[{"language":[{"iso":"eng"}],"date_published":"2017-03-01T00:00:00Z","quality_controlled":"1","external_id":{"isi":["000388430000011"]},"date_updated":"2023-09-20T11:15:31Z","page":"144 - 170","file":[{"date_updated":"2020-07-14T12:44:42Z","file_size":708657,"file_id":"4885","creator":"system","date_created":"2018-12-12T10:11:30Z","access_level":"open_access","checksum":"91271b23cf884d7c06d33bef0cd623b1","relation":"main_file","file_name":"IST-2016-717-v1+1_1-s2.0-S0022000016300897-main.pdf","content_type":"application/pdf"}],"_id":"1294","month":"03","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","has_accepted_license":"1","publist_id":"6009","oa_version":"Published Version","year":"2017","title":"Trading performance for stability in Markov decision processes","status":"public","doi":"10.1016/j.jcss.2016.09.009","publisher":"Elsevier","ddc":["004","006"],"file_date_updated":"2020-07-14T12:44:42Z","author":[{"full_name":"Brázdil, Tomáš","last_name":"Brázdil","first_name":"Tomáš"},{"orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","last_name":"Chatterjee"},{"first_name":"Vojtěch","last_name":"Forejt","full_name":"Forejt, Vojtěch"},{"full_name":"Kučera, Antonín","last_name":"Kučera","first_name":"Antonín"}],"type":"journal_article","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","intvolume":"        84","volume":84,"date_created":"2018-12-11T11:51:12Z","project":[{"call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425","grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"call_identifier":"FWF","name":"Game Theory","grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425"},{"grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"abstract":[{"lang":"eng","text":"We study controller synthesis problems for finite-state Markov decision processes, where the objective is to optimize the expected mean-payoff performance and stability (also known as variability in the literature). We argue that the basic notion of expressing the stability using the statistical variance of the mean payoff is sometimes insufficient, and propose an alternative definition. We show that a strategy ensuring both the expected mean payoff and the variance below given bounds requires randomization and memory, under both the above definitions. We then show that the problem of finding such a strategy can be expressed as a set of constraints."}],"publication_status":"published","ec_funded":1,"oa":1,"publication":"Journal of Computer and System Sciences","citation":{"short":"T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, Journal of Computer and System Sciences 84 (2017) 144–170.","ista":"Brázdil T, Chatterjee K, Forejt V, Kučera A. 2017. Trading performance for stability in Markov decision processes. Journal of Computer and System Sciences. 84, 144–170.","ama":"Brázdil T, Chatterjee K, Forejt V, Kučera A. Trading performance for stability in Markov decision processes. <i>Journal of Computer and System Sciences</i>. 2017;84:144-170. doi:<a href=\"https://doi.org/10.1016/j.jcss.2016.09.009\">10.1016/j.jcss.2016.09.009</a>","apa":"Brázdil, T., Chatterjee, K., Forejt, V., &#38; Kučera, A. (2017). Trading performance for stability in Markov decision processes. <i>Journal of Computer and System Sciences</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcss.2016.09.009\">https://doi.org/10.1016/j.jcss.2016.09.009</a>","ieee":"T. Brázdil, K. Chatterjee, V. Forejt, and A. Kučera, “Trading performance for stability in Markov decision processes,” <i>Journal of Computer and System Sciences</i>, vol. 84. Elsevier, pp. 144–170, 2017.","mla":"Brázdil, Tomáš, et al. “Trading Performance for Stability in Markov Decision Processes.” <i>Journal of Computer and System Sciences</i>, vol. 84, Elsevier, 2017, pp. 144–70, doi:<a href=\"https://doi.org/10.1016/j.jcss.2016.09.009\">10.1016/j.jcss.2016.09.009</a>.","chicago":"Brázdil, Tomáš, Krishnendu Chatterjee, Vojtěch Forejt, and Antonín Kučera. “Trading Performance for Stability in Markov Decision Processes.” <i>Journal of Computer and System Sciences</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.jcss.2016.09.009\">https://doi.org/10.1016/j.jcss.2016.09.009</a>."},"department":[{"_id":"KrCh"}],"pubrep_id":"717","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"2305"}]},"scopus_import":"1","day":"01","isi":1},{"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_published":"2017-01-14T00:00:00Z","date_created":"2021-07-23T09:39:34Z","date_updated":"2022-08-25T13:34:55Z","_id":"9707","abstract":[{"lang":"eng","text":"Branching morphogenesis of the epithelial ureteric bud forms the renal collecting duct system and is critical for normal nephron number, while low nephron number is implicated in hypertension and renal disease. Ureteric bud growth and branching requires GDNF signaling from the surrounding mesenchyme to cells at the ureteric bud tips, via the Ret receptor tyrosine kinase and coreceptor Gfrα1; Ret signaling up-regulates transcription factors Etv4 and Etv5, which are also critical for branching. Despite extensive knowledge of the genetic control of these events, it is not understood, at the cellular level, how renal branching morphogenesis is achieved or how Ret signaling influences epithelial cell behaviors to promote this process. Analysis of chimeric embryos previously suggested a role for Ret signaling in promoting cell rearrangements in the nephric duct, but this method was unsuited to study individual cell behaviors during ureteric bud branching. Here, we use Mosaic Analysis with Double Markers (MADM), combined with organ culture and time-lapse imaging, to trace the movements and divisions of individual ureteric bud tip cells. We first examine wild-type clones and then Ret or Etv4 mutant/wild-type clones in which the mutant and wild-type sister cells are differentially and heritably marked by green and red fluorescent proteins. We find that, in normal kidneys, most individual tip cells behave as self-renewing progenitors, some of whose progeny remain at the tips while others populate the growing UB trunks. In Ret or Etv4 MADM clones, the wild-type cells generated at a UB tip are much more likely to remain at, or move to, the new tips during branching and elongation, while their Ret−/− or Etv4−/− sister cells tend to lag behind and contribute only to the trunks. By tracking successive mitoses in a cell lineage, we find that Ret signaling has little effect on proliferation, in contrast to its effects on cell movement. Our results show that Ret/Etv4 signaling promotes directed cell movements in the ureteric bud tips, and suggest a model in which these cell movements mediate branching morphogenesis."}],"month":"01","article_processing_charge":"No","oa":1,"oa_version":"Published Version","title":"Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis","status":"public","year":"2017","department":[{"_id":"SiHi"}],"doi":"10.5061/dryad.pk16b","citation":{"ista":"Riccio P, Cebrián C, Zong H, Hippenmeyer S, Costantini F. 2017. Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis, Dryad, <a href=\"https://doi.org/10.5061/dryad.pk16b\">10.5061/dryad.pk16b</a>.","ama":"Riccio P, Cebrián C, Zong H, Hippenmeyer S, Costantini F. Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis. 2017. doi:<a href=\"https://doi.org/10.5061/dryad.pk16b\">10.5061/dryad.pk16b</a>","short":"P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, (2017).","chicago":"Riccio, Paul, Christina Cebrián, Hui Zong, Simon Hippenmeyer, and Frank Costantini. “Data from: Ret and Etv4 Promote Directed Movements of Progenitor Cells during Renal Branching Morphogenesis.” Dryad, 2017. <a href=\"https://doi.org/10.5061/dryad.pk16b\">https://doi.org/10.5061/dryad.pk16b</a>.","mla":"Riccio, Paul, et al. <i>Data from: Ret and Etv4 Promote Directed Movements of Progenitor Cells during Renal Branching Morphogenesis</i>. Dryad, 2017, doi:<a href=\"https://doi.org/10.5061/dryad.pk16b\">10.5061/dryad.pk16b</a>.","ieee":"P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, and F. Costantini, “Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis.” Dryad, 2017.","apa":"Riccio, P., Cebrián, C., Zong, H., Hippenmeyer, S., &#38; Costantini, F. (2017). Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis. Dryad. <a href=\"https://doi.org/10.5061/dryad.pk16b\">https://doi.org/10.5061/dryad.pk16b</a>"},"publisher":"Dryad","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.pk16b"}],"author":[{"full_name":"Riccio, Paul","last_name":"Riccio","first_name":"Paul"},{"last_name":"Cebrián","first_name":"Christina","full_name":"Cebrián, Christina"},{"full_name":"Zong, Hui","first_name":"Hui","last_name":"Zong"},{"full_name":"Hippenmeyer, Simon","first_name":"Simon","last_name":"Hippenmeyer","id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061"},{"first_name":"Frank","last_name":"Costantini","full_name":"Costantini, Frank"}],"related_material":{"record":[{"relation":"used_in_publication","status":"deleted","id":"9702"}]},"day":"14","type":"research_data_reference"},{"_id":"9709","article_processing_charge":"No","abstract":[{"text":"Across the nervous system, certain population spiking patterns are observed far more frequently than others. A hypothesis about this structure is that these collective activity patterns function as population codewords–collective modes–carrying information distinct from that of any single cell. We investigate this phenomenon in recordings of ∼150 retinal ganglion cells, the retina’s output. We develop a novel statistical model that decomposes the population response into modes; it predicts the distribution of spiking activity in the ganglion cell population with high accuracy. We found that the modes represent localized features of the visual stimulus that are distinct from the features represented by single neurons. Modes form clusters of activity states that are readily discriminated from one another. When we repeated the same visual stimulus, we found that the same mode was robustly elicited. These results suggest that retinal ganglion cells’ collective signaling is endowed with a form of error-correcting code–a principle that may hold in brain areas beyond retina.","lang":"eng"}],"month":"10","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_published":"2017-10-18T00:00:00Z","date_created":"2021-07-23T11:34:34Z","date_updated":"2023-02-21T16:34:41Z","main_file_link":[{"url":"https://doi.org/10.5061/dryad.1f1rc","open_access":"1"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"1197"}]},"author":[{"full_name":"Prentice, Jason","last_name":"Prentice","first_name":"Jason"},{"first_name":"Olivier","last_name":"Marre","full_name":"Marre, Olivier"},{"first_name":"Mark","last_name":"Ioffe","full_name":"Ioffe, Mark"},{"full_name":"Loback, Adrianna","last_name":"Loback","first_name":"Adrianna"},{"full_name":"Tkačik, Gašper","last_name":"Tkačik","first_name":"Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455"},{"first_name":"Michael","last_name":"Berry","full_name":"Berry, Michael"}],"day":"18","type":"research_data_reference","oa":1,"oa_version":"Published Version","title":"Data from: Error-robust modes of the retinal population code","status":"public","year":"2017","publisher":"Dryad","doi":"10.5061/dryad.1f1rc","citation":{"ista":"Prentice J, Marre O, Ioffe M, Loback A, Tkačik G, Berry M. 2017. Data from: Error-robust modes of the retinal population code, Dryad, <a href=\"https://doi.org/10.5061/dryad.1f1rc\">10.5061/dryad.1f1rc</a>.","ama":"Prentice J, Marre O, Ioffe M, Loback A, Tkačik G, Berry M. Data from: Error-robust modes of the retinal population code. 2017. doi:<a href=\"https://doi.org/10.5061/dryad.1f1rc\">10.5061/dryad.1f1rc</a>","short":"J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).","ieee":"J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, and M. Berry, “Data from: Error-robust modes of the retinal population code.” Dryad, 2017.","apa":"Prentice, J., Marre, O., Ioffe, M., Loback, A., Tkačik, G., &#38; Berry, M. (2017). Data from: Error-robust modes of the retinal population code. Dryad. <a href=\"https://doi.org/10.5061/dryad.1f1rc\">https://doi.org/10.5061/dryad.1f1rc</a>","chicago":"Prentice, Jason, Olivier Marre, Mark Ioffe, Adrianna Loback, Gašper Tkačik, and Michael Berry. “Data from: Error-Robust Modes of the Retinal Population Code.” Dryad, 2017. <a href=\"https://doi.org/10.5061/dryad.1f1rc\">https://doi.org/10.5061/dryad.1f1rc</a>.","mla":"Prentice, Jason, et al. <i>Data from: Error-Robust Modes of the Retinal Population Code</i>. Dryad, 2017, doi:<a href=\"https://doi.org/10.5061/dryad.1f1rc\">10.5061/dryad.1f1rc</a>."},"department":[{"_id":"GaTk"}]},{"oa":1,"oa_version":"Published Version","citation":{"ista":"Etheridge A, Barton NH. 2017. Data for: Establishment in a new habitat by polygenic adaptation, Mendeley Data, <a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">10.17632/nw68fxzjpm.1</a>.","ama":"Etheridge A, Barton NH. Data for: Establishment in a new habitat by polygenic adaptation. 2017. doi:<a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">10.17632/nw68fxzjpm.1</a>","short":"A. Etheridge, N.H. Barton, (2017).","apa":"Etheridge, A., &#38; Barton, N. H. (2017). Data for: Establishment in a new habitat by polygenic adaptation. Mendeley Data. <a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">https://doi.org/10.17632/nw68fxzjpm.1</a>","ieee":"A. Etheridge and N. H. Barton, “Data for: Establishment in a new habitat by polygenic adaptation.” Mendeley Data, 2017.","chicago":"Etheridge, Alison, and Nicholas H Barton. “Data for: Establishment in a New Habitat by Polygenic Adaptation.” Mendeley Data, 2017. <a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">https://doi.org/10.17632/nw68fxzjpm.1</a>.","mla":"Etheridge, Alison, and Nicholas H. Barton. <i>Data for: Establishment in a New Habitat by Polygenic Adaptation</i>. Mendeley Data, 2017, doi:<a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">10.17632/nw68fxzjpm.1</a>."},"department":[{"_id":"NiBa"}],"doi":"10.17632/nw68fxzjpm.1","publisher":"Mendeley Data","status":"public","year":"2017","title":"Data for: Establishment in a new habitat by polygenic adaptation","author":[{"full_name":"Etheridge, Alison","first_name":"Alison","last_name":"Etheridge"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H","full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240"}],"related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"564"}]},"main_file_link":[{"url":"https://doi.org/10.17632/nw68fxzjpm.1","open_access":"1"}],"type":"research_data_reference","day":"29","date_published":"2017-12-29T00:00:00Z","date_created":"2021-08-09T13:18:55Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2025-05-28T11:56:59Z","month":"12","abstract":[{"lang":"eng","text":"Mathematica notebooks used to generate figures."}],"article_processing_charge":"No","_id":"9842"},{"type":"research_data_reference","day":"18","author":[{"orcid":"0000-0001-9068-6090","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","last_name":"Nikolic","first_name":"Nela","full_name":"Nikolic, Nela"},{"full_name":"Schreiber, Frank","first_name":"Frank","last_name":"Schreiber"},{"full_name":"Dal Co, Alma","last_name":"Dal Co","first_name":"Alma"},{"first_name":"Daniel","last_name":"Kiviet","full_name":"Kiviet, Daniel"},{"full_name":"Bergmiller, Tobias","last_name":"Bergmiller","first_name":"Tobias","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5396-4346"},{"last_name":"Littmann","first_name":"Sten","full_name":"Littmann, Sten"},{"last_name":"Kuypers","first_name":"Marcel","full_name":"Kuypers, Marcel"},{"first_name":"Martin","last_name":"Ackermann","full_name":"Ackermann, Martin"}],"related_material":{"record":[{"id":"541","status":"public","relation":"used_in_publication"}]},"publisher":"Public Library of Science","doi":"10.1371/journal.pgen.1007122.s018","department":[{"_id":"CaGu"}],"citation":{"ista":"Nikolic N, Schreiber F, Dal Co A, Kiviet D, Bergmiller T, Littmann S, Kuypers M, Ackermann M. 2017. Source data for figures and tables, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">10.1371/journal.pgen.1007122.s018</a>.","ama":"Nikolic N, Schreiber F, Dal Co A, et al. Source data for figures and tables. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">10.1371/journal.pgen.1007122.s018</a>","short":"N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).","chicago":"Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller, Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Source Data for Figures and Tables.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">https://doi.org/10.1371/journal.pgen.1007122.s018</a>.","mla":"Nikolic, Nela, et al. <i>Source Data for Figures and Tables</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">10.1371/journal.pgen.1007122.s018</a>.","ieee":"N. Nikolic <i>et al.</i>, “Source data for figures and tables.” Public Library of Science, 2017.","apa":"Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Source data for figures and tables. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">https://doi.org/10.1371/journal.pgen.1007122.s018</a>"},"status":"public","title":"Source data for figures and tables","year":"2017","oa_version":"Published Version","article_processing_charge":"No","month":"12","_id":"9844","date_updated":"2023-02-23T12:25:04Z","date_published":"2017-12-18T00:00:00Z","date_created":"2021-08-09T13:27:16Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf"},{"_id":"9845","article_processing_charge":"No","month":"12","abstract":[{"text":"Estimates of 13 C-arabinose and 2 H-glucose uptake from the fractions of heavy isotopes measured\tin single cells","lang":"eng"}],"date_updated":"2023-02-23T12:25:04Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_published":"2017-12-18T00:00:00Z","date_created":"2021-08-09T13:31:51Z","day":"18","type":"research_data_reference","author":[{"orcid":"0000-0001-9068-6090","full_name":"Nikolic, Nela","first_name":"Nela","last_name":"Nikolic","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Schreiber","first_name":"Frank","full_name":"Schreiber, Frank"},{"last_name":"Dal Co","first_name":"Alma","full_name":"Dal Co, Alma"},{"first_name":"Daniel","last_name":"Kiviet","full_name":"Kiviet, Daniel"},{"id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","full_name":"Bergmiller, Tobias","first_name":"Tobias","last_name":"Bergmiller","orcid":"0000-0001-5396-4346"},{"full_name":"Littmann, Sten","first_name":"Sten","last_name":"Littmann"},{"last_name":"Kuypers","first_name":"Marcel","full_name":"Kuypers, Marcel"},{"full_name":"Ackermann, Martin","first_name":"Martin","last_name":"Ackermann"}],"related_material":{"record":[{"id":"541","status":"public","relation":"used_in_publication"}]},"status":"public","year":"2017","title":"Mathematical model","publisher":"Public Library of Science","department":[{"_id":"CaGu"}],"citation":{"apa":"Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Mathematical model. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">https://doi.org/10.1371/journal.pgen.1007122.s017</a>","ieee":"N. Nikolic <i>et al.</i>, “Mathematical model.” Public Library of Science, 2017.","chicago":"Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller, Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Mathematical Model.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">https://doi.org/10.1371/journal.pgen.1007122.s017</a>.","mla":"Nikolic, Nela, et al. <i>Mathematical Model</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">10.1371/journal.pgen.1007122.s017</a>.","ista":"Nikolic N, Schreiber F, Dal Co A, Kiviet D, Bergmiller T, Littmann S, Kuypers M, Ackermann M. 2017. Mathematical model, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">10.1371/journal.pgen.1007122.s017</a>.","ama":"Nikolic N, Schreiber F, Dal Co A, et al. Mathematical model. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">10.1371/journal.pgen.1007122.s017</a>","short":"N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. 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Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">10.1371/journal.pbio.2001894.s016</a>.","ama":"Schmidt T, Barton NH, Rasic G, et al. Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">10.1371/journal.pbio.2001894.s016</a>","short":"T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).","apa":"Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">https://doi.org/10.1371/journal.pbio.2001894.s016</a>","ieee":"T. Schmidt <i>et al.</i>, “Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics.” Public Library of Science, 2017.","chicago":"Schmidt, Tom, Nicholas H Barton, Gordana Rasic, Andrew Turley, Brian Montgomery, Inaki Iturbe Ormaetxe, Peter Cook, et al. “Excel File with Data on Mosquito Densities, Wolbachia Infection Status and Housing Characteristics.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">https://doi.org/10.1371/journal.pbio.2001894.s016</a>.","mla":"Schmidt, Tom, et al. <i>Excel File with Data on Mosquito Densities, Wolbachia Infection Status and Housing Characteristics</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">10.1371/journal.pbio.2001894.s016</a>."},"publisher":"Public Library of Science"},{"article_processing_charge":"No","month":"04","abstract":[{"text":"Lists of all differentially expressed genes in the different priming-challenge treatments (compared to the fully naïve control; xlsx file). Relevant columns include the following: sample_1 and sample_2 – treatment groups being compared; Normalised FPKM sample_1 and sample_2 – FPKM of samples being compared; log2(fold_change) – log2(FPKM sample 2/FPKM sample 1), i.e. negative means sample 1 upregulated compared with sample 2, positive means sample 2 upregulated compared with sample 1; cuffdiff test_statistic – test statistic of differential expression test; p_value – p-value of differential expression test; q_value (FDR correction) – adjusted P-value of differential expression test. (XLSX 598 kb)","lang":"eng"}],"_id":"9859","date_published":"2017-04-26T00:00:00Z","date_created":"2021-08-10T07:59:02Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2023-09-22T09:47:44Z","related_material":{"record":[{"id":"1006","status":"public","relation":"used_in_publication"}]},"author":[{"full_name":"Greenwood, Jenny","last_name":"Greenwood","first_name":"Jenny"},{"orcid":"0000-0002-8214-4758","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87","last_name":"Milutinovic","first_name":"Barbara","full_name":"Milutinovic, Barbara"},{"full_name":"Peuß, Robert","last_name":"Peuß","first_name":"Robert"},{"full_name":"Behrens, Sarah","first_name":"Sarah","last_name":"Behrens"},{"full_name":"Essar, Daniela","first_name":"Daniela","last_name":"Essar"},{"full_name":"Rosenstiel, Philip","first_name":"Philip","last_name":"Rosenstiel"},{"full_name":"Schulenburg, Hinrich","last_name":"Schulenburg","first_name":"Hinrich"},{"last_name":"Kurtz","first_name":"Joachim","full_name":"Kurtz, Joachim"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1"}],"type":"research_data_reference","day":"26","oa_version":"Published Version","oa":1,"publisher":"Springer Nature","doi":"10.6084/m9.figshare.c.3756974_d1.v1","department":[{"_id":"SyCr"}],"citation":{"ama":"Greenwood J, Milutinovic B, Peuß R, et al. Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. 2017. doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">10.6084/m9.figshare.c.3756974_d1.v1</a>","ista":"Greenwood J, Milutinovic B, Peuß R, Behrens S, Essar D, Rosenstiel P, Schulenburg H, Kurtz J. 2017. Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">10.6084/m9.figshare.c.3756974_d1.v1</a>.","short":"J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).","chicago":"Greenwood, Jenny, Barbara Milutinovic, Robert Peuß, Sarah Behrens, Daniela Essar, Philip Rosenstiel, Hinrich Schulenburg, and Joachim Kurtz. “Additional File 1: Table S1. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae.” Springer Nature, 2017. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1</a>.","mla":"Greenwood, Jenny, et al. <i>Additional File 1: Table S1. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae</i>. Springer Nature, 2017, doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">10.6084/m9.figshare.c.3756974_d1.v1</a>.","ieee":"J. Greenwood <i>et al.</i>, “Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae.” Springer Nature, 2017.","apa":"Greenwood, J., Milutinovic, B., Peuß, R., Behrens, S., Essar, D., Rosenstiel, P., … Kurtz, J. (2017). Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1</a>"},"year":"2017","title":"Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae","status":"public"},{"_id":"9860","month":"04","article_processing_charge":"No","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_created":"2021-08-10T08:07:12Z","date_published":"2017-04-26T00:00:00Z","date_updated":"2023-09-22T09:47:44Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1"}],"related_material":{"record":[{"id":"1006","relation":"used_in_publication","status":"public"}]},"author":[{"full_name":"Greenwood, Jenny","first_name":"Jenny","last_name":"Greenwood"},{"orcid":"0000-0002-8214-4758","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara","last_name":"Milutinovic","full_name":"Milutinovic, Barbara"},{"first_name":"Robert","last_name":"Peuß","full_name":"Peuß, Robert"},{"first_name":"Sarah","last_name":"Behrens","full_name":"Behrens, Sarah"},{"full_name":"Essar, Daniela","first_name":"Daniela","last_name":"Essar"},{"full_name":"Rosenstiel, Philip","first_name":"Philip","last_name":"Rosenstiel"},{"last_name":"Schulenburg","first_name":"Hinrich","full_name":"Schulenburg, Hinrich"},{"last_name":"Kurtz","first_name":"Joachim","full_name":"Kurtz, Joachim"}],"day":"26","type":"research_data_reference","oa_version":"Published Version","oa":1,"status":"public","title":"Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae","year":"2017","department":[{"_id":"SyCr"}],"citation":{"apa":"Greenwood, J., Milutinovic, B., Peuß, R., Behrens, S., Essar, D., Rosenstiel, P., … Kurtz, J. (2017). Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1</a>","ieee":"J. Greenwood <i>et al.</i>, “Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae.” Springer Nature, 2017.","chicago":"Greenwood, Jenny, Barbara Milutinovic, Robert Peuß, Sarah Behrens, Daniela Essar, Philip Rosenstiel, Hinrich Schulenburg, and Joachim Kurtz. “Additional File 5: Table S3. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae.” Springer Nature, 2017. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1</a>.","mla":"Greenwood, Jenny, et al. <i>Additional File 5: Table S3. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae</i>. Springer Nature, 2017, doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">10.6084/m9.figshare.c.3756974_d5.v1</a>.","ista":"Greenwood J, Milutinovic B, Peuß R, Behrens S, Essar D, Rosenstiel P, Schulenburg H, Kurtz J. 2017. Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">10.6084/m9.figshare.c.3756974_d5.v1</a>.","ama":"Greenwood J, Milutinovic B, Peuß R, et al. Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. 2017. doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">10.6084/m9.figshare.c.3756974_d5.v1</a>","short":"J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017)."},"doi":"10.6084/m9.figshare.c.3756974_d5.v1","publisher":"Springer Nature"},{"article_processing_charge":"No","abstract":[{"text":"As a consequence of its difference in copy number between males and females, the X chromosome is subject to unique evolutionary forces and gene regulatory mechanisms. Previous studies of Drosophila melanogaster have shown that the expression of X-linked, testis-specific reporter genes is suppressed in the male germline. However, it is not known whether this phenomenon is restricted to testis-expressed genes or if it is a more general property of genes with tissue-specific expression, which are also underrepresented on the X chromosome. To test this, we compared the expression of three tissue-specific reporter genes (ovary, accessory gland and Malpighian tubule) inserted at various autosomal and X-chromosomal locations. In contrast to testis-specific reporter genes, we found no reduction of X-linked expression in any of the other tissues. In accessory gland and Malpighian tubule, we detected higher expression of the X-linked reporter genes, which suggests that they are at least partially dosage compensated. We found no difference in the tissue-specificity of X-linked and autosomal reporter genes. These findings indicate that, in general, the X chromosome is not a detrimental environment for tissue-specific gene expression and that the suppression of X-linked expression is limited to the male germline.","lang":"eng"}],"month":"02","_id":"9861","date_published":"2017-02-14T00:00:00Z","date_created":"2021-08-10T08:12:52Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2023-09-22T09:41:20Z","related_material":{"record":[{"id":"1019","status":"public","relation":"used_in_publication"}]},"author":[{"full_name":"Argyridou, Eliza","first_name":"Eliza","last_name":"Argyridou"},{"orcid":"0000-0001-8871-4961","id":"4C0A3874-F248-11E8-B48F-1D18A9856A87","first_name":"Ann K","last_name":"Huylmans","full_name":"Huylmans, Ann K"},{"full_name":"Königer, Annabella","first_name":"Annabella","last_name":"Königer"},{"full_name":"Parsch, John","first_name":"John","last_name":"Parsch"}],"main_file_link":[{"url":"https://doi.org/10.5061/dryad.02f6r","open_access":"1"}],"type":"research_data_reference","day":"14","oa":1,"oa_version":"Published Version","publisher":"Dryad","department":[{"_id":"BeVi"}],"doi":"10.5061/dryad.02f6r","citation":{"mla":"Argyridou, Eliza, et al. <i>Data from: X-Linkage Is Not a General Inhibitor of Tissue-Specific Gene Expression in Drosophila Melanogaster</i>. Dryad, 2017, doi:<a href=\"https://doi.org/10.5061/dryad.02f6r\">10.5061/dryad.02f6r</a>.","chicago":"Argyridou, Eliza, Ann K Huylmans, Annabella Königer, and John Parsch. “Data from: X-Linkage Is Not a General Inhibitor of Tissue-Specific Gene Expression in Drosophila Melanogaster.” Dryad, 2017. <a href=\"https://doi.org/10.5061/dryad.02f6r\">https://doi.org/10.5061/dryad.02f6r</a>.","ieee":"E. Argyridou, A. K. Huylmans, A. Königer, and J. Parsch, “Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster.” Dryad, 2017.","apa":"Argyridou, E., Huylmans, A. K., Königer, A., &#38; Parsch, J. (2017). Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster. Dryad. <a href=\"https://doi.org/10.5061/dryad.02f6r\">https://doi.org/10.5061/dryad.02f6r</a>","short":"E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, (2017).","ama":"Argyridou E, Huylmans AK, Königer A, Parsch J. Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster. 2017. doi:<a href=\"https://doi.org/10.5061/dryad.02f6r\">10.5061/dryad.02f6r</a>","ista":"Argyridou E, Huylmans AK, Königer A, Parsch J. 2017. Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster, Dryad, <a href=\"https://doi.org/10.5061/dryad.02f6r\">10.5061/dryad.02f6r</a>."},"status":"public","year":"2017","title":"Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster"}]