[{"doi":"10.1109/wcncw.2017.7919107","language":[{"iso":"eng"}],"publication_status":"published","year":"2017","publication_identifier":{"isbn":["9781509059089"]},"publication":"2017 IEEE Wireless Communications and Networking Conference Workshops ","_id":"6731","title":"Capacity-achieving rate-compatible polar codes for general channels","arxiv":1,"citation":{"apa":"Mondelli, M., Hassani, H., Maric, I., Hui, D., &#38; Hong, S.-N. (2017). Capacity-achieving rate-compatible polar codes for general channels. In <i>2017 IEEE Wireless Communications and Networking Conference Workshops </i>. San Francisco, CA, USA: IEEE. <a href=\"https://doi.org/10.1109/wcncw.2017.7919107\">https://doi.org/10.1109/wcncw.2017.7919107</a>","mla":"Mondelli, Marco, et al. “Capacity-Achieving Rate-Compatible Polar Codes for General Channels.” <i>2017 IEEE Wireless Communications and Networking Conference Workshops </i>, 7919107, IEEE, 2017, doi:<a href=\"https://doi.org/10.1109/wcncw.2017.7919107\">10.1109/wcncw.2017.7919107</a>.","ista":"Mondelli M, Hassani H, Maric I, Hui D, Hong S-N. 2017. Capacity-achieving rate-compatible polar codes for general channels. 2017 IEEE Wireless Communications and Networking Conference Workshops . WCNCW: Wireless communications and networking conference workshops, 7919107.","short":"M. Mondelli, H. Hassani, I. Maric, D. Hui, S.-N. Hong, in:, 2017 IEEE Wireless Communications and Networking Conference Workshops , IEEE, 2017.","ieee":"M. Mondelli, H. Hassani, I. Maric, D. Hui, and S.-N. Hong, “Capacity-achieving rate-compatible polar codes for general channels,” in <i>2017 IEEE Wireless Communications and Networking Conference Workshops </i>, San Francisco, CA, USA, 2017.","ama":"Mondelli M, Hassani H, Maric I, Hui D, Hong S-N. Capacity-achieving rate-compatible polar codes for general channels. In: <i>2017 IEEE Wireless Communications and Networking Conference Workshops </i>. IEEE; 2017. doi:<a href=\"https://doi.org/10.1109/wcncw.2017.7919107\">10.1109/wcncw.2017.7919107</a>","chicago":"Mondelli, Marco, Hamed Hassani, Ivana Maric, Dennis Hui, and Song-Nam Hong. “Capacity-Achieving Rate-Compatible Polar Codes for General Channels.” In <i>2017 IEEE Wireless Communications and Networking Conference Workshops </i>. IEEE, 2017. <a href=\"https://doi.org/10.1109/wcncw.2017.7919107\">https://doi.org/10.1109/wcncw.2017.7919107</a>."},"article_number":"7919107","oa":1,"conference":{"name":"WCNCW: Wireless communications and networking conference workshops","start_date":"2017-03-19","end_date":"2017-03-22","location":"San Francisco, CA, USA"},"main_file_link":[{"url":"https://arxiv.org/abs/1611.01199","open_access":"1"}],"month":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","abstract":[{"text":"We present a rate-compatible polar coding scheme that achieves the capacity of any family of channels. Our solution generalizes the previous results [1], [2] that provide capacity-achieving rate-compatible polar codes for a degraded family of channels. The motivation for our extension comes from the fact that in many practical scenarios, e.g., MIMO systems and non-Gaussian interference, the channels cannot be ordered by degradation. The main technical contribution of this paper consists in removing the degradation condition. To do so, we exploit the ideas coming from the construction of universal polar codes. Our scheme possesses the usual attractive features of polar codes: low complexity code construction, encoding, and decoding; super-polynomial scaling of the error probability with the block length; and absence of error floors. On the negative side, the scaling of the gap to capacity with the block length is slower than in standard polar codes, and we prove an upper bound on the scaling exponent.","lang":"eng"}],"status":"public","type":"conference","extern":"1","day":"04","date_updated":"2021-01-12T08:08:43Z","date_created":"2019-07-31T05:56:58Z","date_published":"2017-05-04T00:00:00Z","external_id":{"arxiv":["1611.01199"]},"author":[{"full_name":"Mondelli, Marco","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","last_name":"Mondelli"},{"last_name":"Hassani","first_name":"Hamed","full_name":"Hassani, Hamed"},{"full_name":"Maric, Ivana","first_name":"Ivana","last_name":"Maric"},{"last_name":"Hui","full_name":"Hui, Dennis","first_name":"Dennis"},{"full_name":"Hong, Song-Nam","first_name":"Song-Nam","last_name":"Hong"}],"quality_controlled":"1","publisher":"IEEE"},{"month":"05","department":[{"_id":"MiSi"},{"_id":"Bio"},{"_id":"NanoFab"}],"page":"1314 - 1325","volume":27,"project":[{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425"},{"grant_number":"Y 564-B12","_id":"25A8E5EA-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Cytoskeletal force generation and transduction of leukocytes (FWF)"}],"publication_identifier":{"issn":["09609822"]},"year":"2017","language":[{"iso":"eng"}],"date_created":"2018-12-11T11:47:51Z","quality_controlled":"1","publisher":"Cell Press","abstract":[{"lang":"eng","text":"Navigation of cells along gradients of guidance cues is a determining step in many developmental and immunological processes. Gradients can either be soluble or immobilized to tissues as demonstrated for the haptotactic migration of dendritic cells (DCs) toward higher concentrations of immobilized chemokine CCL21. To elucidate how gradient characteristics govern cellular response patterns, we here introduce an in vitro system allowing to track migratory responses of DCs to precisely controlled immobilized gradients of CCL21. We find that haptotactic sensing depends on the absolute CCL21 concentration and local steepness of the gradient, consistent with a scenario where DC directionality is governed by the signal-to-noise ratio of CCL21 binding to the receptor CCR7. We find that the conditions for optimal DC guidance are perfectly provided by the CCL21 gradients we measure in vivo. Furthermore, we find that CCR7 signal termination by the G-protein-coupled receptor kinase 6 (GRK6) is crucial for haptotactic but dispensable for chemotactic CCL21 gradient sensing in vitro and confirm those observations in vivo. These findings suggest that stable, tissue-bound CCL21 gradients as sustainable “roads” ensure optimal guidance in vivo."}],"day":"09","status":"public","type":"journal_article","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","publication":"Current Biology","title":"Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6","_id":"674","publication_status":"published","doi":"10.1016/j.cub.2017.04.004","citation":{"ieee":"J. Schwarz <i>et al.</i>, “Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6,” <i>Current Biology</i>, vol. 27, no. 9. Cell Press, pp. 1314–1325, 2017.","ama":"Schwarz J, Bierbaum V, Vaahtomeri K, et al. Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6. <i>Current Biology</i>. 2017;27(9):1314-1325. doi:<a href=\"https://doi.org/10.1016/j.cub.2017.04.004\">10.1016/j.cub.2017.04.004</a>","chicago":"Schwarz, Jan, Veronika Bierbaum, Kari Vaahtomeri, Robert Hauschild, Markus Brown, Ingrid de Vries, Alexander F Leithner, et al. “Dendritic Cells Interpret Haptotactic Chemokine Gradients in a Manner Governed by Signal to Noise Ratio and Dependent on GRK6.” <i>Current Biology</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.cub.2017.04.004\">https://doi.org/10.1016/j.cub.2017.04.004</a>.","ista":"Schwarz J, Bierbaum V, Vaahtomeri K, Hauschild R, Brown M, de Vries I, Leithner AF, Reversat A, Merrin J, Tarrant T, Bollenbach MT, Sixt MK. 2017. Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6. Current Biology. 27(9), 1314–1325.","short":"J. Schwarz, V. Bierbaum, K. Vaahtomeri, R. Hauschild, M. Brown, I. de Vries, A.F. Leithner, A. Reversat, J. Merrin, T. Tarrant, M.T. Bollenbach, M.K. Sixt, Current Biology 27 (2017) 1314–1325.","mla":"Schwarz, Jan, et al. “Dendritic Cells Interpret Haptotactic Chemokine Gradients in a Manner Governed by Signal to Noise Ratio and Dependent on GRK6.” <i>Current Biology</i>, vol. 27, no. 9, Cell Press, 2017, pp. 1314–25, doi:<a href=\"https://doi.org/10.1016/j.cub.2017.04.004\">10.1016/j.cub.2017.04.004</a>.","apa":"Schwarz, J., Bierbaum, V., Vaahtomeri, K., Hauschild, R., Brown, M., de Vries, I., … Sixt, M. K. (2017). Dendritic cells interpret haptotactic chemokine gradients in a manner governed by signal to noise ratio and dependent on GRK6. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2017.04.004\">https://doi.org/10.1016/j.cub.2017.04.004</a>"},"intvolume":"        27","ec_funded":1,"date_updated":"2023-02-23T12:50:44Z","issue":"9","author":[{"id":"346C1EC6-F248-11E8-B48F-1D18A9856A87","full_name":"Schwarz, Jan","first_name":"Jan","last_name":"Schwarz"},{"first_name":"Veronika","full_name":"Bierbaum, Veronika","id":"3FD04378-F248-11E8-B48F-1D18A9856A87","last_name":"Bierbaum"},{"id":"368EE576-F248-11E8-B48F-1D18A9856A87","full_name":"Vaahtomeri, Kari","first_name":"Kari","last_name":"Vaahtomeri","orcid":"0000-0001-7829-3518"},{"orcid":"0000-0001-9843-3522","last_name":"Hauschild","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","full_name":"Hauschild, Robert","first_name":"Robert"},{"last_name":"Brown","first_name":"Markus","full_name":"Brown, Markus","id":"3DAB9AFC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"De Vries","id":"4C7D837E-F248-11E8-B48F-1D18A9856A87","first_name":"Ingrid","full_name":"De Vries, Ingrid"},{"full_name":"Leithner, Alexander F","first_name":"Alexander F","id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","last_name":"Leithner"},{"last_name":"Reversat","orcid":"0000-0003-0666-8928","full_name":"Reversat, Anne","id":"35B76592-F248-11E8-B48F-1D18A9856A87","first_name":"Anne"},{"orcid":"0000-0001-5145-4609","last_name":"Merrin","full_name":"Merrin, Jack","id":"4515C308-F248-11E8-B48F-1D18A9856A87","first_name":"Jack"},{"full_name":"Tarrant, Teresa","first_name":"Teresa","last_name":"Tarrant"},{"id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","full_name":"Bollenbach, Tobias","first_name":"Tobias","last_name":"Bollenbach","orcid":"0000-0003-4398-476X"},{"orcid":"0000-0002-6620-9179","last_name":"Sixt","full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K"}],"date_published":"2017-05-09T00:00:00Z","publist_id":"7050","oa_version":"None","scopus_import":1},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Haase, Johannes, Salvatore Bagiante, Hans Sigg, and Jeroen Van Bokhoven. “Surface Enhanced Infrared Absorption of Chemisorbed Carbon Monoxide Using Plasmonic Nanoantennas.” <i>Optics Letters</i>. Optica Publishing Group, 2017. <a href=\"https://doi.org/10.1364/OL.42.001931\">https://doi.org/10.1364/OL.42.001931</a>.","ama":"Haase J, Bagiante S, Sigg H, Van Bokhoven J. Surface enhanced infrared absorption of chemisorbed carbon monoxide using plasmonic nanoantennas. <i>Optics Letters</i>. 2017;42(10):1931-1934. doi:<a href=\"https://doi.org/10.1364/OL.42.001931\">10.1364/OL.42.001931</a>","ieee":"J. Haase, S. Bagiante, H. Sigg, and J. Van Bokhoven, “Surface enhanced infrared absorption of chemisorbed carbon monoxide using plasmonic nanoantennas,” <i>Optics Letters</i>, vol. 42, no. 10. Optica Publishing Group, pp. 1931–1934, 2017.","apa":"Haase, J., Bagiante, S., Sigg, H., &#38; Van Bokhoven, J. (2017). Surface enhanced infrared absorption of chemisorbed carbon monoxide using plasmonic nanoantennas. <i>Optics Letters</i>. Optica Publishing Group. <a href=\"https://doi.org/10.1364/OL.42.001931\">https://doi.org/10.1364/OL.42.001931</a>","mla":"Haase, Johannes, et al. “Surface Enhanced Infrared Absorption of Chemisorbed Carbon Monoxide Using Plasmonic Nanoantennas.” <i>Optics Letters</i>, vol. 42, no. 10, Optica Publishing Group, 2017, pp. 1931–34, doi:<a href=\"https://doi.org/10.1364/OL.42.001931\">10.1364/OL.42.001931</a>.","ista":"Haase J, Bagiante S, Sigg H, Van Bokhoven J. 2017. Surface enhanced infrared absorption of chemisorbed carbon monoxide using plasmonic nanoantennas. Optics Letters. 42(10), 1931–1934.","short":"J. Haase, S. Bagiante, H. Sigg, J. Van Bokhoven, Optics Letters 42 (2017) 1931–1934."},"doi":"10.1364/OL.42.001931","publication_status":"published","publication":"Optics Letters","article_processing_charge":"No","title":"Surface enhanced infrared absorption of chemisorbed carbon monoxide using plasmonic nanoantennas","_id":"675","date_published":"2017-05-15T00:00:00Z","author":[{"last_name":"Haase","full_name":"Haase, Johannes","first_name":"Johannes"},{"orcid":"0000-0002-0122-9603","last_name":"Bagiante","first_name":"Salvatore","id":"38ED402E-F248-11E8-B48F-1D18A9856A87","full_name":"Bagiante, Salvatore"},{"last_name":"Sigg","first_name":"Hans","full_name":"Sigg, Hans"},{"first_name":"Jeroen","full_name":"Van Bokhoven, Jeroen","last_name":"Van Bokhoven"}],"issue":"10","date_updated":"2023-10-17T12:16:02Z","intvolume":"        42","scopus_import":"1","oa_version":"None","publist_id":"7048","page":"1931 - 1934","department":[{"_id":"NanoFab"}],"article_type":"original","month":"05","language":[{"iso":"eng"}],"year":"2017","volume":42,"publisher":"Optica Publishing Group","quality_controlled":"1","date_created":"2018-12-11T11:47:51Z","type":"journal_article","status":"public","day":"15","ddc":["530"],"abstract":[{"lang":"eng","text":"We report the enhancement of infrared absorption of chemisorbed carbon monoxide on platinum in the gap of plasmonic nanoantennas. Our method is based on the self-assembled formation of platinum nanoislands on nanoscopic dipole antenna arrays manufactured via electron beam lithography. We employ systematic variations of the plasmonic antenna resonance to precisely couple to the molecular stretch vibration of carbon monoxide adsorbed on the platinum nanoislands. Ultimately, we reach more than 1500-fold infrared absorption enhancements, allowing for an ultrasensitive detection of a monolayer of chemisorbed carbon monoxide. The developed procedure can be adapted to other metal adsorbents and molecular species and could be utilized for coverage sensing in surface catalytic reactions. "}]},{"has_accepted_license":"1","ddc":["570"],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"The segregation of different cell types into distinct tissues is a fundamental process in metazoan development. Differences in cell adhesion and cortex tension are commonly thought to drive cell sorting by regulating tissue surface tension (TST). However, the role that differential TST plays in cell segregation within the developing embryo is as yet unclear. Here, we have analyzed the role of differential TST for germ layer progenitor cell segregation during zebrafish gastrulation. Contrary to previous observations that differential TST drives germ layer progenitor cell segregation in vitro, we show that germ layers display indistinguishable TST within the gastrulating embryo, arguing against differential TST driving germ layer progenitor cell segregation in vivo. We further show that the osmolarity of the interstitial fluid (IF) is an important factor that influences germ layer TST in vivo, and that lower osmolarity of the IF compared with standard cell culture medium can explain why germ layers display differential TST in culture but not in vivo. Finally, we show that directed migration of mesendoderm progenitors is required for germ layer progenitor cell segregation and germ layer formation."}],"type":"journal_article","status":"public","related_material":{"record":[{"relation":"dissertation_contains","id":"961","status":"public"},{"relation":"dissertation_contains","id":"50","status":"public"}]},"day":"15","file_date_updated":"2020-07-14T12:47:39Z","date_created":"2018-12-11T11:47:52Z","external_id":{"pmid":["28512197"]},"publisher":"Company of Biologists","quality_controlled":"1","language":[{"iso":"eng"}],"year":"2017","publication_identifier":{"issn":["09501991"]},"volume":144,"article_type":"original","month":"05","department":[{"_id":"Bio"},{"_id":"CaHe"}],"page":"1798 - 1806","pmid":1,"oa_version":"Published Version","publist_id":"7047","scopus_import":1,"issue":"10","date_updated":"2024-03-25T23:30:13Z","intvolume":"       144","date_published":"2017-05-15T00:00:00Z","author":[{"orcid":"0000-0003-4761-5996","last_name":"Krens","id":"2B819732-F248-11E8-B48F-1D18A9856A87","first_name":"Gabriel","full_name":"Krens, Gabriel"},{"last_name":"Veldhuis","first_name":"Jim","full_name":"Veldhuis, Jim"},{"id":"419EECCC-F248-11E8-B48F-1D18A9856A87","first_name":"Vanessa","full_name":"Barone, Vanessa","last_name":"Barone","orcid":"0000-0003-2676-3367"},{"orcid":"0000-0001-5199-9940","last_name":"Capek","first_name":"Daniel","id":"31C42484-F248-11E8-B48F-1D18A9856A87","full_name":"Capek, Daniel"},{"id":"48F1E0D8-F248-11E8-B48F-1D18A9856A87","full_name":"Maître, Jean-Léon","first_name":"Jean-Léon","last_name":"Maître","orcid":"0000-0002-3688-1474"},{"last_name":"Brodland","full_name":"Brodland, Wayne","first_name":"Wayne"},{"orcid":"0000-0002-0912-4566","last_name":"Heisenberg","full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J"}],"doi":"10.1242/dev.144964","file":[{"access_level":"open_access","file_name":"2017_Development_Krens.pdf","file_id":"6905","content_type":"application/pdf","file_size":8194516,"creator":"dernst","checksum":"bc25125fb664706cdf180e061429f91d","date_created":"2019-09-24T06:56:22Z","relation":"main_file","date_updated":"2020-07-14T12:47:39Z"}],"publication_status":"published","publication":"Development","_id":"676","article_processing_charge":"No","title":"Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation","citation":{"ama":"Krens G, Veldhuis J, Barone V, et al. Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation. <i>Development</i>. 2017;144(10):1798-1806. doi:<a href=\"https://doi.org/10.1242/dev.144964\">10.1242/dev.144964</a>","ieee":"G. Krens <i>et al.</i>, “Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation,” <i>Development</i>, vol. 144, no. 10. Company of Biologists, pp. 1798–1806, 2017.","chicago":"Krens, Gabriel, Jim Veldhuis, Vanessa Barone, Daniel Capek, Jean-Léon Maître, Wayne Brodland, and Carl-Philipp J Heisenberg. “Interstitial Fluid Osmolarity Modulates the Action of Differential Tissue Surface Tension in Progenitor Cell Segregation during Gastrulation.” <i>Development</i>. Company of Biologists, 2017. <a href=\"https://doi.org/10.1242/dev.144964\">https://doi.org/10.1242/dev.144964</a>.","mla":"Krens, Gabriel, et al. “Interstitial Fluid Osmolarity Modulates the Action of Differential Tissue Surface Tension in Progenitor Cell Segregation during Gastrulation.” <i>Development</i>, vol. 144, no. 10, Company of Biologists, 2017, pp. 1798–806, doi:<a href=\"https://doi.org/10.1242/dev.144964\">10.1242/dev.144964</a>.","apa":"Krens, G., Veldhuis, J., Barone, V., Capek, D., Maître, J.-L., Brodland, W., &#38; Heisenberg, C.-P. J. (2017). Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.144964\">https://doi.org/10.1242/dev.144964</a>","ista":"Krens G, Veldhuis J, Barone V, Capek D, Maître J-L, Brodland W, Heisenberg C-PJ. 2017. Interstitial fluid osmolarity modulates the action of differential tissue surface tension in progenitor cell segregation during gastrulation. Development. 144(10), 1798–1806.","short":"G. Krens, J. Veldhuis, V. Barone, D. Capek, J.-L. Maître, W. Brodland, C.-P.J. Heisenberg, Development 144 (2017) 1798–1806."},"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"quality_controlled":"1","publisher":"Cell Press","date_created":"2018-12-11T11:47:52Z","status":"public","type":"journal_article","day":"16","file_date_updated":"2020-07-14T12:47:40Z","has_accepted_license":"1","ddc":["570"],"tmp":{"image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"abstract":[{"text":"The INO80 complex (INO80-C) is an evolutionarily conserved nucleosome remodeler that acts in transcription, replication, and genome stability. It is required for resistance against genotoxic agents and is involved in the repair of DNA double-strand breaks (DSBs) by homologous recombination (HR). However, the causes of the HR defect in INO80-C mutant cells are controversial. Here, we unite previous findings using a system to study HR with high spatial resolution in budding yeast. We find that INO80-C has at least two distinct functions during HR—DNA end resection and presynaptic filament formation. Importantly, the second function is linked to the histone variant H2A.Z. In the absence of H2A.Z, presynaptic filament formation and HR are restored in INO80-C-deficient mutants, suggesting that presynaptic filament formation is the crucial INO80-C function during HR.","lang":"eng"}],"department":[{"_id":"MiSi"}],"page":"1294 - 1303","month":"05","language":[{"iso":"eng"}],"year":"2017","publication_identifier":{"issn":["22111247"]},"volume":19,"date_published":"2017-05-16T00:00:00Z","author":[{"first_name":"Claudio","full_name":"Lademann, Claudio","last_name":"Lademann"},{"last_name":"Renkawitz","orcid":"0000-0003-2856-3369","first_name":"Jörg","full_name":"Renkawitz, Jörg","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Boris","full_name":"Pfander, Boris","last_name":"Pfander"},{"first_name":"Stefan","full_name":"Jentsch, Stefan","last_name":"Jentsch"}],"issue":"7","date_updated":"2021-01-12T08:08:57Z","intvolume":"        19","scopus_import":1,"oa_version":"Published Version","publist_id":"7046","pubrep_id":"899","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"C. Lademann, J. Renkawitz, B. Pfander, S. Jentsch, Cell Reports 19 (2017) 1294–1303.","ista":"Lademann C, Renkawitz J, Pfander B, Jentsch S. 2017. The INO80 complex removes H2A.Z to promote presynaptic filament formation during homologous recombination. Cell Reports. 19(7), 1294–1303.","mla":"Lademann, Claudio, et al. “The INO80 Complex Removes H2A.Z to Promote Presynaptic Filament Formation during Homologous Recombination.” <i>Cell Reports</i>, vol. 19, no. 7, Cell Press, 2017, pp. 1294–303, doi:<a href=\"https://doi.org/10.1016/j.celrep.2017.04.051\">10.1016/j.celrep.2017.04.051</a>.","apa":"Lademann, C., Renkawitz, J., Pfander, B., &#38; Jentsch, S. (2017). The INO80 complex removes H2A.Z to promote presynaptic filament formation during homologous recombination. <i>Cell Reports</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.celrep.2017.04.051\">https://doi.org/10.1016/j.celrep.2017.04.051</a>","ama":"Lademann C, Renkawitz J, Pfander B, Jentsch S. The INO80 complex removes H2A.Z to promote presynaptic filament formation during homologous recombination. <i>Cell Reports</i>. 2017;19(7):1294-1303. doi:<a href=\"https://doi.org/10.1016/j.celrep.2017.04.051\">10.1016/j.celrep.2017.04.051</a>","ieee":"C. Lademann, J. Renkawitz, B. Pfander, and S. Jentsch, “The INO80 complex removes H2A.Z to promote presynaptic filament formation during homologous recombination,” <i>Cell Reports</i>, vol. 19, no. 7. Cell Press, pp. 1294–1303, 2017.","chicago":"Lademann, Claudio, Jörg Renkawitz, Boris Pfander, and Stefan Jentsch. “The INO80 Complex Removes H2A.Z to Promote Presynaptic Filament Formation during Homologous Recombination.” <i>Cell Reports</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.celrep.2017.04.051\">https://doi.org/10.1016/j.celrep.2017.04.051</a>."},"oa":1,"doi":"10.1016/j.celrep.2017.04.051","publication_status":"published","file":[{"date_updated":"2020-07-14T12:47:40Z","relation":"main_file","date_created":"2018-12-12T10:15:48Z","checksum":"efc7287d9c6354983cb151880e9ad72a","creator":"system","file_size":3005610,"file_id":"5171","content_type":"application/pdf","file_name":"IST-2017-899-v1+1_1-s2.0-S2211124717305454-main.pdf","access_level":"open_access"}],"title":"The INO80 complex removes H2A.Z to promote presynaptic filament formation during homologous recombination","_id":"677","publication":"Cell Reports"},{"language":[{"iso":"eng"}],"doi":"10.1038/ncb3524","publication_status":"published","year":"2017","publication_identifier":{"issn":["14657392"]},"_id":"678","title":"Multiscale force sensing in development","publication":"Nature Cell Biology","volume":19,"project":[{"name":"The generation and function of anisotropic tissue tension in zebrafish epiboly (EMBO Fellowship)","grant_number":"ALTF534-2016","_id":"25236028-B435-11E9-9278-68D0E5697425"}],"citation":{"chicago":"Petridou, Nicoletta, Zoltan P Spiro, and Carl-Philipp J Heisenberg. “Multiscale Force Sensing in Development.” <i>Nature Cell Biology</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/ncb3524\">https://doi.org/10.1038/ncb3524</a>.","ama":"Petridou N, Spiro ZP, Heisenberg C-PJ. Multiscale force sensing in development. <i>Nature Cell Biology</i>. 2017;19(6):581-588. doi:<a href=\"https://doi.org/10.1038/ncb3524\">10.1038/ncb3524</a>","ieee":"N. Petridou, Z. P. Spiro, and C.-P. J. Heisenberg, “Multiscale force sensing in development,” <i>Nature Cell Biology</i>, vol. 19, no. 6. Nature Publishing Group, pp. 581–588, 2017.","mla":"Petridou, Nicoletta, et al. “Multiscale Force Sensing in Development.” <i>Nature Cell Biology</i>, vol. 19, no. 6, Nature Publishing Group, 2017, pp. 581–88, doi:<a href=\"https://doi.org/10.1038/ncb3524\">10.1038/ncb3524</a>.","apa":"Petridou, N., Spiro, Z. P., &#38; Heisenberg, C.-P. J. (2017). Multiscale force sensing in development. <i>Nature Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncb3524\">https://doi.org/10.1038/ncb3524</a>","short":"N. Petridou, Z.P. Spiro, C.-P.J. Heisenberg, Nature Cell Biology 19 (2017) 581–588.","ista":"Petridou N, Spiro ZP, Heisenberg C-PJ. 2017. Multiscale force sensing in development. Nature Cell Biology. 19(6), 581–588."},"month":"05","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","page":"581 - 588","department":[{"_id":"CaHe"}],"oa_version":"None","publist_id":"7040","abstract":[{"lang":"eng","text":"The seminal observation that mechanical signals can elicit changes in biochemical signalling within cells, a process commonly termed mechanosensation and mechanotransduction, has revolutionized our understanding of the role of cell mechanics in various fundamental biological processes, such as cell motility, adhesion, proliferation and differentiation. In this Review, we will discuss how the interplay and feedback between mechanical and biochemical signals control tissue morphogenesis and cell fate specification in embryonic development."}],"status":"public","type":"journal_article","scopus_import":1,"day":"31","issue":"6","date_updated":"2021-01-12T08:08:59Z","intvolume":"        19","date_created":"2018-12-11T11:47:53Z","date_published":"2017-05-31T00:00:00Z","author":[{"orcid":"0000-0002-8451-1195","last_name":"Petridou","first_name":"Nicoletta","id":"2A003F6C-F248-11E8-B48F-1D18A9856A87","full_name":"Petridou, Nicoletta"},{"first_name":"Zoltan P","full_name":"Spiro, Zoltan P","id":"426AD026-F248-11E8-B48F-1D18A9856A87","last_name":"Spiro"},{"orcid":"0000-0002-0912-4566","last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","full_name":"Heisenberg, Carl-Philipp J"}],"quality_controlled":"1","publisher":"Nature Publishing Group"},{"language":[{"iso":"eng"}],"year":"2017","publication_identifier":{"issn":["00219738"]},"project":[{"grant_number":"T00817-B21","call_identifier":"FWF","_id":"25985A36-B435-11E9-9278-68D0E5697425","name":"The biochemical basis of PAR polarization"},{"grant_number":"P27201-B22","_id":"25E9AF9E-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Revealing the mechanisms underlying drug interactions"}],"volume":127,"department":[{"_id":"MiSi"}],"page":"2051 - 2065","pmid":1,"main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5451238/","open_access":"1"}],"month":"06","type":"journal_article","status":"public","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"12401"}]},"day":"01","abstract":[{"lang":"eng","text":"Protective responses against pathogens require a rapid mobilization of resting neutrophils and the timely removal of activated ones. Neutrophils are exceptionally short-lived leukocytes, yet it remains unclear whether the lifespan of pathogen-engaged neutrophils is regulated differently from that in the circulating steady-state pool. Here, we have found that under homeostatic conditions, the mRNA-destabilizing protein tristetraprolin (TTP) regulates apoptosis and the numbers of activated infiltrating murine neutrophils but not neutrophil cellularity. Activated TTP-deficient neutrophils exhibited decreased apoptosis and enhanced accumulation at the infection site. In the context of myeloid-specific deletion of Ttp, the potentiation of neutrophil deployment protected mice against lethal soft tissue infection with Streptococcus pyogenes and prevented bacterial dissemination. Neutrophil transcriptome analysis revealed that decreased apoptosis of TTP-deficient neutrophils was specifically associated with elevated expression of myeloid cell leukemia 1 (Mcl1) but not other antiapoptotic B cell leukemia/ lymphoma 2 (Bcl2) family members. Higher Mcl1 expression resulted from stabilization of Mcl1 mRNA in the absence of TTP. The low apoptosis rate of infiltrating TTP-deficient neutrophils was comparable to that of transgenic Mcl1-overexpressing neutrophils. Our study demonstrates that posttranscriptional gene regulation by TTP schedules the termination of the antimicrobial engagement of neutrophils. The balancing role of TTP comes at the cost of an increased risk of bacterial infections."}],"external_id":{"pmid":["28504646"]},"quality_controlled":"1","publisher":"American Society for Clinical Investigation","date_created":"2018-12-11T11:47:53Z","citation":{"ista":"Ebner F, Sedlyarov V, Tasciyan S, Ivin M, Kratochvill F, Gratz N, Kenner L, Villunger A, Sixt MK, Kovarik P. 2017. The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection. The Journal of Clinical Investigation. 127(6), 2051–2065.","short":"F. Ebner, V. Sedlyarov, S. Tasciyan, M. Ivin, F. Kratochvill, N. Gratz, L. Kenner, A. Villunger, M.K. Sixt, P. Kovarik, The Journal of Clinical Investigation 127 (2017) 2051–2065.","mla":"Ebner, Florian, et al. “The RNA-Binding Protein Tristetraprolin Schedules Apoptosis of Pathogen-Engaged Neutrophils during Bacterial Infection.” <i>The Journal of Clinical Investigation</i>, vol. 127, no. 6, American Society for Clinical Investigation, 2017, pp. 2051–65, doi:<a href=\"https://doi.org/10.1172/JCI80631\">10.1172/JCI80631</a>.","apa":"Ebner, F., Sedlyarov, V., Tasciyan, S., Ivin, M., Kratochvill, F., Gratz, N., … Kovarik, P. (2017). The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection. <i>The Journal of Clinical Investigation</i>. American Society for Clinical Investigation. <a href=\"https://doi.org/10.1172/JCI80631\">https://doi.org/10.1172/JCI80631</a>","chicago":"Ebner, Florian, Vitaly Sedlyarov, Saren Tasciyan, Masa Ivin, Franz Kratochvill, Nina Gratz, Lukas Kenner, Andreas Villunger, Michael K Sixt, and Pavel Kovarik. “The RNA-Binding Protein Tristetraprolin Schedules Apoptosis of Pathogen-Engaged Neutrophils during Bacterial Infection.” <i>The Journal of Clinical Investigation</i>. American Society for Clinical Investigation, 2017. <a href=\"https://doi.org/10.1172/JCI80631\">https://doi.org/10.1172/JCI80631</a>.","ieee":"F. Ebner <i>et al.</i>, “The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection,” <i>The Journal of Clinical Investigation</i>, vol. 127, no. 6. American Society for Clinical Investigation, pp. 2051–2065, 2017.","ama":"Ebner F, Sedlyarov V, Tasciyan S, et al. The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection. <i>The Journal of Clinical Investigation</i>. 2017;127(6):2051-2065. doi:<a href=\"https://doi.org/10.1172/JCI80631\">10.1172/JCI80631</a>"},"oa":1,"acknowledgement":"This work was supported by grants from the Austrian Science Fund (FWF) (P27538-B21, I1621-B22, and SFB 43, to PK); by funding from the European Union Seventh Framework Programme Marie Curie Initial Training Networks (FP7-PEOPLE-2012-ITN) for the project INBIONET (INfection BIOlogy Training NETwork under grant agreement PITN-GA-2012-316682; and by a joint research cluster initiative of the University of Vienna and the Medical University of Vienna.","doi":"10.1172/JCI80631","publication_status":"published","publication":"The Journal of Clinical Investigation","_id":"679","title":"The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":1,"oa_version":"Submitted Version","publist_id":"7038","date_published":"2017-06-01T00:00:00Z","author":[{"first_name":"Florian","full_name":"Ebner, Florian","last_name":"Ebner"},{"first_name":"Vitaly","full_name":"Sedlyarov, Vitaly","last_name":"Sedlyarov"},{"full_name":"Tasciyan, Saren","first_name":"Saren","id":"4323B49C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1671-393X","last_name":"Tasciyan"},{"first_name":"Masa","full_name":"Ivin, Masa","last_name":"Ivin"},{"first_name":"Franz","full_name":"Kratochvill, Franz","last_name":"Kratochvill"},{"last_name":"Gratz","full_name":"Gratz, Nina","first_name":"Nina"},{"first_name":"Lukas","full_name":"Kenner, Lukas","last_name":"Kenner"},{"full_name":"Villunger, Andreas","first_name":"Andreas","last_name":"Villunger"},{"full_name":"Sixt, Michael K","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","last_name":"Sixt","orcid":"0000-0002-6620-9179"},{"full_name":"Kovarik, Pavel","first_name":"Pavel","last_name":"Kovarik"}],"issue":"6","date_updated":"2024-03-25T23:30:12Z","intvolume":"       127"},{"year":"2017","language":[{"iso":"eng"}],"volume":13,"publication_identifier":{"issn":["1553734X"]},"month":"06","department":[{"_id":"GaTk"}],"ddc":["571"],"has_accepted_license":"1","abstract":[{"lang":"eng","text":"In order to respond reliably to specific features of their environment, sensory neurons need to integrate multiple incoming noisy signals. Crucially, they also need to compete for the interpretation of those signals with other neurons representing similar features. The form that this competition should take depends critically on the noise corrupting these signals. In this study we show that for the type of noise commonly observed in sensory systems, whose variance scales with the mean signal, sensory neurons should selectively divide their input signals by their predictions, suppressing ambiguous cues while amplifying others. Any change in the stimulus context alters which inputs are suppressed, leading to a deep dynamic reshaping of neural receptive fields going far beyond simple surround suppression. Paradoxically, these highly variable receptive fields go alongside and are in fact required for an invariant representation of external sensory features. In addition to offering a normative account of context-dependent changes in sensory responses, perceptual inference in the presence of signal-dependent noise accounts for ubiquitous features of sensory neurons such as divisive normalization, gain control and contrast dependent temporal dynamics."}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"type":"journal_article","status":"public","day":"01","file_date_updated":"2020-07-14T12:47:40Z","related_material":{"record":[{"relation":"research_data","status":"public","id":"9855"}]},"date_created":"2018-12-11T11:47:53Z","quality_controlled":"1","publisher":"Public Library of Science","publication_status":"published","file":[{"access_level":"open_access","content_type":"application/pdf","file_id":"4645","file_name":"IST-2017-898-v1+1_journal.pcbi.1005582.pdf","creator":"system","file_size":14555676,"checksum":"796a1026076af6f4405a47d985bc7b68","date_updated":"2020-07-14T12:47:40Z","date_created":"2018-12-12T10:07:47Z","relation":"main_file"}],"doi":"10.1371/journal.pcbi.1005582","publication":"PLoS Computational Biology","_id":"680","title":"Sensory noise predicts divisive reshaping of receptive fields","article_number":"e1005582","citation":{"mla":"Chalk, Matthew J., et al. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.” <i>PLoS Computational Biology</i>, vol. 13, no. 6, e1005582, Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1005582\">10.1371/journal.pcbi.1005582</a>.","apa":"Chalk, M. J., Masset, P., Gutkin, B., &#38; Denève, S. (2017). Sensory noise predicts divisive reshaping of receptive fields. <i>PLoS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1005582\">https://doi.org/10.1371/journal.pcbi.1005582</a>","ista":"Chalk MJ, Masset P, Gutkin B, Denève S. 2017. Sensory noise predicts divisive reshaping of receptive fields. PLoS Computational Biology. 13(6), e1005582.","short":"M.J. Chalk, P. Masset, B. Gutkin, S. Denève, PLoS Computational Biology 13 (2017).","ieee":"M. J. Chalk, P. Masset, B. Gutkin, and S. Denève, “Sensory noise predicts divisive reshaping of receptive fields,” <i>PLoS Computational Biology</i>, vol. 13, no. 6. Public Library of Science, 2017.","ama":"Chalk MJ, Masset P, Gutkin B, Denève S. Sensory noise predicts divisive reshaping of receptive fields. <i>PLoS Computational Biology</i>. 2017;13(6). doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1005582\">10.1371/journal.pcbi.1005582</a>","chicago":"Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.” <i>PLoS Computational Biology</i>. Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pcbi.1005582\">https://doi.org/10.1371/journal.pcbi.1005582</a>."},"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pubrep_id":"898","publist_id":"7035","oa_version":"Published Version","scopus_import":1,"issue":"6","intvolume":"        13","date_updated":"2023-02-23T14:10:54Z","date_published":"2017-06-01T00:00:00Z","author":[{"id":"2BAAC544-F248-11E8-B48F-1D18A9856A87","full_name":"Chalk, Matthew J","first_name":"Matthew J","orcid":"0000-0001-7782-4436","last_name":"Chalk"},{"first_name":"Paul","full_name":"Masset, Paul","last_name":"Masset"},{"last_name":"Gutkin","full_name":"Gutkin, Boris","first_name":"Boris"},{"full_name":"Denève, Sophie","first_name":"Sophie","last_name":"Denève"}]},{"status":"public","type":"journal_article","related_material":{"record":[{"relation":"earlier_version","id":"10885","status":"public"}]},"day":"01","abstract":[{"lang":"eng","text":"Two-player games on graphs provide the theoretical framework for many important problems such as reactive synthesis. While the traditional study of two-player zero-sum games has been extended to multi-player games with several notions of equilibria, they are decidable only for perfect-information games, whereas several applications require imperfect-information. In this paper we propose a new notion of equilibria, called doomsday equilibria, which is a strategy profile where all players satisfy their own objective, and if any coalition of players deviates and violates even one of the players' objective, then the objective of every player is violated. We present algorithms and complexity results for deciding the existence of doomsday equilibria for various classes of ω-regular objectives, both for imperfect-information games, and for perfect-information games. We provide optimal complexity bounds for imperfect-information games, and in most cases for perfect-information games."}],"external_id":{"arxiv":["1311.3238"]},"publisher":"Elsevier","quality_controlled":"1","date_created":"2018-12-11T11:47:53Z","language":[{"iso":"eng"}],"year":"2017","publication_identifier":{"issn":["08905401"]},"volume":254,"project":[{"name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","_id":"2584A770-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"call_identifier":"FWF","grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory"},{"grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications"},{"call_identifier":"FP7","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}],"page":"296 - 315","department":[{"_id":"KrCh"}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1311.3238"}],"article_type":"original","month":"06","scopus_import":"1","oa_version":"Submitted Version","publist_id":"7036","date_published":"2017-06-01T00:00:00Z","author":[{"last_name":"Chatterjee","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Doyen, Laurent","first_name":"Laurent","last_name":"Doyen"},{"first_name":"Emmanuel","full_name":"Filiot, Emmanuel","last_name":"Filiot"},{"full_name":"Raskin, Jean","first_name":"Jean","last_name":"Raskin"}],"date_updated":"2023-02-21T16:06:02Z","intvolume":"       254","ec_funded":1,"arxiv":1,"citation":{"mla":"Chatterjee, Krishnendu, et al. “Doomsday Equilibria for Omega-Regular Games.” <i>Information and Computation</i>, vol. 254, Elsevier, 2017, pp. 296–315, doi:<a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">10.1016/j.ic.2016.10.012</a>.","apa":"Chatterjee, K., Doyen, L., Filiot, E., &#38; Raskin, J. (2017). Doomsday equilibria for omega-regular games. <i>Information and Computation</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">https://doi.org/10.1016/j.ic.2016.10.012</a>","ista":"Chatterjee K, Doyen L, Filiot E, Raskin J. 2017. Doomsday equilibria for omega-regular games. Information and Computation. 254, 296–315.","short":"K. Chatterjee, L. Doyen, E. Filiot, J. Raskin, Information and Computation 254 (2017) 296–315.","ama":"Chatterjee K, Doyen L, Filiot E, Raskin J. Doomsday equilibria for omega-regular games. <i>Information and Computation</i>. 2017;254:296-315. doi:<a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">10.1016/j.ic.2016.10.012</a>","ieee":"K. Chatterjee, L. Doyen, E. Filiot, and J. Raskin, “Doomsday equilibria for omega-regular games,” <i>Information and Computation</i>, vol. 254. Elsevier, pp. 296–315, 2017.","chicago":"Chatterjee, Krishnendu, Laurent Doyen, Emmanuel Filiot, and Jean Raskin. “Doomsday Equilibria for Omega-Regular Games.” <i>Information and Computation</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">https://doi.org/10.1016/j.ic.2016.10.012</a>."},"oa":1,"doi":"10.1016/j.ic.2016.10.012","publication_status":"published","_id":"681","publication":"Information and Computation","title":"Doomsday equilibria for omega-regular games","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"author":[{"first_name":"Hikari","full_name":"Ukai, Hikari","last_name":"Ukai"},{"last_name":"Kawahara","full_name":"Kawahara, Aiko","first_name":"Aiko"},{"last_name":"Hirayama","full_name":"Hirayama, Keiko","first_name":"Keiko"},{"last_name":"Case","full_name":"Case, Matthew J","id":"44B7CA5A-F248-11E8-B48F-1D18A9856A87","first_name":"Matthew J"},{"last_name":"Aino","full_name":"Aino, Shotaro","first_name":"Shotaro"},{"last_name":"Miyabe","first_name":"Masahiro","full_name":"Miyabe, Masahiro"},{"full_name":"Wakita, Ken","first_name":"Ken","last_name":"Wakita"},{"last_name":"Oogi","full_name":"Oogi, Ryohei","first_name":"Ryohei"},{"last_name":"Kasayuki","full_name":"Kasayuki, Michiyo","first_name":"Michiyo"},{"last_name":"Kawashima","first_name":"Shihomi","full_name":"Kawashima, Shihomi"},{"full_name":"Sugimoto, Shunichi","first_name":"Shunichi","last_name":"Sugimoto"},{"last_name":"Chikamatsu","full_name":"Chikamatsu, Kanako","first_name":"Kanako"},{"first_name":"Noritaka","full_name":"Nitta, Noritaka","last_name":"Nitta"},{"first_name":"Tsuneyuki","full_name":"Koga, Tsuneyuki","last_name":"Koga"},{"orcid":"0000-0001-8761-9444","last_name":"Shigemoto","full_name":"Shigemoto, Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi"},{"full_name":"Takai, Toshiyuki","first_name":"Toshiyuki","last_name":"Takai"},{"last_name":"Ito","full_name":"Ito, Isao","first_name":"Isao"}],"date_published":"2017-06-01T00:00:00Z","date_updated":"2024-03-25T23:30:07Z","intvolume":"        12","issue":"6","scopus_import":1,"oa_version":"Published Version","pubrep_id":"897","publist_id":"7034","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"citation":{"ieee":"H. Ukai <i>et al.</i>, “PirB regulates asymmetries in hippocampal circuitry,” <i>PLoS One</i>, vol. 12, no. 6. Public Library of Science, 2017.","ama":"Ukai H, Kawahara A, Hirayama K, et al. PirB regulates asymmetries in hippocampal circuitry. <i>PLoS One</i>. 2017;12(6). doi:<a href=\"https://doi.org/10.1371/journal.pone.0179377\">10.1371/journal.pone.0179377</a>","chicago":"Ukai, Hikari, Aiko Kawahara, Keiko Hirayama, Matthew J Case, Shotaro Aino, Masahiro Miyabe, Ken Wakita, et al. “PirB Regulates Asymmetries in Hippocampal Circuitry.” <i>PLoS One</i>. Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pone.0179377\">https://doi.org/10.1371/journal.pone.0179377</a>.","mla":"Ukai, Hikari, et al. “PirB Regulates Asymmetries in Hippocampal Circuitry.” <i>PLoS One</i>, vol. 12, no. 6, e0179377, Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pone.0179377\">10.1371/journal.pone.0179377</a>.","apa":"Ukai, H., Kawahara, A., Hirayama, K., Case, M. J., Aino, S., Miyabe, M., … Ito, I. (2017). PirB regulates asymmetries in hippocampal circuitry. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0179377\">https://doi.org/10.1371/journal.pone.0179377</a>","short":"H. Ukai, A. Kawahara, K. Hirayama, M.J. Case, S. Aino, M. Miyabe, K. Wakita, R. Oogi, M. Kasayuki, S. Kawashima, S. Sugimoto, K. Chikamatsu, N. Nitta, T. Koga, R. Shigemoto, T. Takai, I. Ito, PLoS One 12 (2017).","ista":"Ukai H, Kawahara A, Hirayama K, Case MJ, Aino S, Miyabe M, Wakita K, Oogi R, Kasayuki M, Kawashima S, Sugimoto S, Chikamatsu K, Nitta N, Koga T, Shigemoto R, Takai T, Ito I. 2017. PirB regulates asymmetries in hippocampal circuitry. PLoS One. 12(6), e0179377."},"article_number":"e0179377","_id":"682","title":"PirB regulates asymmetries in hippocampal circuitry","publication":"PLoS One","doi":"10.1371/journal.pone.0179377","file":[{"access_level":"open_access","file_id":"4934","content_type":"application/pdf","file_name":"IST-2017-897-v1+1_journal.pone.0179377.pdf","checksum":"24dd19c46fb1c761b0bcbbcd1025a3a8","creator":"system","file_size":5798454,"date_updated":"2020-07-14T12:47:40Z","date_created":"2018-12-12T10:12:16Z","relation":"main_file"}],"publication_status":"published","publisher":"Public Library of Science","quality_controlled":"1","date_created":"2018-12-11T11:47:54Z","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"51"}]},"day":"01","file_date_updated":"2020-07-14T12:47:40Z","type":"journal_article","status":"public","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"abstract":[{"lang":"eng","text":"Left-right asymmetry is a fundamental feature of higher-order brain structure; however, the molecular basis of brain asymmetry remains unclear. We recently identified structural and functional asymmetries in mouse hippocampal circuitry that result from the asymmetrical distribution of two distinct populations of pyramidal cell synapses that differ in the density of the NMDA receptor subunit GluRε2 (also known as NR2B, GRIN2B or GluN2B). By examining the synaptic distribution of ε2 subunits, we previously found that β2-microglobulin-deficient mice, which lack cell surface expression of the vast majority of major histocompatibility complex class I (MHCI) proteins, do not exhibit circuit asymmetry. In the present study, we conducted electrophysiological and anatomical analyses on the hippocampal circuitry of mice with a knockout of the paired immunoglobulin-like receptor B (PirB), an MHCI receptor. As in β2-microglobulin-deficient mice, the PirB-deficient hippocampus lacked circuit asymmetries. This finding that MHCI loss-of-function mice and PirB knockout mice have identical phenotypes suggests that MHCI signals that produce hippocampal asymmetries are transduced through PirB. Our results provide evidence for a critical role of the MHCI/PirB signaling system in the generation of asymmetries in hippocampal circuitry."}],"has_accepted_license":"1","ddc":["571"],"department":[{"_id":"RySh"}],"article_type":"original","month":"06","publication_identifier":{"issn":["19326203"]},"volume":12,"language":[{"iso":"eng"}],"year":"2017"},{"oa":1,"citation":{"ama":"Lubiw A, Masárová Z, Wagner U. A proof of the orbit conjecture for flipping edge labelled triangulations. In: Vol 77. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2017. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.49\">10.4230/LIPIcs.SoCG.2017.49</a>","ieee":"A. Lubiw, Z. Masárová, and U. Wagner, “A proof of the orbit conjecture for flipping edge labelled triangulations,” presented at the SoCG: Symposium on Computational Geometry, Brisbane, Australia, 2017, vol. 77.","chicago":"Lubiw, Anna, Zuzana Masárová, and Uli Wagner. “A Proof of the Orbit Conjecture for Flipping Edge Labelled Triangulations,” Vol. 77. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.49\">https://doi.org/10.4230/LIPIcs.SoCG.2017.49</a>.","short":"A. Lubiw, Z. Masárová, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.","ista":"Lubiw A, Masárová Z, Wagner U. 2017. A proof of the orbit conjecture for flipping edge labelled triangulations. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 77, 49.","apa":"Lubiw, A., Masárová, Z., &#38; Wagner, U. (2017). A proof of the orbit conjecture for flipping edge labelled triangulations (Vol. 77). Presented at the SoCG: Symposium on Computational Geometry, Brisbane, Australia: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.49\">https://doi.org/10.4230/LIPIcs.SoCG.2017.49</a>","mla":"Lubiw, Anna, et al. <i>A Proof of the Orbit Conjecture for Flipping Edge Labelled Triangulations</i>. Vol. 77, 49, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.49\">10.4230/LIPIcs.SoCG.2017.49</a>."},"article_number":"49","title":"A proof of the orbit conjecture for flipping edge labelled triangulations","_id":"683","publication_status":"published","file":[{"file_id":"5265","content_type":"application/pdf","file_name":"IST-2017-896-v1+1_LIPIcs-SoCG-2017-49.pdf","access_level":"open_access","date_updated":"2020-07-14T12:47:41Z","relation":"main_file","date_created":"2018-12-12T10:17:12Z","creator":"system","file_size":710007,"checksum":"24fdde981cc513352a78dcf9b0660ae9"}],"doi":"10.4230/LIPIcs.SoCG.2017.49","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","alternative_title":["LIPIcs"],"scopus_import":1,"pubrep_id":"896","publist_id":"7033","oa_version":"Published Version","author":[{"first_name":"Anna","full_name":"Lubiw, Anna","last_name":"Lubiw"},{"orcid":"0000-0002-6660-1322","last_name":"Masárová","full_name":"Masárová, Zuzana","id":"45CFE238-F248-11E8-B48F-1D18A9856A87","first_name":"Zuzana"},{"last_name":"Wagner","orcid":"0000-0002-1494-0568","first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","full_name":"Wagner, Uli"}],"date_published":"2017-06-01T00:00:00Z","intvolume":"        77","date_updated":"2023-09-05T15:01:43Z","conference":{"location":"Brisbane, Australia","end_date":"2017-07-07","name":"SoCG: Symposium on Computational Geometry","start_date":"2017-07-04"},"volume":77,"year":"2017","language":[{"iso":"eng"}],"department":[{"_id":"UlWa"}],"month":"06","day":"01","file_date_updated":"2020-07-14T12:47:41Z","related_material":{"record":[{"relation":"later_version","id":"5986","status":"public"}]},"status":"public","type":"conference","abstract":[{"lang":"eng","text":"Given a triangulation of a point set in the plane, a flip deletes an edge e whose removal leaves a convex quadrilateral, and replaces e by the opposite diagonal of the quadrilateral. It is well known that any triangulation of a point set can be reconfigured to any other triangulation by some sequence of flips. We explore this question in the setting where each edge of a triangulation has a label, and a flip transfers the label of the removed edge to the new edge. It is not true that every labelled triangulation of a point set can be reconfigured to every other labelled triangulation via a sequence of flips, but we characterize when this is possible. There is an obvious necessary condition: for each label l, if edge e has label l in the first triangulation and edge f has label l in the second triangulation, then there must be some sequence of flips that moves label l from e to f, ignoring all other labels. Bose, Lubiw, Pathak and Verdonschot formulated the Orbit Conjecture, which states that this necessary condition is also sufficient, i.e. that all labels can be simultaneously mapped to their destination if and only if each label individually can be mapped to its destination. We prove this conjecture. Furthermore, we give a polynomial-time algorithm to find a sequence of flips to reconfigure one labelled triangulation to another, if such a sequence exists, and we prove an upper bound of O(n7) on the length of the flip sequence. Our proof uses the topological result that the sets of pairwise non-crossing edges on a planar point set form a simplicial complex that is homeomorphic to a high-dimensional ball (this follows from a result of Orden and Santos; we give a different proof based on a shelling argument). The dual cell complex of this simplicial ball, called the flip complex, has the usual flip graph as its 1-skeleton. We use properties of the 2-skeleton of the flip complex to prove the Orbit Conjecture."}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"ddc":["514","516"],"has_accepted_license":"1","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","quality_controlled":"1","date_created":"2018-12-11T11:47:54Z"},{"doi":"10.1017/jsl.2016.71","publication_status":"published","publication":"Journal of Symbolic Logic","_id":"684","article_processing_charge":"No","title":"Obligation blackwell games and p-automata","citation":{"mla":"Chatterjee, Krishnendu, and Nir Piterman. “Obligation Blackwell Games and P-Automata.” <i>Journal of Symbolic Logic</i>, vol. 82, no. 2, Cambridge University Press, 2017, pp. 420–52, doi:<a href=\"https://doi.org/10.1017/jsl.2016.71\">10.1017/jsl.2016.71</a>.","apa":"Chatterjee, K., &#38; Piterman, N. (2017). Obligation blackwell games and p-automata. <i>Journal of Symbolic Logic</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jsl.2016.71\">https://doi.org/10.1017/jsl.2016.71</a>","short":"K. Chatterjee, N. Piterman, Journal of Symbolic Logic 82 (2017) 420–452.","ista":"Chatterjee K, Piterman N. 2017. Obligation blackwell games and p-automata. Journal of Symbolic Logic. 82(2), 420–452.","chicago":"Chatterjee, Krishnendu, and Nir Piterman. “Obligation Blackwell Games and P-Automata.” <i>Journal of Symbolic Logic</i>. Cambridge University Press, 2017. <a href=\"https://doi.org/10.1017/jsl.2016.71\">https://doi.org/10.1017/jsl.2016.71</a>.","ama":"Chatterjee K, Piterman N. Obligation blackwell games and p-automata. <i>Journal of Symbolic Logic</i>. 2017;82(2):420-452. doi:<a href=\"https://doi.org/10.1017/jsl.2016.71\">10.1017/jsl.2016.71</a>","ieee":"K. Chatterjee and N. Piterman, “Obligation blackwell games and p-automata,” <i>Journal of Symbolic Logic</i>, vol. 82, no. 2. Cambridge University Press, pp. 420–452, 2017."},"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","publist_id":"7026","scopus_import":"1","issue":"2","date_updated":"2021-04-16T12:10:53Z","intvolume":"        82","date_published":"2017-06-01T00:00:00Z","author":[{"first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","last_name":"Chatterjee"},{"first_name":"Nir","full_name":"Piterman, Nir","last_name":"Piterman"}],"language":[{"iso":"eng"}],"year":"2017","publication_identifier":{"issn":["0022-4812"],"eissn":["1943-5886"]},"volume":82,"main_file_link":[{"url":"https://arxiv.org/abs/1206.5174","open_access":"1"}],"month":"06","page":"420 - 452","department":[{"_id":"KrCh"}],"abstract":[{"lang":"eng","text":"We generalize winning conditions in two-player games by adding a structural acceptance condition called obligations. Obligations are orthogonal to the linear winning conditions that define whether a play is winning. Obligations are a declaration that player 0 can achieve a certain value from a configuration. If the obligation is met, the value of that configuration for player 0 is 1. We define the value in such games and show that obligation games are determined. For Markov chains with Borel objectives and obligations, and finite turn-based stochastic parity games with obligations we give an alternative and simpler characterization of the value function. Based on this simpler definition we show that the decision problem of winning finite turn-based stochastic parity games with obligations is in NP∩co-NP. We also show that obligation games provide a game framework for reasoning about p-automata. © 2017 The Association for Symbolic Logic."}],"status":"public","type":"journal_article","day":"01","date_created":"2018-12-11T11:47:54Z","quality_controlled":"1","publisher":"Cambridge University Press"},{"main_file_link":[{"url":"https://arxiv.org/abs/1610.02995","open_access":"1"}],"month":"02","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"ChLa"}],"language":[{"iso":"eng"}],"publication_status":"published","year":"2017","_id":"6841","title":"Extrapolation and learning equations","project":[{"name":"Lifelong Learning of Visual Scene Understanding","call_identifier":"FP7","grant_number":"308036","_id":"2532554C-B435-11E9-9278-68D0E5697425"}],"publication":"5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings","citation":{"mla":"Martius, Georg S., and Christoph Lampert. “Extrapolation and Learning Equations.” <i>5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings</i>, International Conference on Learning Representations, 2017.","apa":"Martius, G. S., &#38; Lampert, C. (2017). Extrapolation and learning equations. In <i>5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings</i>. Toulon, France: International Conference on Learning Representations.","short":"G.S. Martius, C. Lampert, in:, 5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings, International Conference on Learning Representations, 2017.","ista":"Martius GS, Lampert C. 2017. Extrapolation and learning equations. 5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings. ICLR: International Conference on Learning Representations.","ama":"Martius GS, Lampert C. Extrapolation and learning equations. In: <i>5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings</i>. International Conference on Learning Representations; 2017.","ieee":"G. S. Martius and C. Lampert, “Extrapolation and learning equations,” in <i>5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings</i>, Toulon, France, 2017.","chicago":"Martius, Georg S, and Christoph Lampert. “Extrapolation and Learning Equations.” In <i>5th International Conference on Learning Representations, ICLR 2017 - Workshop Track Proceedings</i>. International Conference on Learning Representations, 2017."},"arxiv":1,"oa":1,"conference":{"location":"Toulon, France","end_date":"2017-04-26","name":"ICLR: International Conference on Learning Representations","start_date":"2017-04-24"},"date_updated":"2021-01-12T08:09:17Z","ec_funded":1,"date_created":"2019-09-01T22:01:00Z","date_published":"2017-02-21T00:00:00Z","external_id":{"arxiv":["1610.02995"]},"quality_controlled":"1","publisher":"International Conference on Learning Representations","author":[{"last_name":"Martius","first_name":"Georg S","full_name":"Martius, Georg S","id":"3A276B68-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lampert, Christoph","first_name":"Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887","last_name":"Lampert"}],"oa_version":"Preprint","abstract":[{"text":"In classical machine learning, regression is treated as a black box process of identifying a suitable function from a hypothesis set without attempting to gain insight into the mechanism connecting inputs and outputs. In the natural sciences, however, finding an interpretable function for a phenomenon is the prime goal as it allows to understand and generalize results. This paper proposes a novel type of function learning network, called equation learner (EQL), that can learn analytical expressions and is able to extrapolate to unseen domains. It is implemented as an end-to-end differentiable feed-forward network and allows for efficient gradient based training. Due to sparsity regularization concise interpretable expressions can be obtained. Often the true underlying source expression is identified.","lang":"eng"}],"type":"conference","status":"public","scopus_import":1,"day":"21"},{"publication_identifier":{"issn":["09254773"]},"volume":145,"project":[{"grant_number":"680037","call_identifier":"H2020","_id":"B6FC0238-B512-11E9-945C-1524E6697425","name":"Coordination of Patterning And Growth In the Spinal Cord"}],"language":[{"iso":"eng"}],"year":"2017","month":"06","pmid":1,"page":"26 - 31","department":[{"_id":"AnKi"}],"abstract":[{"text":"By applying methods and principles from the physical sciences to biological problems, D'Arcy Thompson's On Growth and Form demonstrated how mathematical reasoning reveals elegant, simple explanations for seemingly complex processes. This has had a profound influence on subsequent generations of developmental biologists. We discuss how this influence can be traced through twentieth century morphologists, embryologists and theoreticians to current research that explores the molecular and cellular mechanisms of tissue growth and patterning, including our own studies of the vertebrate neural tube.","lang":"eng"}],"has_accepted_license":"1","ddc":["571"],"day":"01","file_date_updated":"2020-07-14T12:47:42Z","type":"journal_article","status":"public","date_created":"2018-12-11T11:47:55Z","external_id":{"pmid":["28366718"]},"quality_controlled":"1","publisher":"Elsevier","publication":"Mechanisms of Development","_id":"685","title":"The physics of development 100 years after D'Arcy Thompson's “on growth and form”","doi":"10.1016/j.mod.2017.03.005","file":[{"relation":"main_file","date_created":"2019-04-17T07:58:48Z","date_updated":"2020-07-14T12:47:42Z","file_size":652313,"creator":"dernst","checksum":"727043d2e4199fbef6b3704e6d1ac105","file_name":"2017_Briscoe_Kicheva_and_DArcy_accepted_version.pdf","file_id":"6335","content_type":"application/pdf","access_level":"open_access"}],"publication_status":"published","oa":1,"citation":{"ama":"Briscoe J, Kicheva A. The physics of development 100 years after D’Arcy Thompson’s “on growth and form.” <i>Mechanisms of Development</i>. 2017;145:26-31. doi:<a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">10.1016/j.mod.2017.03.005</a>","ieee":"J. Briscoe and A. Kicheva, “The physics of development 100 years after D’Arcy Thompson’s ‘on growth and form,’” <i>Mechanisms of Development</i>, vol. 145. Elsevier, pp. 26–31, 2017.","chicago":"Briscoe, James, and Anna Kicheva. “The Physics of Development 100 Years after D’Arcy Thompson’s ‘on Growth and Form.’” <i>Mechanisms of Development</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">https://doi.org/10.1016/j.mod.2017.03.005</a>.","short":"J. Briscoe, A. Kicheva, Mechanisms of Development 145 (2017) 26–31.","ista":"Briscoe J, Kicheva A. 2017. The physics of development 100 years after D’Arcy Thompson’s “on growth and form”. Mechanisms of Development. 145, 26–31.","apa":"Briscoe, J., &#38; Kicheva, A. (2017). The physics of development 100 years after D’Arcy Thompson’s “on growth and form.” <i>Mechanisms of Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">https://doi.org/10.1016/j.mod.2017.03.005</a>","mla":"Briscoe, James, and Anna Kicheva. “The Physics of Development 100 Years after D’Arcy Thompson’s ‘on Growth and Form.’” <i>Mechanisms of Development</i>, vol. 145, Elsevier, 2017, pp. 26–31, doi:<a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">10.1016/j.mod.2017.03.005</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","pubrep_id":"985","publist_id":"7025","scopus_import":1,"date_updated":"2021-01-12T08:09:20Z","ec_funded":1,"intvolume":"       145","author":[{"last_name":"Briscoe","first_name":"James","full_name":"Briscoe, James"},{"last_name":"Kicheva","orcid":"0000-0003-4509-4998","full_name":"Kicheva, Anna","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","first_name":"Anna"}],"date_published":"2017-06-01T00:00:00Z"},{"year":"2017","publication_status":"published","doi":"10.1016/j.mod.2017.03.006","language":[{"iso":"eng"}],"_id":"686","publication":"Mechanisms of Development","volume":145,"title":"D'Arcy Thompson's ‘on growth and form’: From soap bubbles to tissue self organization","publication_identifier":{"issn":["09254773"]},"citation":{"mla":"Heisenberg, Carl-Philipp J. “D’Arcy Thompson’s ‘on Growth and Form’: From Soap Bubbles to Tissue Self Organization.” <i>Mechanisms of Development</i>, vol. 145, Elsevier, 2017, pp. 32–37, doi:<a href=\"https://doi.org/10.1016/j.mod.2017.03.006\">10.1016/j.mod.2017.03.006</a>.","apa":"Heisenberg, C.-P. J. (2017). D’Arcy Thompson’s ‘on growth and form’: From soap bubbles to tissue self organization. <i>Mechanisms of Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.mod.2017.03.006\">https://doi.org/10.1016/j.mod.2017.03.006</a>","ista":"Heisenberg C-PJ. 2017. D’Arcy Thompson’s ‘on growth and form’: From soap bubbles to tissue self organization. Mechanisms of Development. 145, 32–37.","short":"C.-P.J. Heisenberg, Mechanisms of Development 145 (2017) 32–37.","ama":"Heisenberg C-PJ. D’Arcy Thompson’s ‘on growth and form’: From soap bubbles to tissue self organization. <i>Mechanisms of Development</i>. 2017;145:32-37. doi:<a href=\"https://doi.org/10.1016/j.mod.2017.03.006\">10.1016/j.mod.2017.03.006</a>","ieee":"C.-P. J. Heisenberg, “D’Arcy Thompson’s ‘on growth and form’: From soap bubbles to tissue self organization,” <i>Mechanisms of Development</i>, vol. 145. Elsevier, pp. 32–37, 2017.","chicago":"Heisenberg, Carl-Philipp J. “D’Arcy Thompson’s ‘on Growth and Form’: From Soap Bubbles to Tissue Self Organization.” <i>Mechanisms of Development</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.mod.2017.03.006\">https://doi.org/10.1016/j.mod.2017.03.006</a>."},"month":"06","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"CaHe"}],"page":"32 - 37","publist_id":"7024","oa_version":"None","abstract":[{"lang":"eng","text":"Tissues are thought to behave like fluids with a given surface tension. Differences in tissue surface tension (TST) have been proposed to trigger cell sorting and tissue envelopment. D'Arcy Thompson in his seminal book ‘On Growth and Form’ has introduced this concept of differential TST as a key physical mechanism dictating tissue formation and organization within the developing organism. Over the past century, many studies have picked up the concept of differential TST and analyzed the role and cell biological basis of TST in development, underlining the importance and influence of this concept in developmental biology."}],"scopus_import":1,"status":"public","type":"journal_article","day":"01","date_created":"2018-12-11T11:47:55Z","intvolume":"       145","date_updated":"2021-01-12T08:09:23Z","date_published":"2017-06-01T00:00:00Z","publisher":"Elsevier","quality_controlled":"1","author":[{"orcid":"0000-0002-0912-4566","last_name":"Heisenberg","full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J"}]},{"year":"2017","language":[{"iso":"eng"}],"project":[{"_id":"25E549F4-B435-11E9-9278-68D0E5697425","grant_number":"320593","call_identifier":"FP7","name":"Arithmetic and physics of Higgs moduli spaces"}],"volume":68,"publication_identifier":{"issn":["00335606"]},"page":"635 - 703","department":[{"_id":"TaHa"}],"month":"06","main_file_link":[{"url":"https://arxiv.org/abs/1311.7172","open_access":"1"}],"type":"journal_article","status":"public","day":"01","abstract":[{"lang":"eng","text":"Pursuing the similarity between the Kontsevich-Soibelman construction of the cohomological Hall algebra (CoHA) of BPS states and Lusztig's construction of canonical bases for quantum enveloping algebras, and the similarity between the integrality conjecture for motivic Donaldson-Thomas invariants and the PBW theorem for quantum enveloping algebras, we build a coproduct on the CoHA associated to a quiver with potential. We also prove a cohomological dimensional reduction theorem, further linking a special class of CoHAs with Yangians, and explaining how to connect the study of character varieties with the study of CoHAs."}],"publisher":"Oxford University Press","quality_controlled":"1","date_created":"2018-12-11T11:47:55Z","citation":{"chicago":"Davison, Ben. “The Critical CoHA of a Quiver with Potential.” <i>Quarterly Journal of Mathematics</i>. Oxford University Press, 2017. <a href=\"https://doi.org/10.1093/qmath/haw053\">https://doi.org/10.1093/qmath/haw053</a>.","ieee":"B. Davison, “The critical CoHA of a quiver with potential,” <i>Quarterly Journal of Mathematics</i>, vol. 68, no. 2. Oxford University Press, pp. 635–703, 2017.","ama":"Davison B. The critical CoHA of a quiver with potential. <i>Quarterly Journal of Mathematics</i>. 2017;68(2):635-703. doi:<a href=\"https://doi.org/10.1093/qmath/haw053\">10.1093/qmath/haw053</a>","ista":"Davison B. 2017. The critical CoHA of a quiver with potential. Quarterly Journal of Mathematics. 68(2), 635–703.","short":"B. Davison, Quarterly Journal of Mathematics 68 (2017) 635–703.","apa":"Davison, B. (2017). The critical CoHA of a quiver with potential. <i>Quarterly Journal of Mathematics</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/qmath/haw053\">https://doi.org/10.1093/qmath/haw053</a>","mla":"Davison, Ben. “The Critical CoHA of a Quiver with Potential.” <i>Quarterly Journal of Mathematics</i>, vol. 68, no. 2, Oxford University Press, 2017, pp. 635–703, doi:<a href=\"https://doi.org/10.1093/qmath/haw053\">10.1093/qmath/haw053</a>."},"oa":1,"publication_status":"published","doi":"10.1093/qmath/haw053","_id":"687","publication":"Quarterly Journal of Mathematics","title":"The critical CoHA of a quiver with potential","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":1,"publist_id":"7022","oa_version":"Submitted Version","date_published":"2017-06-01T00:00:00Z","author":[{"last_name":"Davison","orcid":"0000-0002-8944-4390","full_name":"Davison, Ben","id":"4634AB1E-F248-11E8-B48F-1D18A9856A87","first_name":"Ben"}],"issue":"2","intvolume":"        68","ec_funded":1,"date_updated":"2021-01-12T08:09:24Z"},{"file_date_updated":"2020-07-14T12:47:42Z","day":"01","status":"public","type":"conference","abstract":[{"text":"We show that the framework of topological data analysis can be extended from metrics to general Bregman divergences, widening the scope of possible applications. Examples are the Kullback - Leibler divergence, which is commonly used for comparing text and images, and the Itakura - Saito divergence, popular for speech and sound. In particular, we prove that appropriately generalized čech and Delaunay (alpha) complexes capture the correct homotopy type, namely that of the corresponding union of Bregman balls. Consequently, their filtrations give the correct persistence diagram, namely the one generated by the uniformly growing Bregman balls. Moreover, we show that unlike the metric setting, the filtration of Vietoris-Rips complexes may fail to approximate the persistence diagram. We propose algorithms to compute the thus generalized čech, Vietoris-Rips and Delaunay complexes and experimentally test their efficiency. Lastly, we explain their surprisingly good performance by making a connection with discrete Morse theory. ","lang":"eng"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"ddc":["514","516"],"has_accepted_license":"1","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","quality_controlled":"1","date_created":"2018-12-11T11:47:56Z","conference":{"start_date":"2017-07-04","name":"Symposium on Computational Geometry, SoCG","end_date":"2017-07-07","location":"Brisbane, Australia"},"volume":77,"publication_identifier":{"issn":["18688969"]},"year":"2017","language":[{"iso":"eng"}],"page":"391-3916","department":[{"_id":"HeEd"},{"_id":"UlWa"}],"month":"06","alternative_title":["LIPIcs"],"scopus_import":1,"publist_id":"7021","pubrep_id":"895","oa_version":"Published Version","author":[{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","full_name":"Edelsbrunner, Herbert","orcid":"0000-0002-9823-6833","last_name":"Edelsbrunner"},{"last_name":"Wagner","id":"379CA8B8-F248-11E8-B48F-1D18A9856A87","full_name":"Wagner, Hubert","first_name":"Hubert"}],"date_published":"2017-06-01T00:00:00Z","intvolume":"        77","date_updated":"2021-01-12T08:09:26Z","oa":1,"citation":{"mla":"Edelsbrunner, Herbert, and Hubert Wagner. <i>Topological Data Analysis with Bregman Divergences</i>. Vol. 77, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017, pp. 391–3916, doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.39\">10.4230/LIPIcs.SoCG.2017.39</a>.","apa":"Edelsbrunner, H., &#38; Wagner, H. (2017). Topological data analysis with Bregman divergences (Vol. 77, pp. 391–3916). Presented at the Symposium on Computational Geometry, SoCG, Brisbane, Australia: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.39\">https://doi.org/10.4230/LIPIcs.SoCG.2017.39</a>","short":"H. Edelsbrunner, H. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017, pp. 391–3916.","ista":"Edelsbrunner H, Wagner H. 2017. Topological data analysis with Bregman divergences. Symposium on Computational Geometry, SoCG, LIPIcs, vol. 77, 391–3916.","chicago":"Edelsbrunner, Herbert, and Hubert Wagner. “Topological Data Analysis with Bregman Divergences,” 77:391–3916. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017. <a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.39\">https://doi.org/10.4230/LIPIcs.SoCG.2017.39</a>.","ama":"Edelsbrunner H, Wagner H. Topological data analysis with Bregman divergences. In: Vol 77. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2017:391-3916. doi:<a href=\"https://doi.org/10.4230/LIPIcs.SoCG.2017.39\">10.4230/LIPIcs.SoCG.2017.39</a>","ieee":"H. Edelsbrunner and H. Wagner, “Topological data analysis with Bregman divergences,” presented at the Symposium on Computational Geometry, SoCG, Brisbane, Australia, 2017, vol. 77, pp. 391–3916."},"_id":"688","title":"Topological data analysis with Bregman divergences","publication_status":"published","file":[{"access_level":"open_access","file_id":"4856","content_type":"application/pdf","file_name":"IST-2017-895-v1+1_LIPIcs-SoCG-2017-39.pdf","creator":"system","file_size":990546,"checksum":"067ab0cb3f962bae6c3af6bf0094e0f3","date_updated":"2020-07-14T12:47:42Z","date_created":"2018-12-12T10:11:03Z","relation":"main_file"}],"doi":"10.4230/LIPIcs.SoCG.2017.39","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87"},{"oa_version":"None","publist_id":"7019","abstract":[{"lang":"eng","text":"Rett syndrome modeling in monkey mirrors the human disorder."}],"status":"public","scopus_import":1,"type":"journal_article","day":"07","issue":"393","date_updated":"2021-01-12T08:09:29Z","date_created":"2018-12-11T11:47:56Z","intvolume":"         9","date_published":"2017-06-07T00:00:00Z","author":[{"orcid":"0000-0002-7673-7178","last_name":"Novarino","full_name":"Novarino, Gaia","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87"}],"quality_controlled":"1","publisher":"American Association for the Advancement of Science","language":[{"iso":"eng"}],"doi":"10.1126/scitranslmed.aan8196","year":"2017","publication_status":"published","publication_identifier":{"issn":["19466234"]},"volume":9,"_id":"689","publication":"Science Translational Medicine","title":"Rett syndrome modeling goes simian","article_number":"eaan8196","citation":{"chicago":"Novarino, Gaia. “Rett Syndrome Modeling Goes Simian.” <i>Science Translational Medicine</i>. American Association for the Advancement of Science, 2017. <a href=\"https://doi.org/10.1126/scitranslmed.aan8196\">https://doi.org/10.1126/scitranslmed.aan8196</a>.","ieee":"G. Novarino, “Rett syndrome modeling goes simian,” <i>Science Translational Medicine</i>, vol. 9, no. 393. American Association for the Advancement of Science, 2017.","ama":"Novarino G. Rett syndrome modeling goes simian. <i>Science Translational Medicine</i>. 2017;9(393). doi:<a href=\"https://doi.org/10.1126/scitranslmed.aan8196\">10.1126/scitranslmed.aan8196</a>","ista":"Novarino G. 2017. Rett syndrome modeling goes simian. Science Translational Medicine. 9(393), eaan8196.","short":"G. Novarino, Science Translational Medicine 9 (2017).","mla":"Novarino, Gaia. “Rett Syndrome Modeling Goes Simian.” <i>Science Translational Medicine</i>, vol. 9, no. 393, eaan8196, American Association for the Advancement of Science, 2017, doi:<a href=\"https://doi.org/10.1126/scitranslmed.aan8196\">10.1126/scitranslmed.aan8196</a>.","apa":"Novarino, G. (2017). Rett syndrome modeling goes simian. <i>Science Translational Medicine</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/scitranslmed.aan8196\">https://doi.org/10.1126/scitranslmed.aan8196</a>"},"month":"06","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"GaNo"}]},{"external_id":{"arxiv":["1612.08185"],"isi":["000683309501102"]},"quality_controlled":"1","publisher":"JMLR","date_created":"2018-12-11T11:49:37Z","day":"01","type":"conference","status":"public","abstract":[{"lang":"eng","text":"We study probabilistic models of natural images and extend the autoregressive family of PixelCNN models by incorporating latent variables. Subsequently, we describe two new generative image models that exploit different image transformations as latent variables: a quantized grayscale view of the image or a multi-resolution image pyramid. The proposed models tackle two known shortcomings of existing PixelCNN models: 1) their tendency to focus on low-level image details, while largely ignoring high-level image information, such as object shapes, and 2) their computationally costly procedure for image sampling. We experimentally demonstrate benefits of our LatentPixelCNN models, in particular showing that they produce much more realistically looking image samples than previous state-of-the-art probabilistic models. "}],"has_accepted_license":"1","department":[{"_id":"ChLa"}],"page":"1905 - 1914","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1612.08185"}],"month":"08","conference":{"end_date":"2017-08-11","location":"Sydney, Australia","start_date":"2017-08-06","name":"ICML: International Conference on Machine Learning"},"isi":1,"publication_identifier":{"isbn":["978-151085514-4"]},"project":[{"_id":"2532554C-B435-11E9-9278-68D0E5697425","grant_number":"308036","call_identifier":"FP7","name":"Lifelong Learning of Visual Scene Understanding"}],"volume":70,"language":[{"iso":"eng"}],"year":"2017","author":[{"last_name":"Kolesnikov","first_name":"Alexander","full_name":"Kolesnikov, Alexander","id":"2D157DB6-F248-11E8-B48F-1D18A9856A87"},{"id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887","last_name":"Lampert"}],"date_published":"2017-08-01T00:00:00Z","date_updated":"2023-09-22T09:50:41Z","intvolume":"        70","ec_funded":1,"scopus_import":"1","oa_version":"Submitted Version","publist_id":"6398","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa":1,"acknowledgement":"We thank Tim Salimans for spotting a mistake in our preliminary arXiv manuscript. This work was funded by the European Research Council under the European Unions Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no 308036.","citation":{"ama":"Kolesnikov A, Lampert C. PixelCNN models with auxiliary variables for natural image modeling. In: <i>34th International Conference on Machine Learning</i>. Vol 70. JMLR; 2017:1905-1914.","ieee":"A. Kolesnikov and C. Lampert, “PixelCNN models with auxiliary variables for natural image modeling,” in <i>34th International Conference on Machine Learning</i>, Sydney, Australia, 2017, vol. 70, pp. 1905–1914.","chicago":"Kolesnikov, Alexander, and Christoph Lampert. “PixelCNN Models with Auxiliary Variables for Natural Image Modeling.” In <i>34th International Conference on Machine Learning</i>, 70:1905–14. JMLR, 2017.","mla":"Kolesnikov, Alexander, and Christoph Lampert. “PixelCNN Models with Auxiliary Variables for Natural Image Modeling.” <i>34th International Conference on Machine Learning</i>, vol. 70, JMLR, 2017, pp. 1905–14.","apa":"Kolesnikov, A., &#38; Lampert, C. (2017). PixelCNN models with auxiliary variables for natural image modeling. In <i>34th International Conference on Machine Learning</i> (Vol. 70, pp. 1905–1914). Sydney, Australia: JMLR.","short":"A. Kolesnikov, C. Lampert, in:, 34th International Conference on Machine Learning, JMLR, 2017, pp. 1905–1914.","ista":"Kolesnikov A, Lampert C. 2017. PixelCNN models with auxiliary variables for natural image modeling. 34th International Conference on Machine Learning. ICML: International Conference on Machine Learning vol. 70, 1905–1914."},"arxiv":1,"_id":"1000","article_processing_charge":"No","publication":"34th International Conference on Machine Learning","title":"PixelCNN models with auxiliary variables for natural image modeling","publication_status":"published"},{"intvolume":"        36","ec_funded":1,"date_updated":"2023-09-22T09:49:58Z","issue":"4","author":[{"full_name":"Guseinov, Ruslan","first_name":"Ruslan","id":"3AB45EE2-F248-11E8-B48F-1D18A9856A87","last_name":"Guseinov","orcid":"0000-0001-9819-5077"},{"full_name":"Miguel, Eder","first_name":"Eder","last_name":"Miguel"},{"id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bickel, Bernd","first_name":"Bernd","last_name":"Bickel","orcid":"0000-0001-6511-9385"}],"date_published":"2017-01-01T00:00:00Z","publist_id":"6397","pubrep_id":"1053","oa_version":"Submitted Version","alternative_title":["ACM Transactions on Graphics"],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","title":"CurveUps: Shaping objects from flat plates with tension-actuated curvature","_id":"1001","article_processing_charge":"No","file":[{"access_level":"open_access","file_id":"4811","content_type":"application/pdf","file_name":"IST-2018-1053-v1+1_CurveUp.pdf","creator":"system","file_size":36159696,"date_updated":"2018-12-12T10:10:24Z","date_created":"2018-12-12T10:10:24Z","relation":"main_file"}],"publication_status":"published","doi":"10.1145/3072959.3073709","oa":1,"article_number":"64","citation":{"ama":"Guseinov R, Miguel E, Bickel B. CurveUps: Shaping objects from flat plates with tension-actuated curvature. In: Vol 36. ACM; 2017. doi:<a href=\"https://doi.org/10.1145/3072959.3073709\">10.1145/3072959.3073709</a>","ieee":"R. Guseinov, E. Miguel, and B. Bickel, “CurveUps: Shaping objects from flat plates with tension-actuated curvature,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States, 2017, vol. 36, no. 4.","chicago":"Guseinov, Ruslan, Eder Miguel, and Bernd Bickel. “CurveUps: Shaping Objects from Flat Plates with Tension-Actuated Curvature,” Vol. 36. ACM, 2017. <a href=\"https://doi.org/10.1145/3072959.3073709\">https://doi.org/10.1145/3072959.3073709</a>.","apa":"Guseinov, R., Miguel, E., &#38; Bickel, B. (2017). CurveUps: Shaping objects from flat plates with tension-actuated curvature (Vol. 36). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States: ACM. <a href=\"https://doi.org/10.1145/3072959.3073709\">https://doi.org/10.1145/3072959.3073709</a>","mla":"Guseinov, Ruslan, et al. <i>CurveUps: Shaping Objects from Flat Plates with Tension-Actuated Curvature</i>. Vol. 36, no. 4, 64, ACM, 2017, doi:<a href=\"https://doi.org/10.1145/3072959.3073709\">10.1145/3072959.3073709</a>.","short":"R. Guseinov, E. Miguel, B. Bickel, in:, ACM, 2017.","ista":"Guseinov R, Miguel E, Bickel B. 2017. CurveUps: Shaping objects from flat plates with tension-actuated curvature. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, ACM Transactions on Graphics, vol. 36, 64."},"date_created":"2018-12-11T11:49:38Z","quality_controlled":"1","publisher":"ACM","external_id":{"isi":["000406432100032"]},"abstract":[{"lang":"eng","text":"We present a computational approach for designing CurveUps, curvy shells that form from an initially flat state. They consist of small rigid tiles that are tightly held together by two pre-stretched elastic sheets attached to them. Our method allows the realization of smooth, doubly curved surfaces that can be fabricated as a flat piece. Once released, the restoring forces of the pre-stretched sheets support the object to take shape in 3D. CurveUps are structurally stable in their target configuration. The design process starts with a target surface. Our method generates a tile layout in 2D and optimizes the distribution, shape, and attachment areas of the tiles to obtain a configuration that is fabricable and in which the curved up state closely matches the target. Our approach is based on an efficient approximate model and a local optimization strategy for an otherwise intractable nonlinear optimization problem. We demonstrate the effectiveness of our approach for a wide range of shapes, all realized as physical prototypes."}],"ddc":["003","004"],"has_accepted_license":"1","day":"01","file_date_updated":"2018-12-12T10:10:24Z","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"8366"}]},"status":"public","type":"conference","month":"01","department":[{"_id":"BeBi"}],"volume":36,"project":[{"grant_number":"645599","_id":"25082902-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Soft-bodied intelligence for Manipulation"},{"_id":"24F9549A-B435-11E9-9278-68D0E5697425","grant_number":"715767","call_identifier":"H2020","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling"}],"year":"2017","language":[{"iso":"eng"}],"conference":{"end_date":"2017-08-25","location":"Los Angeles, CA, United States","name":"SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques","start_date":"2017-08-19"},"isi":1}]