[{"article_processing_charge":"No","title":"Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules","type":"journal_article","_id":"8454","date_updated":"2021-01-12T08:19:23Z","year":"2016","intvolume":"        96","month":"08","page":"1-46","issue":"8","publication_identifier":{"issn":["0079-6565"]},"oa_version":"None","citation":{"apa":"Schanda, P., &#38; Ernst, M. (2016). Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules. <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.pnmrs.2016.02.001\">https://doi.org/10.1016/j.pnmrs.2016.02.001</a>","chicago":"Schanda, Paul, and Matthias Ernst. “Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.” <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.pnmrs.2016.02.001\">https://doi.org/10.1016/j.pnmrs.2016.02.001</a>.","ama":"Schanda P, Ernst M. Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules. <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>. 2016;96(8):1-46. doi:<a href=\"https://doi.org/10.1016/j.pnmrs.2016.02.001\">10.1016/j.pnmrs.2016.02.001</a>","short":"P. Schanda, M. Ernst, Progress in Nuclear Magnetic Resonance Spectroscopy 96 (2016) 1–46.","mla":"Schanda, Paul, and Matthias Ernst. “Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.” <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>, vol. 96, no. 8, Elsevier, 2016, pp. 1–46, doi:<a href=\"https://doi.org/10.1016/j.pnmrs.2016.02.001\">10.1016/j.pnmrs.2016.02.001</a>.","ieee":"P. Schanda and M. Ernst, “Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules,” <i>Progress in Nuclear Magnetic Resonance Spectroscopy</i>, vol. 96, no. 8. Elsevier, pp. 1–46, 2016.","ista":"Schanda P, Ernst M. 2016. Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules. Progress in Nuclear Magnetic Resonance Spectroscopy. 96(8), 1–46."},"extern":"1","author":[{"full_name":"Schanda, Paul","first_name":"Paul","orcid":"0000-0002-9350-7606","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","last_name":"Schanda"},{"last_name":"Ernst","first_name":"Matthias","full_name":"Ernst, Matthias"}],"quality_controlled":"1","status":"public","article_type":"original","doi":"10.1016/j.pnmrs.2016.02.001","volume":96,"publication_status":"published","date_created":"2020-09-18T10:07:17Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Magic-angle spinning solid-state NMR spectroscopy is an important technique to study molecular structure, dynamics and interactions, and is rapidly gaining importance in biomolecular sciences. Here we provide an overview of experimental approaches to study molecular dynamics by MAS solid-state NMR, with an emphasis on the underlying theoretical concepts and differences of MAS solid-state NMR compared to solution-state NMR. The theoretical foundations of nuclear spin relaxation are revisited, focusing on the particularities of spin relaxation in solid samples under magic-angle spinning. We discuss the range of validity of Redfield theory, as well as the inherent multi-exponential behavior of relaxation in solids. Experimental challenges for measuring relaxation parameters in MAS solid-state NMR and a few recently proposed relaxation approaches are discussed, which provide information about time scales and amplitudes of motions ranging from picoseconds to milliseconds. We also discuss the theoretical basis and experimental measurements of anisotropic interactions (chemical-shift anisotropies, dipolar and quadrupolar couplings), which give direct information about the amplitude of motions. The potential of combining relaxation data with such measurements of dynamically-averaged anisotropic interactions is discussed. Although the focus of this review is on the theoretical foundations of dynamics studies rather than their application, we close by discussing a small number of recent dynamics studies, where the dynamic properties of proteins in crystals are compared to those in solution.","lang":"eng"}],"language":[{"iso":"eng"}],"publisher":"Elsevier","day":"01","publication":"Progress in Nuclear Magnetic Resonance Spectroscopy","date_published":"2016-08-01T00:00:00Z"},{"date_published":"2016-07-04T00:00:00Z","publication":"Chemical Communications","day":"04","publisher":"Royal Society of Chemistry","language":[{"iso":"eng"}],"abstract":[{"text":"Solid-state NMR spectroscopy allows the characterization of the structure, interactions and dynamics of insoluble and/or very large proteins. Sensitivity and resolution are often major challenges for obtaining atomic-resolution information, in particular for very large protein complexes. Here we show that the use of deuterated, specifically CH3-labelled proteins result in significant sensitivity gains compared to previously employed CHD2 labelling, while line widths increase only marginally. We apply this labelling strategy to a 468 kDa-large dodecameric aminopeptidase, TET2, and the 1.6 MDa-large 50S ribosome subunit of Thermus thermophilus.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2020-09-18T10:07:29Z","volume":52,"article_type":"original","doi":"10.1039/c6cc04484k","author":[{"last_name":"Kurauskas","first_name":"Vilius","full_name":"Kurauskas, Vilius"},{"full_name":"Crublet, Elodie","first_name":"Elodie","last_name":"Crublet"},{"last_name":"Macek","full_name":"Macek, Pavel","first_name":"Pavel"},{"full_name":"Kerfah, Rime","first_name":"Rime","last_name":"Kerfah"},{"first_name":"Diego F.","full_name":"Gauto, Diego F.","last_name":"Gauto"},{"full_name":"Boisbouvier, Jérôme","first_name":"Jérôme","last_name":"Boisbouvier"},{"orcid":"0000-0002-9350-7606","first_name":"Paul","full_name":"Schanda, Paul","last_name":"Schanda","id":"7B541462-FAF6-11E9-A490-E8DFE5697425"}],"quality_controlled":"1","status":"public","citation":{"ista":"Kurauskas V, Crublet E, Macek P, Kerfah R, Gauto DF, Boisbouvier J, Schanda P. 2016. Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3labelling: Application to the 50S ribosome subunit. Chemical Communications. 52(61), 9558–9561.","ieee":"V. Kurauskas <i>et al.</i>, “Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3labelling: Application to the 50S ribosome subunit,” <i>Chemical Communications</i>, vol. 52, no. 61. Royal Society of Chemistry, pp. 9558–9561, 2016.","short":"V. Kurauskas, E. Crublet, P. Macek, R. Kerfah, D.F. Gauto, J. Boisbouvier, P. Schanda, Chemical Communications 52 (2016) 9558–9561.","mla":"Kurauskas, Vilius, et al. “Sensitive Proton-Detected Solid-State NMR Spectroscopy of Large Proteins with Selective CH3labelling: Application to the 50S Ribosome Subunit.” <i>Chemical Communications</i>, vol. 52, no. 61, Royal Society of Chemistry, 2016, pp. 9558–61, doi:<a href=\"https://doi.org/10.1039/c6cc04484k\">10.1039/c6cc04484k</a>.","ama":"Kurauskas V, Crublet E, Macek P, et al. Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3labelling: Application to the 50S ribosome subunit. <i>Chemical Communications</i>. 2016;52(61):9558-9561. doi:<a href=\"https://doi.org/10.1039/c6cc04484k\">10.1039/c6cc04484k</a>","apa":"Kurauskas, V., Crublet, E., Macek, P., Kerfah, R., Gauto, D. F., Boisbouvier, J., &#38; Schanda, P. (2016). Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3labelling: Application to the 50S ribosome subunit. <i>Chemical Communications</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c6cc04484k\">https://doi.org/10.1039/c6cc04484k</a>","chicago":"Kurauskas, Vilius, Elodie Crublet, Pavel Macek, Rime Kerfah, Diego F. Gauto, Jérôme Boisbouvier, and Paul Schanda. “Sensitive Proton-Detected Solid-State NMR Spectroscopy of Large Proteins with Selective CH3labelling: Application to the 50S Ribosome Subunit.” <i>Chemical Communications</i>. Royal Society of Chemistry, 2016. <a href=\"https://doi.org/10.1039/c6cc04484k\">https://doi.org/10.1039/c6cc04484k</a>."},"keyword":["Materials Chemistry","Electronic","Optical and Magnetic Materials","General Chemistry","Surfaces","Coatings and Films","Metals and Alloys","Ceramics and Composites","Catalysis"],"extern":"1","oa_version":"None","publication_identifier":{"issn":["1359-7345","1364-548X"]},"issue":"61","page":"9558-9561","month":"07","intvolume":"        52","year":"2016","date_updated":"2021-01-12T08:19:23Z","type":"journal_article","_id":"8455","article_processing_charge":"No","title":"Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3labelling: Application to the 50S ribosome subunit"},{"title":"Saturation of recognition elements blocks evolution of new tRNA identities","type":"journal_article","_id":"849","date_updated":"2021-01-12T08:19:38Z","month":"04","intvolume":"         2","acknowledgement":"We thank D. Söll, H. Grosjean, and L. Filonava for comments and suggestions.\nM.O. and P.D.D. thank the Barcelona Supercomputing Center for CPU/GPU time on MareNostrum/\nMinoTauro. P.D.D. is a PEDECIBA (Programa de Desarrollo de las Ciencias Básicas) and an SNI\n(Sistema Nacional de Investigadores) (ANII, Uruguay) researcher. Funding: This work was\nsupported in part by the Spanish Ministry of Economy and Competitiveness (grants\nBIO2012-32200, Sev-2012-0208, and BIO2012-32868 to L.R.d.P., F.A.K., and M.O., respectively)\nand by the Catalan Government (grants 2014-SGR-0771, 2014-SGR-0974, and 2014-SGR-0134 to\nL.R.d.P., F.A.K., and M.O., respectively). This work was also supported by the Howard Hughes\nMedical Institute International Early Career Scientist Program (55007424), by a European Research\nCouncil (ERC) Starting Grant (335980_EinME to F.K.), and by a grant from the ERC (ERC_SimDNA to\nM.O). A.G.T. and C.B. are funded by the Spanish Ministry of Economy and Competitiveness\n(FPDI-2013-17742 and BES-2013-064004, respectively).","year":"2016","issue":"4","page":"e1501860 - e1501860","extern":1,"citation":{"mla":"Saint Léger, Adélaïde, et al. “Saturation of Recognition Elements Blocks Evolution of New TRNA Identities.” <i>Science Advances</i>, vol. 2, no. 4, American Association for the Advancement of Science, 2016, pp. e1501860–e1501860, doi:<a href=\"https://doi.org/10.1126/sciadv.1501860\">10.1126/sciadv.1501860</a>.","short":"A. Saint Léger, C. Bello, P. Dans, A. Torres, E. Novoa, N. Camacho, M. Orozco, F. Kondrashov, L. Ribas De Pouplana, Science Advances 2 (2016) e1501860–e1501860.","ista":"Saint Léger A, Bello C, Dans P, Torres A, Novoa E, Camacho N, Orozco M, Kondrashov F, Ribas De Pouplana L. 2016. Saturation of recognition elements blocks evolution of new tRNA identities. Science advances. 2(4), e1501860–e1501860.","ieee":"A. Saint Léger <i>et al.</i>, “Saturation of recognition elements blocks evolution of new tRNA identities,” <i>Science advances</i>, vol. 2, no. 4. American Association for the Advancement of Science, pp. e1501860–e1501860, 2016.","chicago":"Saint Léger, Adélaïde, Carla Bello, Pablo Dans, Adrian Torres, Eva Novoa, Noelia Camacho, Modesto Orozco, Fyodor Kondrashov, and Lluís Ribas De Pouplana. “Saturation of Recognition Elements Blocks Evolution of New TRNA Identities.” <i>Science Advances</i>. American Association for the Advancement of Science, 2016. <a href=\"https://doi.org/10.1126/sciadv.1501860\">https://doi.org/10.1126/sciadv.1501860</a>.","apa":"Saint Léger, A., Bello, C., Dans, P., Torres, A., Novoa, E., Camacho, N., … Ribas De Pouplana, L. (2016). Saturation of recognition elements blocks evolution of new tRNA identities. <i>Science Advances</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/sciadv.1501860\">https://doi.org/10.1126/sciadv.1501860</a>","ama":"Saint Léger A, Bello C, Dans P, et al. Saturation of recognition elements blocks evolution of new tRNA identities. <i>Science advances</i>. 2016;2(4):e1501860-e1501860. doi:<a href=\"https://doi.org/10.1126/sciadv.1501860\">10.1126/sciadv.1501860</a>"},"status":"public","tmp":{"short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png"},"author":[{"full_name":"Saint-Léger, Adélaïde","first_name":"Adélaïde","last_name":"Saint Léger"},{"last_name":"Bello","first_name":"Carla","full_name":"Bello, Carla"},{"full_name":"Dans, Pablo D","first_name":"Pablo","last_name":"Dans"},{"first_name":"Adrian","full_name":"Torres, Adrian G","last_name":"Torres"},{"first_name":"Eva","full_name":"Novoa, Eva M","last_name":"Novoa"},{"last_name":"Camacho","full_name":"Camacho, Noelia","first_name":"Noelia"},{"last_name":"Orozco","full_name":"Orozco, Modesto","first_name":"Modesto"},{"first_name":"Fyodor","full_name":"Fyodor Kondrashov","orcid":"0000-0001-8243-4694","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","last_name":"Kondrashov"},{"last_name":"Ribas De Pouplana","first_name":"Lluís","full_name":"Ribas De Pouplana, Lluís"}],"quality_controlled":0,"volume":2,"date_created":"2018-12-11T11:48:50Z","publication_status":"published","doi":"10.1126/sciadv.1501860","publist_id":"6798","abstract":[{"lang":"eng","text":"Understanding the principles that led to the current complexity of the genetic code is a central question in evolution. Expansion of the genetic code required the selection of new transfer RNAs (tRNAs) with specific recognition signals that allowed them to be matured, modified, aminoacylated, and processed by the ribosome without compromising the fidelity or efficiency of protein synthesis. We show that saturation of recognition signals blocks the emergence of new tRNA identities and that the rate of nucleotide substitutions in tRNAs is higher in species with fewer tRNA genes. We propose that the growth of the genetic code stalled because a limit was reached in the number of identity elements that can be effectively used in the tRNA structure."}],"publication":"Science advances","date_published":"2016-04-01T00:00:00Z","day":"01","publisher":"American Association for the Advancement of Science"},{"extern":"1","citation":{"ama":"Guardia M, Kaloshin V, Zhang J. A second order expansion of the separatrix map for trigonometric perturbations of a priori unstable systems. <i>Communications in Mathematical Physics</i>. 2016;348:321-361. doi:<a href=\"https://doi.org/10.1007/s00220-016-2705-9\">10.1007/s00220-016-2705-9</a>","apa":"Guardia, M., Kaloshin, V., &#38; Zhang, J. (2016). A second order expansion of the separatrix map for trigonometric perturbations of a priori unstable systems. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-016-2705-9\">https://doi.org/10.1007/s00220-016-2705-9</a>","chicago":"Guardia, M., Vadim Kaloshin, and J. Zhang. “A Second Order Expansion of the Separatrix Map for Trigonometric Perturbations of a Priori Unstable Systems.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1007/s00220-016-2705-9\">https://doi.org/10.1007/s00220-016-2705-9</a>.","ieee":"M. Guardia, V. Kaloshin, and J. Zhang, “A second order expansion of the separatrix map for trigonometric perturbations of a priori unstable systems,” <i>Communications in Mathematical Physics</i>, vol. 348. Springer Nature, pp. 321–361, 2016.","ista":"Guardia M, Kaloshin V, Zhang J. 2016. A second order expansion of the separatrix map for trigonometric perturbations of a priori unstable systems. Communications in Mathematical Physics. 348, 321–361.","short":"M. Guardia, V. Kaloshin, J. Zhang, Communications in Mathematical Physics 348 (2016) 321–361.","mla":"Guardia, M., et al. “A Second Order Expansion of the Separatrix Map for Trigonometric Perturbations of a Priori Unstable Systems.” <i>Communications in Mathematical Physics</i>, vol. 348, Springer Nature, 2016, pp. 321–61, doi:<a href=\"https://doi.org/10.1007/s00220-016-2705-9\">10.1007/s00220-016-2705-9</a>."},"author":[{"full_name":"Guardia, M.","first_name":"M.","last_name":"Guardia"},{"id":"FE553552-CDE8-11E9-B324-C0EBE5697425","last_name":"Kaloshin","full_name":"Kaloshin, Vadim","first_name":"Vadim","orcid":"0000-0002-6051-2628"},{"first_name":"J.","full_name":"Zhang, J.","last_name":"Zhang"}],"status":"public","quality_controlled":"1","oa_version":"None","volume":348,"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-09-18T10:45:50Z","article_type":"original","doi":"10.1007/s00220-016-2705-9","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"In this paper we study a so-called separatrix map introduced by Zaslavskii–Filonenko (Sov Phys JETP 27:851–857, 1968) and studied by Treschev (Physica D 116(1–2):21–43, 1998; J Nonlinear Sci 12(1):27–58, 2002), Piftankin (Nonlinearity (19):2617–2644, 2006) Piftankin and Treshchëv (Uspekhi Mat Nauk 62(2(374)):3–108, 2007). We derive a second order expansion of this map for trigonometric perturbations. In Castejon et al. (Random iteration of maps of a cylinder and diffusive behavior. Preprint available at arXiv:1501.03319, 2015), Guardia and Kaloshin (Stochastic diffusive behavior through big gaps in a priori unstable systems (in preparation), 2015), and Kaloshin et al. (Normally Hyperbolic Invariant Laminations and diffusive behavior for the generalized Arnold example away from resonances. Preprint available at http://www.terpconnect.umd.edu/vkaloshi/, 2015), applying the results of the present paper, we describe a class of nearly integrable deterministic systems with stochastic diffusive behavior."}],"publication":"Communications in Mathematical Physics","date_published":"2016-11-01T00:00:00Z","publisher":"Springer Nature","day":"01","title":"A second order expansion of the separatrix map for trigonometric perturbations of a priori unstable systems","article_processing_charge":"No","type":"journal_article","_id":"8493","date_updated":"2021-01-12T08:19:39Z","month":"11","year":"2016","intvolume":"       348","publication_identifier":{"issn":["0010-3616","1432-0916"]},"page":"321-361"},{"title":"Arnold diffusion in arbitrary degrees of freedom and normally hyperbolic invariant cylinders","article_processing_charge":"No","date_updated":"2021-01-12T08:19:39Z","_id":"8494","type":"journal_article","year":"2016","intvolume":"       217","month":"09","page":"1-79","publication_identifier":{"issn":["0001-5962"]},"issue":"1","oa_version":"None","quality_controlled":"1","author":[{"last_name":"Bernard","full_name":"Bernard, Patrick","first_name":"Patrick"},{"id":"FE553552-CDE8-11E9-B324-C0EBE5697425","last_name":"Kaloshin","first_name":"Vadim","full_name":"Kaloshin, Vadim","orcid":"0000-0002-6051-2628"},{"full_name":"Zhang, Ke","first_name":"Ke","last_name":"Zhang"}],"status":"public","extern":"1","citation":{"ama":"Bernard P, Kaloshin V, Zhang K. Arnold diffusion in arbitrary degrees of freedom and normally hyperbolic invariant cylinders. <i>Acta Mathematica</i>. 2016;217(1):1-79. doi:<a href=\"https://doi.org/10.1007/s11511-016-0141-5\">10.1007/s11511-016-0141-5</a>","chicago":"Bernard, Patrick, Vadim Kaloshin, and Ke Zhang. “Arnold Diffusion in Arbitrary Degrees of Freedom and Normally Hyperbolic Invariant Cylinders.” <i>Acta Mathematica</i>. Institut Mittag-Leffler, 2016. <a href=\"https://doi.org/10.1007/s11511-016-0141-5\">https://doi.org/10.1007/s11511-016-0141-5</a>.","apa":"Bernard, P., Kaloshin, V., &#38; Zhang, K. (2016). Arnold diffusion in arbitrary degrees of freedom and normally hyperbolic invariant cylinders. <i>Acta Mathematica</i>. Institut Mittag-Leffler. <a href=\"https://doi.org/10.1007/s11511-016-0141-5\">https://doi.org/10.1007/s11511-016-0141-5</a>","ista":"Bernard P, Kaloshin V, Zhang K. 2016. Arnold diffusion in arbitrary degrees of freedom and normally hyperbolic invariant cylinders. Acta Mathematica. 217(1), 1–79.","ieee":"P. Bernard, V. Kaloshin, and K. Zhang, “Arnold diffusion in arbitrary degrees of freedom and normally hyperbolic invariant cylinders,” <i>Acta Mathematica</i>, vol. 217, no. 1. Institut Mittag-Leffler, pp. 1–79, 2016.","short":"P. Bernard, V. Kaloshin, K. Zhang, Acta Mathematica 217 (2016) 1–79.","mla":"Bernard, Patrick, et al. “Arnold Diffusion in Arbitrary Degrees of Freedom and Normally Hyperbolic Invariant Cylinders.” <i>Acta Mathematica</i>, vol. 217, no. 1, Institut Mittag-Leffler, 2016, pp. 1–79, doi:<a href=\"https://doi.org/10.1007/s11511-016-0141-5\">10.1007/s11511-016-0141-5</a>."},"doi":"10.1007/s11511-016-0141-5","article_type":"original","date_created":"2020-09-18T10:46:07Z","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":217,"abstract":[{"lang":"eng","text":"We prove a form of Arnold diffusion in the a-priori stable case. Let\r\nH0(p)+ϵH1(θ,p,t),θ∈Tn,p∈Bn,t∈T=R/T,\r\nbe a nearly integrable system of arbitrary degrees of freedom n⩾2 with a strictly convex H0. We show that for a “generic” ϵH1, there exists an orbit (θ,p) satisfying\r\n∥p(t)−p(0)∥>l(H1)>0,\r\nwhere l(H1) is independent of ϵ. The diffusion orbit travels along a codimension-1 resonance, and the only obstruction to our construction is a finite set of additional resonances.\r\n\r\nFor the proof we use a combination of geometric and variational methods, and manage to adapt tools which have recently been developed in the a-priori unstable case."}],"language":[{"iso":"eng"}],"day":"28","publisher":"Institut Mittag-Leffler","date_published":"2016-09-28T00:00:00Z","publication":"Acta Mathematica"},{"doi":"10.4007/annals.2016.184.2.5","article_type":"original","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-09-18T10:46:22Z","volume":184,"oa_version":"None","quality_controlled":"1","author":[{"last_name":"Avila","full_name":"Avila, Artur","first_name":"Artur"},{"last_name":"De Simoi","first_name":"Jacopo","full_name":"De Simoi, Jacopo"},{"full_name":"Kaloshin, Vadim","first_name":"Vadim","orcid":"0000-0002-6051-2628","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","last_name":"Kaloshin"}],"status":"public","citation":{"chicago":"Avila, Artur, Jacopo De Simoi, and Vadim Kaloshin. “An Integrable Deformation of an Ellipse of Small Eccentricity Is an Ellipse.” <i>Annals of Mathematics</i>. Princeton University Press, 2016. <a href=\"https://doi.org/10.4007/annals.2016.184.2.5\">https://doi.org/10.4007/annals.2016.184.2.5</a>.","apa":"Avila, A., De Simoi, J., &#38; Kaloshin, V. (2016). An integrable deformation of an ellipse of small eccentricity is an ellipse. <i>Annals of Mathematics</i>. Princeton University Press. <a href=\"https://doi.org/10.4007/annals.2016.184.2.5\">https://doi.org/10.4007/annals.2016.184.2.5</a>","ama":"Avila A, De Simoi J, Kaloshin V. An integrable deformation of an ellipse of small eccentricity is an ellipse. <i>Annals of Mathematics</i>. 2016;184(2):527-558. doi:<a href=\"https://doi.org/10.4007/annals.2016.184.2.5\">10.4007/annals.2016.184.2.5</a>","short":"A. Avila, J. De Simoi, V. Kaloshin, Annals of Mathematics 184 (2016) 527–558.","mla":"Avila, Artur, et al. “An Integrable Deformation of an Ellipse of Small Eccentricity Is an Ellipse.” <i>Annals of Mathematics</i>, vol. 184, no. 2, Princeton University Press, 2016, pp. 527–58, doi:<a href=\"https://doi.org/10.4007/annals.2016.184.2.5\">10.4007/annals.2016.184.2.5</a>.","ista":"Avila A, De Simoi J, Kaloshin V. 2016. An integrable deformation of an ellipse of small eccentricity is an ellipse. Annals of Mathematics. 184(2), 527–558.","ieee":"A. Avila, J. De Simoi, and V. Kaloshin, “An integrable deformation of an ellipse of small eccentricity is an ellipse,” <i>Annals of Mathematics</i>, vol. 184, no. 2. Princeton University Press, pp. 527–558, 2016."},"extern":"1","day":"01","publisher":"Princeton University Press","date_published":"2016-09-01T00:00:00Z","publication":"Annals of Mathematics","language":[{"iso":"eng"}],"date_updated":"2021-01-12T08:19:40Z","_id":"8496","type":"journal_article","article_processing_charge":"No","title":"An integrable deformation of an ellipse of small eccentricity is an ellipse","page":"527-558","publication_identifier":{"issn":["0003-486X"]},"issue":"2","year":"2016","intvolume":"       184","month":"09"},{"citation":{"mla":"Féjoz, Jacques, et al. “Kirkwood Gaps and Diffusion along Mean Motion Resonances in the Restricted Planar Three-Body Problem.” <i>Journal of the European Mathematical Society</i>, vol. 18, no. 10, European Mathematical Society Publishing House, 2016, pp. 2315–403, doi:<a href=\"https://doi.org/10.4171/jems/642\">10.4171/jems/642</a>.","short":"J. Féjoz, M. Guàrdia, V. Kaloshin, P. Roldán, Journal of the European Mathematical Society 18 (2016) 2315–2403.","ista":"Féjoz J, Guàrdia M, Kaloshin V, Roldán P. 2016. Kirkwood gaps and diffusion along mean motion resonances in the restricted planar three-body problem. Journal of the European Mathematical Society. 18(10), 2315–2403.","ieee":"J. Féjoz, M. Guàrdia, V. Kaloshin, and P. Roldán, “Kirkwood gaps and diffusion along mean motion resonances in the restricted planar three-body problem,” <i>Journal of the European Mathematical Society</i>, vol. 18, no. 10. European Mathematical Society Publishing House, pp. 2315–2403, 2016.","chicago":"Féjoz, Jacques, Marcel Guàrdia, Vadim Kaloshin, and Pablo Roldán. “Kirkwood Gaps and Diffusion along Mean Motion Resonances in the Restricted Planar Three-Body Problem.” <i>Journal of the European Mathematical Society</i>. European Mathematical Society Publishing House, 2016. <a href=\"https://doi.org/10.4171/jems/642\">https://doi.org/10.4171/jems/642</a>.","apa":"Féjoz, J., Guàrdia, M., Kaloshin, V., &#38; Roldán, P. (2016). Kirkwood gaps and diffusion along mean motion resonances in the restricted planar three-body problem. <i>Journal of the European Mathematical Society</i>. European Mathematical Society Publishing House. <a href=\"https://doi.org/10.4171/jems/642\">https://doi.org/10.4171/jems/642</a>","ama":"Féjoz J, Guàrdia M, Kaloshin V, Roldán P. Kirkwood gaps and diffusion along mean motion resonances in the restricted planar three-body problem. <i>Journal of the European Mathematical Society</i>. 2016;18(10):2315-2403. doi:<a href=\"https://doi.org/10.4171/jems/642\">10.4171/jems/642</a>"},"extern":"1","quality_controlled":"1","author":[{"full_name":"Féjoz, Jacques","first_name":"Jacques","last_name":"Féjoz"},{"last_name":"Guàrdia","full_name":"Guàrdia, Marcel","first_name":"Marcel"},{"last_name":"Kaloshin","id":"FE553552-CDE8-11E9-B324-C0EBE5697425","orcid":"0000-0002-6051-2628","full_name":"Kaloshin, Vadim","first_name":"Vadim"},{"last_name":"Roldán","first_name":"Pablo","full_name":"Roldán, Pablo"}],"status":"public","oa_version":"None","volume":18,"date_created":"2020-09-18T10:46:31Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","article_type":"original","doi":"10.4171/jems/642","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We study the dynamics of the restricted planar three-body problem near mean motion resonances, i.e. a resonance involving the Keplerian periods of the two lighter bodies revolving around the most massive one. This problem is often used to model Sun–Jupiter–asteroid systems. For the primaries (Sun and Jupiter), we pick a realistic mass ratio μ=10−3 and a small eccentricity e0>0. The main result is a construction of a variety of non local diffusing orbits which show a drastic change of the osculating (instant) eccentricity of the asteroid, while the osculating semi major axis is kept almost constant. The proof relies on the careful analysis of the circular problem, which has a hyperbolic structure, but for which diffusion is prevented by KAM tori. In the proof we verify certain non-degeneracy conditions numerically.\r\n\r\nBased on the work of Treschev, it is natural to conjecture that the time of diffusion for this problem is ∼−ln(μe0)μ3/2e0. We expect our instability mechanism to apply to realistic values of e0 and we give heuristic arguments in its favor. If so, the applicability of Nekhoroshev theory to the three-body problem as well as the long time stability become questionable.\r\n\r\nIt is well known that, in the Asteroid Belt, located between the orbits of Mars and Jupiter, the distribution of asteroids has the so-called Kirkwood gaps exactly at mean motion resonances of low order. Our mechanism gives a possible explanation of their existence. To relate the existence of Kirkwood gaps with Arnol'd diffusion, we also state a conjecture on its existence for a typical ϵ-perturbation of the product of the pendulum and the rotator. Namely, we predict that a positive conditional measure of initial conditions concentrated in the main resonance exhibits Arnol’d diffusion on time scales −lnϵϵ2."}],"publication":"Journal of the European Mathematical Society","date_published":"2016-09-19T00:00:00Z","publisher":"European Mathematical Society Publishing House","day":"19","title":"Kirkwood gaps and diffusion along mean motion resonances in the restricted planar three-body problem","article_processing_charge":"No","type":"journal_article","_id":"8497","date_updated":"2021-01-12T08:19:41Z","month":"09","intvolume":"        18","year":"2016","issue":"10","publication_identifier":{"issn":["1435-9855"]},"page":"2315-2403"},{"doi":"10.1038/nature17995","publication_status":"published","date_created":"2018-12-11T11:48:50Z","volume":533,"status":"public","author":[{"id":"39A7BF80-F248-11E8-B48F-1D18A9856A87","last_name":"Sarkisyan","full_name":"Karen Sarkisyan","first_name":"Karen","orcid":"0000-0002-5375-6341"},{"last_name":"Bolotin","full_name":"Bolotin, Dmitry A","first_name":"Dmitry"},{"last_name":"Meer","full_name":"Meer, Margarita V","first_name":"Margarita"},{"last_name":"Usmanova","full_name":"Usmanova, Dinara R","first_name":"Dinara"},{"last_name":"Mishin","full_name":"Mishin, Alexander S","first_name":"Alexander"},{"first_name":"George","full_name":"Sharonov, George V","last_name":"Sharonov"},{"last_name":"Ivankov","first_name":"Dmitry","full_name":"Ivankov, Dmitry N"},{"last_name":"Bozhanova","first_name":"Nina","full_name":"Bozhanova, Nina G"},{"last_name":"Baranov","full_name":"Baranov, Mikhail S","first_name":"Mikhail"},{"last_name":"Soylemez","full_name":"Soylemez, Onuralp","first_name":"Onuralp"},{"last_name":"Bogatyreva","first_name":"Natalya","full_name":"Bogatyreva, Natalya S"},{"full_name":"Vlasov, Peter K","first_name":"Peter","last_name":"Vlasov"},{"last_name":"Egorov","first_name":"Evgeny","full_name":"Egorov, Evgeny S"},{"last_name":"Logacheva","first_name":"Maria","full_name":"Logacheva, Maria D"},{"last_name":"Kondrashov","first_name":"Alexey","full_name":"Kondrashov, Alexey S"},{"first_name":"Dmitriy","full_name":"Chudakov, Dmitriy M","last_name":"Chudakov"},{"last_name":"Putintseva","full_name":"Putintseva, Ekaterina V","first_name":"Ekaterina"},{"first_name":"Ilgar","full_name":"Mamedov, Ilgar Z","last_name":"Mamedov"},{"last_name":"Tawfik","first_name":"Dan","full_name":"Tawfik, Dan S"},{"full_name":"Lukyanov, Konstantin A","first_name":"Konstantin","last_name":"Lukyanov"},{"id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","last_name":"Kondrashov","full_name":"Fyodor Kondrashov","first_name":"Fyodor","orcid":"0000-0001-8243-4694"}],"quality_controlled":0,"citation":{"ista":"Sarkisyan K, Bolotin D, Meer M, Usmanova D, Mishin A, Sharonov G, Ivankov D, Bozhanova N, Baranov M, Soylemez O, Bogatyreva N, Vlasov P, Egorov E, Logacheva M, Kondrashov A, Chudakov D, Putintseva E, Mamedov I, Tawfik D, Lukyanov K, Kondrashov F. 2016. Local fitness landscape of the green fluorescent protein. Nature. 533, 397–401.","ieee":"K. Sarkisyan <i>et al.</i>, “Local fitness landscape of the green fluorescent protein,” <i>Nature</i>, vol. 533. Nature Publishing Group, pp. 397–401, 2016.","mla":"Sarkisyan, Karen, et al. “Local Fitness Landscape of the Green Fluorescent Protein.” <i>Nature</i>, vol. 533, Nature Publishing Group, 2016, pp. 397–401, doi:<a href=\"https://doi.org/10.1038/nature17995\">10.1038/nature17995</a>.","short":"K. Sarkisyan, D. Bolotin, M. Meer, D. Usmanova, A. Mishin, G. Sharonov, D. Ivankov, N. Bozhanova, M. Baranov, O. Soylemez, N. Bogatyreva, P. Vlasov, E. Egorov, M. Logacheva, A. Kondrashov, D. Chudakov, E. Putintseva, I. Mamedov, D. Tawfik, K. Lukyanov, F. Kondrashov, Nature 533 (2016) 397–401.","ama":"Sarkisyan K, Bolotin D, Meer M, et al. Local fitness landscape of the green fluorescent protein. <i>Nature</i>. 2016;533:397-401. doi:<a href=\"https://doi.org/10.1038/nature17995\">10.1038/nature17995</a>","chicago":"Sarkisyan, Karen, Dmitry Bolotin, Margarita Meer, Dinara Usmanova, Alexander Mishin, George Sharonov, Dmitry Ivankov, et al. “Local Fitness Landscape of the Green Fluorescent Protein.” <i>Nature</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nature17995\">https://doi.org/10.1038/nature17995</a>.","apa":"Sarkisyan, K., Bolotin, D., Meer, M., Usmanova, D., Mishin, A., Sharonov, G., … Kondrashov, F. (2016). Local fitness landscape of the green fluorescent protein. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature17995\">https://doi.org/10.1038/nature17995</a>"},"extern":1,"publisher":"Nature Publishing Group","day":"11","date_published":"2016-05-11T00:00:00Z","publication":"Nature","abstract":[{"text":"Fitness landscapes depict how genotypes manifest at the phenotypic level and form the basis of our understanding of many areas of biology, yet their properties remain elusive. Previous studies have analysed specific genes, often using their function as a proxy for fitness, experimentally assessing the effect on function of single mutations and their combinations in a specific sequence or in different sequences. However, systematic high-throughput studies of the local fitness landscape of an entire protein have not yet been reported. Here we visualize an extensive region of the local fitness landscape of the green fluorescent protein from Aequorea Victoria (avGFP) by measuring the native function (fluorescence) of tens of thousands of derivative genotypes of avGFP. We show that the fitness landscape of avGFP is narrow, with 3/4 of the derivatives with a single mutation showing reduced fluorescence and half of the derivatives with four mutations being completely non-fluorescent. The narrowness is enhanced by epistasis, which was detected in up to 30% of genotypes with multiple mutations and mostly occurred through the cumulative effect of slightly deleterious mutations causing a threshold-like decrease in protein stability and a concomitant loss of fluorescence. A model of orthologous sequence divergence spanning hundreds of millions of years predicted the extent of epistasis in our data, indicating congruence between the fitness landscape properties at the local and global scales. The characterization of the local fitness landscape of avGFP has important implications for several fields including molecular evolution, population genetics and protein design.","lang":"eng"}],"publist_id":"6799","date_updated":"2021-01-12T08:19:42Z","type":"journal_article","_id":"850","title":"Local fitness landscape of the green fluorescent protein","page":"397 - 401","acknowledgement":"We thank Y. Kulikova and G. Filion for discussion on statistical analysis and I. Osterman, R. Moretti and J. Meiler for technical assistance and M. Friesen for a critical reading of the manuscript. We thank H. Himmelbauer, CRG Genomic Unit and the Russian Science Foundation project (14-50-00150) for sequencing. Experiments were partially carried out using the equipment provided by the IBCH core facility (CKP IBCH). The work was supported by HHMI International Early Career Scientist Program (55007424), the EMBO Young Investigator Programme, MINECO (BFU2012-31329), Spanish Ministry of Economy and Competitiveness Centro de Excelencia Severo Ochoa 2013-2017 grant (SEV-2012-0208), Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat's AGAUR program (2014 SGR 0974), Russian Science Foundation (14-25-00129) and the European Research Council under the European Union's Seventh Framework Programme (FP7/2007-2013, ERC grant agreement, 335980-EinME).","year":"2016","intvolume":"       533","month":"05"},{"title":"Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions","date_updated":"2021-01-12T08:19:54Z","_id":"853","type":"journal_article","month":"04","acknowledgement":"This work was supported by grants from the Russian Scientific Fund (14-14-01115) to Elizaveta Rivkina; from the National Science Foundation (DEB-1442262) to Tatiana Vish- nivetskaya; and from the HHMI International Early Career Scientist Program (55007424), the EMBO Young Investigator Programme, MINECO (BFU2012-31329 and Sev-2012-0208), and the AGAUR program (2014 SGR 0974) to Fyodor Kondrashov. Support from the Russian Scientific Fund (14-14-01115) was allocated for sample collection, gDNA isolation, and analysis of metagenomic data.","intvolume":"        13","year":"2016","issue":"7","page":"2207 - 2219","quality_controlled":0,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"status":"public","author":[{"full_name":"Rivkina, Elizaveta","first_name":"Elizaveta","last_name":"Rivkina"},{"last_name":"Petrovskaya","first_name":"Lada","full_name":"Petrovskaya, Lada E"},{"first_name":"Tatiana","full_name":"Vishnivetskaya, Tatiana A","last_name":"Vishnivetskaya"},{"full_name":"Krivushin, Kirill V","first_name":"Kirill","last_name":"Krivushin"},{"first_name":"Lyubov","full_name":"Shmakova, Lyubov A","last_name":"Shmakova"},{"first_name":"Maria","full_name":"Tutukina, Maria","last_name":"Tutukina"},{"last_name":"Meyers","first_name":"Arthur","full_name":"Meyers, Arthur J"},{"last_name":"Kondrashov","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","first_name":"Fyodor","full_name":"Fyodor Kondrashov"}],"citation":{"mla":"Rivkina, Elizaveta, et al. “Metagenomic Analyses of the Late Pleistocene Permafrost - Additional Tools for Reconstruction of Environmental Conditions.” <i>Biogeosciences</i>, vol. 13, no. 7, European Geosciences Union, 2016, pp. 2207–19, doi:<a href=\"https://doi.org/10.5194/bg-13-2207-2016\">10.5194/bg-13-2207-2016</a>.","short":"E. Rivkina, L. Petrovskaya, T. Vishnivetskaya, K. Krivushin, L. Shmakova, M. Tutukina, A. Meyers, F. Kondrashov, Biogeosciences 13 (2016) 2207–2219.","ieee":"E. Rivkina <i>et al.</i>, “Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions,” <i>Biogeosciences</i>, vol. 13, no. 7. European Geosciences Union, pp. 2207–2219, 2016.","ista":"Rivkina E, Petrovskaya L, Vishnivetskaya T, Krivushin K, Shmakova L, Tutukina M, Meyers A, Kondrashov F. 2016. Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions. Biogeosciences. 13(7), 2207–2219.","apa":"Rivkina, E., Petrovskaya, L., Vishnivetskaya, T., Krivushin, K., Shmakova, L., Tutukina, M., … Kondrashov, F. (2016). Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions. <i>Biogeosciences</i>. European Geosciences Union. <a href=\"https://doi.org/10.5194/bg-13-2207-2016\">https://doi.org/10.5194/bg-13-2207-2016</a>","chicago":"Rivkina, Elizaveta, Lada Petrovskaya, Tatiana Vishnivetskaya, Kirill Krivushin, Lyubov Shmakova, Maria Tutukina, Arthur Meyers, and Fyodor Kondrashov. “Metagenomic Analyses of the Late Pleistocene Permafrost - Additional Tools for Reconstruction of Environmental Conditions.” <i>Biogeosciences</i>. European Geosciences Union, 2016. <a href=\"https://doi.org/10.5194/bg-13-2207-2016\">https://doi.org/10.5194/bg-13-2207-2016</a>.","ama":"Rivkina E, Petrovskaya L, Vishnivetskaya T, et al. Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions. <i>Biogeosciences</i>. 2016;13(7):2207-2219. doi:<a href=\"https://doi.org/10.5194/bg-13-2207-2016\">10.5194/bg-13-2207-2016</a>"},"extern":1,"date_created":"2018-12-11T11:48:51Z","publication_status":"published","volume":13,"doi":"10.5194/bg-13-2207-2016","publist_id":"6793","abstract":[{"lang":"eng","text":"A comparative analysis of the metagenomes from two 30 000-year-old permafrost samples, one of lake-alluvial origin and the other from late Pleistocene Ice Complex sediments, revealed significant differences within microbial communities. The late Pleistocene Ice Complex sediments (which have been characterized by the absence of methane with lower values of redox potential and Fe2+ content) showed a low abundance of methanogenic archaea and enzymes from both the carbon and nitrogen cycles, but a higher abundance of enzymes associated with the sulfur cycle. The metagenomic and geochemical analyses described in the paper provide evidence that the formation of the sampled late Pleistocene Ice Complex sediments likely took place under much more aerobic conditions than lake-alluvial sediments."}],"date_published":"2016-04-01T00:00:00Z","publication":"Biogeosciences","publisher":"European Geosciences Union","day":"01"},{"volume":6,"publication_status":"published","date_created":"2018-12-11T11:49:04Z","doi":"10.1098/rsob.160009","citation":{"ista":"Howe K, Schiffer P, Zielinski J, Wiehe T, Laird G, Marioni J, Soylemez O, Kondrashov F, Leptin M. 2016. Structure and evolutionary history of a large family of NLR proteins in the zebrafish. Open Biology. 6(4).","ieee":"K. Howe <i>et al.</i>, “Structure and evolutionary history of a large family of NLR proteins in the zebrafish,” <i>Open Biology</i>, vol. 6, no. 4. Royal Society, The, 2016.","mla":"Howe, Kerstin, et al. “Structure and Evolutionary History of a Large Family of NLR Proteins in the Zebrafish.” <i>Open Biology</i>, vol. 6, no. 4, Royal Society, The, 2016, doi:<a href=\"https://doi.org/10.1098/rsob.160009\">10.1098/rsob.160009</a>.","short":"K. Howe, P. Schiffer, J. Zielinski, T. Wiehe, G. Laird, J. Marioni, O. Soylemez, F. Kondrashov, M. Leptin, Open Biology 6 (2016).","ama":"Howe K, Schiffer P, Zielinski J, et al. Structure and evolutionary history of a large family of NLR proteins in the zebrafish. <i>Open Biology</i>. 2016;6(4). doi:<a href=\"https://doi.org/10.1098/rsob.160009\">10.1098/rsob.160009</a>","apa":"Howe, K., Schiffer, P., Zielinski, J., Wiehe, T., Laird, G., Marioni, J., … Leptin, M. (2016). Structure and evolutionary history of a large family of NLR proteins in the zebrafish. <i>Open Biology</i>. Royal Society, The. <a href=\"https://doi.org/10.1098/rsob.160009\">https://doi.org/10.1098/rsob.160009</a>","chicago":"Howe, Kerstin, Philipp Schiffer, Julia Zielinski, Thomas Wiehe, Gavin Laird, John Marioni, Onuralp Soylemez, Fyodor Kondrashov, and Maria Leptin. “Structure and Evolutionary History of a Large Family of NLR Proteins in the Zebrafish.” <i>Open Biology</i>. Royal Society, The, 2016. <a href=\"https://doi.org/10.1098/rsob.160009\">https://doi.org/10.1098/rsob.160009</a>."},"extern":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"quality_controlled":0,"status":"public","author":[{"last_name":"Howe","first_name":"Kerstin","full_name":"Howe, Kerstin L"},{"last_name":"Schiffer","first_name":"Philipp","full_name":"Schiffer, Philipp H"},{"full_name":"Zielinski, Julia G","first_name":"Julia","last_name":"Zielinski"},{"first_name":"Thomas","full_name":"Wiehe, Thomas H","last_name":"Wiehe"},{"last_name":"Laird","full_name":"Laird, Gavin K","first_name":"Gavin"},{"last_name":"Marioni","first_name":"John","full_name":"Marioni, John C"},{"first_name":"Onuralp","full_name":"Soylemez, Onuralp","last_name":"Soylemez"},{"last_name":"Kondrashov","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","full_name":"Fyodor Kondrashov","first_name":"Fyodor"},{"last_name":"Leptin","full_name":"Leptin, Maria","first_name":"Maria"}],"publication":"Open Biology","date_published":"2016-01-01T00:00:00Z","day":"01","publisher":"Royal Society, The","publist_id":"6754","abstract":[{"text":"Multicellular eukaryotes have evolved a range of mechanisms for immune recognition. A widespread family involved in innate immunity are the NACHT-domain and leucine-rich-repeat-containing (NLR) proteins.Mammals have small numbers of NLR proteins, whereas in some species, mostly those without adaptive immune systems, NLRs have expanded into very large families.We describe a family of nearly 400NLR proteins encoded in the zebrafish genome. The proteins share a defining overall structure, which arose in fishes after a fusion of the core NLR domains with a B30.2 domain, but can be subdivided into four groups based on their NACHT domains. Gene conversion acting differentially on the NACHT and B30.2 domains has shaped the family and created the groups. Evidence of positive selection in the B30.2 domain indicates that this domain rather than the leucine-rich repeats acts as the pathogen recognition module. In an unusual chromosomal organization, the majority of the genes are located on one chromosome arm, interspersed with other large multigene families, including a new family encoding zinc-finger proteins. The NLR-B30.2 proteins represent a new family with diversity in the specific recognition module that is present in fishes in spite of the parallel existence of an adaptive immune system.","lang":"eng"}],"_id":"896","type":"journal_article","date_updated":"2021-01-12T08:21:32Z","title":"Structure and evolutionary history of a large family of NLR proteins in the zebrafish","issue":"4","month":"01","acknowledgement":"Financial support was provided by EMBO and the DFG SFB 670 'Zellautonome Immunität' to M.L., DFG SFB 680 'Molecular basis of evolutionary innovation' to T.W., DFG SPP1819 to M.L. and T.W., the HHMI International Early Career Scientist Programme (55007424), MINECO (Sev-2012-0208), AGAUR programme (2014 SGR 0974), and an ERC Starting Grant (335980-EinME) to F.K., the European Molecular Biology Laboratory to J.M., the Wellcome Trust to K.H. (zebrafish genome sequencing project) and the National Human Genome Research Institute (NHGRI) grant HG002659 to G.K.L. (gene annotation), and a grant from the Volkswagen Foundation to P.H.S. We thank the CHEOPS support team and the Bundesland Nordrhein Westfalen for making HPC applications freely available at the University of Cologne.","intvolume":"         6","year":"2016"},{"date_updated":"2023-02-23T13:46:55Z","_id":"9019","article_processing_charge":"No","title":"Targeting protein–protein interactions, a wide open field for drug design","oa":1,"publication_identifier":{"issn":["1631-0748"]},"year":"2016","has_accepted_license":"1","doi":"10.1016/j.crci.2015.12.004","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2021-01-19T11:11:54Z","volume":19,"oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"author":[{"last_name":"Bakail","id":"FB3C3F8E-522F-11EA-B186-22963DDC885E","orcid":"0000-0002-9592-1587","full_name":"Bakail, May M","first_name":"May M"},{"last_name":"Ochsenbein","first_name":"Francoise","full_name":"Ochsenbein, Francoise"}],"status":"public","extern":"1","day":"06","date_published":"2016-02-06T00:00:00Z","ddc":["570"],"type":"journal_article","page":"19-27","issue":"1-2","intvolume":"        19","month":"02","article_type":"original","publication_status":"published","quality_controlled":"1","citation":{"apa":"Bakail, M. M., &#38; Ochsenbein, F. (2016). Targeting protein–protein interactions, a wide open field for drug design. <i>Comptes Rendus Chimie</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.crci.2015.12.004\">https://doi.org/10.1016/j.crci.2015.12.004</a>","chicago":"Bakail, May M, and Francoise Ochsenbein. “Targeting Protein–Protein Interactions, a Wide Open Field for Drug Design.” <i>Comptes Rendus Chimie</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.crci.2015.12.004\">https://doi.org/10.1016/j.crci.2015.12.004</a>.","ama":"Bakail MM, Ochsenbein F. Targeting protein–protein interactions, a wide open field for drug design. <i>Comptes Rendus Chimie</i>. 2016;19(1-2):19-27. doi:<a href=\"https://doi.org/10.1016/j.crci.2015.12.004\">10.1016/j.crci.2015.12.004</a>","mla":"Bakail, May M., and Francoise Ochsenbein. “Targeting Protein–Protein Interactions, a Wide Open Field for Drug Design.” <i>Comptes Rendus Chimie</i>, vol. 19, no. 1–2, Elsevier, 2016, pp. 19–27, doi:<a href=\"https://doi.org/10.1016/j.crci.2015.12.004\">10.1016/j.crci.2015.12.004</a>.","short":"M.M. Bakail, F. Ochsenbein, Comptes Rendus Chimie 19 (2016) 19–27.","ista":"Bakail MM, Ochsenbein F. 2016. Targeting protein–protein interactions, a wide open field for drug design. Comptes Rendus Chimie. 19(1–2), 19–27.","ieee":"M. M. Bakail and F. Ochsenbein, “Targeting protein–protein interactions, a wide open field for drug design,” <i>Comptes Rendus Chimie</i>, vol. 19, no. 1–2. Elsevier, pp. 19–27, 2016."},"keyword":["General Chemistry","General Chemical Engineering"],"publisher":"Elsevier","file":[{"checksum":"c262814ffdbfe95900256ab9ff42cdf5","content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_id":"9035","relation":"main_file","file_size":2045260,"date_created":"2021-01-22T12:36:52Z","success":1,"file_name":"2016_ComptesRendueChimie_Bakail.pdf","date_updated":"2021-01-22T12:36:52Z"}],"publication":"Comptes Rendus Chimie","file_date_updated":"2021-01-22T12:36:52Z","abstract":[{"text":"Targeting protein–protein interactions has long been considered as a very difficult if impossible task, but over the past decade, front lines have moved. The number of successful examples is exponentially growing. This review presents a rapid overview of recent advances in this field considering the strengths and weaknesses of the small molecule approaches and alternative strategies such as the selection or design of artificial antibodies, peptides or peptidomimetics.","lang":"eng"},{"lang":"fre","text":"Cibler les interactions protéine–protéine a longtemps été considéré comme une tâche très difficile, voire impossible, mais, depuis les dix dernières années, les lignes ont bougé. Le nombre d’exemples de réussites s’accroît exponentiellement. Cette revue présente un rapide panorama des avancées récentes dans ce domaine, considérant les forces et les faiblesses de l’approche « petite molécule » ainsi que des stratégies alternatives comme la sélection ou le design d’anticorps artificiels, de peptides ou de peptidomimétiques."}],"language":[{"iso":"eng"}]},{"year":"2016","publication_identifier":{"issn":["1744-683X"],"eissn":["1744-6848"]},"oa":1,"article_processing_charge":"No","title":"Dynamic self-assembly of microscale rotors and swimmers","_id":"9051","date_updated":"2023-02-23T13:47:38Z","external_id":{"pmid":["27121100"],"arxiv":["1509.06330"]},"date_published":"2016-05-28T00:00:00Z","day":"28","extern":"1","status":"public","author":[{"last_name":"Davies Wykes","full_name":"Davies Wykes, Megan S.","first_name":"Megan S."},{"id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","last_name":"Palacci","first_name":"Jérémie A","full_name":"Palacci, Jérémie A","orcid":"0000-0002-7253-9465"},{"first_name":"Takuji","full_name":"Adachi, Takuji","last_name":"Adachi"},{"full_name":"Ristroph, Leif","first_name":"Leif","last_name":"Ristroph"},{"last_name":"Zhong","full_name":"Zhong, Xiao","first_name":"Xiao"},{"full_name":"Ward, Michael D.","first_name":"Michael D.","last_name":"Ward"},{"last_name":"Zhang","first_name":"Jun","full_name":"Zhang, Jun"},{"first_name":"Michael J.","full_name":"Shelley, Michael J.","last_name":"Shelley"}],"oa_version":"Preprint","volume":12,"date_created":"2021-02-01T13:44:00Z","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","doi":"10.1039/c5sm03127c","pmid":1,"month":"05","intvolume":"        12","issue":"20","page":"4584-4589","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1509.06330"}],"type":"journal_article","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Biological systems often involve the self-assembly of basic components into complex and functioning structures. Artificial systems that mimic such processes can provide a well-controlled setting to explore the principles involved and also synthesize useful micromachines. Our experiments show that immotile, but active, components self-assemble into two types of structure that exhibit the fundamental forms of motility: translation and rotation. Specifically, micron-scale metallic rods are designed to induce extensile surface flows in the presence of a chemical fuel; these rods interact with each other and pair up to form either a swimmer or a rotor. Such pairs can transition reversibly between these two configurations, leading to kinetics reminiscent of bacterial run-and-tumble motion."}],"publication":"Soft Matter","scopus_import":"1","publisher":"Royal Society of Chemistry","citation":{"chicago":"Davies Wykes, Megan S., Jérémie A Palacci, Takuji Adachi, Leif Ristroph, Xiao Zhong, Michael D. Ward, Jun Zhang, and Michael J. Shelley. “Dynamic Self-Assembly of Microscale Rotors and Swimmers.” <i>Soft Matter</i>. Royal Society of Chemistry, 2016. <a href=\"https://doi.org/10.1039/c5sm03127c\">https://doi.org/10.1039/c5sm03127c</a>.","apa":"Davies Wykes, M. S., Palacci, J. A., Adachi, T., Ristroph, L., Zhong, X., Ward, M. D., … Shelley, M. J. (2016). Dynamic self-assembly of microscale rotors and swimmers. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c5sm03127c\">https://doi.org/10.1039/c5sm03127c</a>","ama":"Davies Wykes MS, Palacci JA, Adachi T, et al. Dynamic self-assembly of microscale rotors and swimmers. <i>Soft Matter</i>. 2016;12(20):4584-4589. doi:<a href=\"https://doi.org/10.1039/c5sm03127c\">10.1039/c5sm03127c</a>","short":"M.S. Davies Wykes, J.A. Palacci, T. Adachi, L. Ristroph, X. Zhong, M.D. Ward, J. Zhang, M.J. Shelley, Soft Matter 12 (2016) 4584–4589.","mla":"Davies Wykes, Megan S., et al. “Dynamic Self-Assembly of Microscale Rotors and Swimmers.” <i>Soft Matter</i>, vol. 12, no. 20, Royal Society of Chemistry, 2016, pp. 4584–89, doi:<a href=\"https://doi.org/10.1039/c5sm03127c\">10.1039/c5sm03127c</a>.","ieee":"M. S. Davies Wykes <i>et al.</i>, “Dynamic self-assembly of microscale rotors and swimmers,” <i>Soft Matter</i>, vol. 12, no. 20. Royal Society of Chemistry, pp. 4584–4589, 2016.","ista":"Davies Wykes MS, Palacci JA, Adachi T, Ristroph L, Zhong X, Ward MD, Zhang J, Shelley MJ. 2016. Dynamic self-assembly of microscale rotors and swimmers. Soft Matter. 12(20), 4584–4589."},"quality_controlled":"1","publication_status":"published","article_type":"original"},{"intvolume":"        12","month":"08","page":"6357-6364","issue":"30","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1609.01497"}],"arxiv":1,"type":"journal_article","abstract":[{"lang":"eng","text":"We describe colloidal Janus particles with metallic and dielectric faces that swim vigorously when illuminated by defocused optical tweezers without consuming any chemical fuel. Rather than wandering randomly, these optically-activated colloidal swimmers circulate back and forth through the beam of light, tracing out sinuous rosette patterns. We propose a model for this mode of light-activated transport that accounts for the observed behavior through a combination of self-thermophoresis and optically-induced torque. In the deterministic limit, this model yields trajectories that resemble rosette curves known as hypotrochoids."}],"language":[{"iso":"eng"}],"publisher":"Royal Society of Chemistry ","scopus_import":"1","publication":"Soft Matter","quality_controlled":"1","keyword":["General Chemistry","Condensed Matter Physics"],"citation":{"short":"H. Moyses, J.A. Palacci, S. Sacanna, D.G. Grier, Soft Matter 12 (2016) 6357–6364.","mla":"Moyses, Henrique, et al. “Trochoidal Trajectories of Self-Propelled Janus Particles in a Diverging Laser Beam.” <i>Soft Matter</i>, vol. 12, no. 30, Royal Society of Chemistry , 2016, pp. 6357–64, doi:<a href=\"https://doi.org/10.1039/c6sm01163b\">10.1039/c6sm01163b</a>.","ista":"Moyses H, Palacci JA, Sacanna S, Grier DG. 2016. Trochoidal trajectories of self-propelled Janus particles in a diverging laser beam. Soft Matter. 12(30), 6357–6364.","ieee":"H. Moyses, J. A. Palacci, S. Sacanna, and D. G. Grier, “Trochoidal trajectories of self-propelled Janus particles in a diverging laser beam,” <i>Soft Matter</i>, vol. 12, no. 30. Royal Society of Chemistry , pp. 6357–6364, 2016.","chicago":"Moyses, Henrique, Jérémie A Palacci, Stefano Sacanna, and David G. Grier. “Trochoidal Trajectories of Self-Propelled Janus Particles in a Diverging Laser Beam.” <i>Soft Matter</i>. Royal Society of Chemistry , 2016. <a href=\"https://doi.org/10.1039/c6sm01163b\">https://doi.org/10.1039/c6sm01163b</a>.","apa":"Moyses, H., Palacci, J. A., Sacanna, S., &#38; Grier, D. G. (2016). Trochoidal trajectories of self-propelled Janus particles in a diverging laser beam. <i>Soft Matter</i>. Royal Society of Chemistry . <a href=\"https://doi.org/10.1039/c6sm01163b\">https://doi.org/10.1039/c6sm01163b</a>","ama":"Moyses H, Palacci JA, Sacanna S, Grier DG. Trochoidal trajectories of self-propelled Janus particles in a diverging laser beam. <i>Soft Matter</i>. 2016;12(30):6357-6364. doi:<a href=\"https://doi.org/10.1039/c6sm01163b\">10.1039/c6sm01163b</a>"},"article_type":"original","publication_status":"published","year":"2016","oa":1,"publication_identifier":{"issn":["1744-683X"],"eissn":["1744-6848"]},"article_processing_charge":"No","title":"Trochoidal trajectories of self-propelled Janus particles in a diverging laser beam","date_updated":"2023-02-23T13:47:40Z","_id":"9052","external_id":{"arxiv":["1609.01497"],"pmid":["27338294"]},"day":"14","date_published":"2016-08-14T00:00:00Z","oa_version":"Preprint","status":"public","author":[{"last_name":"Moyses","full_name":"Moyses, Henrique","first_name":"Henrique"},{"id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d","last_name":"Palacci","first_name":"Jérémie A","full_name":"Palacci, Jérémie A","orcid":"0000-0002-7253-9465"},{"last_name":"Sacanna","first_name":"Stefano","full_name":"Sacanna, Stefano"},{"last_name":"Grier","full_name":"Grier, David G.","first_name":"David G."}],"extern":"1","doi":"10.1039/c6sm01163b","pmid":1,"date_created":"2021-02-01T13:44:15Z","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","volume":12},{"intvolume":"       121","month":"03","page":"3100-3119","issue":"7","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/2015JD023497"}],"type":"journal_article","abstract":[{"text":"Expected changes to future extreme precipitation remain a key uncertainty associated with anthropogenic climate change. Extreme precipitation has been proposed to scale with the precipitable water content in the atmosphere. Assuming constant relative humidity, this implies an increase of precipitation extremes at a rate of about 7% °C−1 globally as indicated by the Clausius‐Clapeyron relationship. Increases faster and slower than Clausius‐Clapeyron have also been reported. In this work, we examine the scaling between precipitation extremes and temperature in the present climate using simulations and measurements from surface weather stations collected in the frame of the HyMeX and MED‐CORDEX programs in Southern France. Of particular interest are departures from the Clausius‐Clapeyron thermodynamic expectation, their spatial and temporal distribution, and their origin. Looking at the scaling of precipitation extreme with temperature, two regimes emerge which form a hook shape: one at low temperatures (cooler than around 15°C) with rates of increase close to the Clausius‐Clapeyron rate and one at high temperatures (warmer than about 15°C) with sub‐Clausius‐Clapeyron rates and most often negative rates. On average, the region of focus does not seem to exhibit super Clausius‐Clapeyron behavior except at some stations, in contrast to earlier studies. Many factors can contribute to departure from Clausius‐Clapeyron scaling: time and spatial averaging, choice of scaling temperature (surface versus condensation level), and precipitation efficiency and vertical velocity in updrafts that are not necessarily constant with temperature. But most importantly, the dynamical contribution of orography to precipitation in the fall over this area during the so‐called “Cevenoles” events, explains the hook shape of the scaling of precipitation extremes.","lang":"eng"}],"language":[{"iso":"eng"}],"publisher":"American Geophysical Union","publication":"Journal of Geophysical Research: Atmospheres","citation":{"ieee":"P. Drobinski, B. Alonzo, S. Bastin, N. D. Silva, and C. J. Muller, “Scaling of precipitation extremes with temperature in the French Mediterranean region: What explains the hook shape?,” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 121, no. 7. American Geophysical Union, pp. 3100–3119, 2016.","ista":"Drobinski P, Alonzo B, Bastin S, Silva ND, Muller CJ. 2016. Scaling of precipitation extremes with temperature in the French Mediterranean region: What explains the hook shape? Journal of Geophysical Research: Atmospheres. 121(7), 3100–3119.","short":"P. Drobinski, B. Alonzo, S. Bastin, N.D. Silva, C.J. Muller, Journal of Geophysical Research: Atmospheres 121 (2016) 3100–3119.","mla":"Drobinski, P., et al. “Scaling of Precipitation Extremes with Temperature in the French Mediterranean Region: What Explains the Hook Shape?” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 121, no. 7, American Geophysical Union, 2016, pp. 3100–19, doi:<a href=\"https://doi.org/10.1002/2015jd023497\">10.1002/2015jd023497</a>.","ama":"Drobinski P, Alonzo B, Bastin S, Silva ND, Muller CJ. Scaling of precipitation extremes with temperature in the French Mediterranean region: What explains the hook shape? <i>Journal of Geophysical Research: Atmospheres</i>. 2016;121(7):3100-3119. doi:<a href=\"https://doi.org/10.1002/2015jd023497\">10.1002/2015jd023497</a>","apa":"Drobinski, P., Alonzo, B., Bastin, S., Silva, N. D., &#38; Muller, C. J. (2016). Scaling of precipitation extremes with temperature in the French Mediterranean region: What explains the hook shape? <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union. <a href=\"https://doi.org/10.1002/2015jd023497\">https://doi.org/10.1002/2015jd023497</a>","chicago":"Drobinski, P., B. Alonzo, S. Bastin, N. Da Silva, and Caroline J Muller. “Scaling of Precipitation Extremes with Temperature in the French Mediterranean Region: What Explains the Hook Shape?” <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union, 2016. <a href=\"https://doi.org/10.1002/2015jd023497\">https://doi.org/10.1002/2015jd023497</a>."},"quality_controlled":"1","article_type":"original","publication_status":"published","year":"2016","oa":1,"publication_identifier":{"issn":["2169-897X","2169-8996"]},"article_processing_charge":"No","title":"Scaling of precipitation extremes with temperature in the French Mediterranean region: What explains the hook shape?","_id":"9140","date_updated":"2022-01-24T13:41:02Z","day":"16","date_published":"2016-03-16T00:00:00Z","oa_version":"Published Version","extern":"1","status":"public","author":[{"last_name":"Drobinski","first_name":"P.","full_name":"Drobinski, P."},{"last_name":"Alonzo","first_name":"B.","full_name":"Alonzo, B."},{"last_name":"Bastin","full_name":"Bastin, S.","first_name":"S."},{"first_name":"N. Da","full_name":"Silva, N. Da","last_name":"Silva"},{"id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","last_name":"Muller","full_name":"Muller, Caroline J","first_name":"Caroline J","orcid":"0000-0001-5836-5350"}],"doi":"10.1002/2015jd023497","volume":121,"date_created":"2021-02-15T14:21:16Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9"},{"year":"2016","acknowledgement":"J.M.C. thanks the 1851 Royal Commission of the Great Exhibition for a Design Fellowship, hosted by Argonne National Laboratory where work done was supported by the DOE Office of Science, Office of Basic Energy Sciences, under Contract No. DE-AC02-06CH11357. T.-C.L acknowledges the Taiwanese Government for a Studying Abroad Scholarship. C.M.A is indebted to the EPSRC UK for a DTA Ph.D. studentship (Grants EP/J500380/1 and EP/L504920/1). Y.T. is grateful for a Cavendish-NUDT Scholarship. The Swiss-Norwegian Collaborative Research Group at the ESRF, Grenoble, France, is thanked for access to synchrotron facilities. The OPAL reactor, ANSTO, Australia, is acknowledged for access to neutron scattering facilities via a program proposal, ID 1236. J.P-M. is grateful to Skidmore College for supporting this work via a full-year sabbatical with enhancement. All authors thank the EPSRC UK National Service for Computational Chemistry Software (NSCCS) and acknowledge contributions from its staff in supporting this work.","intvolume":"       120","month":"12","page":"29439 - 29448","issue":"51","title":"Relating the structure of geminal Amido Esters to their molecular hyperpolarizability","date_updated":"2021-01-12T08:21:55Z","_id":"92","type":"journal_article","abstract":[{"lang":"eng","text":"Advanced organic nonlinear optical (NLO) materials have attracted increasing attention due to their multitude of applications in modern telecommunication devices. Arguably the most important advantage of organic NLO materials, relative to traditionally used inorganic NLO materials, is their short optical response time. Geminal amido esters with their donor-π-acceptor (D-π-A) architecture exhibit high levels of electron delocalization and substantial intramolecular charge transfer, which should endow these materials with short optical response times and large molecular (hyper)polarizabilities. In order to test this hypothesis, the linear and second-order nonlinear optical properties of five geminal amido esters, (E)-ethyl 3-(X-phenylamino)-2-(Y-phenylcarbamoyl)acrylate (1, X = 4-H, Y = 4-H; 2, X = 4-CH3, Y = 4-CH3; 3, X = 4-NO2, Y = 2,5-OCH3; 4, X = 2-Cl, Y = 2-Cl; 5, X = 4-Cl, Y = 4-Cl) were synthesized and characterized, whereby NLO structure-function relationships were established including intramolecular charge transfer characteristics, crystal field effects, and molecular first hyperpolarizabilities (β). Given the typically large errors (10-30%) associated with the determination of β coefficients, three independent methods were used: (i) density functional theory, (ii) hyper-Rayleigh scattering, and (iii) high-resolution X-ray diffraction data analysis based on multipolar modeling of electron densities at each atom. These three methods delivered consistent values of β, and based on these results, 3 should hold the most promise for NLO applications. The correlation between the molecular structure of these geminal amido esters and their linear and nonlinear optical properties thus provide molecular design guidelines for organic NLO materials; this leads to the ultimate goal of generating bespoke organic molecules to suit a given NLO device application."}],"publist_id":"7962","language":[{"iso":"eng"}],"publisher":"American Chemical Society","day":"05","date_published":"2016-12-05T00:00:00Z","publication":"Journal of Physical Chemistry C","oa_version":"None","quality_controlled":"1","author":[{"full_name":"Cole, Jaqueline","first_name":"Jaqueline","last_name":"Cole"},{"last_name":"Lin","first_name":"Tzechia","full_name":"Lin, Tzechia"},{"last_name":"Ashcroft","full_name":"Ashcroft, Christopher","first_name":"Christopher"},{"full_name":"Pérez Moreno, Javier","first_name":"Javier","last_name":"Pérez Moreno"},{"last_name":"Tan","first_name":"Yizhou","full_name":"Tan, Yizhou"},{"full_name":"Venkatesan, Perumal","first_name":"Perumal","last_name":"Venkatesan"},{"full_name":"Higginbotham, Andrew P","first_name":"Andrew P","orcid":"0000-0003-2607-2363","id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","last_name":"Higginbotham"},{"first_name":"Philip","full_name":"Pattison, Philip","last_name":"Pattison"},{"last_name":"Edwards","first_name":"Alison","full_name":"Edwards, Alison"},{"last_name":"Piltz","first_name":"Ross","full_name":"Piltz, Ross"},{"last_name":"Clays","full_name":"Clays, Koen","first_name":"Koen"},{"full_name":"Ilangovan, Andivelu","first_name":"Andivelu","last_name":"Ilangovan"}],"status":"public","extern":"1","citation":{"ista":"Cole J, Lin T, Ashcroft C, Pérez Moreno J, Tan Y, Venkatesan P, Higginbotham AP, Pattison P, Edwards A, Piltz R, Clays K, Ilangovan A. 2016. Relating the structure of geminal Amido Esters to their molecular hyperpolarizability. Journal of Physical Chemistry C. 120(51), 29439–29448.","ieee":"J. Cole <i>et al.</i>, “Relating the structure of geminal Amido Esters to their molecular hyperpolarizability,” <i>Journal of Physical Chemistry C</i>, vol. 120, no. 51. American Chemical Society, pp. 29439–29448, 2016.","mla":"Cole, Jaqueline, et al. “Relating the Structure of Geminal Amido Esters to Their Molecular Hyperpolarizability.” <i>Journal of Physical Chemistry C</i>, vol. 120, no. 51, American Chemical Society, 2016, pp. 29439–48, doi:<a href=\"https://doi.org/10.1021/acs.jpcc.6b10724\">10.1021/acs.jpcc.6b10724</a>.","short":"J. Cole, T. Lin, C. Ashcroft, J. Pérez Moreno, Y. Tan, P. Venkatesan, A.P. Higginbotham, P. Pattison, A. Edwards, R. Piltz, K. Clays, A. Ilangovan, Journal of Physical Chemistry C 120 (2016) 29439–29448.","ama":"Cole J, Lin T, Ashcroft C, et al. Relating the structure of geminal Amido Esters to their molecular hyperpolarizability. <i>Journal of Physical Chemistry C</i>. 2016;120(51):29439-29448. doi:<a href=\"https://doi.org/10.1021/acs.jpcc.6b10724\">10.1021/acs.jpcc.6b10724</a>","chicago":"Cole, Jaqueline, Tzechia Lin, Christopher Ashcroft, Javier Pérez Moreno, Yizhou Tan, Perumal Venkatesan, Andrew P Higginbotham, et al. “Relating the Structure of Geminal Amido Esters to Their Molecular Hyperpolarizability.” <i>Journal of Physical Chemistry C</i>. American Chemical Society, 2016. <a href=\"https://doi.org/10.1021/acs.jpcc.6b10724\">https://doi.org/10.1021/acs.jpcc.6b10724</a>.","apa":"Cole, J., Lin, T., Ashcroft, C., Pérez Moreno, J., Tan, Y., Venkatesan, P., … Ilangovan, A. (2016). Relating the structure of geminal Amido Esters to their molecular hyperpolarizability. <i>Journal of Physical Chemistry C</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jpcc.6b10724\">https://doi.org/10.1021/acs.jpcc.6b10724</a>"},"doi":"10.1021/acs.jpcc.6b10724","publication_status":"published","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:44:35Z","volume":120},{"date_updated":"2021-01-12T08:21:59Z","_id":"930","type":"journal_article","article_processing_charge":"No","title":"Defining the clonal dynamics leading to mouse skin tumour initiation","page":"298 - 303","issue":"7616","acknowledgement":"We would like to thank J.-M. Vanderwinden and the LiMiF for the help with confocal microscopy. C.B. is an investigator of WELBIO. A.S.-D. and J.C.L. are supported by a fellowship of the FNRS and FRIA respectively. B.D.S. and E.H. are supported by the Wellcome Trust (grant numbers 098357/Z/12/Z and 110326/Z/15/Z). E.H. is supported by a fellowship from Trinity College, Cambridge. This work was supported by the FNRS, the IUAP program, the Fondation contre le Cancer, the ULB fondation, the foundation Bettencourt Schueller, the foundation Baillet Latour, a consolidator grant of the European Research Council.","year":"2016","intvolume":"       536","month":"07","doi":"10.1038/nature19069","date_created":"2018-12-11T11:49:15Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":536,"oa_version":"None","author":[{"last_name":"Sánchez Danés","first_name":"Adriana","full_name":"Sánchez Danés, Adriana"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo","first_name":"Edouard B","full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561"},{"first_name":"Jean","full_name":"Larsimont, Jean","last_name":"Larsimont"},{"last_name":"Liagre","full_name":"Liagre, Mélanie","first_name":"Mélanie"},{"last_name":"Youssef","first_name":"Khalil","full_name":"Youssef, Khalil"},{"full_name":"Simons, Benjamin","first_name":"Benjamin","last_name":"Simons"},{"last_name":"Blanpain","full_name":"Blanpain, Cédric","first_name":"Cédric"}],"status":"public","extern":"1","citation":{"ieee":"A. Sánchez Danés <i>et al.</i>, “Defining the clonal dynamics leading to mouse skin tumour initiation,” <i>Nature</i>, vol. 536, no. 7616. Nature Publishing Group, pp. 298–303, 2016.","ista":"Sánchez Danés A, Hannezo EB, Larsimont J, Liagre M, Youssef K, Simons B, Blanpain C. 2016. Defining the clonal dynamics leading to mouse skin tumour initiation. Nature. 536(7616), 298–303.","mla":"Sánchez Danés, Adriana, et al. “Defining the Clonal Dynamics Leading to Mouse Skin Tumour Initiation.” <i>Nature</i>, vol. 536, no. 7616, Nature Publishing Group, 2016, pp. 298–303, doi:<a href=\"https://doi.org/10.1038/nature19069\">10.1038/nature19069</a>.","short":"A. Sánchez Danés, E.B. Hannezo, J. Larsimont, M. Liagre, K. Youssef, B. Simons, C. Blanpain, Nature 536 (2016) 298–303.","ama":"Sánchez Danés A, Hannezo EB, Larsimont J, et al. Defining the clonal dynamics leading to mouse skin tumour initiation. <i>Nature</i>. 2016;536(7616):298-303. doi:<a href=\"https://doi.org/10.1038/nature19069\">10.1038/nature19069</a>","chicago":"Sánchez Danés, Adriana, Edouard B Hannezo, Jean Larsimont, Mélanie Liagre, Khalil Youssef, Benjamin Simons, and Cédric Blanpain. “Defining the Clonal Dynamics Leading to Mouse Skin Tumour Initiation.” <i>Nature</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nature19069\">https://doi.org/10.1038/nature19069</a>.","apa":"Sánchez Danés, A., Hannezo, E. B., Larsimont, J., Liagre, M., Youssef, K., Simons, B., &#38; Blanpain, C. (2016). Defining the clonal dynamics leading to mouse skin tumour initiation. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature19069\">https://doi.org/10.1038/nature19069</a>"},"publisher":"Nature Publishing Group","day":"08","date_published":"2016-07-08T00:00:00Z","publication":"Nature","abstract":[{"text":"The changes in cell dynamics after oncogenic mutation that lead to the development of tumours are currently unknown. Here, using skin epidermis as a model, we assessed the effect of oncogenic hedgehog signalling in distinct cell populations and their capacity to induce basal cell carcinoma, the most frequent cancer in humans. We found that only stem cells, and not progenitors, initiated tumour formation upon oncogenic hedgehog signalling. This difference was due to the hierarchical organization of tumour growth in oncogene-targeted stem cells, characterized by an increase in symmetric self-renewing divisions and a higher p53-dependent resistance to apoptosis, leading to rapid clonal expansion and progression into invasive tumours. Our work reveals that the capacity of oncogene-targeted cells to induce tumour formation is dependent not only on their long-term survival and expansion, but also on the specific clonal dynamics of the cancer cell of origin.","lang":"eng"}],"language":[{"iso":"eng"}],"publist_id":"6508"},{"date_updated":"2021-01-12T08:22:00Z","_id":"931","type":"journal_article","article_processing_charge":"No","title":"Interplay of migratory and division forces as a generic mechanism for stem cell patterns","issue":"2","acknowledgement":"The authors thank Jacques Prost and Pierre Recho for helpful discussions, as well as the Labex CelTisPhyBio and all its members. E.H. acknowledges for funding a Young Researcher Prize from the Bettencourt-Schueller Fondation, and a Junior Research Fellowship from Trinity College, Cambridge.","intvolume":"        93","year":"2016","month":"02","doi":"10.1103/PhysRevE.93.022405","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2018-12-11T11:49:16Z","volume":93,"oa_version":"None","author":[{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo","full_name":"Hannezo, Edouard B","first_name":"Edouard B","orcid":"0000-0001-6005-1561"},{"last_name":"Coucke","full_name":"Coucke, Alice","first_name":"Alice"},{"full_name":"Joanny, Jean","first_name":"Jean","last_name":"Joanny"}],"status":"public","citation":{"ama":"Hannezo EB, Coucke A, Joanny J. Interplay of migratory and division forces as a generic mechanism for stem cell patterns. <i>Physical Review E Statistical Nonlinear and Soft Matter Physics</i>. 2016;93(2). doi:<a href=\"https://doi.org/10.1103/PhysRevE.93.022405\">10.1103/PhysRevE.93.022405</a>","chicago":"Hannezo, Edouard B, Alice Coucke, and Jean Joanny. “Interplay of Migratory and Division Forces as a Generic Mechanism for Stem Cell Patterns.” <i>Physical Review E Statistical Nonlinear and Soft Matter Physics</i>. American Institute of Physics, 2016. <a href=\"https://doi.org/10.1103/PhysRevE.93.022405\">https://doi.org/10.1103/PhysRevE.93.022405</a>.","apa":"Hannezo, E. B., Coucke, A., &#38; Joanny, J. (2016). Interplay of migratory and division forces as a generic mechanism for stem cell patterns. <i>Physical Review E Statistical Nonlinear and Soft Matter Physics</i>. American Institute of Physics. <a href=\"https://doi.org/10.1103/PhysRevE.93.022405\">https://doi.org/10.1103/PhysRevE.93.022405</a>","ieee":"E. B. Hannezo, A. Coucke, and J. Joanny, “Interplay of migratory and division forces as a generic mechanism for stem cell patterns,” <i>Physical Review E Statistical Nonlinear and Soft Matter Physics</i>, vol. 93, no. 2. American Institute of Physics, 2016.","ista":"Hannezo EB, Coucke A, Joanny J. 2016. Interplay of migratory and division forces as a generic mechanism for stem cell patterns. Physical Review E Statistical Nonlinear and Soft Matter Physics. 93(2).","short":"E.B. Hannezo, A. Coucke, J. Joanny, Physical Review E Statistical Nonlinear and Soft Matter Physics 93 (2016).","mla":"Hannezo, Edouard B., et al. “Interplay of Migratory and Division Forces as a Generic Mechanism for Stem Cell Patterns.” <i>Physical Review E Statistical Nonlinear and Soft Matter Physics</i>, vol. 93, no. 2, American Institute of Physics, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevE.93.022405\">10.1103/PhysRevE.93.022405</a>."},"extern":"1","day":"28","publisher":"American Institute of Physics","date_published":"2016-02-28T00:00:00Z","publication":"Physical Review E Statistical Nonlinear and Soft Matter Physics","abstract":[{"text":"In many adult tissues, stem cells and differentiated cells are not homogeneously distributed: stem cells are arranged in periodic &quot;niches,&quot; and differentiated cells are constantly produced and migrate out of these niches. In this article, we provide a general theoretical framework to study mixtures of dividing and actively migrating particles, which we apply to biological tissues. We show in particular that the interplay between the stresses arising from active cell migration and stem cell division give rise to robust stem cell patterns. The instability of the tissue leads to spatial patterns which are either steady or oscillating in time. The wavelength of the instability has an order of magnitude consistent with the biological observations. We also discuss the implications of these results for future in vitro and in vivo experiments.","lang":"eng"}],"publist_id":"6509","language":[{"iso":"eng"}]},{"date_updated":"2021-01-12T08:22:00Z","_id":"932","type":"journal_article","article_processing_charge":"No","title":"Emergence of an Apical Epithelial Cell Surface In Vivo","issue":"1","page":"24 - 35","month":"01","year":"2016","intvolume":"        36","acknowledgement":"We thank J. Bear, B. Goldstein, A. Ewald, and D. Soroldoni for critical reading. This work was funded by an EMBO Long Term Fellowship to J.S., a Research Fellowship from Trinity College, Cambridge and a Bettencourt-Schueller Foundation Young Researcher Prize to E.H., a Cancer Institute NSW Early Career Researcher fellowship (13/ECF/1–25) and a Cancer Australia/Cure Cancer Australia Foundation project grant (1070498) to M.B., and grants from the NHLBI (HL117164) and NIGMS (GM074104) to J.B.W. J.B.W. was an early career scientist of the Howard Hughes Medical Institute. This work was initiated at the New Quantitative Approaches to Morphogenesis Workshop at UCSB, which is funded in part by the National Science Foundation (PHY11-25915) and the NIGMS (GM067110-05).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:49:16Z","publication_status":"published","volume":36,"doi":"10.1016/j.devcel.2015.12.013","author":[{"full_name":"Sedzinski, Jakub","first_name":"Jakub","last_name":"Sedzinski"},{"last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","first_name":"Edouard B","full_name":"Hannezo, Edouard B"},{"first_name":"Fan","full_name":"Tu, Fan","last_name":"Tu"},{"last_name":"Biro","full_name":"Biro, Maté","first_name":"Maté"},{"last_name":"Wallingford","full_name":"Wallingford, John","first_name":"John"}],"status":"public","extern":"1","citation":{"apa":"Sedzinski, J., Hannezo, E. B., Tu, F., Biro, M., &#38; Wallingford, J. (2016). Emergence of an Apical Epithelial Cell Surface In Vivo. <i>Developmental Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.devcel.2015.12.013\">https://doi.org/10.1016/j.devcel.2015.12.013</a>","chicago":"Sedzinski, Jakub, Edouard B Hannezo, Fan Tu, Maté Biro, and John Wallingford. “Emergence of an Apical Epithelial Cell Surface In Vivo.” <i>Developmental Cell</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.devcel.2015.12.013\">https://doi.org/10.1016/j.devcel.2015.12.013</a>.","ama":"Sedzinski J, Hannezo EB, Tu F, Biro M, Wallingford J. Emergence of an Apical Epithelial Cell Surface In Vivo. <i>Developmental Cell</i>. 2016;36(1):24-35. doi:<a href=\"https://doi.org/10.1016/j.devcel.2015.12.013\">10.1016/j.devcel.2015.12.013</a>","short":"J. Sedzinski, E.B. Hannezo, F. Tu, M. Biro, J. Wallingford, Developmental Cell 36 (2016) 24–35.","mla":"Sedzinski, Jakub, et al. “Emergence of an Apical Epithelial Cell Surface In Vivo.” <i>Developmental Cell</i>, vol. 36, no. 1, Cell Press, 2016, pp. 24–35, doi:<a href=\"https://doi.org/10.1016/j.devcel.2015.12.013\">10.1016/j.devcel.2015.12.013</a>.","ista":"Sedzinski J, Hannezo EB, Tu F, Biro M, Wallingford J. 2016. Emergence of an Apical Epithelial Cell Surface In Vivo. Developmental Cell. 36(1), 24–35.","ieee":"J. Sedzinski, E. B. Hannezo, F. Tu, M. Biro, and J. Wallingford, “Emergence of an Apical Epithelial Cell Surface In Vivo,” <i>Developmental Cell</i>, vol. 36, no. 1. Cell Press, pp. 24–35, 2016."},"oa_version":"None","date_published":"2016-01-12T00:00:00Z","publication":"Developmental Cell","day":"12","publisher":"Cell Press","language":[{"iso":"eng"}],"publist_id":"6510","abstract":[{"text":"Epithelial sheets are crucial components of all metazoan animals, enclosing organs and protecting the animal from its environment. Epithelial homeostasis poses unique challenges, as addition of new cells and loss of old cells must be achieved without disrupting the fluid-tight barrier and apicobasal polarity of the epithelium. Several studies have identified cell biological mechanisms underlying extrusion of cells from epithelia, but far less is known of the converse mechanism by which new cells are added. Here, we combine molecular, pharmacological, and laser-dissection experiments with theoretical modeling to characterize forces driving emergence of an apical surface as single nascent cells are added to a vertebrate epithelium in vivo. We find that this process involves the interplay between cell-autonomous actin-generated pushing forces in the emerging cell and mechanical properties of neighboring cells. Our findings define the forces driving this cell behavior, contributing to a more comprehensive understanding of epithelial homeostasis.","lang":"eng"}]},{"date_updated":"2021-01-12T08:11:40Z","_id":"7068","title":"Magnetic torque anomaly in the quantum limit of Weyl semimetals","article_processing_charge":"No","publication_identifier":{"issn":["2041-1723"]},"oa":1,"has_accepted_license":"1","year":"2016","date_created":"2019-11-19T13:20:53Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":7,"doi":"10.1038/ncomms12492","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"author":[{"first_name":"Philip J. W.","full_name":"Moll, Philip J. W.","last_name":"Moll"},{"last_name":"Potter","full_name":"Potter, Andrew C.","first_name":"Andrew C."},{"first_name":"Nityan L.","full_name":"Nair, Nityan L.","last_name":"Nair"},{"last_name":"Ramshaw","full_name":"Ramshaw, B. J.","first_name":"B. J."},{"orcid":"0000-0001-9760-3147","first_name":"Kimberly A","full_name":"Modic, Kimberly A","last_name":"Modic","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425"},{"first_name":"Scott","full_name":"Riggs, Scott","last_name":"Riggs"},{"last_name":"Zeng","full_name":"Zeng, Bin","first_name":"Bin"},{"first_name":"Nirmal J.","full_name":"Ghimire, Nirmal J.","last_name":"Ghimire"},{"last_name":"Bauer","full_name":"Bauer, Eric D.","first_name":"Eric D."},{"last_name":"Kealhofer","full_name":"Kealhofer, Robert","first_name":"Robert"},{"last_name":"Ronning","full_name":"Ronning, Filip","first_name":"Filip"},{"last_name":"Analytis","full_name":"Analytis, James G.","first_name":"James G."}],"status":"public","extern":"1","oa_version":"Published Version","date_published":"2016-08-22T00:00:00Z","day":"22","ddc":["530"],"type":"journal_article","month":"08","intvolume":"         7","article_number":"12492","publication_status":"published","article_type":"original","quality_controlled":"1","citation":{"short":"P.J.W. Moll, A.C. Potter, N.L. Nair, B.J. Ramshaw, K.A. Modic, S. Riggs, B. Zeng, N.J. Ghimire, E.D. Bauer, R. Kealhofer, F. Ronning, J.G. Analytis, Nature Communications 7 (2016).","mla":"Moll, Philip J. W., et al. “Magnetic Torque Anomaly in the Quantum Limit of Weyl Semimetals.” <i>Nature Communications</i>, vol. 7, 12492, Springer Nature, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms12492\">10.1038/ncomms12492</a>.","ista":"Moll PJW, Potter AC, Nair NL, Ramshaw BJ, Modic KA, Riggs S, Zeng B, Ghimire NJ, Bauer ED, Kealhofer R, Ronning F, Analytis JG. 2016. Magnetic torque anomaly in the quantum limit of Weyl semimetals. Nature Communications. 7, 12492.","ieee":"P. J. W. Moll <i>et al.</i>, “Magnetic torque anomaly in the quantum limit of Weyl semimetals,” <i>Nature Communications</i>, vol. 7. Springer Nature, 2016.","apa":"Moll, P. J. W., Potter, A. C., Nair, N. L., Ramshaw, B. J., Modic, K. A., Riggs, S., … Analytis, J. G. (2016). Magnetic torque anomaly in the quantum limit of Weyl semimetals. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ncomms12492\">https://doi.org/10.1038/ncomms12492</a>","chicago":"Moll, Philip J. W., Andrew C. Potter, Nityan L. Nair, B. J. Ramshaw, Kimberly A Modic, Scott Riggs, Bin Zeng, et al. “Magnetic Torque Anomaly in the Quantum Limit of Weyl Semimetals.” <i>Nature Communications</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1038/ncomms12492\">https://doi.org/10.1038/ncomms12492</a>.","ama":"Moll PJW, Potter AC, Nair NL, et al. Magnetic torque anomaly in the quantum limit of Weyl semimetals. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms12492\">10.1038/ncomms12492</a>"},"file":[{"date_created":"2019-11-26T12:52:19Z","file_size":663911,"date_updated":"2020-07-14T12:47:48Z","file_name":"2016_NatureComm_Moll.pdf","relation":"main_file","file_id":"7114","content_type":"application/pdf","checksum":"e3272ed18d22187406b30be48a56e7b2","access_level":"open_access","creator":"dernst"}],"publication":"Nature Communications","file_date_updated":"2020-07-14T12:47:48Z","publisher":"Springer Nature","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Electrons in materials with linear dispersion behave as massless Weyl- or Dirac-quasiparticles, and continue to intrigue due to their close resemblance to elusive ultra-relativistic particles as well as their potential for future electronics. Yet the experimental signatures of Weyl-fermions are often subtle and indirect, in particular if they coexist with conventional, massive quasiparticles. Here we show a pronounced anomaly in the magnetic torque of the Weyl semimetal NbAs upon entering the quantum limit state in high magnetic fields. The torque changes sign in the quantum limit, signalling a reversal of the magnetic anisotropy that can be directly attributed to the topological nature of the Weyl electrons. Our results establish that anomalous quantum limit torque measurements provide a direct experimental method to identify and distinguish Weyl and Dirac systems."}]},{"date_updated":"2021-01-12T08:11:41Z","type":"journal_article","_id":"7069","title":"Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor","article_processing_charge":"No","publication_identifier":{"issn":["2041-1723"]},"month":"07","year":"2016","intvolume":"         7","article_number":"12244","publication_status":"published","date_created":"2019-11-19T13:21:23Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":7,"article_type":"original","doi":"10.1038/ncomms12244","quality_controlled":"1","author":[{"full_name":"Chan, M. K.","first_name":"M. K.","last_name":"Chan"},{"last_name":"Harrison","full_name":"Harrison, N.","first_name":"N."},{"last_name":"McDonald","full_name":"McDonald, R. D.","first_name":"R. D."},{"last_name":"Ramshaw","first_name":"B. J.","full_name":"Ramshaw, B. J."},{"first_name":"Kimberly A","full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","last_name":"Modic"},{"first_name":"N.","full_name":"Barišić, N.","last_name":"Barišić"},{"full_name":"Greven, M.","first_name":"M.","last_name":"Greven"}],"status":"public","citation":{"apa":"Chan, M. K., Harrison, N., McDonald, R. D., Ramshaw, B. J., Modic, K. A., Barišić, N., &#38; Greven, M. (2016). Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ncomms12244\">https://doi.org/10.1038/ncomms12244</a>","chicago":"Chan, M. K., N. Harrison, R. D. McDonald, B. J. Ramshaw, Kimberly A Modic, N. Barišić, and M. Greven. “Single Reconstructed Fermi Surface Pocket in an Underdoped Single-Layer Cuprate Superconductor.” <i>Nature Communications</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1038/ncomms12244\">https://doi.org/10.1038/ncomms12244</a>.","ama":"Chan MK, Harrison N, McDonald RD, et al. Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms12244\">10.1038/ncomms12244</a>","mla":"Chan, M. K., et al. “Single Reconstructed Fermi Surface Pocket in an Underdoped Single-Layer Cuprate Superconductor.” <i>Nature Communications</i>, vol. 7, 12244, Springer Nature, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms12244\">10.1038/ncomms12244</a>.","short":"M.K. Chan, N. Harrison, R.D. McDonald, B.J. Ramshaw, K.A. Modic, N. Barišić, M. Greven, Nature Communications 7 (2016).","ista":"Chan MK, Harrison N, McDonald RD, Ramshaw BJ, Modic KA, Barišić N, Greven M. 2016. Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor. Nature Communications. 7, 12244.","ieee":"M. K. Chan <i>et al.</i>, “Single reconstructed Fermi surface pocket in an underdoped single-layer cuprate superconductor,” <i>Nature Communications</i>, vol. 7. Springer Nature, 2016."},"extern":"1","oa_version":"Published Version","date_published":"2016-07-22T00:00:00Z","publication":"Nature Communications","day":"22","publisher":"Springer Nature","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"The observation of a reconstructed Fermi surface via quantum oscillations in hole-doped cuprates opened a path towards identifying broken symmetry states in the pseudogap regime. However, such an identification has remained inconclusive due to the multi-frequency quantum oscillation spectra and complications accounting for bilayer effects in most studies. We overcome these impediments with high-resolution measurements on the structurally simpler cuprate HgBa2CuO4+δ (Hg1201), which features one CuO2 plane per primitive unit cell. We find only a single oscillatory component with no signatures of magnetic breakdown tunnelling to additional orbits. Therefore, the Fermi surface comprises a single quasi-two-dimensional pocket. Quantitative modelling of these results indicates that a biaxial charge density wave within each CuO2 plane is responsible for the reconstruction and rules out criss-crossed charge stripes between layers as a viable alternative in Hg1201. Lastly, we determine that the characteristic gap between reconstructed pockets is a significant fraction of the pseudogap energy."}]}]