/10.1016/j.neuron.2016.02.031</a>."},"publication_status":"published","article_type":"original","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Balance of cortical excitation and inhibition (EI) is thought to be disrupted in several neuropsychiatric conditions, yet it is not clear how it is maintained in the healthy human brain. When EI balance is disturbed during learning and memory in animal models, it can be restabilized via formation of inhibitory replicas of newly formed excitatory connections. Here we assess evidence for such selective inhibitory rebalancing in humans. Using fMRI repetition suppression we measure newly formed cortical associations in the human brain. We show that expression of these associations reduces over time despite persistence in behavior, consistent with inhibitory rebalancing. To test this, we modulated excitation/inhibition balance with transcranial direct current stimulation (tDCS). Using ultra-high-field (7T) MRI and spectroscopy, we show that reducing GABA allows cortical associations to be re-expressed. This suggests that in humans associative memories are stored in balanced excitatory-inhibitory ensembles that lie dormant unless latent inhibitory connections are unmasked."}],"file":[{"relation":"main_file","date_created":"2020-07-09T09:57:04Z","file_size":5334136,"date_updated":"2020-07-14T12:48:08Z","file_name":"2016_Neuron_Barron.pdf","content_type":"application/pdf","checksum":"9ce7a1c64986dce0435c070285a7ef9b","access_level":"open_access","creator":"cziletti","file_id":"8104"}],"file_date_updated":"2020-07-14T12:48:08Z","publication":"Neuron","publisher":"Elsevier","ddc":["570"],"type":"journal_article","month":"04","intvolume":"        90","issue":"1","page":"191-203","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"author":[{"first_name":"H.C.","full_name":"Barron, H.C.","last_name":"Barron"},{"full_name":"Vogels, Tim P","first_name":"Tim P","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels"},{"first_name":"U.E.","full_name":"Emir, U.E.","last_name":"Emir"},{"last_name":"Makin","full_name":"Makin, T.R.","first_name":"T.R."},{"full_name":"O’Shea, J.","first_name":"J.","last_name":"O’Shea"},{"last_name":"Clare","first_name":"S.","full_name":"Clare, S."},{"first_name":"S.","full_name":"Jbabdi, S.","last_name":"Jbabdi"},{"first_name":"R.J.","full_name":"Dolan, R.J.","last_name":"Dolan"},{"last_name":"Behrens","first_name":"T.E.J.","full_name":"Behrens, T.E.J."}],"extern":"1","oa_version":"Published Version","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","date_created":"2020-06-25T13:05:33Z","volume":90,"doi":"10.1016/j.neuron.2016.02.031","pmid":1,"external_id":{"pmid":["26996082"]},"date_published":"2016-04-06T00:00:00Z","day":"06","title":"Unmasking latent inhibitory connections in human cortex to reveal dormant cortical memories","article_processing_charge":"No","date_updated":"2021-01-12T08:16:34Z","_id":"8020","has_accepted_license":"1","year":"2016","publication_identifier":{"issn":["0896-6273"]},"oa":1}]