[{"main_file_link":[{"url":"https://doi.org/10.1007/s00208-023-02680-0","open_access":"1"}],"article_type":"original","project":[{"name":"Curvature-dimension in noncommutative analysis","grant_number":"M03337","_id":"eb958bca-77a9-11ec-83b8-c565cb50d8d6"}],"status":"public","date_created":"2023-07-30T22:01:03Z","year":"2023","acknowledgement":"The research of A.V. is supported by NSF DMS-1900286, DMS-2154402 and by Hausdorff Center for Mathematics. H.Z. is supported by the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337. This work is partially supported by NSF DMS-1929284 while both authors were in residence at the Institute for Computational and Experimental Research in Mathematics in Providence, RI, during the Harmonic Analysis and Convexity program.","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-12-13T11:36:20Z","title":"Noncommutative Bohnenblust–Hille inequalities","article_processing_charge":"No","abstract":[{"text":"Bohnenblust–Hille inequalities for Boolean cubes have been proven with dimension-free constants that grow subexponentially in the degree (Defant et al. in Math Ann 374(1):653–680, 2019). Such inequalities have found great applications in learning low-degree Boolean functions (Eskenazis and Ivanisvili in Proceedings of the 54th annual ACM SIGACT symposium on theory of computing, pp 203–207, 2022). Motivated by learning quantum observables, a qubit analogue of Bohnenblust–Hille inequality for Boolean cubes was recently conjectured in Rouzé et al. (Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum Boolean functions, 2022. arXiv preprint arXiv:2209.07279). The conjecture was resolved in Huang et al. (Learning to predict arbitrary quantum processes, 2022. arXiv preprint arXiv:2210.14894). In this paper, we give a new proof of these Bohnenblust–Hille inequalities for qubit system with constants that are dimension-free and of exponential growth in the degree. As a consequence, we obtain a junta theorem for low-degree polynomials. Using similar ideas, we also study learning problems of low degree quantum observables and Bohr’s radius phenomenon on quantum Boolean cubes.","lang":"eng"}],"citation":{"short":"A. Volberg, H. Zhang, Mathematische Annalen (2023).","apa":"Volberg, A., &#38; Zhang, H. (2023). Noncommutative Bohnenblust–Hille inequalities. <i>Mathematische Annalen</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00208-023-02680-0\">https://doi.org/10.1007/s00208-023-02680-0</a>","chicago":"Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.” <i>Mathematische Annalen</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00208-023-02680-0\">https://doi.org/10.1007/s00208-023-02680-0</a>.","ama":"Volberg A, Zhang H. Noncommutative Bohnenblust–Hille inequalities. <i>Mathematische Annalen</i>. 2023. doi:<a href=\"https://doi.org/10.1007/s00208-023-02680-0\">10.1007/s00208-023-02680-0</a>","ista":"Volberg A, Zhang H. 2023. Noncommutative Bohnenblust–Hille inequalities. Mathematische Annalen.","mla":"Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.” <i>Mathematische Annalen</i>, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s00208-023-02680-0\">10.1007/s00208-023-02680-0</a>.","ieee":"A. Volberg and H. Zhang, “Noncommutative Bohnenblust–Hille inequalities,” <i>Mathematische Annalen</i>. Springer Nature, 2023."},"isi":1,"day":"24","scopus_import":"1","oa_version":"Published Version","author":[{"last_name":"Volberg","full_name":"Volberg, Alexander","first_name":"Alexander"},{"full_name":"Zhang, Haonan","last_name":"Zhang","first_name":"Haonan","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425"}],"department":[{"_id":"JaMa"}],"type":"journal_article","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1432-1807"],"issn":["0025-5831"]},"oa":1,"publication":"Mathematische Annalen","quality_controlled":"1","publication_status":"epub_ahead","month":"07","arxiv":1,"external_id":{"arxiv":["2210.14468"],"isi":["001035665500001"]},"date_published":"2023-07-24T00:00:00Z","doi":"10.1007/s00208-023-02680-0","_id":"13318"},{"month":"10","arxiv":1,"external_id":{"arxiv":["2303.15949"],"isi":["001033655400002"]},"doi":"10.1007/s00220-023-04795-6","date_published":"2023-10-01T00:00:00Z","_id":"13319","intvolume":"       403","publication":"Communications in Mathematical Physics","oa":1,"quality_controlled":"1","publication_status":"published","type":"journal_article","publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"language":[{"iso":"eng"}],"file_date_updated":"2024-01-30T12:15:11Z","department":[{"_id":"JaMa"}],"file":[{"file_id":"14905","relation":"main_file","date_created":"2024-01-30T12:15:11Z","file_size":481209,"creator":"dernst","date_updated":"2024-01-30T12:15:11Z","file_name":"2023_CommMathPhysics_Vernooij.pdf","checksum":"cca204e81891270216a0c84eb8bcd398","access_level":"open_access","content_type":"application/pdf","success":1}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"oa_version":"Published Version","author":[{"first_name":"Matthijs","last_name":"Vernooij","full_name":"Vernooij, Matthijs"},{"id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","first_name":"Melchior","last_name":"Wirth","orcid":"0000-0002-0519-4241","full_name":"Wirth, Melchior"}],"scopus_import":"1","has_accepted_license":"1","citation":{"apa":"Vernooij, M., &#38; Wirth, M. (2023). Derivations and KMS-symmetric quantum Markov semigroups. <i>Communications in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00220-023-04795-6\">https://doi.org/10.1007/s00220-023-04795-6</a>","ama":"Vernooij M, Wirth M. Derivations and KMS-symmetric quantum Markov semigroups. <i>Communications in Mathematical Physics</i>. 2023;403:381-416. doi:<a href=\"https://doi.org/10.1007/s00220-023-04795-6\">10.1007/s00220-023-04795-6</a>","chicago":"Vernooij, Matthijs, and Melchior Wirth. “Derivations and KMS-Symmetric Quantum Markov Semigroups.” <i>Communications in Mathematical Physics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00220-023-04795-6\">https://doi.org/10.1007/s00220-023-04795-6</a>.","ista":"Vernooij M, Wirth M. 2023. Derivations and KMS-symmetric quantum Markov semigroups. Communications in Mathematical Physics. 403, 381–416.","short":"M. Vernooij, M. Wirth, Communications in Mathematical Physics 403 (2023) 381–416.","ieee":"M. Vernooij and M. Wirth, “Derivations and KMS-symmetric quantum Markov semigroups,” <i>Communications in Mathematical Physics</i>, vol. 403. Springer Nature, pp. 381–416, 2023.","mla":"Vernooij, Matthijs, and Melchior Wirth. “Derivations and KMS-Symmetric Quantum Markov Semigroups.” <i>Communications in Mathematical Physics</i>, vol. 403, Springer Nature, 2023, pp. 381–416, doi:<a href=\"https://doi.org/10.1007/s00220-023-04795-6\">10.1007/s00220-023-04795-6</a>."},"isi":1,"day":"01","abstract":[{"lang":"eng","text":"We prove that the generator of the L2 implementation of a KMS-symmetric quantum Markov semigroup can be expressed as the square of a derivation with values in a Hilbert bimodule, extending earlier results by Cipriani and Sauvageot for tracially symmetric semigroups and the second-named author for GNS-symmetric semigroups. This result hinges on the introduction of a new completely positive map on the algebra of bounded operators on the GNS Hilbert space. This transformation maps symmetric Markov operators to symmetric Markov operators and is essential to obtain the required inner product on the Hilbert bimodule."}],"license":"https://creativecommons.org/licenses/by/4.0/","title":"Derivations and KMS-symmetric quantum Markov semigroups","article_processing_charge":"Yes (via OA deal)","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-30T12:16:32Z","ddc":["510"],"date_created":"2023-07-30T22:01:03Z","year":"2023","volume":403,"acknowledgement":"The authors are grateful to Martijn Caspers for helpful comments on a preliminary version of this manuscript. M. V. was supported by the NWO Vidi grant VI.Vidi.192.018 ‘Non-commutative harmonic analysis and rigidity of operator algebras’. M. W. was funded by the Austrian Science Fund (FWF) under the Esprit Programme [ESP 156]. For the purpose of Open Access, the authors have applied a CC BY public copyright licence to any Author Accepted Manuscript (AAM) version arising from this submission. Open access funding provided by Austrian Science Fund (FWF).","article_type":"original","status":"public","project":[{"name":"Gradient flow techniques for quantum Markov semigroups","_id":"34c6ea2d-11ca-11ed-8bc3-c04f3c502833","grant_number":"ESP156_N"}],"page":"381-416"},{"quality_controlled":"1","publication_status":"published","oa":1,"publication":"2023 IEEE Information Theory Workshop","doi":"10.1109/ITW55543.2023.10160238","date_published":"2023-05-01T00:00:00Z","_id":"13321","month":"05","external_id":{"isi":["001031733100053"],"arxiv":["2212.01572"]},"arxiv":1,"conference":{"end_date":"2023-04-28","location":"Saint-Malo, France","start_date":"2023-04-23","name":"ITW: Information Theory Workshop"},"language":[{"iso":"eng"}],"publication_identifier":{"isbn":["9798350301496"],"eissn":["2475-4218"]},"type":"conference","department":[{"_id":"MaMo"}],"oa_version":"Preprint","author":[{"first_name":"Yizhou","full_name":"Xu, Yizhou","last_name":"Xu"},{"full_name":"Hou, Tian Qi","last_name":"Hou","first_name":"Tian Qi"},{"full_name":"Liang, Shan Suo","last_name":"Liang","first_name":"Shan Suo"},{"orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco","last_name":"Mondelli","first_name":"Marco","id":"27EB676C-8706-11E9-9510-7717E6697425"}],"scopus_import":"1","abstract":[{"text":"We consider the problem of reconstructing the signal and the hidden variables from observations coming from a multi-layer network with rotationally invariant weight matrices. The multi-layer structure models inference from deep generative priors, and the rotational invariance imposed on the weights generalizes the i.i.d. Gaussian assumption by allowing for a complex correlation structure, which is typical in applications. In this work, we present a new class of approximate message passing (AMP) algorithms and give a state evolution recursion which precisely characterizes their performance in the large system limit. In contrast with the existing multi-layer VAMP (ML-VAMP) approach, our proposed AMP – dubbed multilayer rotationally invariant generalized AMP (ML-RI-GAMP) – provides a natural generalization beyond Gaussian designs, in the sense that it recovers the existing Gaussian AMP as a special case. Furthermore, ML-RI-GAMP exhibits a significantly lower complexity than ML-VAMP, as the computationally intensive singular value decomposition is replaced by an estimation of the moments of the design matrices. Finally, our numerical results show that this complexity gain comes at little to no cost in the performance of the algorithm.","lang":"eng"}],"isi":1,"day":"01","citation":{"ieee":"Y. Xu, T. Q. Hou, S. S. Liang, and M. Mondelli, “Approximate message passing for multi-layer estimation in rotationally invariant models,” in <i>2023 IEEE Information Theory Workshop</i>, Saint-Malo, France, 2023, pp. 294–298.","mla":"Xu, Yizhou, et al. “Approximate Message Passing for Multi-Layer Estimation in Rotationally Invariant Models.” <i>2023 IEEE Information Theory Workshop</i>, Institute of Electrical and Electronics Engineers, 2023, pp. 294–98, doi:<a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">10.1109/ITW55543.2023.10160238</a>.","ista":"Xu Y, Hou TQ, Liang SS, Mondelli M. 2023. Approximate message passing for multi-layer estimation in rotationally invariant models. 2023 IEEE Information Theory Workshop. ITW: Information Theory Workshop, 294–298.","ama":"Xu Y, Hou TQ, Liang SS, Mondelli M. Approximate message passing for multi-layer estimation in rotationally invariant models. In: <i>2023 IEEE Information Theory Workshop</i>. Institute of Electrical and Electronics Engineers; 2023:294-298. doi:<a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">10.1109/ITW55543.2023.10160238</a>","chicago":"Xu, Yizhou, Tian Qi Hou, Shan Suo Liang, and Marco Mondelli. “Approximate Message Passing for Multi-Layer Estimation in Rotationally Invariant Models.” In <i>2023 IEEE Information Theory Workshop</i>, 294–98. Institute of Electrical and Electronics Engineers, 2023. <a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">https://doi.org/10.1109/ITW55543.2023.10160238</a>.","apa":"Xu, Y., Hou, T. Q., Liang, S. S., &#38; Mondelli, M. (2023). Approximate message passing for multi-layer estimation in rotationally invariant models. In <i>2023 IEEE Information Theory Workshop</i> (pp. 294–298). Saint-Malo, France: Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/ITW55543.2023.10160238\">https://doi.org/10.1109/ITW55543.2023.10160238</a>","short":"Y. Xu, T.Q. Hou, S.S. Liang, M. Mondelli, in:, 2023 IEEE Information Theory Workshop, Institute of Electrical and Electronics Engineers, 2023, pp. 294–298."},"date_updated":"2024-09-10T13:03:19Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Institute of Electrical and Electronics Engineers","title":"Approximate message passing for multi-layer estimation in rotationally invariant models","article_processing_charge":"No","page":"294-298","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2212.01572"}],"status":"public","project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"acknowledgement":"Marco Mondelli was partially supported by the 2019 Lopez-Loreta prize.","date_created":"2023-07-30T22:01:04Z","year":"2023"},{"month":"07","date_published":"2023-07-31T00:00:00Z","doi":"10.15479/at:ista:13331","_id":"13331","oa":1,"publication_status":"published","alternative_title":["ISTA Master's Thesis"],"degree_awarded":"MS","type":"dissertation","file_date_updated":"2023-08-03T15:28:55Z","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2791-4585"]},"department":[{"_id":"GradSch"},{"_id":"UlWa"}],"file":[{"file_name":"Exterior Algebra and Combinatorics.zip","date_updated":"2023-07-31T10:16:32Z","content_type":"application/x-zip-compressed","checksum":"96ee518d796d02af71395622c45de03c","access_level":"closed","file_id":"13333","date_created":"2023-07-31T10:16:32Z","relation":"source_file","creator":"skoese","file_size":28684},{"file_size":4953418,"creator":"skoese","date_created":"2023-08-03T15:28:55Z","file_id":"13480","relation":"main_file","success":1,"content_type":"application/pdf","access_level":"open_access","checksum":"f610f4713f88bc477de576aaa46b114e","file_name":"thesis-pdfa.pdf","date_updated":"2023-08-03T15:28:55Z"}],"oa_version":"Published Version","author":[{"first_name":"Seyda","id":"8ba3170d-dc85-11ea-9058-c4251c96a6eb","full_name":"Köse, Seyda","last_name":"Köse"}],"related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"12680"}]},"has_accepted_license":"1","citation":{"ieee":"S. Köse, “Exterior algebra and combinatorics,” Institute of Science and Technology Austria, 2023.","mla":"Köse, Seyda. <i>Exterior Algebra and Combinatorics</i>. Institute of Science and Technology Austria, 2023, doi:<a href=\"https://doi.org/10.15479/at:ista:13331\">10.15479/at:ista:13331</a>.","apa":"Köse, S. (2023). <i>Exterior algebra and combinatorics</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:13331\">https://doi.org/10.15479/at:ista:13331</a>","ista":"Köse S. 2023. Exterior algebra and combinatorics. Institute of Science and Technology Austria.","chicago":"Köse, Seyda. “Exterior Algebra and Combinatorics.” Institute of Science and Technology Austria, 2023. <a href=\"https://doi.org/10.15479/at:ista:13331\">https://doi.org/10.15479/at:ista:13331</a>.","ama":"Köse S. Exterior algebra and combinatorics. 2023. doi:<a href=\"https://doi.org/10.15479/at:ista:13331\">10.15479/at:ista:13331</a>","short":"S. Köse, Exterior Algebra and Combinatorics, Institute of Science and Technology Austria, 2023."},"day":"31","abstract":[{"text":"The extension of extremal combinatorics to the setting of exterior algebra is a work\r\nin progress that gained attention recently. In this thesis, we study the combinatorial structure of exterior algebra by introducing a dictionary that translates the notions from the set systems into the framework of exterior algebra. We show both generalizations of celebrated Erdös--Ko--Rado theorem and Hilton--Milner theorem to the setting of exterior algebra in the simplest non-trivial case of two-forms.\r\n","lang":"eng"}],"title":"Exterior algebra and combinatorics","article_processing_charge":"No","supervisor":[{"last_name":"Wagner","full_name":"Wagner, Uli","orcid":"0000-0002-1494-0568","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","first_name":"Uli"}],"publisher":"Institute of Science and Technology Austria","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_updated":"2023-10-04T11:54:56Z","ddc":["510","516"],"date_created":"2023-07-31T10:20:55Z","year":"2023","status":"public","page":"26"},{"oa":1,"month":"06","doi":"10.5281/ZENODO.8059564","date_published":"2023-06-20T00:00:00Z","related_material":{"record":[{"status":"public","id":"13258","relation":"used_in_publication"}]},"_id":"13336","type":"research_data_reference","citation":{"ieee":"M. Kleshnina, “kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games.” Zenodo, 2023.","mla":"Kleshnina, Maria. <i>Kleshnina/Stochgames_info: The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8059564\">10.5281/ZENODO.8059564</a>.","apa":"Kleshnina, M. (2023). kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8059564\">https://doi.org/10.5281/ZENODO.8059564</a>","ama":"Kleshnina M. kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8059564\">10.5281/ZENODO.8059564</a>","chicago":"Kleshnina, Maria. “Kleshnina/Stochgames_info: The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8059564\">https://doi.org/10.5281/ZENODO.8059564</a>.","ista":"Kleshnina M. 2023. kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8059564\">10.5281/ZENODO.8059564</a>.","short":"M. Kleshnina, (2023)."},"day":"20","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-07-14T09:09:53Z","publisher":"Zenodo","ddc":["000"],"department":[{"_id":"KrCh"}],"title":"kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.8059564"}],"author":[{"last_name":"Kleshnina","full_name":"Kleshnina, Maria","id":"4E21749C-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"}],"oa_version":"Published Version","status":"public","date_created":"2023-07-31T11:30:46Z","year":"2023"},{"department":[{"_id":"RaKl"}],"oa_version":"Preprint","author":[{"full_name":"Gemen, Julius","last_name":"Gemen","first_name":"Julius"},{"first_name":"Jonathan R.","last_name":"Church","full_name":"Church, Jonathan R."},{"first_name":"Tero-Petri","full_name":"Ruoko, Tero-Petri","last_name":"Ruoko"},{"first_name":"Nikita","last_name":"Durandin","full_name":"Durandin, Nikita"},{"full_name":"Białek, Michał J.","last_name":"Białek","first_name":"Michał J."},{"first_name":"Maren","full_name":"Weissenfels, Maren","last_name":"Weissenfels"},{"full_name":"Feller, Moran","last_name":"Feller","first_name":"Moran"},{"full_name":"Kazes, Miri","last_name":"Kazes","first_name":"Miri"},{"first_name":"Veniamin A.","full_name":"Borin, Veniamin A.","last_name":"Borin"},{"first_name":"Magdalena","last_name":"Odaybat","full_name":"Odaybat, Magdalena"},{"first_name":"Rishir","full_name":"Kalepu, Rishir","last_name":"Kalepu"},{"full_name":"Diskin-Posner, Yael","last_name":"Diskin-Posner","first_name":"Yael"},{"last_name":"Oron","full_name":"Oron, Dan","first_name":"Dan"},{"full_name":"Fuchter, Matthew J.","last_name":"Fuchter","first_name":"Matthew J."},{"last_name":"Priimagi","full_name":"Priimagi, Arri","first_name":"Arri"},{"full_name":"Schapiro, Igor","last_name":"Schapiro","first_name":"Igor"},{"full_name":"Klajn, Rafal","last_name":"Klajn","first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"month":"09","date_published":"2023-09-22T00:00:00Z","doi":"10.1126/science.adh9059","_id":"13340","intvolume":"       381","oa":1,"publication":"Science","quality_controlled":"1","publication_status":"published","type":"journal_article","issue":"6664","publication_identifier":{"eissn":["1095-9203"]},"language":[{"iso":"eng"}],"title":"Disequilibrating azoarenes by visible-light sensitization under confinement","article_processing_charge":"No","date_updated":"2023-10-03T08:11:26Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Association for the Advancement of Science","date_created":"2023-08-01T08:26:15Z","year":"2023","volume":381,"acknowledgement":"We acknowledge funding from the European Union’s Horizon 2020 Research and Innovation Program [European Research Council grants 820008 (Ra.K.) and 101045223 (A.P.) and Marie Skłodowska-Curie grants 812868 (J.G.) and 101022777 (T.-P.R.)], the Academy of Finland [Center of Excellence Programme LIBER grant 346107 (A.P.), Flagship Programme PREIN grant 320165 (A.P.), and Postdoctoral Researcher grant 340103 (T.-P.R.)], Zuckerman STEM Leadership Program Fellowship (J.R.C.), President’s PhD Scholarship (M.O.), and the EPSRC [Established Career Fellowship grant EP/R00188X/1 (M.J.F.)].","article_type":"original","main_file_link":[{"url":"https://doi.org/10.26434/chemrxiv-2023-gq2h0","open_access":"1"}],"status":"public","page":"1357-1363","scopus_import":"1","citation":{"ieee":"J. Gemen <i>et al.</i>, “Disequilibrating azoarenes by visible-light sensitization under confinement,” <i>Science</i>, vol. 381, no. 6664. American Association for the Advancement of Science, pp. 1357–1363, 2023.","mla":"Gemen, Julius, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” <i>Science</i>, vol. 381, no. 6664, American Association for the Advancement of Science, 2023, pp. 1357–63, doi:<a href=\"https://doi.org/10.1126/science.adh9059\">10.1126/science.adh9059</a>.","ista":"Gemen J, Church JR, Ruoko T-P, Durandin N, Białek MJ, Weissenfels M, Feller M, Kazes M, Borin VA, Odaybat M, Kalepu R, Diskin-Posner Y, Oron D, Fuchter MJ, Priimagi A, Schapiro I, Klajn R. 2023. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 381(6664), 1357–1363.","ama":"Gemen J, Church JR, Ruoko T-P, et al. Disequilibrating azoarenes by visible-light sensitization under confinement. <i>Science</i>. 2023;381(6664):1357-1363. doi:<a href=\"https://doi.org/10.1126/science.adh9059\">10.1126/science.adh9059</a>","chicago":"Gemen, Julius, Jonathan R. Church, Tero-Petri Ruoko, Nikita Durandin, Michał J. Białek, Maren Weissenfels, Moran Feller, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” <i>Science</i>. American Association for the Advancement of Science, 2023. <a href=\"https://doi.org/10.1126/science.adh9059\">https://doi.org/10.1126/science.adh9059</a>.","apa":"Gemen, J., Church, J. R., Ruoko, T.-P., Durandin, N., Białek, M. J., Weissenfels, M., … Klajn, R. (2023). Disequilibrating azoarenes by visible-light sensitization under confinement. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.adh9059\">https://doi.org/10.1126/science.adh9059</a>","short":"J. Gemen, J.R. Church, T.-P. Ruoko, N. Durandin, M.J. Białek, M. Weissenfels, M. Feller, M. Kazes, V.A. Borin, M. Odaybat, R. Kalepu, Y. Diskin-Posner, D. Oron, M.J. Fuchter, A. Priimagi, I. Schapiro, R. Klajn, Science 381 (2023) 1357–1363."},"day":"22","abstract":[{"text":"Photoisomerization of azobenzenes from their stable E isomer to the metastable Z state is the basis of numerous applications of these molecules. However, this reaction typically requires ultraviolet light, which limits applicability. In this study, we introduce disequilibration by sensitization under confinement (DESC), a supramolecular approach to induce the E-to-Z isomerization by using light of a desired color, including red. DESC relies on a combination of a macrocyclic host and a photosensitizer, which act together to selectively bind and sensitize E-azobenzenes for isomerization. The Z isomer lacks strong affinity for and is expelled from the host, which can then convert additional E-azobenzenes to the Z state. In this way, the host–photosensitizer complex converts photon energy into chemical energy in the form of out-of-equilibrium photostationary states, including ones that cannot be accessed through direct photoexcitation.","lang":"eng"}]},{"author":[{"full_name":"Kroll, Janina","last_name":"Kroll","first_name":"Janina"},{"last_name":"Hauschild","full_name":"Hauschild, Robert","orcid":"0000-0001-9843-3522","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"},{"full_name":"Kuznetcov, Arthur","last_name":"Kuznetcov","first_name":"Arthur"},{"first_name":"Kasia","last_name":"Stefanowski","full_name":"Stefanowski, Kasia"},{"first_name":"Monika D.","full_name":"Hermann, Monika D.","last_name":"Hermann"},{"last_name":"Merrin","orcid":"0000-0001-5145-4609","full_name":"Merrin, Jack","id":"4515C308-F248-11E8-B48F-1D18A9856A87","first_name":"Jack"},{"orcid":"0000-0001-7180-6050","full_name":"Shafeek, Lubuna B","last_name":"Shafeek","first_name":"Lubuna B","id":"3CD37A82-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Müller-Taubenberger, Annette","last_name":"Müller-Taubenberger","first_name":"Annette"},{"orcid":"0000-0003-2856-3369","full_name":"Renkawitz, Jörg","last_name":"Renkawitz","first_name":"Jörg","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87"}],"oa_version":"Published Version","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"department":[{"_id":"NanoFab"},{"_id":"Bio"}],"file":[{"access_level":"open_access","checksum":"6261d0041c7e8d284c39712c40079730","content_type":"application/pdf","success":1,"file_name":"2023_EmboJournal_Kroll.pdf","date_updated":"2023-11-27T08:45:56Z","file_id":"14611","date_created":"2023-11-27T08:45:56Z","relation":"main_file","file_size":4862497,"creator":"dernst"}],"type":"journal_article","publication_identifier":{"eissn":["1460-2075"],"issn":["0261-4189"]},"file_date_updated":"2023-11-27T08:45:56Z","language":[{"iso":"eng"}],"oa":1,"publication":"EMBO Journal","publication_status":"published","quality_controlled":"1","external_id":{"pmid":["37987147"]},"month":"11","_id":"13342","doi":"10.15252/embj.2023114557","date_published":"2023-11-21T00:00:00Z","status":"public","article_type":"original","year":"2023","date_created":"2023-08-01T08:59:06Z","acknowledgement":"We thank Christoph Mayr and Bingzhi Wang for initial experiments on amoeboid nucleokinesis, Ana-Maria Lennon-Duménil and Aline Yatim for bone marrow from MyoIIA-Flox*CD11c-Cre mice, Michael Sixt and Aglaja Kopf for EMTB-mCherry, EB3-mCherry, Lifeact-GFP, Lfc knockout, and Myh9-GFP expressing HoxB8 cells, Malte Benjamin Braun, Mauricio Ruiz, and Madeleine T. Schmitt for critical reading of the manuscript, and the Core Facility Bioimaging, the Core Facility Flow Cytometry, and the Animal Core Facility of the Biomedical Center (BMC) for excellent support. This study was supported by the Peter Hans Hofschneider Professorship of the foundation “Stiftung Experimentelle Biomedizin” (to JR), the LMU Institutional Strategy LMU-Excellent within the framework of the German Excellence Initiative (to JR), and the Deutsche Forschungsgemeinschaft (DFG; German Research Foundation; SFB914 project A12, to JR), and the CZI grant DAF2020-225401 (https://doi.org/10.37921/120055ratwvi) from the Chan Zuckerberg Initiative DAF (to RH; an advised fund of Silicon Valley Community Foundation (funder https://doi.org/10.13039/100014989)). Open Access funding enabled and organized by Projekt DEAL.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-11-27T08:47:45Z","publisher":"Embo Press","ddc":["570"],"article_processing_charge":"Yes (via OA deal)","pmid":1,"title":"Adaptive pathfinding by nucleokinesis during amoeboid migration","article_number":"e114557","abstract":[{"text":"Motile cells moving in multicellular organisms encounter microenvironments of locally heterogeneous mechanochemical composition. Individual compositional parameters like chemotactic signals, adhesiveness, and pore sizes are well known to be sensed by motile cells, providing individual guidance cues for cellular pathfinding. However, motile cells encounter diverse mechanochemical signals at the same time, raising the question of how cells respond to locally diverse and potentially competing signals on their migration routes. Here, we reveal that motile amoeboid cells require nuclear repositioning, termed nucleokinesis, for adaptive pathfinding in heterogeneous mechanochemical microenvironments. Using mammalian immune cells and the amoeba<jats:italic>Dictyostelium discoideum</jats:italic>, we discover that frequent, rapid and long-distance nucleokinesis is a basic component of amoeboid pathfinding, enabling cells to reorientate quickly between locally competing cues. Amoeboid nucleokinesis comprises a two-step cell polarity switch and is driven by myosin II-forces, sliding the nucleus from a ‘losing’ to the ‘winning’ leading edge to re-adjust the nuclear to the cellular path. Impaired nucleokinesis distorts fast path adaptions and causes cellular arrest in the microenvironment. Our findings establish that nucleokinesis is required for amoeboid cell navigation. Given that motile single-cell amoebae, many immune cells, and some cancer cells utilize an amoeboid migration strategy, these results suggest that amoeboid nucleokinesis underlies cellular navigation during unicellular biology, immunity, and disease.","lang":"eng"}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","citation":{"ieee":"J. Kroll <i>et al.</i>, “Adaptive pathfinding by nucleokinesis during amoeboid migration,” <i>EMBO Journal</i>. Embo Press, 2023.","mla":"Kroll, Janina, et al. “Adaptive Pathfinding by Nucleokinesis during Amoeboid Migration.” <i>EMBO Journal</i>, e114557, Embo Press, 2023, doi:<a href=\"https://doi.org/10.15252/embj.2023114557\">10.15252/embj.2023114557</a>.","ama":"Kroll J, Hauschild R, Kuznetcov A, et al. Adaptive pathfinding by nucleokinesis during amoeboid migration. <i>EMBO Journal</i>. 2023. doi:<a href=\"https://doi.org/10.15252/embj.2023114557\">10.15252/embj.2023114557</a>","chicago":"Kroll, Janina, Robert Hauschild, Arthur Kuznetcov, Kasia Stefanowski, Monika D. Hermann, Jack Merrin, Lubuna B Shafeek, Annette Müller-Taubenberger, and Jörg Renkawitz. “Adaptive Pathfinding by Nucleokinesis during Amoeboid Migration.” <i>EMBO Journal</i>. Embo Press, 2023. <a href=\"https://doi.org/10.15252/embj.2023114557\">https://doi.org/10.15252/embj.2023114557</a>.","ista":"Kroll J, Hauschild R, Kuznetcov A, Stefanowski K, Hermann MD, Merrin J, Shafeek LB, Müller-Taubenberger A, Renkawitz J. 2023. Adaptive pathfinding by nucleokinesis during amoeboid migration. EMBO Journal., e114557.","apa":"Kroll, J., Hauschild, R., Kuznetcov, A., Stefanowski, K., Hermann, M. D., Merrin, J., … Renkawitz, J. (2023). Adaptive pathfinding by nucleokinesis during amoeboid migration. <i>EMBO Journal</i>. Embo Press. <a href=\"https://doi.org/10.15252/embj.2023114557\">https://doi.org/10.15252/embj.2023114557</a>","short":"J. Kroll, R. Hauschild, A. Kuznetcov, K. Stefanowski, M.D. Hermann, J. Merrin, L.B. Shafeek, A. Müller-Taubenberger, J. Renkawitz, EMBO Journal (2023)."},"day":"21","scopus_import":"1","has_accepted_license":"1"},{"scopus_import":"1","day":"10","citation":{"ieee":"C. Lionello, C. Perego, A. Gardin, R. Klajn, and G. M. Pavan, “Supramolecular semiconductivity through emerging ionic gates in ion–nanoparticle superlattices,” <i>ACS Nano</i>, vol. 17, no. 1. American Chemical Society, pp. 275–287, 2023.","mla":"Lionello, Chiara, et al. “Supramolecular Semiconductivity through Emerging Ionic Gates in Ion–Nanoparticle Superlattices.” <i>ACS Nano</i>, vol. 17, no. 1, American Chemical Society, 2023, pp. 275–87, doi:<a href=\"https://doi.org/10.1021/acsnano.2c07558\">10.1021/acsnano.2c07558</a>.","ama":"Lionello C, Perego C, Gardin A, Klajn R, Pavan GM. Supramolecular semiconductivity through emerging ionic gates in ion–nanoparticle superlattices. <i>ACS Nano</i>. 2023;17(1):275-287. doi:<a href=\"https://doi.org/10.1021/acsnano.2c07558\">10.1021/acsnano.2c07558</a>","ista":"Lionello C, Perego C, Gardin A, Klajn R, Pavan GM. 2023. Supramolecular semiconductivity through emerging ionic gates in ion–nanoparticle superlattices. ACS Nano. 17(1), 275–287.","chicago":"Lionello, Chiara, Claudio Perego, Andrea Gardin, Rafal Klajn, and Giovanni M. Pavan. “Supramolecular Semiconductivity through Emerging Ionic Gates in Ion–Nanoparticle Superlattices.” <i>ACS Nano</i>. American Chemical Society, 2023. <a href=\"https://doi.org/10.1021/acsnano.2c07558\">https://doi.org/10.1021/acsnano.2c07558</a>.","apa":"Lionello, C., Perego, C., Gardin, A., Klajn, R., &#38; Pavan, G. M. (2023). Supramolecular semiconductivity through emerging ionic gates in ion–nanoparticle superlattices. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsnano.2c07558\">https://doi.org/10.1021/acsnano.2c07558</a>","short":"C. Lionello, C. Perego, A. Gardin, R. Klajn, G.M. Pavan, ACS Nano 17 (2023) 275–287."},"abstract":[{"text":"The self-assembly of nanoparticles driven by small molecules or ions may produce colloidal superlattices with features and properties reminiscent of those of metals or semiconductors. However, to what extent the properties of such supramolecular crystals actually resemble those of atomic materials often remains unclear. Here, we present coarse-grained molecular simulations explicitly demonstrating how a behavior evocative of that of semiconductors may emerge in a colloidal superlattice. As a case study, we focus on gold nanoparticles bearing positively charged groups that self-assemble into FCC crystals via mediation by citrate counterions. In silico ohmic experiments show how the dynamically diverse behavior of the ions in different superlattice domains allows the opening of conductive ionic gates above certain levels of applied electric fields. The observed binary conductive/nonconductive behavior is reminiscent of that of conventional semiconductors, while, at a supramolecular level, crossing the “band gap” requires a sufficient electrostatic stimulus to break the intermolecular interactions and make ions diffuse throughout the superlattice’s cavities.","lang":"eng"}],"article_processing_charge":"No","title":"Supramolecular semiconductivity through emerging ionic gates in ion–nanoparticle superlattices","publisher":"American Chemical Society","date_updated":"2023-08-02T06:51:15Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":17,"year":"2023","date_created":"2023-08-01T09:30:29Z","page":"275-287","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1021/acsnano.2c07558"}],"article_type":"original","_id":"13346","extern":"1","date_published":"2023-01-10T00:00:00Z","doi":"10.1021/acsnano.2c07558","month":"01","publication_status":"published","quality_controlled":"1","intvolume":"        17","oa":1,"publication":"ACS Nano","publication_identifier":{"issn":["1936-0851"],"eissn":["1936-086X"]},"language":[{"iso":"eng"}],"keyword":["General Physics and Astronomy","General Engineering","General Materials Science"],"issue":"1","type":"journal_article","oa_version":"Published Version","author":[{"full_name":"Lionello, Chiara","last_name":"Lionello","first_name":"Chiara"},{"last_name":"Perego","full_name":"Perego, Claudio","first_name":"Claudio"},{"full_name":"Gardin, Andrea","last_name":"Gardin","first_name":"Andrea"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","last_name":"Klajn","full_name":"Klajn, Rafal"},{"last_name":"Pavan","full_name":"Pavan, Giovanni M.","first_name":"Giovanni M."}]},{"oa_version":"Published Version","author":[{"first_name":"Jinhua","full_name":"Wang, Jinhua","last_name":"Wang"},{"first_name":"Tzuf Shay","last_name":"Peled","full_name":"Peled, Tzuf Shay"},{"last_name":"Klajn","full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal"}],"publication_status":"published","quality_controlled":"1","oa":1,"publication":"Journal of the American Chemical Society","intvolume":"       145","_id":"13354","date_published":"2023-02-09T00:00:00Z","doi":"10.1021/jacs.2c11973","extern":"1","external_id":{"pmid":["36757850"]},"month":"02","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"language":[{"iso":"eng"}],"keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"issue":"7","type":"journal_article","date_updated":"2023-08-02T10:44:22Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Chemical Society","article_processing_charge":"No","title":"Photocleavable anionic glues for light-responsive nanoparticle aggregates","pmid":1,"page":"4098-4108","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1021/jacs.2c11973"}],"article_type":"original","volume":145,"year":"2023","date_created":"2023-08-01T09:33:08Z","scopus_import":"1","abstract":[{"text":"Integrating light-sensitive molecules within nanoparticle (NP) assemblies is an attractive approach to fabricate new photoresponsive nanomaterials. Here, we describe the concept of photocleavable anionic glue (PAG): small trianions capable of mediating interactions between (and inducing the aggregation of) cationic NPs by means of electrostatic interactions. Exposure to light converts PAGs into dianionic products incapable of maintaining the NPs in an assembled state, resulting in light-triggered disassembly of NP aggregates. To demonstrate the proof-of-concept, we work with an organic PAG incorporating the UV-cleavable o-nitrobenzyl moiety and an inorganic PAG, the photosensitive trioxalatocobaltate(III) complex, which absorbs light across the entire visible spectrum. Both PAGs were used to prepare either amorphous NP assemblies or regular superlattices with a long-range NP order. These NP aggregates disassembled rapidly upon light exposure for a specific time, which could be tuned by the incident light wavelength or the amount of PAG used. Selective excitation of the inorganic PAG in a system combining the two PAGs results in a photodecomposition product that deactivates the organic PAG, enabling nontrivial disassembly profiles under a single type of external stimulus.","lang":"eng"}],"day":"09","citation":{"mla":"Wang, Jinhua, et al. “Photocleavable Anionic Glues for Light-Responsive Nanoparticle Aggregates.” <i>Journal of the American Chemical Society</i>, vol. 145, no. 7, American Chemical Society, 2023, pp. 4098–108, doi:<a href=\"https://doi.org/10.1021/jacs.2c11973\">10.1021/jacs.2c11973</a>.","ieee":"J. Wang, T. S. Peled, and R. Klajn, “Photocleavable anionic glues for light-responsive nanoparticle aggregates,” <i>Journal of the American Chemical Society</i>, vol. 145, no. 7. American Chemical Society, pp. 4098–4108, 2023.","short":"J. Wang, T.S. Peled, R. Klajn, Journal of the American Chemical Society 145 (2023) 4098–4108.","apa":"Wang, J., Peled, T. S., &#38; Klajn, R. (2023). Photocleavable anionic glues for light-responsive nanoparticle aggregates. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.2c11973\">https://doi.org/10.1021/jacs.2c11973</a>","ama":"Wang J, Peled TS, Klajn R. Photocleavable anionic glues for light-responsive nanoparticle aggregates. <i>Journal of the American Chemical Society</i>. 2023;145(7):4098-4108. doi:<a href=\"https://doi.org/10.1021/jacs.2c11973\">10.1021/jacs.2c11973</a>","ista":"Wang J, Peled TS, Klajn R. 2023. Photocleavable anionic glues for light-responsive nanoparticle aggregates. Journal of the American Chemical Society. 145(7), 4098–4108.","chicago":"Wang, Jinhua, Tzuf Shay Peled, and Rafal Klajn. “Photocleavable Anionic Glues for Light-Responsive Nanoparticle Aggregates.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2023. <a href=\"https://doi.org/10.1021/jacs.2c11973\">https://doi.org/10.1021/jacs.2c11973</a>."}},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-08-11T11:59:49Z","publisher":"Princeton University","article_processing_charge":"No","title":"The Hasse principle for random Fano hypersurfaces","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2006.02356"}],"article_type":"original","page":"1115-1203","year":"2023","date_created":"2020-10-19T14:28:50Z","volume":197,"related_material":{"link":[{"relation":"press_release","description":"News on IST Homepage","url":"https://ist.ac.at/en/news/when-is-necessary-sufficient/"}]},"abstract":[{"lang":"eng","text":"It is known that the Brauer--Manin obstruction to the Hasse principle is vacuous for smooth Fano hypersurfaces of dimension at least 3 over any number field. Moreover, for such varieties it follows from a general conjecture of Colliot-Thélène that the Brauer--Manin obstruction to the Hasse principle should be the only one, so that the Hasse principle is expected to hold. Working over the field of rational numbers and ordering Fano hypersurfaces of fixed degree and dimension by height, we prove that almost every such hypersurface satisfies the Hasse principle provided that the dimension is at least 3. This proves a conjecture of Poonen and Voloch in every case except for cubic surfaces."}],"citation":{"short":"T.D. Browning, P.L. Boudec, W. Sawin, Annals of Mathematics 197 (2023) 1115–1203.","ista":"Browning TD, Boudec PL, Sawin W. 2023. The Hasse principle for random Fano hypersurfaces. Annals of Mathematics. 197(3), 1115–1203.","chicago":"Browning, Timothy D, Pierre Le Boudec, and Will Sawin. “The Hasse Principle for Random Fano Hypersurfaces.” <i>Annals of Mathematics</i>. Princeton University, 2023. <a href=\"https://doi.org/10.4007/annals.2023.197.3.3\">https://doi.org/10.4007/annals.2023.197.3.3</a>.","apa":"Browning, T. D., Boudec, P. L., &#38; Sawin, W. (2023). The Hasse principle for random Fano hypersurfaces. <i>Annals of Mathematics</i>. Princeton University. <a href=\"https://doi.org/10.4007/annals.2023.197.3.3\">https://doi.org/10.4007/annals.2023.197.3.3</a>","ama":"Browning TD, Boudec PL, Sawin W. The Hasse principle for random Fano hypersurfaces. <i>Annals of Mathematics</i>. 2023;197(3):1115-1203. doi:<a href=\"https://doi.org/10.4007/annals.2023.197.3.3\">10.4007/annals.2023.197.3.3</a>","mla":"Browning, Timothy D., et al. “The Hasse Principle for Random Fano Hypersurfaces.” <i>Annals of Mathematics</i>, vol. 197, no. 3, Princeton University, 2023, pp. 1115–203, doi:<a href=\"https://doi.org/10.4007/annals.2023.197.3.3\">10.4007/annals.2023.197.3.3</a>.","ieee":"T. D. Browning, P. L. Boudec, and W. Sawin, “The Hasse principle for random Fano hypersurfaces,” <i>Annals of Mathematics</i>, vol. 197, no. 3. Princeton University, pp. 1115–1203, 2023."},"day":"01","isi":1,"department":[{"_id":"TiBr"}],"author":[{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D","last_name":"Browning","orcid":"0000-0002-8314-0177","full_name":"Browning, Timothy D"},{"full_name":"Boudec, Pierre Le","last_name":"Boudec","first_name":"Pierre Le"},{"full_name":"Sawin, Will","last_name":"Sawin","first_name":"Will"}],"oa_version":"Preprint","intvolume":"       197","publication":"Annals of Mathematics","oa":1,"publication_status":"published","quality_controlled":"1","arxiv":1,"external_id":{"isi":["000966611000003"],"arxiv":["2006.02356"],"oaworkID":["w3033938593"]},"month":"05","_id":"8682","date_published":"2023-05-01T00:00:00Z","doi":"10.4007/annals.2023.197.3.3","issue":"3","type":"journal_article","publication_identifier":{"issn":["0003-486X"]},"language":[{"iso":"eng"}]},{"citation":{"mla":"Wilsch, Florian Alexander. “Integral Points of Bounded Height on a Log Fano Threefold.” <i>International Mathematics Research Notices</i>, vol. 2023, no. 8, Oxford Academic, 2023, pp. 6780–808, doi:<a href=\"https://doi.org/10.1093/imrn/rnac048\">10.1093/imrn/rnac048</a>.","ieee":"F. A. Wilsch, “Integral points of bounded height on a log Fano threefold,” <i>International Mathematics Research Notices</i>, vol. 2023, no. 8. Oxford Academic, pp. 6780–6808, 2023.","short":"F.A. Wilsch, International Mathematics Research Notices 2023 (2023) 6780–6808.","ista":"Wilsch FA. 2023. Integral points of bounded height on a log Fano threefold. International Mathematics Research Notices. 2023(8), 6780–6808.","ama":"Wilsch FA. Integral points of bounded height on a log Fano threefold. <i>International Mathematics Research Notices</i>. 2023;2023(8):6780-6808. doi:<a href=\"https://doi.org/10.1093/imrn/rnac048\">10.1093/imrn/rnac048</a>","chicago":"Wilsch, Florian Alexander. “Integral Points of Bounded Height on a Log Fano Threefold.” <i>International Mathematics Research Notices</i>. Oxford Academic, 2023. <a href=\"https://doi.org/10.1093/imrn/rnac048\">https://doi.org/10.1093/imrn/rnac048</a>.","apa":"Wilsch, F. A. (2023). Integral points of bounded height on a log Fano threefold. <i>International Mathematics Research Notices</i>. Oxford Academic. <a href=\"https://doi.org/10.1093/imrn/rnac048\">https://doi.org/10.1093/imrn/rnac048</a>"},"day":"01","isi":1,"abstract":[{"text":"We determine an asymptotic formula for the number of integral points of bounded height on a blow-up of P3 outside certain planes using universal torsors.","lang":"eng"}],"title":"Integral points of bounded height on a log Fano threefold","article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publisher":"Oxford Academic","date_updated":"2023-08-01T12:23:55Z","date_created":"2021-01-22T09:31:09Z","year":"2023","volume":2023,"acknowledgement":"This work was supported by the German Academic Exchange Service. Parts of this article were prepared at the Institut de Mathémathiques de Jussieu—Paris Rive Gauche. I wish to thank Antoine Chambert-Loir for his remarks and the institute for its hospitality, as well as the anonymous referee for several useful remarks and suggestions for improvements.","article_type":"original","main_file_link":[{"url":"https://arxiv.org/abs/1901.08503","open_access":"1"}],"status":"public","page":"6780-6808","month":"04","external_id":{"isi":["000773116000001"],"arxiv":["1901.08503"]},"arxiv":1,"date_published":"2023-04-01T00:00:00Z","doi":"10.1093/imrn/rnac048","_id":"9034","publication":"International Mathematics Research Notices","oa":1,"intvolume":"      2023","quality_controlled":"1","publication_status":"published","type":"journal_article","issue":"8","publication_identifier":{"issn":["1073-7928"],"eissn":["1687-0247"]},"language":[{"iso":"eng"}],"department":[{"_id":"TiBr"}],"oa_version":"Preprint","author":[{"first_name":"Florian Alexander","id":"560601DA-8D36-11E9-A136-7AC1E5697425","orcid":"0000-0001-7302-8256","full_name":"Wilsch, Florian Alexander","last_name":"Wilsch"}]},{"date_updated":"2024-01-16T09:29:35Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"MDPI","ddc":["570"],"article_processing_charge":"Yes","title":"Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses","pmid":1,"article_number":"1133","status":"public","article_type":"original","year":"2023","date_created":"2024-01-10T09:46:35Z","acknowledgement":"This research was funded by grants from the European Research Council (Consolidator grant #683154) and European Union’s Horizon 2020 research and innovation program (Marie Sklodowska-Curie Innovative Training Networks, grant #722053, EU-GliaPhD) to N.R., as well as from FP7-PEOPLE Marie Curie Intra-European Fellowship for career development (grant #622289) to G.C. We thank Elena Dossi, Grégory Ghézali, and Jérémie Teillon for support with setting up the MEA system for the two-photon microscope. We would also like to thank Tayfun Palaz for their technical assistance with the EM preparations.","volume":12,"has_accepted_license":"1","abstract":[{"lang":"eng","text":"Connexin 43, an astroglial gap junction protein, is enriched in perisynaptic astroglial processes and plays major roles in synaptic transmission. We have previously found that astroglial Cx43 controls synaptic glutamate levels and allows for activity-dependent glutamine release to sustain physiological synaptic transmissions and cognitiogns. However, whether Cx43 is important for the release of synaptic vesicles, which is a critical component of synaptic efficacy, remains unanswered. Here, using transgenic mice with a glial conditional knockout of Cx43 (Cx43−/−), we investigate whether and how astrocytes regulate the release of synaptic vesicles from hippocampal synapses. We report that CA1 pyramidal neurons and their synapses develop normally in the absence of astroglial Cx43. However, a significant impairment in synaptic vesicle distribution and release dynamics were observed. In particular, the FM1-43 assays performed using two-photon live imaging and combined with multi-electrode array stimulation in acute hippocampal slices, revealed a slower rate of synaptic vesicle release in Cx43−/− mice. Furthermore, paired-pulse recordings showed that synaptic vesicle release probability was also reduced and is dependent on glutamine supply via Cx43 hemichannel (HC). Taken together, we have uncovered a role for Cx43 in regulating presynaptic functions by controlling the rate and probability of synaptic vesicle release. Our findings further highlight the significance of astroglial Cx43 in synaptic transmission and efficacy."}],"citation":{"ieee":"G. T. Cheung <i>et al.</i>, “Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses,” <i>Cells</i>, vol. 12, no. 8. MDPI, 2023.","mla":"Cheung, Giselle T., et al. “Astroglial Connexin 43 Regulates Synaptic Vesicle Release at Hippocampal Synapses.” <i>Cells</i>, vol. 12, no. 8, 1133, MDPI, 2023, doi:<a href=\"https://doi.org/10.3390/cells12081133\">10.3390/cells12081133</a>.","ama":"Cheung GT, Chever O, Rollenhagen A, et al. Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses. <i>Cells</i>. 2023;12(8). doi:<a href=\"https://doi.org/10.3390/cells12081133\">10.3390/cells12081133</a>","ista":"Cheung GT, Chever O, Rollenhagen A, Quenech’du N, Ezan P, Lübke JHR, Rouach N. 2023. Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses. Cells. 12(8), 1133.","apa":"Cheung, G. T., Chever, O., Rollenhagen, A., Quenech’du, N., Ezan, P., Lübke, J. H. R., &#38; Rouach, N. (2023). Astroglial connexin 43 regulates synaptic vesicle release at hippocampal synapses. <i>Cells</i>. MDPI. <a href=\"https://doi.org/10.3390/cells12081133\">https://doi.org/10.3390/cells12081133</a>","chicago":"Cheung, Giselle T, Oana Chever, Astrid Rollenhagen, Nicole Quenech’du, Pascal Ezan, Joachim H. R. Lübke, and Nathalie Rouach. “Astroglial Connexin 43 Regulates Synaptic Vesicle Release at Hippocampal Synapses.” <i>Cells</i>. MDPI, 2023. <a href=\"https://doi.org/10.3390/cells12081133\">https://doi.org/10.3390/cells12081133</a>.","short":"G.T. Cheung, O. Chever, A. Rollenhagen, N. Quenech’du, P. Ezan, J.H.R. Lübke, N. Rouach, Cells 12 (2023)."},"isi":1,"day":"11","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"department":[{"_id":"SiHi"}],"file":[{"access_level":"open_access","checksum":"6798cd75d8857976fbc58a43fd173d68","content_type":"application/pdf","success":1,"date_updated":"2024-01-16T09:26:52Z","file_name":"2023_Cells_Cheung.pdf","file_size":7931643,"creator":"dernst","file_id":"14808","relation":"main_file","date_created":"2024-01-16T09:26:52Z"}],"oa_version":"Published Version","author":[{"full_name":"Cheung, Giselle T","orcid":"0000-0001-8457-2572","last_name":"Cheung","first_name":"Giselle T","id":"471195F6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Oana","last_name":"Chever","full_name":"Chever, Oana"},{"last_name":"Rollenhagen","full_name":"Rollenhagen, Astrid","first_name":"Astrid"},{"first_name":"Nicole","last_name":"Quenech’du","full_name":"Quenech’du, Nicole"},{"first_name":"Pascal","full_name":"Ezan, Pascal","last_name":"Ezan"},{"first_name":"Joachim H. R.","full_name":"Lübke, Joachim H. R.","last_name":"Lübke"},{"full_name":"Rouach, Nathalie","last_name":"Rouach","first_name":"Nathalie"}],"oa":1,"publication":"Cells","intvolume":"        12","publication_status":"published","quality_controlled":"1","external_id":{"isi":["000977445700001"],"pmid":["37190042"]},"month":"04","_id":"14783","date_published":"2023-04-11T00:00:00Z","doi":"10.3390/cells12081133","issue":"8","type":"journal_article","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2073-4409"]},"file_date_updated":"2024-01-16T09:26:52Z","keyword":["General Medicine"]},{"intvolume":"         9","oa":1,"publication":"Science Advances","quality_controlled":"1","publication_status":"published","month":"08","external_id":{"pmid":["37624890"],"isi":["001054596800007"]},"date_published":"2023-08-25T00:00:00Z","doi":"10.1126/sciadv.adg1610","_id":"14784","type":"journal_article","issue":"34","keyword":["Multidisciplinary"],"file_date_updated":"2024-01-16T09:35:28Z","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2375-2548"]},"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"department":[{"_id":"FlSc"}],"file":[{"content_type":"application/pdf","checksum":"b9072e20e2d5d9d34d2c53319bafee41","access_level":"open_access","success":1,"file_name":"2023_ScienceAdvances_GallardoDodd.pdf","date_updated":"2024-01-16T09:35:28Z","date_created":"2024-01-16T09:35:28Z","relation":"main_file","file_id":"14809","creator":"dernst","file_size":1596639}],"author":[{"full_name":"Gallardo-Dodd, Carlos J.","last_name":"Gallardo-Dodd","first_name":"Carlos J."},{"first_name":"Christian","full_name":"Oertlin, Christian","last_name":"Oertlin"},{"first_name":"Julien","full_name":"Record, Julien","last_name":"Record"},{"first_name":"Rômulo G.","last_name":"Galvani","full_name":"Galvani, Rômulo G."},{"first_name":"Christian","full_name":"Sommerauer, Christian","last_name":"Sommerauer"},{"full_name":"Kuznetsov, Nikolai V.","last_name":"Kuznetsov","first_name":"Nikolai V."},{"first_name":"Evangelos","last_name":"Doukoumopoulos","full_name":"Doukoumopoulos, Evangelos"},{"full_name":"Ali, Liaqat","last_name":"Ali","first_name":"Liaqat"},{"first_name":"Mariana M. S.","full_name":"Oliveira, Mariana M. S.","last_name":"Oliveira"},{"last_name":"Seitz","full_name":"Seitz, Christina","first_name":"Christina"},{"last_name":"Percipalle","full_name":"Percipalle, Mathias","id":"45adb726-eb97-11eb-a6c2-c7c3d3caabe9","first_name":"Mathias"},{"first_name":"Tijana","last_name":"Nikić","full_name":"Nikić, Tijana"},{"first_name":"Anastasia A.","full_name":"Sadova, Anastasia A.","last_name":"Sadova"},{"first_name":"Sofia M.","full_name":"Shulgina, Sofia M.","last_name":"Shulgina"},{"last_name":"Shmarov","full_name":"Shmarov, Vjacheslav A.","first_name":"Vjacheslav A."},{"first_name":"Olga V.","full_name":"Kutko, Olga V.","last_name":"Kutko"},{"full_name":"Vlasova, Daria D.","last_name":"Vlasova","first_name":"Daria D."},{"last_name":"Orlova","full_name":"Orlova, Kseniya D.","first_name":"Kseniya D."},{"first_name":"Marina P.","full_name":"Rykova, Marina P.","last_name":"Rykova"},{"first_name":"John","full_name":"Andersson, John","last_name":"Andersson"},{"last_name":"Percipalle","full_name":"Percipalle, Piergiorgio","first_name":"Piergiorgio"},{"full_name":"Kutter, Claudia","last_name":"Kutter","first_name":"Claudia"},{"full_name":"Ponomarev, Sergey A.","last_name":"Ponomarev","first_name":"Sergey A."},{"last_name":"Westerberg","full_name":"Westerberg, Lisa S.","first_name":"Lisa S."}],"oa_version":"Published Version","has_accepted_license":"1","abstract":[{"lang":"eng","text":"The next steps of deep space exploration are manned missions to Moon and Mars. For safe space missions for crew members, it is important to understand the impact of space flight on the immune system. We studied the effects of 21 days dry immersion (DI) exposure on the transcriptomes of T cells isolated from blood samples of eight healthy volunteers. Samples were collected 7 days before DI, at day 7, 14, and 21 during DI, and 7 days after DI. RNA sequencing of CD3+T cells revealed transcriptional alterations across all time points, with most changes occurring 14 days after DI exposure. At day 21, T cells showed evidence of adaptation with a transcriptional profile resembling that of 7 days before DI. At 7 days after DI, T cells again changed their transcriptional profile. These data suggest that T cells adapt by rewiring their transcriptomes in response to simulated weightlessness and that remodeling cues persist when reexposed to normal gravity."}],"citation":{"short":"C.J. Gallardo-Dodd, C. Oertlin, J. Record, R.G. Galvani, C. Sommerauer, N.V. Kuznetsov, E. Doukoumopoulos, L. Ali, M.M.S. Oliveira, C. Seitz, M. Percipalle, T. Nikić, A.A. Sadova, S.M. Shulgina, V.A. Shmarov, O.V. Kutko, D.D. Vlasova, K.D. Orlova, M.P. Rykova, J. Andersson, P. Percipalle, C. Kutter, S.A. Ponomarev, L.S. Westerberg, Science Advances 9 (2023).","chicago":"Gallardo-Dodd, Carlos J., Christian Oertlin, Julien Record, Rômulo G. Galvani, Christian Sommerauer, Nikolai V. Kuznetsov, Evangelos Doukoumopoulos, et al. “Exposure of Volunteers to Microgravity by Dry Immersion Bed over 21 Days Results in Gene Expression Changes and Adaptation of T Cells.” <i>Science Advances</i>. American Association for the Advancement of Science, 2023. <a href=\"https://doi.org/10.1126/sciadv.adg1610\">https://doi.org/10.1126/sciadv.adg1610</a>.","apa":"Gallardo-Dodd, C. J., Oertlin, C., Record, J., Galvani, R. G., Sommerauer, C., Kuznetsov, N. V., … Westerberg, L. S. (2023). Exposure of volunteers to microgravity by dry immersion bed over 21 days results in gene expression changes and adaptation of T cells. <i>Science Advances</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/sciadv.adg1610\">https://doi.org/10.1126/sciadv.adg1610</a>","ama":"Gallardo-Dodd CJ, Oertlin C, Record J, et al. Exposure of volunteers to microgravity by dry immersion bed over 21 days results in gene expression changes and adaptation of T cells. <i>Science Advances</i>. 2023;9(34). doi:<a href=\"https://doi.org/10.1126/sciadv.adg1610\">10.1126/sciadv.adg1610</a>","ista":"Gallardo-Dodd CJ, Oertlin C, Record J, Galvani RG, Sommerauer C, Kuznetsov NV, Doukoumopoulos E, Ali L, Oliveira MMS, Seitz C, Percipalle M, Nikić T, Sadova AA, Shulgina SM, Shmarov VA, Kutko OV, Vlasova DD, Orlova KD, Rykova MP, Andersson J, Percipalle P, Kutter C, Ponomarev SA, Westerberg LS. 2023. Exposure of volunteers to microgravity by dry immersion bed over 21 days results in gene expression changes and adaptation of T cells. Science Advances. 9(34), adg1610.","mla":"Gallardo-Dodd, Carlos J., et al. “Exposure of Volunteers to Microgravity by Dry Immersion Bed over 21 Days Results in Gene Expression Changes and Adaptation of T Cells.” <i>Science Advances</i>, vol. 9, no. 34, adg1610, American Association for the Advancement of Science, 2023, doi:<a href=\"https://doi.org/10.1126/sciadv.adg1610\">10.1126/sciadv.adg1610</a>.","ieee":"C. J. Gallardo-Dodd <i>et al.</i>, “Exposure of volunteers to microgravity by dry immersion bed over 21 days results in gene expression changes and adaptation of T cells,” <i>Science Advances</i>, vol. 9, no. 34. American Association for the Advancement of Science, 2023."},"day":"25","isi":1,"date_updated":"2024-01-16T09:38:58Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Association for the Advancement of Science","ddc":["570"],"pmid":1,"title":"Exposure of volunteers to microgravity by dry immersion bed over 21 days results in gene expression changes and adaptation of T cells","article_processing_charge":"Yes","article_number":"adg1610","article_type":"original","status":"public","date_created":"2024-01-10T09:48:01Z","year":"2023","volume":9,"acknowledgement":"This work was supported by a postdoctoral fellowship from the Swedish Society for Medical Research to J.R., a CAPES-STINT joint grant to R.G.G. and L.S.W., a PhD fellowship from Karolinska Institutet (KID) to E.D., a PhD fellowship from Fundação para a Ciência e a Tecnologia and European Social Fund to M.M.S.O., the program of fundamental research (theme 65.1) of the Institute for Biomedical Problems of the Russian Academy of Sciences (IBMP RAS) to A.A.S., S.M.S., V.A.S., O.V.K., D.D.V., K.D.O., M.P.R., and S.A.P., the Tamkeen under the NYU Abu Dhabi Research Institute Award to the NYUAD Center for Genomics and Systems Biology (ADHPG-CGSB) to P.P., the Knut and Alice Wallenberg foundation to C.K., the Swedish National Space Agency to N.V.K. and L.S.W., Swedish Research Council, Gösta Fraenckel Foundation, and Karolinska Institutet to L.S.W."},{"doi":"10.1111/1758-2229.13203","date_published":"2023-12-01T00:00:00Z","_id":"14785","month":"12","external_id":{"isi":["001080203100001"],"pmid":["37794696"]},"quality_controlled":"1","publication_status":"published","publication":"Environmental Microbiology Reports","oa":1,"intvolume":"        15","keyword":["Agricultural and Biological Sciences (miscellaneous)","Ecology","Evolution","Behavior and Systematics"],"publication_identifier":{"eissn":["1758-2229"]},"language":[{"iso":"eng"}],"file_date_updated":"2024-01-16T09:42:10Z","type":"journal_article","issue":"6","file":[{"relation":"main_file","file_id":"14810","date_created":"2024-01-16T09:42:10Z","creator":"dernst","file_size":1518350,"success":1,"content_type":"application/pdf","checksum":"d09ebb68fee61f4e2e09ec286c9cf1d3","access_level":"open_access","file_name":"2023_EnvirMicroBiolReports_Nies.pdf","date_updated":"2024-01-16T09:42:10Z"}],"department":[{"_id":"MaLo"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"oa_version":"Published Version","author":[{"first_name":"Fabian","last_name":"Nies","full_name":"Nies, Fabian"},{"full_name":"Wein, Tanita","last_name":"Wein","first_name":"Tanita"},{"first_name":"Dustin M.","last_name":"Hanke","full_name":"Hanke, Dustin M."},{"first_name":"Benjamin L","id":"b4eb62ef-ac72-11ed-9503-ed3b4d66c083","orcid":"0000-0002-3461-5391","full_name":"Springstein, Benjamin L","last_name":"Springstein"},{"last_name":"Alcorta","full_name":"Alcorta, Jaime","first_name":"Jaime"},{"full_name":"Taubenheim, Claudia","last_name":"Taubenheim","first_name":"Claudia"},{"first_name":"Tal","full_name":"Dagan, Tal","last_name":"Dagan"}],"has_accepted_license":"1","isi":1,"day":"01","citation":{"mla":"Nies, Fabian, et al. “Role of Natural Transformation in the Evolution of Small Cryptic Plasmids in Synechocystis Sp. PCC 6803.” <i>Environmental Microbiology Reports</i>, vol. 15, no. 6, Wiley, 2023, pp. 656–68, doi:<a href=\"https://doi.org/10.1111/1758-2229.13203\">10.1111/1758-2229.13203</a>.","ieee":"F. Nies <i>et al.</i>, “Role of natural transformation in the evolution of small cryptic plasmids in Synechocystis sp. PCC 6803,” <i>Environmental Microbiology Reports</i>, vol. 15, no. 6. Wiley, pp. 656–668, 2023.","short":"F. Nies, T. Wein, D.M. Hanke, B.L. Springstein, J. Alcorta, C. Taubenheim, T. Dagan, Environmental Microbiology Reports 15 (2023) 656–668.","apa":"Nies, F., Wein, T., Hanke, D. M., Springstein, B. L., Alcorta, J., Taubenheim, C., &#38; Dagan, T. (2023). Role of natural transformation in the evolution of small cryptic plasmids in Synechocystis sp. PCC 6803. <i>Environmental Microbiology Reports</i>. Wiley. <a href=\"https://doi.org/10.1111/1758-2229.13203\">https://doi.org/10.1111/1758-2229.13203</a>","ista":"Nies F, Wein T, Hanke DM, Springstein BL, Alcorta J, Taubenheim C, Dagan T. 2023. Role of natural transformation in the evolution of small cryptic plasmids in Synechocystis sp. PCC 6803. Environmental Microbiology Reports. 15(6), 656–668.","ama":"Nies F, Wein T, Hanke DM, et al. Role of natural transformation in the evolution of small cryptic plasmids in Synechocystis sp. PCC 6803. <i>Environmental Microbiology Reports</i>. 2023;15(6):656-668. doi:<a href=\"https://doi.org/10.1111/1758-2229.13203\">10.1111/1758-2229.13203</a>","chicago":"Nies, Fabian, Tanita Wein, Dustin M. Hanke, Benjamin L Springstein, Jaime Alcorta, Claudia Taubenheim, and Tal Dagan. “Role of Natural Transformation in the Evolution of Small Cryptic Plasmids in Synechocystis Sp. PCC 6803.” <i>Environmental Microbiology Reports</i>. Wiley, 2023. <a href=\"https://doi.org/10.1111/1758-2229.13203\">https://doi.org/10.1111/1758-2229.13203</a>."},"abstract":[{"lang":"eng","text":"Small cryptic plasmids have no clear effect on the host fitness and their functional repertoire remains obscure. The naturally competent cyanobacterium Synechocystis sp. PCC 6803 harbours several small cryptic plasmids; whether their evolution with this species is supported by horizontal transfer remains understudied. Here, we show that the small cryptic plasmid DNA is transferred in the population exclusively by natural transformation, where the transfer frequency of plasmid‐encoded genes is similar to that of chromosome‐encoded genes. Establishing a system to follow gene transfer, we compared the transfer frequency of genes encoded in cryptic plasmids pCA2.4 (2378 bp) and pCB2.4 (2345 bp) within and between populations of two <jats:italic>Synechocystis</jats:italic> sp. PCC 6803 labtypes (termed Kiel and Sevilla). Our results reveal that plasmid gene transfer frequency depends on the recipient labtype. Furthermore, gene transfer via whole plasmid uptake in the Sevilla labtype ranged among the lowest detected transfer rates in our experiments. Our study indicates that horizontal DNA transfer via natural transformation is frequent in the evolution of small cryptic plasmids that reside in naturally competent organisms. Furthermore, we suggest that the contribution of natural transformation to cryptic plasmid persistence in Synechocystis is limited."}],"title":"Role of natural transformation in the evolution of small cryptic plasmids in Synechocystis sp. PCC 6803","pmid":1,"article_processing_charge":"Yes (in subscription journal)","ddc":["570"],"publisher":"Wiley","date_updated":"2024-01-16T09:46:12Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":15,"acknowledgement":"We thank the lab of Francisco Javier Florencio Bel-lido, Sevilla, Spain for supplying theSynechocystislabtype Sevilla used in this work and the lab of MartinHagemann, Rostock, Germany for supplying the pIGAplasmidusedinthiswork.WethankNilsHülterforfruitful discussions. We thank Fenna Stücker forgraphical illustrations and Katrin Schumann, FennaStücker,  and  Lidusha  Manivannan  for  technicalsupport.\r\nChilean National Agency for Research andDevelopment (ANID), Grant/Award Number:21191763; DeutscheForschungsgemeinschaft, Grant/AwardNumbers: 456882089, RTG2501; EuropeanResearch Council (ERC), Grant/AwardNumber: 101043835","date_created":"2024-01-10T10:41:07Z","year":"2023","page":"656-668","article_type":"original","status":"public"},{"article_type":"original","status":"public","volume":887,"acknowledgement":"The authors thank the Czech Science Foundation (project No. 19-28399X) and the Czech Academy of Sciences (RVO: 60077344) and are sincerely grateful to the Bordeaux Imaging Centre (member of the France BioImaging national infrastructure, ANR-10-INBS-04) for help with TEM and to members of the Laboratory of Biological Effects of Metals and Laboratory of Aquaculture and Pathology of Aquatic Organisms (Ruđer Bošković Institute, Croatia) for the assistance with fieldwork.","date_created":"2024-01-10T10:43:08Z","year":"2023","date_updated":"2024-01-16T10:04:57Z","publisher":"Elsevier","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"164010","pmid":1,"title":"First insight in element localisation in different body parts of the acanthocephalan Dentitruncus truttae using TEM and NanoSIMS","article_processing_charge":"No","abstract":[{"lang":"eng","text":"Acanthocephalans, intestinal parasites of vertebrates, are characterised by orders of magnitude higher metal accumulation than free-living organisms, but the mechanism of such effective metal accumulation is still unknown. The aim of our study was to gain new insights into the high-resolution localization of elements in the bodies of acanthocephalans, thus taking an initial step towards elucidating metal uptake and accumulation in organisms under real environmental conditions. For the first time, nanoscale secondary ion mass spectrometry (NanoSIMS) was used for high-resolution mapping of 12 elements (C, Ca, Cu, Fe, N, Na, O, P, Pb, S, Se, and Tl) in three selected body parts (trunk spines, inner part of the proboscis receptacle and inner surface of the tegument) of Dentitruncus truttae, a parasite of brown trout (Salmo trutta) from the Krka River in Croatia. In addition, the same body parts were examined using transmission electron microscopy (TEM) and correlated with NanoSIMS images. Metal concentrations determined using HR ICP-MS confirmed higher accumulation in D. truttae than in the fish intestine. The chemical composition of the acanthocephalan body showed the highest density of C, Ca, N, Na, O, S, as important and constitutive elements in living cells in all studied structures, while Fe was predominant among trace elements. In general, higher element density was found in trunk spines and tegument, as body structures responsible for substance absorption in parasites. The results obtained with NanoSIMS and TEM-NanoSIMS correlative imaging represent pilot data for mapping of elements at nanoscale resolution in the ultrastructure of various body parts of acanthocephalans and generally provide a contribution for further application of this technique in all parasite species."}],"day":"20","isi":1,"citation":{"mla":"Filipović Marijić, Vlatka, et al. “First Insight in Element Localisation in Different Body Parts of the Acanthocephalan Dentitruncus Truttae Using TEM and NanoSIMS.” <i>Science of The Total Environment</i>, vol. 887, 164010, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.scitotenv.2023.164010\">10.1016/j.scitotenv.2023.164010</a>.","ieee":"V. Filipović Marijić <i>et al.</i>, “First insight in element localisation in different body parts of the acanthocephalan Dentitruncus truttae using TEM and NanoSIMS,” <i>Science of The Total Environment</i>, vol. 887. Elsevier, 2023.","short":"V. Filipović Marijić, M.A. Subirana, D. Schaumlöffel, J. Barišić, E. Gontier, N. Krasnici, T. Mijošek, J.S. Hernández-Orts, T. Scholz, M. Erk, Science of The Total Environment 887 (2023).","ama":"Filipović Marijić V, Subirana MA, Schaumlöffel D, et al. First insight in element localisation in different body parts of the acanthocephalan Dentitruncus truttae using TEM and NanoSIMS. <i>Science of The Total Environment</i>. 2023;887. doi:<a href=\"https://doi.org/10.1016/j.scitotenv.2023.164010\">10.1016/j.scitotenv.2023.164010</a>","ista":"Filipović Marijić V, Subirana MA, Schaumlöffel D, Barišić J, Gontier E, Krasnici N, Mijošek T, Hernández-Orts JS, Scholz T, Erk M. 2023. First insight in element localisation in different body parts of the acanthocephalan Dentitruncus truttae using TEM and NanoSIMS. Science of The Total Environment. 887, 164010.","chicago":"Filipović Marijić, Vlatka, Maria Angels Subirana, Dirk Schaumlöffel, Josip Barišić, Etienne Gontier, Nesrete Krasnici, Tatjana Mijošek, Jesús S. Hernández-Orts, Tomáš Scholz, and Marijana Erk. “First Insight in Element Localisation in Different Body Parts of the Acanthocephalan Dentitruncus Truttae Using TEM and NanoSIMS.” <i>Science of The Total Environment</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.scitotenv.2023.164010\">https://doi.org/10.1016/j.scitotenv.2023.164010</a>.","apa":"Filipović Marijić, V., Subirana, M. A., Schaumlöffel, D., Barišić, J., Gontier, E., Krasnici, N., … Erk, M. (2023). First insight in element localisation in different body parts of the acanthocephalan Dentitruncus truttae using TEM and NanoSIMS. <i>Science of The Total Environment</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.scitotenv.2023.164010\">https://doi.org/10.1016/j.scitotenv.2023.164010</a>"},"oa_version":"None","author":[{"full_name":"Filipović Marijić, Vlatka","last_name":"Filipović Marijić","first_name":"Vlatka"},{"first_name":"Maria Angels","last_name":"Subirana","full_name":"Subirana, Maria Angels"},{"first_name":"Dirk","full_name":"Schaumlöffel, Dirk","last_name":"Schaumlöffel"},{"full_name":"Barišić, Josip","last_name":"Barišić","first_name":"Josip"},{"full_name":"Gontier, Etienne","last_name":"Gontier","first_name":"Etienne"},{"last_name":"Krasnici","full_name":"Krasnici, Nesrete","id":"cb5852d4-287f-11ed-baf0-bc1dd2d5c745","first_name":"Nesrete"},{"first_name":"Tatjana","full_name":"Mijošek, Tatjana","last_name":"Mijošek"},{"last_name":"Hernández-Orts","full_name":"Hernández-Orts, Jesús S.","first_name":"Jesús S."},{"first_name":"Tomáš","last_name":"Scholz","full_name":"Scholz, Tomáš"},{"first_name":"Marijana","last_name":"Erk","full_name":"Erk, Marijana"}],"department":[{"_id":"LifeSc"}],"keyword":["Pollution","Waste Management and Disposal","Environmental Chemistry","Environmental Engineering"],"publication_identifier":{"issn":["0048-9697"]},"language":[{"iso":"eng"}],"type":"journal_article","quality_controlled":"1","publication_status":"published","publication":"Science of The Total Environment","intvolume":"       887","date_published":"2023-08-20T00:00:00Z","doi":"10.1016/j.scitotenv.2023.164010","_id":"14786","month":"08","external_id":{"pmid":["37169189"],"isi":["001002645100001"]}},{"type":"journal_article","issue":"8","keyword":["Genetics","Ecology","Evolution","Behavior and Systematics"],"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1365-294X"],"issn":["0962-1083"]},"publication":"Molecular Ecology","intvolume":"        32","oa":1,"quality_controlled":"1","publication_status":"published","month":"04","external_id":{"pmid":["36651268"],"isi":["000919244600001"]},"doi":"10.1111/mec.16849","date_published":"2023-04-01T00:00:00Z","_id":"14787","oa_version":"Preprint","author":[{"first_name":"Sean","id":"43161670-5719-11EA-8025-FABC3DDC885E","full_name":"Stankowski, Sean","last_name":"Stankowski"},{"full_name":"Chase, Madeline A.","last_name":"Chase","first_name":"Madeline A."},{"first_name":"Hanna","full_name":"McIntosh, Hanna","last_name":"McIntosh"},{"last_name":"Streisfeld","full_name":"Streisfeld, Matthew A.","first_name":"Matthew A."}],"department":[{"_id":"NiBa"}],"abstract":[{"text":"Understanding the phenotypic and genetic architecture of reproductive isolation is a long‐standing goal of speciation research. In several systems, large‐effect loci contributing to barrier phenotypes have been characterized, but such causal connections are rarely known for more complex genetic architectures. In this study, we combine “top‐down” and “bottom‐up” approaches with demographic modelling toward an integrated understanding of speciation across a monkeyflower hybrid zone. Previous work suggests that pollinator visitation acts as a primary barrier to gene flow between two divergent red‐ and yellow‐flowered ecotypes of<jats:italic>Mimulus aurantiacus</jats:italic>. Several candidate isolating traits and anonymous single nucleotide polymorphism loci under divergent selection have been identified, but their genomic positions remain unknown. Here, we report findings from demographic analyses that indicate this hybrid zone formed by secondary contact, but that subsequent gene flow was restricted by widespread barrier loci across the genome. Using a novel, geographic cline‐based genome scan, we demonstrate that candidate barrier loci are broadly distributed across the genome, rather than mapping to one or a few “islands of speciation.” Quantitative trait locus (QTL) mapping reveals that most floral traits are highly polygenic, with little evidence that QTL colocalize, indicating that most traits are genetically independent. Finally, we find little evidence that QTL and candidate barrier loci overlap, suggesting that some loci contribute to other forms of reproductive isolation. Our findings highlight the challenges of understanding the genetic architecture of reproductive isolation and reveal that barriers to gene flow other than pollinator isolation may play an important role in this system.","lang":"eng"}],"citation":{"chicago":"Stankowski, Sean, Madeline A. Chase, Hanna McIntosh, and Matthew A. Streisfeld. “Integrating Top‐down and Bottom‐up Approaches to Understand the Genetic Architecture of Speciation across a Monkeyflower Hybrid Zone.” <i>Molecular Ecology</i>. Wiley, 2023. <a href=\"https://doi.org/10.1111/mec.16849\">https://doi.org/10.1111/mec.16849</a>.","ista":"Stankowski S, Chase MA, McIntosh H, Streisfeld MA. 2023. Integrating top‐down and bottom‐up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone. Molecular Ecology. 32(8), 2041–2054.","ama":"Stankowski S, Chase MA, McIntosh H, Streisfeld MA. Integrating top‐down and bottom‐up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone. <i>Molecular Ecology</i>. 2023;32(8):2041-2054. doi:<a href=\"https://doi.org/10.1111/mec.16849\">10.1111/mec.16849</a>","apa":"Stankowski, S., Chase, M. A., McIntosh, H., &#38; Streisfeld, M. A. (2023). Integrating top‐down and bottom‐up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone. <i>Molecular Ecology</i>. Wiley. <a href=\"https://doi.org/10.1111/mec.16849\">https://doi.org/10.1111/mec.16849</a>","short":"S. Stankowski, M.A. Chase, H. McIntosh, M.A. Streisfeld, Molecular Ecology 32 (2023) 2041–2054.","ieee":"S. Stankowski, M. A. Chase, H. McIntosh, and M. A. Streisfeld, “Integrating top‐down and bottom‐up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone,” <i>Molecular Ecology</i>, vol. 32, no. 8. Wiley, pp. 2041–2054, 2023.","mla":"Stankowski, Sean, et al. “Integrating Top‐down and Bottom‐up Approaches to Understand the Genetic Architecture of Speciation across a Monkeyflower Hybrid Zone.” <i>Molecular Ecology</i>, vol. 32, no. 8, Wiley, 2023, pp. 2041–54, doi:<a href=\"https://doi.org/10.1111/mec.16849\">10.1111/mec.16849</a>."},"isi":1,"day":"01","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2022.01.28.478139"}],"article_type":"original","status":"public","page":"2041-2054","date_created":"2024-01-10T10:44:45Z","year":"2023","volume":32,"acknowledgement":"We thank Julian Catchen for making modifications to Stacks to aid this project. Peter L. Ralph, Thomas Nelson, Roger K. Butlin, Anja M. Westram and Nicholas H. Barton provided advice, stimulating discussion and critical feedback. The project was supported by National Science Foundation grant DEB-1258199.","date_updated":"2024-01-16T10:10:00Z","publisher":"Wiley","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"title":"Integrating top‐down and bottom‐up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone","article_processing_charge":"No"},{"status":"public","article_type":"original","year":"2023","date_created":"2024-01-10T10:45:55Z","acknowledgement":"We thank the entire Ries and Kaksonen labs for fruitful discussions and support. This work was supported by the European Research Council (ERC CoG-724489 to J. Ries), the National Institutes of Health Common Fund 4D Nucleome Program (Grant U01 to J. Ries), the Human Frontier Science Program (RGY0065/2017 to J. Ries), the EMBL Interdisciplinary Postdoc Programme (EIPOD) under Marie Curie Actions COFUND (Grant 229597 to O. Avinoam), the European Molecular Biology Laboratory (M. Mund, A. Tschanz, Y.-L. Wu and J. Ries), and the Swiss National Science Foundation (grant 310030B_182825 and NCCR Chemical Biology to M. Kaksonen). O. Avinoam is an incumbent of the Miriam Berman Presidential Development Chair.","volume":222,"publisher":"Rockefeller University Press","date_updated":"2024-01-16T10:17:05Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"article_processing_charge":"No","title":"Clathrin coats partially preassemble and subsequently bend during endocytosis","pmid":1,"article_number":"e202206038","abstract":[{"text":"Eukaryotic cells use clathrin-mediated endocytosis to take up a large range of extracellular cargo. During endocytosis, a clathrin coat forms on the plasma membrane, but it remains controversial when and how it is remodeled into a spherical vesicle.\r\nHere, we use 3D superresolution microscopy to determine the precise geometry of the clathrin coat at large numbers of endocytic sites. Through pseudo-temporal sorting, we determine the average trajectory of clathrin remodeling during endocytosis. We find that clathrin coats assemble first on flat membranes to 50% of the coat area before they become rapidly and continuously bent, and this mechanism is confirmed in three cell lines. We introduce the cooperative curvature model, which is based on positive feedback for curvature generation. It accurately describes the measured shapes and dynamics of the clathrin coat and could represent a general mechanism for clathrin coat remodeling on the plasma membrane.","lang":"eng"}],"citation":{"mla":"Mund, Markus, et al. “Clathrin Coats Partially Preassemble and Subsequently Bend during Endocytosis.” <i>Journal of Cell Biology</i>, vol. 222, no. 3, e202206038, Rockefeller University Press, 2023, doi:<a href=\"https://doi.org/10.1083/jcb.202206038\">10.1083/jcb.202206038</a>.","ieee":"M. Mund <i>et al.</i>, “Clathrin coats partially preassemble and subsequently bend during endocytosis,” <i>Journal of Cell Biology</i>, vol. 222, no. 3. Rockefeller University Press, 2023.","short":"M. Mund, A. Tschanz, Y.-L. Wu, F.F. Frey, J.L. Mehl, M. Kaksonen, O. Avinoam, U.S. Schwarz, J. Ries, Journal of Cell Biology 222 (2023).","chicago":"Mund, Markus, Aline Tschanz, Yu-Le Wu, Felix F Frey, Johanna L. Mehl, Marko Kaksonen, Ori Avinoam, Ulrich S. Schwarz, and Jonas Ries. “Clathrin Coats Partially Preassemble and Subsequently Bend during Endocytosis.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2023. <a href=\"https://doi.org/10.1083/jcb.202206038\">https://doi.org/10.1083/jcb.202206038</a>.","ista":"Mund M, Tschanz A, Wu Y-L, Frey FF, Mehl JL, Kaksonen M, Avinoam O, Schwarz US, Ries J. 2023. Clathrin coats partially preassemble and subsequently bend during endocytosis. Journal of Cell Biology. 222(3), e202206038.","ama":"Mund M, Tschanz A, Wu Y-L, et al. Clathrin coats partially preassemble and subsequently bend during endocytosis. <i>Journal of Cell Biology</i>. 2023;222(3). doi:<a href=\"https://doi.org/10.1083/jcb.202206038\">10.1083/jcb.202206038</a>","apa":"Mund, M., Tschanz, A., Wu, Y.-L., Frey, F. F., Mehl, J. L., Kaksonen, M., … Ries, J. (2023). Clathrin coats partially preassemble and subsequently bend during endocytosis. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.202206038\">https://doi.org/10.1083/jcb.202206038</a>"},"day":"03","isi":1,"has_accepted_license":"1","oa_version":"Published Version","author":[{"full_name":"Mund, Markus","last_name":"Mund","first_name":"Markus"},{"last_name":"Tschanz","full_name":"Tschanz, Aline","first_name":"Aline"},{"first_name":"Yu-Le","last_name":"Wu","full_name":"Wu, Yu-Le"},{"last_name":"Frey","orcid":"0000-0001-8501-6017","full_name":"Frey, Felix F","id":"a0270b37-8f1a-11ec-95c7-8e710c59a4f3","first_name":"Felix F"},{"full_name":"Mehl, Johanna L.","last_name":"Mehl","first_name":"Johanna L."},{"first_name":"Marko","full_name":"Kaksonen, Marko","last_name":"Kaksonen"},{"full_name":"Avinoam, Ori","last_name":"Avinoam","first_name":"Ori"},{"first_name":"Ulrich S.","full_name":"Schwarz, Ulrich S.","last_name":"Schwarz"},{"full_name":"Ries, Jonas","last_name":"Ries","first_name":"Jonas"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"department":[{"_id":"AnSa"}],"file":[{"date_created":"2024-01-16T10:15:09Z","relation":"main_file","file_id":"14811","file_size":5678069,"creator":"dernst","success":1,"access_level":"open_access","content_type":"application/pdf","checksum":"505d5cac36c14b073b68c7fed1a92bd3","file_name":"2023_JCB_Mund.pdf","date_updated":"2024-01-16T10:15:09Z"}],"issue":"3","type":"journal_article","file_date_updated":"2024-01-16T10:15:09Z","publication_identifier":{"issn":["0021-9525"],"eissn":["1540-8140"]},"language":[{"iso":"eng"}],"keyword":["Cell Biology"],"oa":1,"intvolume":"       222","publication":"Journal of Cell Biology","publication_status":"published","quality_controlled":"1","external_id":{"pmid":["36734980"],"isi":["000978065000001"]},"month":"02","_id":"14788","date_published":"2023-02-03T00:00:00Z","doi":"10.1083/jcb.202206038"},{"publisher":"Association for Computing Machinery","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-01-17T08:38:35Z","ddc":["000"],"article_processing_charge":"Yes (in subscription journal)","title":"The effect of display capabilities on the gloss consistency between real and virtual objects","article_number":"90","status":"public","project":[{"grant_number":"M03319","_id":"eb901961-77a9-11ec-83b8-f5c883a62027","name":"Perception-Aware Appearance Fabrication"}],"year":"2023","date_created":"2024-01-14T23:00:57Z","acknowledgement":"This work is supported by FWF Lise Meitner (Grant M 3319), Spanish Agencia Estatal de Investigación (project PID2022-141539NBI00), European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement\r\nN◦ 725253–EyeCode), Swiss National Science Foundation (Grant no. 200502), and academic gifts from Meta. We thank Dmitry Lubyako and Ali Özgür Yöntem for building the turntable for our experiment.","scopus_import":"1","has_accepted_license":"1","abstract":[{"lang":"eng","text":"A faithful reproduction of gloss is inherently difficult because of the limited dynamic range, peak luminance, and 3D capabilities of display devices. This work investigates how the display capabilities affect gloss appearance with respect to a real-world reference object. To this end, we employ an accurate imaging pipeline to achieve a perceptual gloss match between a virtual and real object presented side-by-side on an augmented-reality high-dynamic-range (HDR) stereoscopic display, which has not been previously attained to this extent. Based on this precise gloss reproduction, we conduct a series of gloss matching experiments to study how gloss perception degrades based on individual factors: object albedo, display luminance, dynamic range, stereopsis, and tone mapping. We support the study with a detailed analysis of individual factors, followed by an in-depth discussion on the observed perceptual effects. Our experiments demonstrate that stereoscopic presentation has a limited effect on the gloss matching task on our HDR display. However, both reduced luminance and dynamic range of the display reduce the perceived gloss. This means that the visual system cannot compensate for the changes in gloss appearance across luminance (lack of gloss constancy), and the tone mapping operator should be carefully selected when reproducing gloss on a low dynamic range (LDR) display."}],"citation":{"short":"B. Chen, A. Jindal, M. Piovarci, C. Wang, H.P. Seidel, P. Didyk, K. Myszkowski, A. Serrano, R.K. Mantiuk, in:, Proceedings of the SIGGRAPH Asia 2023 Conference, Association for Computing Machinery, 2023.","ama":"Chen B, Jindal A, Piovarci M, et al. The effect of display capabilities on the gloss consistency between real and virtual objects. In: <i>Proceedings of the SIGGRAPH Asia 2023 Conference</i>. Association for Computing Machinery; 2023. doi:<a href=\"https://doi.org/10.1145/3610548.3618226\">10.1145/3610548.3618226</a>","ista":"Chen B, Jindal A, Piovarci M, Wang C, Seidel HP, Didyk P, Myszkowski K, Serrano A, Mantiuk RK. 2023. The effect of display capabilities on the gloss consistency between real and virtual objects. Proceedings of the SIGGRAPH Asia 2023 Conference. SIGGRAPH: Computer Graphics and Interactive Techniques Conference, 90.","chicago":"Chen, Bin, Akshay Jindal, Michael Piovarci, Chao Wang, Hans Peter Seidel, Piotr Didyk, Karol Myszkowski, Ana Serrano, and Rafał K. Mantiuk. “The Effect of Display Capabilities on the Gloss Consistency between Real and Virtual Objects.” In <i>Proceedings of the SIGGRAPH Asia 2023 Conference</i>. Association for Computing Machinery, 2023. <a href=\"https://doi.org/10.1145/3610548.3618226\">https://doi.org/10.1145/3610548.3618226</a>.","apa":"Chen, B., Jindal, A., Piovarci, M., Wang, C., Seidel, H. P., Didyk, P., … Mantiuk, R. K. (2023). The effect of display capabilities on the gloss consistency between real and virtual objects. In <i>Proceedings of the SIGGRAPH Asia 2023 Conference</i>. Sydney, Australia: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3610548.3618226\">https://doi.org/10.1145/3610548.3618226</a>","mla":"Chen, Bin, et al. “The Effect of Display Capabilities on the Gloss Consistency between Real and Virtual Objects.” <i>Proceedings of the SIGGRAPH Asia 2023 Conference</i>, 90, Association for Computing Machinery, 2023, doi:<a href=\"https://doi.org/10.1145/3610548.3618226\">10.1145/3610548.3618226</a>.","ieee":"B. Chen <i>et al.</i>, “The effect of display capabilities on the gloss consistency between real and virtual objects,” in <i>Proceedings of the SIGGRAPH Asia 2023 Conference</i>, Sydney, Australia, 2023."},"day":"10","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"department":[{"_id":"BeBi"}],"file":[{"relation":"main_file","date_created":"2024-01-17T08:33:06Z","file_id":"14823","file_size":95967451,"creator":"dernst","file_name":"2023_SA_Chen.pdf","date_updated":"2024-01-17T08:33:06Z","access_level":"open_access","content_type":"application/pdf","checksum":"8abe27432ed222b50d1af9b3388db1b0","success":1}],"author":[{"last_name":"Chen","full_name":"Chen, Bin","first_name":"Bin"},{"last_name":"Jindal","full_name":"Jindal, Akshay","first_name":"Akshay"},{"id":"62E473F4-5C99-11EA-A40E-AF823DDC885E","first_name":"Michael","last_name":"Piovarci","orcid":"0000-0002-5062-4474","full_name":"Piovarci, Michael"},{"first_name":"Chao","last_name":"Wang","full_name":"Wang, Chao"},{"last_name":"Seidel","full_name":"Seidel, Hans Peter","first_name":"Hans Peter"},{"full_name":"Didyk, Piotr","last_name":"Didyk","first_name":"Piotr"},{"first_name":"Karol","last_name":"Myszkowski","full_name":"Myszkowski, Karol"},{"last_name":"Serrano","full_name":"Serrano, Ana","first_name":"Ana"},{"full_name":"Mantiuk, Rafał K.","last_name":"Mantiuk","first_name":"Rafał K."}],"oa_version":"Published Version","oa":1,"publication":"Proceedings of the SIGGRAPH Asia 2023 Conference","publication_status":"published","quality_controlled":"1","conference":{"name":"SIGGRAPH: Computer Graphics and Interactive Techniques Conference","start_date":"2023-12-12","end_date":"2023-12-15","location":"Sydney, Australia"},"month":"12","_id":"14798","doi":"10.1145/3610548.3618226","date_published":"2023-12-10T00:00:00Z","type":"conference","file_date_updated":"2024-01-17T08:33:06Z","language":[{"iso":"eng"}],"publication_identifier":{"isbn":["9798400703157"]}},{"publication":"Journal of Applied Crystallography","oa":1,"intvolume":"        56","publication_status":"published","quality_controlled":"1","external_id":{"arxiv":["2303.03772"]},"arxiv":1,"month":"12","_id":"14799","doi":"10.1107/S1600576723008324","date_published":"2023-12-01T00:00:00Z","issue":"6","type":"journal_article","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1600-5767"],"issn":["0021-8898"]},"file_date_updated":"2024-01-17T07:47:35Z","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"department":[{"_id":"LifeSc"}],"file":[{"file_name":"2023_JourApplCrystallography_Pauw.pdf","date_updated":"2024-01-17T07:47:35Z","success":1,"checksum":"dab30d4556360f2cecf99f4b7efb0ee9","access_level":"open_access","content_type":"application/pdf","file_id":"14822","relation":"main_file","date_created":"2024-01-17T07:47:35Z","creator":"dernst","file_size":2165864}],"author":[{"first_name":"Brian R.","full_name":"Pauw, Brian R.","last_name":"Pauw"},{"last_name":"Smales","full_name":"Smales, Glen J.","first_name":"Glen J."},{"full_name":"Anker, Andy S.","last_name":"Anker","first_name":"Andy S."},{"full_name":"Annadurai, Venkatasamy","last_name":"Annadurai","first_name":"Venkatasamy"},{"last_name":"Balazs","full_name":"Balazs, Daniel","orcid":"0000-0001-7597-043X","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","first_name":"Daniel"},{"first_name":"Ralf","full_name":"Bienert, Ralf","last_name":"Bienert"},{"full_name":"Bouwman, Wim G.","last_name":"Bouwman","first_name":"Wim G."},{"first_name":"Ingo","full_name":"Breßler, Ingo","last_name":"Breßler"},{"first_name":"Joachim","full_name":"Breternitz, Joachim","last_name":"Breternitz"},{"full_name":"Brok, Erik S.","last_name":"Brok","first_name":"Erik S."},{"first_name":"Gary","last_name":"Bryant","full_name":"Bryant, Gary"},{"full_name":"Clulow, Andrew J.","last_name":"Clulow","first_name":"Andrew J."},{"first_name":"Erin R.","last_name":"Crater","full_name":"Crater, Erin R."},{"last_name":"De Geuser","full_name":"De Geuser, Frédéric","first_name":"Frédéric"},{"full_name":"Giudice, Alessandra Del","last_name":"Giudice","first_name":"Alessandra Del"},{"last_name":"Deumer","full_name":"Deumer, Jérôme","first_name":"Jérôme"},{"last_name":"Disch","full_name":"Disch, Sabrina","first_name":"Sabrina"},{"last_name":"Dutt","full_name":"Dutt, Shankar","first_name":"Shankar"},{"first_name":"Kilian","last_name":"Frank","full_name":"Frank, Kilian"},{"first_name":"Emiliano","last_name":"Fratini","full_name":"Fratini, Emiliano"},{"full_name":"Garcia, Paulo R.A.F.","last_name":"Garcia","first_name":"Paulo R.A.F."},{"last_name":"Gilbert","full_name":"Gilbert, Elliot P.","first_name":"Elliot P."},{"last_name":"Hahn","full_name":"Hahn, Marc B.","first_name":"Marc B."},{"last_name":"Hallett","full_name":"Hallett, James","first_name":"James"},{"full_name":"Hohenschutz, Max","last_name":"Hohenschutz","first_name":"Max"},{"last_name":"Hollamby","full_name":"Hollamby, Martin","first_name":"Martin"},{"first_name":"Steven","last_name":"Huband","full_name":"Huband, Steven"},{"first_name":"Jan","last_name":"Ilavsky","full_name":"Ilavsky, Jan"},{"first_name":"Johanna K.","last_name":"Jochum","full_name":"Jochum, Johanna K."},{"first_name":"Mikkel","last_name":"Juelsholt","full_name":"Juelsholt, Mikkel"},{"first_name":"Bradley W.","last_name":"Mansel","full_name":"Mansel, Bradley W."},{"full_name":"Penttilä, Paavo","last_name":"Penttilä","first_name":"Paavo"},{"first_name":"Rebecca K.","full_name":"Pittkowski, Rebecca K.","last_name":"Pittkowski"},{"first_name":"Giuseppe","full_name":"Portale, Giuseppe","last_name":"Portale"},{"first_name":"Lilo D.","full_name":"Pozzo, Lilo D.","last_name":"Pozzo"},{"last_name":"Rochels","full_name":"Rochels, Leonhard","first_name":"Leonhard"},{"first_name":"Julian M.","last_name":"Rosalie","full_name":"Rosalie, Julian M."},{"first_name":"Patrick E.J.","last_name":"Saloga","full_name":"Saloga, Patrick E.J."},{"last_name":"Seibt","full_name":"Seibt, Susanne","first_name":"Susanne"},{"first_name":"Andrew J.","last_name":"Smith","full_name":"Smith, Andrew J."},{"last_name":"Smith","full_name":"Smith, Gregory N.","first_name":"Gregory N."},{"first_name":"Glenn A.","full_name":"Spiering, Glenn A.","last_name":"Spiering"},{"first_name":"Tomasz M.","last_name":"Stawski","full_name":"Stawski, Tomasz M."},{"first_name":"Olivier","full_name":"Taché, Olivier","last_name":"Taché"},{"full_name":"Thünemann, Andreas F.","last_name":"Thünemann","first_name":"Andreas F."},{"first_name":"Kristof","full_name":"Toth, Kristof","last_name":"Toth"},{"first_name":"Andrew E.","last_name":"Whitten","full_name":"Whitten, Andrew E."},{"full_name":"Wuttke, Joachim","last_name":"Wuttke","first_name":"Joachim"}],"oa_version":"Published Version","scopus_import":"1","has_accepted_license":"1","abstract":[{"text":"A round-robin study has been carried out to estimate the impact of the human element in small-angle scattering data analysis. Four corrected datasets were provided to participants ready for analysis. All datasets were measured on samples containing spherical scatterers, with two datasets in dilute dispersions and two from powders. Most of the 46 participants correctly identified the number of populations in the dilute dispersions, with half of the population\r\nmean entries within 1.5% and half of the population width entries within 40%. Due to the added complexity of the structure factor, far fewer people submitted answers on the powder datasets. For those that did, half of the entries for the means and widths were within 44 and 86%, respectively. This round-robin experiment highlights several causes for the discrepancies, for which solutions are proposed.","lang":"eng"}],"citation":{"ista":"Pauw BR, Smales GJ, Anker AS, Annadurai V, Balazs D, Bienert R, Bouwman WG, Breßler I, Breternitz J, Brok ES, Bryant G, Clulow AJ, Crater ER, De Geuser F, Giudice AD, Deumer J, Disch S, Dutt S, Frank K, Fratini E, Garcia PRAF, Gilbert EP, Hahn MB, Hallett J, Hohenschutz M, Hollamby M, Huband S, Ilavsky J, Jochum JK, Juelsholt M, Mansel BW, Penttilä P, Pittkowski RK, Portale G, Pozzo LD, Rochels L, Rosalie JM, Saloga PEJ, Seibt S, Smith AJ, Smith GN, Spiering GA, Stawski TM, Taché O, Thünemann AF, Toth K, Whitten AE, Wuttke J. 2023. The human factor: Results of a small-angle scattering data analysis round robin. Journal of Applied Crystallography. 56(6), 1618–1629.","ama":"Pauw BR, Smales GJ, Anker AS, et al. The human factor: Results of a small-angle scattering data analysis round robin. <i>Journal of Applied Crystallography</i>. 2023;56(6):1618-1629. doi:<a href=\"https://doi.org/10.1107/S1600576723008324\">10.1107/S1600576723008324</a>","chicago":"Pauw, Brian R., Glen J. Smales, Andy S. Anker, Venkatasamy Annadurai, Daniel Balazs, Ralf Bienert, Wim G. Bouwman, et al. “The Human Factor: Results of a Small-Angle Scattering Data Analysis Round Robin.” <i>Journal of Applied Crystallography</i>, 2023. <a href=\"https://doi.org/10.1107/S1600576723008324\">https://doi.org/10.1107/S1600576723008324</a>.","apa":"Pauw, B. R., Smales, G. J., Anker, A. S., Annadurai, V., Balazs, D., Bienert, R., … Wuttke, J. (2023). The human factor: Results of a small-angle scattering data analysis round robin. <i>Journal of Applied Crystallography</i>. <a href=\"https://doi.org/10.1107/S1600576723008324\">https://doi.org/10.1107/S1600576723008324</a>","short":"B.R. Pauw, G.J. Smales, A.S. Anker, V. Annadurai, D. Balazs, R. Bienert, W.G. Bouwman, I. Breßler, J. Breternitz, E.S. Brok, G. Bryant, A.J. Clulow, E.R. Crater, F. De Geuser, A.D. Giudice, J. Deumer, S. Disch, S. Dutt, K. Frank, E. Fratini, P.R.A.F. Garcia, E.P. Gilbert, M.B. Hahn, J. Hallett, M. Hohenschutz, M. Hollamby, S. Huband, J. Ilavsky, J.K. Jochum, M. Juelsholt, B.W. Mansel, P. Penttilä, R.K. Pittkowski, G. Portale, L.D. Pozzo, L. Rochels, J.M. Rosalie, P.E.J. Saloga, S. Seibt, A.J. Smith, G.N. Smith, G.A. Spiering, T.M. Stawski, O. Taché, A.F. Thünemann, K. Toth, A.E. Whitten, J. Wuttke, Journal of Applied Crystallography 56 (2023) 1618–1629.","ieee":"B. R. Pauw <i>et al.</i>, “The human factor: Results of a small-angle scattering data analysis round robin,” <i>Journal of Applied Crystallography</i>, vol. 56, no. 6. pp. 1618–1629, 2023.","mla":"Pauw, Brian R., et al. “The Human Factor: Results of a Small-Angle Scattering Data Analysis Round Robin.” <i>Journal of Applied Crystallography</i>, vol. 56, no. 6, 2023, pp. 1618–29, doi:<a href=\"https://doi.org/10.1107/S1600576723008324\">10.1107/S1600576723008324</a>."},"day":"01","date_updated":"2024-01-17T07:49:52Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["540"],"article_processing_charge":"Yes (via OA deal)","title":"The human factor: Results of a small-angle scattering data analysis round robin","status":"public","article_type":"original","page":"1618-1629","year":"2023","date_created":"2024-01-14T23:00:57Z","acknowledgement":"KT acknowledges the NIST–NRC postdoctoral fellowship program for support. This work was partially funded through the European Metrology Programme for Innovation and Research (EMPIR) project No. 17NRM04.\r\nCertain commercial equipment, instruments, materials or software are identified in this article in order to specify the experimental procedure adequately. Such identification is not intended to imply recommendation or endorsement by NIST, nor is it intended to imply that the materials or equipment identified are necessarily the best available for the purpose. Open access funding enabled and organized by Projekt DEAL.","volume":56},{"date_created":"2024-01-16T10:23:01Z","year":"2023","contributor":[{"first_name":"Zusanna","last_name":"Zagrodzka"},{"first_name":"Martin","last_name":"Garlovsky"},{"first_name":"Arka","id":"6AAB2240-CA9A-11E9-9C1A-D9D1E5697425","orcid":"0000-0002-4530-8469","last_name":"Pal"},{"orcid":"0000-0002-1145-9226","last_name":"Shipilina","first_name":"Daria","id":"428A94B0-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Diego Fernando","id":"ae681a14-dc74-11ea-a0a7-c6ef18161701","last_name":"Garcia Castillo"},{"last_name":"Lifchitz","id":"d6ab5470-2fb3-11ed-8633-986a9b84edac","first_name":"Hila"},{"last_name":"Le Moan","first_name":"Alan"},{"last_name":"Leder","first_name":"Erica"},{"last_name":"Reeve","first_name":"James"},{"last_name":"Johannesson","first_name":"Kerstin"},{"orcid":"0000-0003-1050-4969","last_name":"Westram","first_name":"Anja M","id":"3C147470-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Butlin","first_name":"Roger"}],"author":[{"last_name":"Stankowski","full_name":"Stankowski, Sean","id":"43161670-5719-11EA-8025-FABC3DDC885E","first_name":"Sean"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.8318995"}],"oa_version":"Published Version","status":"public","department":[{"_id":"NiBa"}],"title":"Data and code for: The genetic architecture of a recent transition to live-bearing in marine snails","article_processing_charge":"No","date_updated":"2025-08-12T09:04:30Z","publisher":"Zenodo","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"ddc":["570"],"citation":{"ama":"Stankowski S. Data and code for: The genetic architecture of a recent transition to live-bearing in marine snails. 2023. doi:<a href=\"https://doi.org/10.5281/ZENODO.8318995\">10.5281/ZENODO.8318995</a>","ista":"Stankowski S. 2023. Data and code for: The genetic architecture of a recent transition to live-bearing in marine snails, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.8318995\">10.5281/ZENODO.8318995</a>.","chicago":"Stankowski, Sean. “Data and Code for: The Genetic Architecture of a Recent Transition to Live-Bearing in Marine Snails.” Zenodo, 2023. <a href=\"https://doi.org/10.5281/ZENODO.8318995\">https://doi.org/10.5281/ZENODO.8318995</a>.","apa":"Stankowski, S. (2023). Data and code for: The genetic architecture of a recent transition to live-bearing in marine snails. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.8318995\">https://doi.org/10.5281/ZENODO.8318995</a>","short":"S. Stankowski, (2023).","ieee":"S. Stankowski, “Data and code for: The genetic architecture of a recent transition to live-bearing in marine snails.” Zenodo, 2023.","mla":"Stankowski, Sean. <i>Data and Code for: The Genetic Architecture of a Recent Transition to Live-Bearing in Marine Snails</i>. Zenodo, 2023, doi:<a href=\"https://doi.org/10.5281/ZENODO.8318995\">10.5281/ZENODO.8318995</a>."},"day":"05","type":"research_data_reference","abstract":[{"lang":"eng","text":"This repository contains the code and VCF files needed to conduct the analyses in our MS. Each folder contains a readMe document explaining the nature of each file and dataset and the results and analyses that they relate to. The same anlaysis code (but not VCF files) is also available at https://github.com/seanstankowski/Littorina_reproductive_mode"}],"month":"09","date_published":"2023-09-05T00:00:00Z","related_material":{"record":[{"status":"for_moderation","id":"14796","relation":"used_in_publication"}]},"doi":"10.5281/ZENODO.8318995","has_accepted_license":"1","_id":"14812","oa":1}]