[{"doi":"10.1007/s00440-018-0835-z","file_date_updated":"2020-07-14T12:46:26Z","article_type":"original","_id":"429","ec_funded":1,"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).\r\n","year":"2019","publist_id":"7394","date_created":"2018-12-11T11:46:25Z","citation":{"ieee":"O. H. Ajanki, L. Erdös, and T. H. Krüger, “Stability of the matrix Dyson equation and random matrices with correlations,” <i>Probability Theory and Related Fields</i>, vol. 173, no. 1–2. Springer, pp. 293–373, 2019.","ama":"Ajanki OH, Erdös L, Krüger TH. Stability of the matrix Dyson equation and random matrices with correlations. <i>Probability Theory and Related Fields</i>. 2019;173(1-2):293–373. doi:<a href=\"https://doi.org/10.1007/s00440-018-0835-z\">10.1007/s00440-018-0835-z</a>","short":"O.H. Ajanki, L. Erdös, T.H. Krüger, Probability Theory and Related Fields 173 (2019) 293–373.","chicago":"Ajanki, Oskari H, László Erdös, and Torben H Krüger. “Stability of the Matrix Dyson Equation and Random Matrices with Correlations.” <i>Probability Theory and Related Fields</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00440-018-0835-z\">https://doi.org/10.1007/s00440-018-0835-z</a>.","mla":"Ajanki, Oskari H., et al. “Stability of the Matrix Dyson Equation and Random Matrices with Correlations.” <i>Probability Theory and Related Fields</i>, vol. 173, no. 1–2, Springer, 2019, pp. 293–373, doi:<a href=\"https://doi.org/10.1007/s00440-018-0835-z\">10.1007/s00440-018-0835-z</a>.","ista":"Ajanki OH, Erdös L, Krüger TH. 2019. Stability of the matrix Dyson equation and random matrices with correlations. Probability Theory and Related Fields. 173(1–2), 293–373.","apa":"Ajanki, O. H., Erdös, L., &#38; Krüger, T. H. (2019). Stability of the matrix Dyson equation and random matrices with correlations. <i>Probability Theory and Related Fields</i>. Springer. <a href=\"https://doi.org/10.1007/s00440-018-0835-z\">https://doi.org/10.1007/s00440-018-0835-z</a>"},"publisher":"Springer","date_published":"2019-02-01T00:00:00Z","department":[{"_id":"LaEr"}],"page":"293–373","quality_controlled":"1","volume":173,"project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"ddc":["510"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"external_id":{"isi":["000459396500007"]},"abstract":[{"lang":"eng","text":"We consider real symmetric or complex hermitian random matrices with correlated entries. We prove local laws for the resolvent and universality of the local eigenvalue statistics in the bulk of the spectrum. The correlations have fast decay but are otherwise of general form. The key novelty is the detailed stability analysis of the corresponding matrix valued Dyson equation whose solution is the deterministic limit of the resolvent."}],"publication_status":"published","publication":"Probability Theory and Related Fields","language":[{"iso":"eng"}],"isi":1,"scopus_import":"1","intvolume":"       173","has_accepted_license":"1","oa":1,"date_updated":"2023-08-24T14:39:00Z","article_processing_charge":"Yes (via OA deal)","issue":"1-2","title":"Stability of the matrix Dyson equation and random matrices with correlations","type":"journal_article","status":"public","month":"02","publication_identifier":{"eissn":["14322064"],"issn":["01788051"]},"oa_version":"Published Version","day":"01","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file":[{"creator":"dernst","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_size":1201840,"file_name":"2018_ProbTheory_Ajanki.pdf","file_id":"5720","checksum":"f9354fa5c71f9edd17132588f0dc7d01","date_created":"2018-12-17T16:12:08Z","date_updated":"2020-07-14T12:46:26Z"}],"author":[{"id":"36F2FB7E-F248-11E8-B48F-1D18A9856A87","last_name":"Ajanki","first_name":"Oskari H","full_name":"Ajanki, Oskari H"},{"first_name":"László","full_name":"Erdös, László","orcid":"0000-0001-5366-9603","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-4821-3297","last_name":"Krüger","id":"3020C786-F248-11E8-B48F-1D18A9856A87","first_name":"Torben H","full_name":"Krüger, Torben H"}]},{"oa_version":"Preprint","day":"01","main_file_link":[{"url":"https://arxiv.org/abs/1604.03382","open_access":"1"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","month":"10","publication_identifier":{"eissn":["1435-9855"]},"author":[{"full_name":"Hausel, Tamas","first_name":"Tamas","last_name":"Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"},{"id":"43D735EE-F248-11E8-B48F-1D18A9856A87","last_name":"Mereb","full_name":"Mereb, Martin","first_name":"Martin"},{"last_name":"Wong","full_name":"Wong, Michael","first_name":"Michael"}],"arxiv":1,"status":"public","type":"journal_article","intvolume":"        21","scopus_import":"1","isi":1,"title":"Arithmetic and representation theory of wild character varieties","oa":1,"date_updated":"2023-08-24T14:24:49Z","article_processing_charge":"No","issue":"10","publication":"Journal of the European Mathematical Society","language":[{"iso":"eng"}],"external_id":{"arxiv":["1604.03382"],"isi":["000480413600002"]},"abstract":[{"lang":"eng","text":"We count points over a finite field on wild character varieties,of Riemann surfaces for singularities with regular semisimple leading term. The new feature in our counting formulas is the appearance of characters of Yokonuma–Hecke algebras. Our result leads to the conjecture that the mixed Hodge polynomials of these character varieties agree with previously conjectured perverse Hodge polynomials of certain twisted parabolic Higgs moduli spaces, indicating the\r\npossibility of a P = W conjecture for a suitable wild Hitchin system."}],"publication_status":"published","department":[{"_id":"TaHa"}],"page":"2995-3052","quality_controlled":"1","volume":21,"publisher":"European Mathematical Society","date_published":"2019-10-01T00:00:00Z","project":[{"call_identifier":"FP7","name":"Arithmetic and physics of Higgs moduli spaces","grant_number":"320593","_id":"25E549F4-B435-11E9-9278-68D0E5697425"}],"ec_funded":1,"citation":{"apa":"Hausel, T., Mereb, M., &#38; Wong, M. (2019). Arithmetic and representation theory of wild character varieties. <i>Journal of the European Mathematical Society</i>. European Mathematical Society. <a href=\"https://doi.org/10.4171/JEMS/896\">https://doi.org/10.4171/JEMS/896</a>","short":"T. Hausel, M. Mereb, M. Wong, Journal of the European Mathematical Society 21 (2019) 2995–3052.","ieee":"T. Hausel, M. Mereb, and M. Wong, “Arithmetic and representation theory of wild character varieties,” <i>Journal of the European Mathematical Society</i>, vol. 21, no. 10. European Mathematical Society, pp. 2995–3052, 2019.","ama":"Hausel T, Mereb M, Wong M. Arithmetic and representation theory of wild character varieties. <i>Journal of the European Mathematical Society</i>. 2019;21(10):2995-3052. doi:<a href=\"https://doi.org/10.4171/JEMS/896\">10.4171/JEMS/896</a>","ista":"Hausel T, Mereb M, Wong M. 2019. Arithmetic and representation theory of wild character varieties. Journal of the European Mathematical Society. 21(10), 2995–3052.","mla":"Hausel, Tamás, et al. “Arithmetic and Representation Theory of Wild Character Varieties.” <i>Journal of the European Mathematical Society</i>, vol. 21, no. 10, European Mathematical Society, 2019, pp. 2995–3052, doi:<a href=\"https://doi.org/10.4171/JEMS/896\">10.4171/JEMS/896</a>.","chicago":"Hausel, Tamás, Martin Mereb, and Michael Wong. “Arithmetic and Representation Theory of Wild Character Varieties.” <i>Journal of the European Mathematical Society</i>. European Mathematical Society, 2019. <a href=\"https://doi.org/10.4171/JEMS/896\">https://doi.org/10.4171/JEMS/896</a>."},"publist_id":"7384","date_created":"2018-12-11T11:46:29Z","year":"2019","doi":"10.4171/JEMS/896","_id":"439","article_type":"original"},{"title":"Tropical formulae for summation over a part of SL(2,Z)","oa":1,"date_updated":"2021-01-12T07:56:46Z","article_processing_charge":"No","issue":"3","scopus_import":1,"intvolume":"         5","language":[{"iso":"eng"}],"publication":"European Journal of Mathematics","author":[{"last_name":"Kalinin","full_name":"Kalinin, Nikita","first_name":"Nikita"},{"first_name":"Mikhail","full_name":"Shkolnikov, Mikhail","id":"35084A62-F248-11E8-B48F-1D18A9856A87","last_name":"Shkolnikov","orcid":"0000-0002-4310-178X"}],"arxiv":1,"oa_version":"Preprint","main_file_link":[{"url":"https://arxiv.org/abs/1711.02089","open_access":"1"}],"day":"15","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","month":"09","publication_identifier":{"eissn":["2199-6768"],"issn":["2199-675X"]},"type":"journal_article","status":"public","publist_id":"7382","citation":{"short":"N. Kalinin, M. Shkolnikov, European Journal of Mathematics 5 (2019) 909–928.","ieee":"N. Kalinin and M. Shkolnikov, “Tropical formulae for summation over a part of SL(2,Z),” <i>European Journal of Mathematics</i>, vol. 5, no. 3. Springer Nature, pp. 909–928, 2019.","ama":"Kalinin N, Shkolnikov M. Tropical formulae for summation over a part of SL(2,Z). <i>European Journal of Mathematics</i>. 2019;5(3):909–928. doi:<a href=\"https://doi.org/10.1007/s40879-018-0218-0\">10.1007/s40879-018-0218-0</a>","chicago":"Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation over a Part of SL(2,Z).” <i>European Journal of Mathematics</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1007/s40879-018-0218-0\">https://doi.org/10.1007/s40879-018-0218-0</a>.","mla":"Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation over a Part of SL(2,Z).” <i>European Journal of Mathematics</i>, vol. 5, no. 3, Springer Nature, 2019, pp. 909–928, doi:<a href=\"https://doi.org/10.1007/s40879-018-0218-0\">10.1007/s40879-018-0218-0</a>.","ista":"Kalinin N, Shkolnikov M. 2019. Tropical formulae for summation over a part of SL(2,Z). European Journal of Mathematics. 5(3), 909–928.","apa":"Kalinin, N., &#38; Shkolnikov, M. (2019). Tropical formulae for summation over a part of SL(2,Z). <i>European Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40879-018-0218-0\">https://doi.org/10.1007/s40879-018-0218-0</a>"},"date_created":"2018-12-11T11:46:29Z","year":"2019","ec_funded":1,"article_type":"original","_id":"441","doi":"10.1007/s40879-018-0218-0","publication_status":"published","external_id":{"arxiv":["1711.02089"]},"project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"}],"page":"909–928","department":[{"_id":"TaHa"}],"quality_controlled":"1","volume":5,"publisher":"Springer Nature","date_published":"2019-09-15T00:00:00Z"},{"language":[{"iso":"eng"}],"publication":"Journal of the London Mathematical Society","title":"The wonderful compactification for quantum groups","date_updated":"2023-09-19T10:13:08Z","oa":1,"issue":"3","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","scopus_import":"1","intvolume":"        99","isi":1,"status":"public","type":"journal_article","author":[{"id":"447491B8-F248-11E8-B48F-1D18A9856A87","last_name":"Ganev","first_name":"Iordan V","full_name":"Ganev, Iordan V"}],"day":"01","oa_version":"Published Version","file":[{"file_id":"7238","checksum":"1be56239b2cd740a0e9a084f773c22f6","file_name":"2019_Wiley_Ganev.pdf","date_created":"2020-01-07T13:31:53Z","date_updated":"2020-07-14T12:46:35Z","creator":"kschuh","relation":"main_file","file_size":431754,"access_level":"open_access","content_type":"application/pdf"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"06","file_date_updated":"2020-07-14T12:46:35Z","_id":"5","doi":"10.1112/jlms.12193","publist_id":"8052","date_created":"2018-12-11T11:44:06Z","citation":{"mla":"Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal of the London Mathematical Society</i>, vol. 99, no. 3, Wiley, 2019, pp. 778–806, doi:<a href=\"https://doi.org/10.1112/jlms.12193\">10.1112/jlms.12193</a>.","chicago":"Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal of the London Mathematical Society</i>. Wiley, 2019. <a href=\"https://doi.org/10.1112/jlms.12193\">https://doi.org/10.1112/jlms.12193</a>.","ista":"Ganev IV. 2019. The wonderful compactification for quantum groups. Journal of the London Mathematical Society. 99(3), 778–806.","ieee":"I. V. Ganev, “The wonderful compactification for quantum groups,” <i>Journal of the London Mathematical Society</i>, vol. 99, no. 3. Wiley, pp. 778–806, 2019.","ama":"Ganev IV. The wonderful compactification for quantum groups. <i>Journal of the London Mathematical Society</i>. 2019;99(3):778-806. doi:<a href=\"https://doi.org/10.1112/jlms.12193\">10.1112/jlms.12193</a>","short":"I.V. Ganev, Journal of the London Mathematical Society 99 (2019) 778–806.","apa":"Ganev, I. V. (2019). The wonderful compactification for quantum groups. <i>Journal of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/jlms.12193\">https://doi.org/10.1112/jlms.12193</a>"},"year":"2019","department":[{"_id":"TaHa"}],"page":"778-806","volume":99,"quality_controlled":"1","publisher":"Wiley","date_published":"2019-06-01T00:00:00Z","publication_status":"published","external_id":{"isi":["000470025900008"]},"abstract":[{"text":"In this paper, we introduce a quantum version of the wonderful compactification of a group as a certain noncommutative projective scheme. Our approach stems from the fact that the wonderful compactification encodes the asymptotics of matrix coefficients, and from its realization as a GIT quotient of the Vinberg semigroup. In order to define the wonderful compactification for a quantum group, we adopt a generalized formalism of Proj categories in the spirit of Artin and Zhang. Key to our construction is a quantum version of the Vinberg semigroup, which we define as a q-deformation of a certain Rees algebra, compatible with a standard Poisson structure. Furthermore, we discuss quantum analogues of the stratification of the wonderful compactification by orbits for a certain group action, and provide explicit computations in the case of SL2.","lang":"eng"}],"ddc":["510"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"}},{"publist_id":"6119","citation":{"apa":"Flandoli, F., Russo, F., &#38; Zanco, G. A. (2018). Infinite-dimensional calculus under weak spatial regularity of the processes. <i>Journal of Theoretical Probability</i>. Springer. <a href=\"https://doi.org/10.1007/s10959-016-0724-2\">https://doi.org/10.1007/s10959-016-0724-2</a>","mla":"Flandoli, Franco, et al. “Infinite-Dimensional Calculus under Weak Spatial Regularity of the Processes.” <i>Journal of Theoretical Probability</i>, vol. 31, no. 2, Springer, 2018, pp. 789–826, doi:<a href=\"https://doi.org/10.1007/s10959-016-0724-2\">10.1007/s10959-016-0724-2</a>.","ista":"Flandoli F, Russo F, Zanco GA. 2018. Infinite-dimensional calculus under weak spatial regularity of the processes. Journal of Theoretical Probability. 31(2), 789–826.","chicago":"Flandoli, Franco, Francesco Russo, and Giovanni A Zanco. “Infinite-Dimensional Calculus under Weak Spatial Regularity of the Processes.” <i>Journal of Theoretical Probability</i>. Springer, 2018. <a href=\"https://doi.org/10.1007/s10959-016-0724-2\">https://doi.org/10.1007/s10959-016-0724-2</a>.","ama":"Flandoli F, Russo F, Zanco GA. Infinite-dimensional calculus under weak spatial regularity of the processes. <i>Journal of Theoretical Probability</i>. 2018;31(2):789-826. doi:<a href=\"https://doi.org/10.1007/s10959-016-0724-2\">10.1007/s10959-016-0724-2</a>","ieee":"F. Flandoli, F. Russo, and G. A. Zanco, “Infinite-dimensional calculus under weak spatial regularity of the processes,” <i>Journal of Theoretical Probability</i>, vol. 31, no. 2. Springer, pp. 789–826, 2018.","short":"F. Flandoli, F. Russo, G.A. Zanco, Journal of Theoretical Probability 31 (2018) 789–826."},"date_created":"2018-12-11T11:50:45Z","year":"2018","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). The second named author benefited partially from the support of the “FMJH Program Gaspard Monge in Optimization and Operations Research” (Project 2014-1607H). He is also grateful for the invitation to the Department of Mathematics of the University of Pisa. The third named author is grateful for the invitation to ENSTA.","_id":"1215","file_date_updated":"2020-07-14T12:44:39Z","doi":"10.1007/s10959-016-0724-2","publication_status":"published","abstract":[{"text":"Two generalizations of Itô formula to infinite-dimensional spaces are given.\r\nThe first one, in Hilbert spaces, extends the classical one by taking advantage of\r\ncancellations when they occur in examples and it is applied to the case of a group\r\ngenerator. The second one, based on the previous one and a limit procedure, is an Itô\r\nformula in a special class of Banach spaces having a product structure with the noise\r\nin a Hilbert component; again the key point is the extension due to a cancellation. This\r\nextension to Banach spaces and in particular the specific cancellation are motivated\r\nby path-dependent Itô calculus.","lang":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["519"],"project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"volume":31,"quality_controlled":"1","department":[{"_id":"JaMa"}],"page":"789-826","date_published":"2018-06-01T00:00:00Z","publisher":"Springer","title":"Infinite-dimensional calculus under weak spatial regularity of the processes","issue":"2","article_processing_charge":"Yes (via OA deal)","date_updated":"2021-01-12T06:49:09Z","pubrep_id":"712","oa":1,"has_accepted_license":"1","intvolume":"        31","scopus_import":1,"language":[{"iso":"eng"}],"publication":"Journal of Theoretical Probability","author":[{"last_name":"Flandoli","first_name":"Franco","full_name":"Flandoli, Franco"},{"last_name":"Russo","first_name":"Francesco","full_name":"Russo, Francesco"},{"last_name":"Zanco","id":"47491882-F248-11E8-B48F-1D18A9856A87","full_name":"Zanco, Giovanni A","first_name":"Giovanni A"}],"file":[{"content_type":"application/pdf","file_size":671125,"relation":"main_file","access_level":"open_access","creator":"system","date_updated":"2020-07-14T12:44:39Z","date_created":"2018-12-12T10:17:13Z","checksum":"47686d58ec21c164540f1a980ff2163f","file_name":"IST-2016-712-v1+1_s10959-016-0724-2.pdf","file_id":"5266"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","day":"01","oa_version":"Published Version","month":"06","status":"public","type":"journal_article"},{"month":"02","day":"15","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"By investigating the in situ chemical and O-isotope compositions of olivine in lightly sintered dust agglomerates from the early Solar System, we constrain their origins and the retention of dust in the protoplanetary disk. The grain sizes of silicates in these agglomeratic olivine (AO) chondrules indicate that the grain sizes of chondrule precursors in the Renazzo-like carbonaceous (CR) chondrites ranged from &lt;1 to 80 µm. We infer this grain size range to be equivalent to the size range for dust in the early Solar System. AO chondrules may contain, but are not solely composed of, recycled fragments of earlier formed chondrules. They also contain 16O-rich olivine related to amoeboid olivine aggregates and represent the best record of chondrule-precursor materials. AO chondrules contain one or more large grains, sometimes similar to FeO-poor (type I) and/or FeO-rich (type II) chondrules, while others contain a type II chondrule core. These morphologies are consistent with particle agglomeration by electrostatic charging of grains during collision, a process that may explain solid agglomeration in the protoplanetary disk in the micrometer size regime. The petrographic, isotopic, and chemical compositions of AO chondrules are consistent with chondrule formation by large-scale shocks, bow shocks, and current sheets. The petrographic, isotopic, and chemical similarities between AO chondrules in CR chondrites and chondrule-like objects from comet 81P/Wild 2 indicate that comets contain AO chondrules. We infer that these AO chondrules likely formed in the inner Solar System and migrated to the comet forming region at least 3 Ma after the formation of the first Solar System solids. Observations made in this study imply that the protoplanetary disk retained a dusty disk at least ∼3.7 Ma after the formation of the first Solar System solids, longer than half of the dusty accretion disks observed around other stars.","lang":"eng"}],"publication_status":"published","author":[{"orcid":"0000-0002-2299-3176","last_name":"Waitukaitis","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","first_name":"Scott R","full_name":"Waitukaitis, Scott R"},{"last_name":"Schrader","full_name":"Schrader, Devin","first_name":"Devin"},{"last_name":"Nagashima","first_name":"Kazuhide","full_name":"Nagashima, Kazuhide"},{"last_name":"Davidson","full_name":"Davidson, Jemma","first_name":"Jemma"},{"first_name":"Timothy","full_name":"Mccoy, Timothy","last_name":"Mccoy"},{"first_name":"Harold","full_name":"Conolly Jr, Harold","last_name":"Conolly Jr"},{"first_name":"Dante","full_name":"Lauretta, Dante","last_name":"Lauretta"}],"publisher":"Elsevier","date_published":"2018-02-15T00:00:00Z","type":"journal_article","status":"public","page":"405 - 421","extern":"1","quality_controlled":"1","volume":223,"intvolume":"       223","date_updated":"2021-01-12T06:49:19Z","year":"2018","title":"The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system","publist_id":"7930","date_created":"2018-12-11T11:44:45Z","citation":{"apa":"Waitukaitis, S. R., Schrader, D., Nagashima, K., Davidson, J., Mccoy, T., Conolly Jr, H., &#38; Lauretta, D. (2018). The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system. <i>Geochimica et Cosmochimica Acta</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.gca.2017.12.014\">https://doi.org/10.1016/j.gca.2017.12.014</a>","mla":"Waitukaitis, Scott R., et al. “The Retention of Dust in Protoplanetary Disks: Evidence from Agglomeration Olivine Chondrules from the Outer Solar System.” <i>Geochimica et Cosmochimica Acta</i>, vol. 223, Elsevier, 2018, pp. 405–21, doi:<a href=\"https://doi.org/10.1016/j.gca.2017.12.014\">10.1016/j.gca.2017.12.014</a>.","ista":"Waitukaitis SR, Schrader D, Nagashima K, Davidson J, Mccoy T, Conolly Jr H, Lauretta D. 2018. The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system. Geochimica et Cosmochimica Acta. 223, 405–421.","chicago":"Waitukaitis, Scott R, Devin Schrader, Kazuhide Nagashima, Jemma Davidson, Timothy Mccoy, Harold Conolly Jr, and Dante Lauretta. “The Retention of Dust in Protoplanetary Disks: Evidence from Agglomeration Olivine Chondrules from the Outer Solar System.” <i>Geochimica et Cosmochimica Acta</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.gca.2017.12.014\">https://doi.org/10.1016/j.gca.2017.12.014</a>.","ieee":"S. R. Waitukaitis <i>et al.</i>, “The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system,” <i>Geochimica et Cosmochimica Acta</i>, vol. 223. Elsevier, pp. 405–421, 2018.","ama":"Waitukaitis SR, Schrader D, Nagashima K, et al. The retention of dust in protoplanetary disks: evidence from agglomeration olivine chondrules from the outer solar system. <i>Geochimica et Cosmochimica Acta</i>. 2018;223:405-421. doi:<a href=\"https://doi.org/10.1016/j.gca.2017.12.014\">10.1016/j.gca.2017.12.014</a>","short":"S.R. Waitukaitis, D. Schrader, K. Nagashima, J. Davidson, T. Mccoy, H. Conolly Jr, D. Lauretta, Geochimica et Cosmochimica Acta 223 (2018) 405–421."},"publication":"Geochimica et Cosmochimica Acta","doi":"10.1016/j.gca.2017.12.014","language":[{"iso":"eng"}],"_id":"124"},{"date_published":"2018-06-01T00:00:00Z","status":"public","type":"journal_article","publisher":"Elsevier","volume":227,"quality_controlled":"1","page":"8 - 16","extern":"1","publication_status":"published","author":[{"last_name":"Cerda","first_name":"Mauricio","full_name":"Cerda, Mauricio"},{"last_name":"Waitukaitis","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2299-3176","first_name":"Scott R","full_name":"Waitukaitis, Scott R"},{"last_name":"Navarro","first_name":"Cristóbal","full_name":"Navarro, Cristóbal"},{"full_name":"Silva, Juan","first_name":"Juan","last_name":"Silva"},{"last_name":"Mujica","full_name":"Mujica, Nicolás","first_name":"Nicolás"},{"last_name":"Hitschfeld","full_name":"Hitschfeld, Nancy","first_name":"Nancy"}],"month":"06","abstract":[{"text":"Many fields of study, including medical imaging, granular physics, colloidal physics, and active matter, require the precise identification and tracking of particle-like objects in images. While many algorithms exist to track particles in diffuse conditions, these often perform poorly when particles are densely packed together—as in, for example, solid-like systems of granular materials. Incorrect particle identification can have significant effects on the calculation of physical quantities, which makes the development of more precise and faster tracking algorithms a worthwhile endeavor. In this work, we present a new tracking algorithm to identify particles in dense systems that is both highly accurate and fast. We demonstrate the efficacy of our approach by analyzing images of dense, solid-state granular media, where we achieve an identification error of 5% in the worst evaluated cases. Going further, we propose a parallelization strategy for our algorithm using a GPU, which results in a speedup of up to 10× when compared to a sequential CPU implementation in C and up to 40× when compared to the reference MATLAB library widely used for particle tracking. Our results extend the capabilities of state-of-the-art particle tracking methods by allowing fast, high-fidelity detection in dense media at high resolutions.","lang":"eng"}],"user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","day":"01","oa_version":"None","_id":"125","language":[{"iso":"eng"}],"publication":"Computer Physics Communications","doi":"10.1016/j.cpc.2018.02.010","year":"2018","date_updated":"2021-01-12T06:49:23Z","citation":{"short":"M. Cerda, S.R. Waitukaitis, C. Navarro, J. Silva, N. Mujica, N. Hitschfeld, Computer Physics Communications 227 (2018) 8–16.","ama":"Cerda M, Waitukaitis SR, Navarro C, Silva J, Mujica N, Hitschfeld N. A high-speed tracking algorithm for dense granular media. <i>Computer Physics Communications</i>. 2018;227:8-16. doi:<a href=\"https://doi.org/10.1016/j.cpc.2018.02.010\">10.1016/j.cpc.2018.02.010</a>","ieee":"M. Cerda, S. R. Waitukaitis, C. Navarro, J. Silva, N. Mujica, and N. Hitschfeld, “A high-speed tracking algorithm for dense granular media,” <i>Computer Physics Communications</i>, vol. 227. Elsevier, pp. 8–16, 2018.","ista":"Cerda M, Waitukaitis SR, Navarro C, Silva J, Mujica N, Hitschfeld N. 2018. A high-speed tracking algorithm for dense granular media. Computer Physics Communications. 227, 8–16.","chicago":"Cerda, Mauricio, Scott R Waitukaitis, Cristóbal Navarro, Juan Silva, Nicolás Mujica, and Nancy Hitschfeld. “A High-Speed Tracking Algorithm for Dense Granular Media.” <i>Computer Physics Communications</i>. Elsevier, 2018. <a href=\"https://doi.org/10.1016/j.cpc.2018.02.010\">https://doi.org/10.1016/j.cpc.2018.02.010</a>.","mla":"Cerda, Mauricio, et al. “A High-Speed Tracking Algorithm for Dense Granular Media.” <i>Computer Physics Communications</i>, vol. 227, Elsevier, 2018, pp. 8–16, doi:<a href=\"https://doi.org/10.1016/j.cpc.2018.02.010\">10.1016/j.cpc.2018.02.010</a>.","apa":"Cerda, M., Waitukaitis, S. R., Navarro, C., Silva, J., Mujica, N., &#38; Hitschfeld, N. (2018). A high-speed tracking algorithm for dense granular media. <i>Computer Physics Communications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cpc.2018.02.010\">https://doi.org/10.1016/j.cpc.2018.02.010</a>"},"date_created":"2018-12-11T11:44:45Z","publist_id":"7928","title":"A high-speed tracking algorithm for dense granular media","intvolume":"       227"},{"article_number":"048001 ","intvolume":"       121","issue":"4","year":"2018","acknowledgement":"We acknowledge funding from the Netherlands Organization for Scientific Research through Grants VICI No. NWO- 680-47-609 (M. v. H. and S. W.) and VENI No. NWO-680- 47-453 (S. W.), and from the German Science Foundation through Grant No. HA8467/1-1 (K. H.).","date_updated":"2021-01-12T06:49:27Z","date_created":"2018-12-11T11:44:46Z","publist_id":"7927","title":"From bouncing to floating: the Leidenfrost effect with hydrogel spheres","citation":{"chicago":"Waitukaitis, Scott R, Kirsten Harth, and Martin Van Hecke. “From Bouncing to Floating: The Leidenfrost Effect with Hydrogel Spheres.” <i>Physical Review Letters</i>. American Physical Society, 2018. <a href=\"https://doi.org/10.1103/PhysRevLett.121.048001\">https://doi.org/10.1103/PhysRevLett.121.048001</a>.","mla":"Waitukaitis, Scott R., et al. “From Bouncing to Floating: The Leidenfrost Effect with Hydrogel Spheres.” <i>Physical Review Letters</i>, vol. 121, no. 4, 048001, American Physical Society, 2018, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.121.048001\">10.1103/PhysRevLett.121.048001</a>.","ista":"Waitukaitis SR, Harth K, Van Hecke M. 2018. From bouncing to floating: the Leidenfrost effect with hydrogel spheres. Physical Review Letters. 121(4), 048001.","ieee":"S. R. Waitukaitis, K. Harth, and M. Van Hecke, “From bouncing to floating: the Leidenfrost effect with hydrogel spheres,” <i>Physical Review Letters</i>, vol. 121, no. 4. American Physical Society, 2018.","ama":"Waitukaitis SR, Harth K, Van Hecke M. From bouncing to floating: the Leidenfrost effect with hydrogel spheres. <i>Physical Review Letters</i>. 2018;121(4). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.121.048001\">10.1103/PhysRevLett.121.048001</a>","short":"S.R. Waitukaitis, K. Harth, M. Van Hecke, Physical Review Letters 121 (2018).","apa":"Waitukaitis, S. R., Harth, K., &#38; Van Hecke, M. (2018). From bouncing to floating: the Leidenfrost effect with hydrogel spheres. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.121.048001\">https://doi.org/10.1103/PhysRevLett.121.048001</a>"},"publication":"Physical Review Letters","doi":"10.1103/PhysRevLett.121.048001","language":[{"iso":"eng"}],"_id":"126","month":"07","abstract":[{"lang":"eng","text":"The Leidenfrost effect occurs when a liquid or stiff sublimable solid near a hot surface creates enough vapor beneath it to lift itself up and float. In contrast, vaporizable soft solids, e.g., hydrogels, have been shown to exhibit persistent bouncing - the elastic Leidenfrost effect. By carefully lowering hydrogel spheres towards a hot surface, we discover that they are also capable of floating. The bounce-to-float transition is controlled by the approach velocity and temperature, analogously to the &quot;dynamic Leidenfrost effect.&quot; For the floating regime, we measure power-law scalings for the gap geometry, which we explain with a model that couples the vaporization rate to the spherical shape. Our results reveal that hydrogels are a promising pathway for controlling floating Leidenfrost objects through shape."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","day":"25","publication_status":"published","author":[{"orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","first_name":"Scott R","full_name":"Waitukaitis, Scott R"},{"last_name":"Harth","first_name":"Kirsten","full_name":"Harth, Kirsten"},{"first_name":"Martin","full_name":"Van Hecke, Martin","last_name":"Van Hecke"}],"status":"public","type":"journal_article","date_published":"2018-07-25T00:00:00Z","publisher":"American Physical Society","volume":121,"quality_controlled":"1","extern":"1"},{"intvolume":"        33","scopus_import":"1","title":"Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology","date_updated":"2023-02-28T11:49:36Z","oa":1,"issue":"2","article_processing_charge":"No","publication":"Hydrological Processes","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1002/hyp.13354","open_access":"1"}],"oa_version":"Published Version","day":"26","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1099-1085"],"issn":["0885-6087"]},"month":"11","author":[{"first_name":"Flavia","full_name":"Burger, Flavia","last_name":"Burger"},{"last_name":"Ayala","first_name":"Alvaro","full_name":"Ayala, Alvaro"},{"last_name":"Farias","first_name":"David","full_name":"Farias, David"},{"last_name":"Shaw","first_name":"Thomas E.","full_name":"Shaw, Thomas E."},{"last_name":"MacDonell","full_name":"MacDonell, Shelley","first_name":"Shelley"},{"last_name":"Brock","first_name":"Ben","full_name":"Brock, Ben"},{"last_name":"McPhee","first_name":"James","full_name":"McPhee, James"},{"last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca"}],"status":"public","type":"journal_article","citation":{"mla":"Burger, Flavia, et al. “Interannual Variability in Glacier Contribution to Runoff from a High‐elevation Andean Catchment: Understanding the Role of Debris Cover in Glacier Hydrology.” <i>Hydrological Processes</i>, vol. 33, no. 2, Wiley, 2018, pp. 214–29, doi:<a href=\"https://doi.org/10.1002/hyp.13354\">10.1002/hyp.13354</a>.","chicago":"Burger, Flavia, Alvaro Ayala, David Farias, Thomas E. Shaw, Shelley MacDonell, Ben Brock, James McPhee, and Francesca Pellicciotti. “Interannual Variability in Glacier Contribution to Runoff from a High‐elevation Andean Catchment: Understanding the Role of Debris Cover in Glacier Hydrology.” <i>Hydrological Processes</i>. Wiley, 2018. <a href=\"https://doi.org/10.1002/hyp.13354\">https://doi.org/10.1002/hyp.13354</a>.","ista":"Burger F, Ayala A, Farias D, Shaw TE, MacDonell S, Brock B, McPhee J, Pellicciotti F. 2018. Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology. Hydrological Processes. 33(2), 214–229.","ama":"Burger F, Ayala A, Farias D, et al. Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology. <i>Hydrological Processes</i>. 2018;33(2):214-229. doi:<a href=\"https://doi.org/10.1002/hyp.13354\">10.1002/hyp.13354</a>","ieee":"F. Burger <i>et al.</i>, “Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology,” <i>Hydrological Processes</i>, vol. 33, no. 2. Wiley, pp. 214–229, 2018.","short":"F. Burger, A. Ayala, D. Farias, T.E. Shaw, S. MacDonell, B. Brock, J. McPhee, F. Pellicciotti, Hydrological Processes 33 (2018) 214–229.","apa":"Burger, F., Ayala, A., Farias, D., Shaw, T. E., MacDonell, S., Brock, B., … Pellicciotti, F. (2018). Interannual variability in glacier contribution to runoff from a high‐elevation Andean catchment: Understanding the role of debris cover in glacier hydrology. <i>Hydrological Processes</i>. Wiley. <a href=\"https://doi.org/10.1002/hyp.13354\">https://doi.org/10.1002/hyp.13354</a>"},"date_created":"2023-02-20T08:13:14Z","keyword":["Water Science and Technology"],"year":"2018","doi":"10.1002/hyp.13354","article_type":"original","_id":"12603","abstract":[{"text":"We present a field-data rich modelling analysis to reconstruct the climatic forcing, glacier response, and runoff generation from a high-elevation catchment in central Chile over the period 2000–2015 to provide insights into the differing contributions of debris-covered and debris-free glaciers under current and future changing climatic conditions. Model simulations with the physically based glacio-hydrological model TOPKAPI-ETH reveal a period of neutral or slightly positive mass balance between 2000 and 2010, followed by a transition to increasingly large annual mass losses, associated with a recent mega drought. Mass losses commence earlier, and are more severe, for a heavily debris-covered glacier, most likely due to its strong dependence on snow avalanche accumulation, which has declined in recent years. Catchment runoff shows a marked decreasing trend over the study period, but with high interannual variability directly linked to winter snow accumulation, and high contribution from ice melt in dry periods and drought conditions. The study demonstrates the importance of incorporating local-scale processes such as snow avalanche accumulation and spatially variable debris thickness, in understanding the responses of different glacier types to climate change. We highlight the increased dependency of runoff from high Andean catchments on the diminishing resource of glacier ice during dry years.","lang":"eng"}],"publication_status":"published","page":"214-229","extern":"1","quality_controlled":"1","volume":33,"publisher":"Wiley","date_published":"2018-11-26T00:00:00Z"},{"publisher":"American Geophysical Union","date_published":"2018-10-18T00:00:00Z","page":"10464-10473","extern":"1","volume":45,"quality_controlled":"1","abstract":[{"text":"Glaciers in the high mountains of Asia provide an important water resource for millions of people. Many of these glaciers are partially covered by rocky debris, which protects the ice from solar radiation and warm air. However, studies have found that the surface of these debris-covered glaciers is actually lowering as fast as glaciers without debris. Water ponded on the surface of the glaciers may be partially responsible, as water can absorb atmospheric energy very efficiently. However, the overall effect of these ponds has not been thoroughly assessed yet. We study a valley in Nepal for which we have extensive weather measurements, and we use a numerical model to calculate the energy absorbed by ponds on the surface of the glaciers over 6 months. As we have not observed each individual pond thoroughly, we run the model 5,000 times with different setups. We find that ponds are extremely important for glacier melt and absorb energy 14 times as quickly as the debris-covered ice. Although the ponds account for 1% of the glacier area covered by rocks, and only 0.3% of the total glacier area, they absorb enough energy to account for one eighth of the whole valley's ice loss.","lang":"eng"}],"publication_status":"published","doi":"10.1029/2018gl079678","article_type":"letter_note","_id":"12604","year":"2018","date_created":"2023-02-20T08:13:18Z","citation":{"apa":"Miles, E. S., Willis, I., Buri, P., Steiner, J. F., Arnold, N. S., &#38; Pellicciotti, F. (2018). Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. <i>Geophysical Research Letters</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2018gl079678\">https://doi.org/10.1029/2018gl079678</a>","ama":"Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. <i>Geophysical Research Letters</i>. 2018;45(19):10464-10473. doi:<a href=\"https://doi.org/10.1029/2018gl079678\">10.1029/2018gl079678</a>","ieee":"E. S. Miles, I. Willis, P. Buri, J. F. Steiner, N. S. Arnold, and F. Pellicciotti, “Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss,” <i>Geophysical Research Letters</i>, vol. 45, no. 19. American Geophysical Union, pp. 10464–10473, 2018.","short":"E.S. Miles, I. Willis, P. Buri, J.F. Steiner, N.S. Arnold, F. Pellicciotti, Geophysical Research Letters 45 (2018) 10464–10473.","chicago":"Miles, Evan S., Ian Willis, Pascal Buri, Jakob F. Steiner, Neil S. Arnold, and Francesca Pellicciotti. “Surface Pond Energy Absorption across Four Himalayan Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” <i>Geophysical Research Letters</i>. American Geophysical Union, 2018. <a href=\"https://doi.org/10.1029/2018gl079678\">https://doi.org/10.1029/2018gl079678</a>.","ista":"Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. 2018. Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss. Geophysical Research Letters. 45(19), 10464–10473.","mla":"Miles, Evan S., et al. “Surface Pond Energy Absorption across Four Himalayan Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” <i>Geophysical Research Letters</i>, vol. 45, no. 19, American Geophysical Union, 2018, pp. 10464–73, doi:<a href=\"https://doi.org/10.1029/2018gl079678\">10.1029/2018gl079678</a>."},"keyword":["General Earth and Planetary Sciences","Geophysics"],"status":"public","type":"journal_article","month":"10","publication_identifier":{"issn":["0094-8276"],"eissn":["1944-8007"]},"day":"18","main_file_link":[{"url":"https://doi.org/10.1029/2018GL079678","open_access":"1"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Miles","first_name":"Evan S.","full_name":"Miles, Evan S."},{"last_name":"Willis","first_name":"Ian","full_name":"Willis, Ian"},{"last_name":"Buri","full_name":"Buri, Pascal","first_name":"Pascal"},{"last_name":"Steiner","full_name":"Steiner, Jakob F.","first_name":"Jakob F."},{"last_name":"Arnold","first_name":"Neil S.","full_name":"Arnold, Neil S."},{"first_name":"Francesca","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"publication":"Geophysical Research Letters","language":[{"iso":"eng"}],"intvolume":"        45","scopus_import":"1","date_updated":"2023-02-28T11:46:48Z","oa":1,"article_processing_charge":"No","issue":"19","title":"Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total catchment ice loss"},{"date_updated":"2023-02-28T11:42:40Z","oa":1,"issue":"10","article_processing_charge":"No","title":"Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d'Arolla, Switzerland","scopus_import":"1","intvolume":"        54","language":[{"iso":"eng"}],"publication":"Water Resources Research","author":[{"last_name":"Clemenzi","first_name":"I.","full_name":"Clemenzi, I."},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti"},{"first_name":"P.","full_name":"Burlando, P.","last_name":"Burlando"}],"month":"06","publication_identifier":{"eissn":["1944-7973"],"issn":["0043-1397"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2017WR021606"}],"day":"07","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","type":"journal_article","year":"2018","citation":{"apa":"Clemenzi, I., Pellicciotti, F., &#38; Burlando, P. (2018). Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland. <i>Water Resources Research</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2017wr021606\">https://doi.org/10.1029/2017wr021606</a>","ista":"Clemenzi I, Pellicciotti F, Burlando P. 2018. Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland. Water Resources Research. 54(10), 7929–7945.","mla":"Clemenzi, I., et al. “Snow Depth Structure, Fractal Behavior, and Interannual Consistency over Haut Glacier d’Arolla, Switzerland.” <i>Water Resources Research</i>, vol. 54, no. 10, American Geophysical Union, 2018, pp. 7929–45, doi:<a href=\"https://doi.org/10.1029/2017wr021606\">10.1029/2017wr021606</a>.","chicago":"Clemenzi, I., Francesca Pellicciotti, and P. Burlando. “Snow Depth Structure, Fractal Behavior, and Interannual Consistency over Haut Glacier d’Arolla, Switzerland.” <i>Water Resources Research</i>. American Geophysical Union, 2018. <a href=\"https://doi.org/10.1029/2017wr021606\">https://doi.org/10.1029/2017wr021606</a>.","short":"I. Clemenzi, F. Pellicciotti, P. Burlando, Water Resources Research 54 (2018) 7929–7945.","ama":"Clemenzi I, Pellicciotti F, Burlando P. Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland. <i>Water Resources Research</i>. 2018;54(10):7929-7945. doi:<a href=\"https://doi.org/10.1029/2017wr021606\">10.1029/2017wr021606</a>","ieee":"I. Clemenzi, F. Pellicciotti, and P. Burlando, “Snow depth structure, fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland,” <i>Water Resources Research</i>, vol. 54, no. 10. American Geophysical Union, pp. 7929–7945, 2018."},"date_created":"2023-02-20T08:13:31Z","keyword":["Water Science and Technology"],"article_type":"original","_id":"12605","doi":"10.1029/2017wr021606","publication_status":"published","abstract":[{"text":"Snow depth patterns over glaciers are controlled by precipitation, snow redistribution due to wind and avalanches, and the exchange of energy with the atmosphere that determines snow ablation. While many studies have advanced the understanding of ablation processes, less is known about winter snow patterns and their variability over glaciers. We analyze snow depth on Haut Glacier d'Arolla, Switzerland, in the two winter seasons 2006–2007 and 2010–2011 to (1) understand whether snow depth over an alpine glacier at the end of the accumulation season exhibits a behavior similar to the one observed on single slopes and vegetated areas; and (2) investigate the snow pattern consistency over the two accumulation seasons. We perform this analysis on a data set of high-resolution lidar-derived snow depth using variograms and fractal parameters. Our first main result is that snow depth patterns on the glacier exhibit a multiscale behavior, with a scale break around 20 m after which the fractal dimension increases, indicating more autocorrelated structure before the scale break than after. Second, this behavior is consistent over the two years, with fractal parameters and their spatial variability almost constant in the two seasons. We also show that snow depth patterns exhibit a distinct behavior in the glacier tongue and the upper catchment, with longer correlation distances on the tongue in the direction of the main winds, suggesting spatial distinctions that are likely induced by different processes and that should be taken into account when extrapolating snow depth from limited samples.","lang":"eng"}],"publisher":"American Geophysical Union","date_published":"2018-06-07T00:00:00Z","page":"7929-7945","extern":"1","volume":54,"quality_controlled":"1"},{"language":[{"iso":"eng"}],"publication":"The Cryosphere","oa":1,"date_updated":"2023-02-28T11:39:26Z","article_processing_charge":"No","issue":"5","title":"Automated detection of ice cliffs within supraglacial debris cover","intvolume":"        12","scopus_import":"1","type":"journal_article","status":"public","author":[{"first_name":"Sam","full_name":"Herreid, Sam","last_name":"Herreid"},{"first_name":"Francesca","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti"}],"publication_identifier":{"issn":["1994-0424"]},"month":"05","oa_version":"Published Version","main_file_link":[{"url":"https://doi.org/10.5194/tc-12-1811-2018","open_access":"1"}],"day":"31","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","_id":"12606","doi":"10.5194/tc-12-1811-2018","year":"2018","citation":{"apa":"Herreid, S., &#38; Pellicciotti, F. (2018). Automated detection of ice cliffs within supraglacial debris cover. <i>The Cryosphere</i>. Copernicus Publications. <a href=\"https://doi.org/10.5194/tc-12-1811-2018\">https://doi.org/10.5194/tc-12-1811-2018</a>","ama":"Herreid S, Pellicciotti F. Automated detection of ice cliffs within supraglacial debris cover. <i>The Cryosphere</i>. 2018;12(5):1811-1829. doi:<a href=\"https://doi.org/10.5194/tc-12-1811-2018\">10.5194/tc-12-1811-2018</a>","ieee":"S. Herreid and F. Pellicciotti, “Automated detection of ice cliffs within supraglacial debris cover,” <i>The Cryosphere</i>, vol. 12, no. 5. Copernicus Publications, pp. 1811–1829, 2018.","short":"S. Herreid, F. Pellicciotti, The Cryosphere 12 (2018) 1811–1829.","chicago":"Herreid, Sam, and Francesca Pellicciotti. “Automated Detection of Ice Cliffs within Supraglacial Debris Cover.” <i>The Cryosphere</i>. Copernicus Publications, 2018. <a href=\"https://doi.org/10.5194/tc-12-1811-2018\">https://doi.org/10.5194/tc-12-1811-2018</a>.","mla":"Herreid, Sam, and Francesca Pellicciotti. “Automated Detection of Ice Cliffs within Supraglacial Debris Cover.” <i>The Cryosphere</i>, vol. 12, no. 5, Copernicus Publications, 2018, pp. 1811–29, doi:<a href=\"https://doi.org/10.5194/tc-12-1811-2018\">10.5194/tc-12-1811-2018</a>.","ista":"Herreid S, Pellicciotti F. 2018. Automated detection of ice cliffs within supraglacial debris cover. The Cryosphere. 12(5), 1811–1829."},"date_created":"2023-02-20T08:13:36Z","keyword":["Earth-Surface Processes","Water Science and Technology"],"publisher":"Copernicus Publications","date_published":"2018-05-31T00:00:00Z","page":"1811-1829","extern":"1","quality_controlled":"1","volume":12,"publication_status":"published","abstract":[{"text":"Ice cliffs within a supraglacial debris cover have been identified as a source for high ablation relative to the surrounding debris-covered area. Due to their small relative size and steep orientation, ice cliffs are difficult to detect using nadir-looking space borne sensors. The method presented here uses surface slopes calculated from digital elevation model (DEM) data to map ice cliff geometry and produce an ice cliff probability map. Surface slope thresholds, which can be sensitive to geographic location and/or data quality, are selected automatically. The method also attempts to include area at the (often narrowing) ends of ice cliffs which could otherwise be neglected due to signal saturation in surface slope data. The method was calibrated in the eastern Alaska Range, Alaska, USA, against a control ice cliff dataset derived from high-resolution visible and thermal data. Using the same input parameter set that performed best in Alaska, the method was tested against ice cliffs manually mapped in the Khumbu Himal, Nepal. Our results suggest the method can accommodate different glaciological settings and different DEM data sources without a data intensive (high-resolution, multi-data source) recalibration.","lang":"eng"}]},{"language":[{"iso":"eng"}],"publication":"PNAS","issue":"17","article_processing_charge":"No","date_updated":"2023-02-28T11:35:18Z","oa":1,"title":"Aspect controls the survival of ice cliffs on debris-covered glaciers","intvolume":"       115","scopus_import":"1","status":"public","type":"journal_article","author":[{"full_name":"Buri, Pascal","first_name":"Pascal","last_name":"Buri"},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","first_name":"Francesca"}],"publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"month":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"url":"https://doi.org/10.1073/pnas.1713892115","open_access":"1"}],"oa_version":"Published Version","day":"09","_id":"12607","article_type":"original","doi":"10.1073/pnas.1713892115","year":"2018","date_created":"2023-02-20T08:13:41Z","citation":{"apa":"Buri, P., &#38; Pellicciotti, F. (2018). Aspect controls the survival of ice cliffs on debris-covered glaciers. <i>PNAS</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1713892115\">https://doi.org/10.1073/pnas.1713892115</a>","ista":"Buri P, Pellicciotti F. 2018. Aspect controls the survival of ice cliffs on debris-covered glaciers. PNAS. 115(17), 4369–4374.","mla":"Buri, Pascal, and Francesca Pellicciotti. “Aspect Controls the Survival of Ice Cliffs on Debris-Covered Glaciers.” <i>PNAS</i>, vol. 115, no. 17, Proceedings of the National Academy of Sciences, 2018, pp. 4369–74, doi:<a href=\"https://doi.org/10.1073/pnas.1713892115\">10.1073/pnas.1713892115</a>.","chicago":"Buri, Pascal, and Francesca Pellicciotti. “Aspect Controls the Survival of Ice Cliffs on Debris-Covered Glaciers.” <i>PNAS</i>. Proceedings of the National Academy of Sciences, 2018. <a href=\"https://doi.org/10.1073/pnas.1713892115\">https://doi.org/10.1073/pnas.1713892115</a>.","short":"P. Buri, F. Pellicciotti, PNAS 115 (2018) 4369–4374.","ama":"Buri P, Pellicciotti F. Aspect controls the survival of ice cliffs on debris-covered glaciers. <i>PNAS</i>. 2018;115(17):4369-4374. doi:<a href=\"https://doi.org/10.1073/pnas.1713892115\">10.1073/pnas.1713892115</a>","ieee":"P. Buri and F. Pellicciotti, “Aspect controls the survival of ice cliffs on debris-covered glaciers,” <i>PNAS</i>, vol. 115, no. 17. Proceedings of the National Academy of Sciences, pp. 4369–4374, 2018."},"date_published":"2018-04-09T00:00:00Z","publisher":"Proceedings of the National Academy of Sciences","quality_controlled":"1","volume":115,"page":"4369-4374","extern":"1","publication_status":"published","abstract":[{"text":"Supraglacial ice cliffs exist on debris-covered glaciers worldwide, but despite their importance as melt hot spots, their life cycle is little understood. Early field observations had advanced a hypothesis of survival of north-facing and disappearance of south-facing cliffs, which is central for predicting the contribution of cliffs to total glacier mass losses. Their role as windows of energy transfer suggests they may explain the anomalously high mass losses of debris-covered glaciers in High Mountain Asia (HMA) despite the insulating debris, currently at the center of a debated controversy. We use a 3D model of cliff evolution coupled to very high-resolution topographic data to demonstrate that ice cliffs facing south (in the Northern Hemisphere) disappear within a few months due to enhanced solar radiation receipts and that aspect is the key control on cliffs evolution. We reproduce continuous flattening of south-facing cliffs, a result of their vertical gradient of incoming solar radiation and sky view factor. Our results establish that only north-facing cliffs are recurrent features and thus stable contributors to the melting of debris-covered glaciers. Satellite observations and mass balance modeling confirms that few south-facing cliffs of small size exist on the glaciers of Langtang, and their contribution to the glacier volume losses is very small (∼1%). This has major implications for the mass balance of HMA debris-covered glaciers as it provides the basis for new parameterizations of cliff evolution and distribution to constrain volume losses in a region where glaciers are highly relevant as water sources for millions of people.","lang":"eng"}]},{"status":"public","date_published":"2018-05-28T00:00:00Z","type":"journal_article","publisher":"Nature Publishing Group","volume":14,"extern":"1","page":"777 - 778","publication_status":"published","author":[{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","full_name":"Waitukaitis, Scott R","first_name":"Scott R"}],"month":"05","abstract":[{"lang":"eng","text":"The ideas of topology are breaking ground in origami-based metamaterials. Experiments now show that certain shapes — doughnuts included — exhibit topological bistability, and can be made to click between different topologically stable states."}],"user_id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","day":"28","oa_version":"None","_id":"127","language":[{"iso":"eng"}],"publication":"Nature Physics","doi":"10.1038/s41567-018-0160-6","year":"2018","issue":"8","date_updated":"2021-01-12T06:49:31Z","date_created":"2018-12-11T11:44:46Z","citation":{"mla":"Waitukaitis, Scott R. “Clicks for Doughnuts.” <i>Nature Physics</i>, vol. 14, no. 8, Nature Publishing Group, 2018, pp. 777–78, doi:<a href=\"https://doi.org/10.1038/s41567-018-0160-6\">10.1038/s41567-018-0160-6</a>.","ista":"Waitukaitis SR. 2018. Clicks for doughnuts. Nature Physics. 14(8), 777–778.","chicago":"Waitukaitis, Scott R. “Clicks for Doughnuts.” <i>Nature Physics</i>. Nature Publishing Group, 2018. <a href=\"https://doi.org/10.1038/s41567-018-0160-6\">https://doi.org/10.1038/s41567-018-0160-6</a>.","short":"S.R. Waitukaitis, Nature Physics 14 (2018) 777–778.","ieee":"S. R. Waitukaitis, “Clicks for doughnuts,” <i>Nature Physics</i>, vol. 14, no. 8. Nature Publishing Group, pp. 777–778, 2018.","ama":"Waitukaitis SR. Clicks for doughnuts. <i>Nature Physics</i>. 2018;14(8):777-778. doi:<a href=\"https://doi.org/10.1038/s41567-018-0160-6\">10.1038/s41567-018-0160-6</a>","apa":"Waitukaitis, S. R. (2018). Clicks for doughnuts. <i>Nature Physics</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41567-018-0160-6\">https://doi.org/10.1038/s41567-018-0160-6</a>"},"publist_id":"7926","title":"Clicks for doughnuts","intvolume":"        14"},{"author":[{"first_name":"Thomas","full_name":"Alderighi, Thomas","last_name":"Alderighi"},{"last_name":"Malomo","full_name":"Malomo, Luigi","first_name":"Luigi"},{"last_name":"Giorgi","first_name":"Daniela","full_name":"Giorgi, Daniela"},{"first_name":"Nico","full_name":"Pietroni, Nico","last_name":"Pietroni"},{"orcid":"0000-0001-6511-9385","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd","full_name":"Bickel, Bernd"},{"full_name":"Cignoni, Paolo","first_name":"Paolo","last_name":"Cignoni"}],"month":"08","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","file":[{"file_name":"IST-2018-1038-v1+1_metamolds_authorversion.pdf","checksum":"61d46273dca4de626accef1d17a0aaad","file_id":"5374","date_updated":"2020-07-14T12:44:43Z","date_created":"2018-12-12T10:18:52Z","creator":"system","relation":"main_file","content_type":"application/pdf","access_level":"open_access","file_size":91939066}],"oa_version":"Submitted Version","day":"04","type":"journal_article","status":"public","article_processing_charge":"No","issue":"4","pubrep_id":"1038","date_updated":"2023-09-13T08:56:07Z","oa":1,"title":"Metamolds: Computational design of silicone molds","isi":1,"has_accepted_license":"1","intvolume":"        37","scopus_import":"1","language":[{"iso":"eng"}],"publication":"ACM Trans. Graph.","publication_status":"published","ddc":["004"],"abstract":[{"text":"We propose a new method for fabricating digital objects through reusable silicone molds. Molds are generated by casting liquid silicone into custom 3D printed containers called metamolds. Metamolds automatically define the cuts that are needed to extract the cast object from the silicone mold. The shape of metamolds is designed through a novel segmentation technique, which takes into account both geometric and topological constraints involved in the process of mold casting. Our technique is simple, does not require changing the shape or topology of the input objects, and only requires off-the- shelf materials and technologies. We successfully tested our method on a set of challenging examples with complex shapes and rich geometric detail. © 2018 Association for Computing Machinery.","lang":"eng"}],"external_id":{"isi":["000448185000097"]},"project":[{"grant_number":"715767","_id":"24F9549A-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling"}],"date_published":"2018-08-04T00:00:00Z","publisher":"ACM","quality_controlled":"1","volume":37,"department":[{"_id":"BeBi"}],"year":"2018","publist_id":"8043","date_created":"2018-12-11T11:44:09Z","citation":{"short":"T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, P. Cignoni, ACM Trans. Graph. 37 (2018).","ieee":"T. Alderighi, L. Malomo, D. Giorgi, N. Pietroni, B. Bickel, and P. Cignoni, “Metamolds: Computational design of silicone molds,” <i>ACM Trans. Graph.</i>, vol. 37, no. 4. ACM, 2018.","ama":"Alderighi T, Malomo L, Giorgi D, Pietroni N, Bickel B, Cignoni P. Metamolds: Computational design of silicone molds. <i>ACM Trans Graph</i>. 2018;37(4). doi:<a href=\"https://doi.org/10.1145/3197517.3201381\">10.1145/3197517.3201381</a>","ista":"Alderighi T, Malomo L, Giorgi D, Pietroni N, Bickel B, Cignoni P. 2018. Metamolds: Computational design of silicone molds. ACM Trans. Graph. 37(4), 136.","mla":"Alderighi, Thomas, et al. “Metamolds: Computational Design of Silicone Molds.” <i>ACM Trans. Graph.</i>, vol. 37, no. 4, 136, ACM, 2018, doi:<a href=\"https://doi.org/10.1145/3197517.3201381\">10.1145/3197517.3201381</a>.","chicago":"Alderighi, Thomas, Luigi Malomo, Daniela Giorgi, Nico Pietroni, Bernd Bickel, and Paolo Cignoni. “Metamolds: Computational Design of Silicone Molds.” <i>ACM Trans. Graph.</i> ACM, 2018. <a href=\"https://doi.org/10.1145/3197517.3201381\">https://doi.org/10.1145/3197517.3201381</a>.","apa":"Alderighi, T., Malomo, L., Giorgi, D., Pietroni, N., Bickel, B., &#38; Cignoni, P. (2018). Metamolds: Computational design of silicone molds. <i>ACM Trans. Graph.</i> ACM. <a href=\"https://doi.org/10.1145/3197517.3201381\">https://doi.org/10.1145/3197517.3201381</a>"},"article_number":"136","related_material":{"link":[{"url":"https://ist.ac.at/en/news/metamolds-molding-a-mold/","description":"News on IST Homepage","relation":"press_release"}]},"ec_funded":1,"_id":"13","file_date_updated":"2020-07-14T12:44:43Z","doi":"10.1145/3197517.3201381"},{"oa":1,"date_updated":"2023-10-17T11:50:04Z","year":"2018","article_processing_charge":"No","date_created":"2023-05-23T13:24:51Z","title":"Social network plasticity decreases disease transmission in a eusocial insect","citation":{"chicago":"Stroeymeyt, Nathalie, Anna V Grasse, Alessandro Crespi, Danielle Mersch, Sylvia Cremer, and Laurent Keller. “Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect.” Zenodo, 2018. <a href=\"https://doi.org/10.5281/ZENODO.1322669\">https://doi.org/10.5281/ZENODO.1322669</a>.","mla":"Stroeymeyt, Nathalie, et al. <i>Social Network Plasticity Decreases Disease Transmission in a Eusocial Insect</i>. Zenodo, 2018, doi:<a href=\"https://doi.org/10.5281/ZENODO.1322669\">10.5281/ZENODO.1322669</a>.","ista":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. 2018. Social network plasticity decreases disease transmission in a eusocial insect, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.1322669\">10.5281/ZENODO.1322669</a>.","ama":"Stroeymeyt N, Grasse AV, Crespi A, Mersch D, Cremer S, Keller L. Social network plasticity decreases disease transmission in a eusocial insect. 2018. doi:<a href=\"https://doi.org/10.5281/ZENODO.1322669\">10.5281/ZENODO.1322669</a>","ieee":"N. Stroeymeyt, A. V. Grasse, A. Crespi, D. Mersch, S. Cremer, and L. Keller, “Social network plasticity decreases disease transmission in a eusocial insect.” Zenodo, 2018.","short":"N. Stroeymeyt, A.V. Grasse, A. Crespi, D. Mersch, S. Cremer, L. Keller, (2018).","apa":"Stroeymeyt, N., Grasse, A. V., Crespi, A., Mersch, D., Cremer, S., &#38; Keller, L. (2018). Social network plasticity decreases disease transmission in a eusocial insect. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.1322669\">https://doi.org/10.5281/ZENODO.1322669</a>"},"related_material":{"record":[{"relation":"used_in_publication","id":"7","status":"public"}]},"_id":"13055","doi":"10.5281/ZENODO.1322669","author":[{"first_name":"Nathalie","full_name":"Stroeymeyt, Nathalie","last_name":"Stroeymeyt"},{"id":"406F989C-F248-11E8-B48F-1D18A9856A87","last_name":"Grasse","full_name":"Grasse, Anna V","first_name":"Anna V"},{"full_name":"Crespi, Alessandro","first_name":"Alessandro","last_name":"Crespi"},{"last_name":"Mersch","full_name":"Mersch, Danielle","first_name":"Danielle"},{"first_name":"Sylvia","full_name":"Cremer, Sylvia","last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868"},{"full_name":"Keller, Laurent","first_name":"Laurent","last_name":"Keller"}],"ddc":["570"],"month":"10","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.1480665"}],"day":"23","abstract":[{"text":"Dataset for manuscript 'Social network plasticity decreases disease transmission in a eusocial insect'\r\nCompared to previous versions: - raw image files added\r\n                                                     - correction of URLs within README.txt file\r\n","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Zenodo","date_published":"2018-10-23T00:00:00Z","status":"public","type":"research_data_reference","department":[{"_id":"SyCr"}]},{"publisher":"Zenodo","type":"research_data_reference","date_published":"2018-12-07T00:00:00Z","status":"public","department":[{"_id":"FyKo"}],"ddc":["570"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"12","day":"07","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.3271452","open_access":"1"}],"oa_version":"Published Version","abstract":[{"text":"This dataset contains a GitHub repository containing all the data, analysis, Nextflow workflows and Jupyter notebooks to replicate the manuscript titled \"Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method\".\r\nIt also contains the Multiple Sequence Alignments (MSAs) generated and well as the main figures and tables from the manuscript.\r\nThe repository is also available at GitHub (https://github.com/cbcrg/dpa-analysis) release `v1.2`.\r\nFor details on how to use the regressive alignment algorithm, see the T-Coffee software suite (https://github.com/cbcrg/tcoffee).","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Garriga","full_name":"Garriga, Edgar","first_name":"Edgar"},{"last_name":"di Tommaso","first_name":"Paolo","full_name":"di Tommaso, Paolo"},{"last_name":"Magis","first_name":"Cedrik","full_name":"Magis, Cedrik"},{"first_name":"Ionas","full_name":"Erb, Ionas","last_name":"Erb"},{"last_name":"Mansouri","first_name":"Leila","full_name":"Mansouri, Leila"},{"last_name":"Baltzis","first_name":"Athanasios","full_name":"Baltzis, Athanasios"},{"full_name":"Laayouni, Hafid","first_name":"Hafid","last_name":"Laayouni"},{"last_name":"Kondrashov","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","full_name":"Kondrashov, Fyodor","first_name":"Fyodor"},{"full_name":"Floden, Evan","first_name":"Evan","last_name":"Floden"},{"full_name":"Notredame, Cedric","first_name":"Cedric","last_name":"Notredame"}],"doi":"10.5281/ZENODO.2025846","_id":"13059","related_material":{"record":[{"id":"7181","relation":"used_in_publication","status":"public"}]},"date_updated":"2023-09-06T14:32:51Z","oa":1,"article_processing_charge":"No","year":"2018","title":"Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method","date_created":"2023-05-23T16:08:20Z","citation":{"apa":"Garriga, E., di Tommaso, P., Magis, C., Erb, I., Mansouri, L., Baltzis, A., … Notredame, C. (2018). Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.2025846\">https://doi.org/10.5281/ZENODO.2025846</a>","ista":"Garriga E, di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Laayouni H, Kondrashov F, Floden E, Notredame C. 2018. Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.2025846\">10.5281/ZENODO.2025846</a>.","mla":"Garriga, Edgar, et al. <i>Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method</i>. Zenodo, 2018, doi:<a href=\"https://doi.org/10.5281/ZENODO.2025846\">10.5281/ZENODO.2025846</a>.","chicago":"Garriga, Edgar, Paolo di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, and Cedric Notredame. “Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf Regressive Method.” Zenodo, 2018. <a href=\"https://doi.org/10.5281/ZENODO.2025846\">https://doi.org/10.5281/ZENODO.2025846</a>.","short":"E. Garriga, P. di Tommaso, C. Magis, I. Erb, L. Mansouri, A. Baltzis, H. Laayouni, F. Kondrashov, E. Floden, C. Notredame, (2018).","ieee":"E. Garriga <i>et al.</i>, “Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method.” Zenodo, 2018.","ama":"Garriga E, di Tommaso P, Magis C, et al. Fast and accurate large multiple sequence alignments with a root-to-leaf regressive method. 2018. doi:<a href=\"https://doi.org/10.5281/ZENODO.2025846\">10.5281/ZENODO.2025846</a>"}},{"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["570"],"abstract":[{"text":"XY systems usually show chromosome-wide compensation of X-linked genes, while in many ZW systems, compensation is restricted to a minority of dosage-sensitive genes. Why such differences arose is still unclear. Here, we combine comparative genomics, transcriptomics and proteomics to obtain a complete overview of the evolution of gene dosage on the Z-chromosome of Schistosoma parasites. We compare the Z-chromosome gene content of African (Schistosoma mansoni and S. haematobium) and Asian (S. japonicum) schistosomes and describe lineage-specific evolutionary strata. We use these to assess gene expression evolution following sex-linkage. The resulting patterns suggest a reduction in expression of Z-linked genes in females, combined with upregulation of the Z in both sexes, in line with the first step of Ohno’s classic model of dosage compensation evolution. Quantitative proteomics suggest that post-transcriptional mechanisms do not play a major role in balancing the expression of Z-linked genes. ","lang":"eng"}],"external_id":{"isi":["000441388200001"]},"publication_status":"published","date_published":"2018-08-13T00:00:00Z","publisher":"eLife Sciences Publications","volume":7,"quality_controlled":"1","department":[{"_id":"BeVi"}],"project":[{"_id":"250ED89C-B435-11E9-9278-68D0E5697425","grant_number":"P28842-B22","name":"Sex chromosome evolution under male- and female- heterogamety","call_identifier":"FWF"}],"related_material":{"record":[{"id":"5586","relation":"popular_science","status":"public"}]},"article_number":"e35684","year":"2018","acknowledgement":"We are grateful to Lu Dabing (Soochow University, Suzhou, China) for providing Schistosoma japonicum samples, to Ariana Macon (IST Austria) and Georgette Stovall (JLU Giessen) for technical assistance, to IT support at IST Austria for providing optimal environment to bioinformatic analyses, and to the Vicoso lab for comments on the manuscript.","citation":{"short":"M.A.L. Picard, C. Cosseau, S. Ferré, T. Quack, C. Grevelding, Y. Couté, B. Vicoso, ELife 7 (2018).","ama":"Picard MAL, Cosseau C, Ferré S, et al. Evolution of gene dosage on the Z-chromosome of schistosome parasites. <i>eLife</i>. 2018;7. doi:<a href=\"https://doi.org/10.7554/eLife.35684\">10.7554/eLife.35684</a>","ieee":"M. A. L. Picard <i>et al.</i>, “Evolution of gene dosage on the Z-chromosome of schistosome parasites,” <i>eLife</i>, vol. 7. eLife Sciences Publications, 2018.","ista":"Picard MAL, Cosseau C, Ferré S, Quack T, Grevelding C, Couté Y, Vicoso B. 2018. Evolution of gene dosage on the Z-chromosome of schistosome parasites. eLife. 7, e35684.","mla":"Picard, Marion A. L., et al. “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites.” <i>ELife</i>, vol. 7, e35684, eLife Sciences Publications, 2018, doi:<a href=\"https://doi.org/10.7554/eLife.35684\">10.7554/eLife.35684</a>.","chicago":"Picard, Marion A L, Celine Cosseau, Sabrina Ferré, Thomas Quack, Christoph Grevelding, Yohann Couté, and Beatriz Vicoso. “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites.” <i>ELife</i>. eLife Sciences Publications, 2018. <a href=\"https://doi.org/10.7554/eLife.35684\">https://doi.org/10.7554/eLife.35684</a>.","apa":"Picard, M. A. L., Cosseau, C., Ferré, S., Quack, T., Grevelding, C., Couté, Y., &#38; Vicoso, B. (2018). Evolution of gene dosage on the Z-chromosome of schistosome parasites. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/eLife.35684\">https://doi.org/10.7554/eLife.35684</a>"},"publist_id":"7792","date_created":"2018-12-11T11:44:47Z","doi":"10.7554/eLife.35684","article_type":"original","_id":"131","file_date_updated":"2020-07-14T12:44:43Z","month":"08","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","file":[{"file_size":3158125,"access_level":"open_access","relation":"main_file","content_type":"application/pdf","creator":"dernst","date_created":"2018-12-17T11:55:05Z","date_updated":"2020-07-14T12:44:43Z","checksum":"d6331d4385b1fffd6b47b45d5949d841","file_id":"5695","file_name":"2018_eLife_Picard.pdf"}],"day":"13","oa_version":"Published Version","author":[{"first_name":"Marion A","full_name":"Picard, Marion A","orcid":"0000-0002-8101-2518","last_name":"Picard","id":"2C921A7A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cosseau, Celine","first_name":"Celine","last_name":"Cosseau"},{"full_name":"Ferré, Sabrina","first_name":"Sabrina","last_name":"Ferré"},{"first_name":"Thomas","full_name":"Quack, Thomas","last_name":"Quack"},{"full_name":"Grevelding, Christoph","first_name":"Christoph","last_name":"Grevelding"},{"last_name":"Couté","first_name":"Yohann","full_name":"Couté, Yohann"},{"first_name":"Beatriz","full_name":"Vicoso, Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso","orcid":"0000-0002-4579-8306"}],"type":"journal_article","status":"public","isi":1,"scopus_import":"1","intvolume":"         7","has_accepted_license":"1","article_processing_charge":"No","date_updated":"2024-02-21T13:45:12Z","oa":1,"title":"Evolution of gene dosage on the Z-chromosome of schistosome parasites","publication":"eLife","language":[{"iso":"eng"}]},{"title":"Defining lineage potential and fate behavior of precursors during pancreas development","article_processing_charge":"No","issue":"3","oa":1,"date_updated":"2023-09-11T12:52:41Z","has_accepted_license":"1","scopus_import":"1","intvolume":"        46","isi":1,"language":[{"iso":"eng"}],"publication":"Developmental Cell","author":[{"last_name":"Sznurkowska","first_name":"Magdalena","full_name":"Sznurkowska, Magdalena"},{"first_name":"Edouard B","full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","last_name":"Hannezo"},{"full_name":"Azzarelli, Roberta","first_name":"Roberta","last_name":"Azzarelli"},{"last_name":"Rulands","first_name":"Steffen","full_name":"Rulands, Steffen"},{"first_name":"Sonia","full_name":"Nestorowa, Sonia","last_name":"Nestorowa"},{"first_name":"Christopher","full_name":"Hindley, Christopher","last_name":"Hindley"},{"last_name":"Nichols","full_name":"Nichols, Jennifer","first_name":"Jennifer"},{"last_name":"Göttgens","full_name":"Göttgens, Berthold","first_name":"Berthold"},{"full_name":"Huch, Meritxell","first_name":"Meritxell","last_name":"Huch"},{"last_name":"Philpott","first_name":"Anna","full_name":"Philpott, Anna"},{"full_name":"Simons, Benjamin","first_name":"Benjamin","last_name":"Simons"}],"file":[{"date_created":"2018-12-17T10:49:49Z","date_updated":"2020-07-14T12:44:43Z","file_name":"2018_DevelopmentalCell_Sznurkowska.pdf","checksum":"78d2062b9e3c3b90fe71545aeb6d2f65","file_id":"5694","content_type":"application/pdf","relation":"main_file","file_size":8948384,"access_level":"open_access","creator":"dernst"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Published Version","day":"06","month":"08","status":"public","type":"journal_article","date_created":"2018-12-11T11:44:48Z","citation":{"apa":"Sznurkowska, M., Hannezo, E. B., Azzarelli, R., Rulands, S., Nestorowa, S., Hindley, C., … Simons, B. (2018). Defining lineage potential and fate behavior of precursors during pancreas development. <i>Developmental Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">https://doi.org/10.1016/j.devcel.2018.06.028</a>","short":"M. Sznurkowska, E.B. Hannezo, R. Azzarelli, S. Rulands, S. Nestorowa, C. Hindley, J. Nichols, B. Göttgens, M. Huch, A. Philpott, B. Simons, Developmental Cell 46 (2018) 360–375.","ama":"Sznurkowska M, Hannezo EB, Azzarelli R, et al. Defining lineage potential and fate behavior of precursors during pancreas development. <i>Developmental Cell</i>. 2018;46(3):360-375. doi:<a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">10.1016/j.devcel.2018.06.028</a>","ieee":"M. Sznurkowska <i>et al.</i>, “Defining lineage potential and fate behavior of precursors during pancreas development,” <i>Developmental Cell</i>, vol. 46, no. 3. Cell Press, pp. 360–375, 2018.","ista":"Sznurkowska M, Hannezo EB, Azzarelli R, Rulands S, Nestorowa S, Hindley C, Nichols J, Göttgens B, Huch M, Philpott A, Simons B. 2018. Defining lineage potential and fate behavior of precursors during pancreas development. Developmental Cell. 46(3), 360–375.","chicago":"Sznurkowska, Magdalena, Edouard B Hannezo, Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, Christopher Hindley, Jennifer Nichols, et al. “Defining Lineage Potential and Fate Behavior of Precursors during Pancreas Development.” <i>Developmental Cell</i>. Cell Press, 2018. <a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">https://doi.org/10.1016/j.devcel.2018.06.028</a>.","mla":"Sznurkowska, Magdalena, et al. “Defining Lineage Potential and Fate Behavior of Precursors during Pancreas Development.” <i>Developmental Cell</i>, vol. 46, no. 3, Cell Press, 2018, pp. 360–75, doi:<a href=\"https://doi.org/10.1016/j.devcel.2018.06.028\">10.1016/j.devcel.2018.06.028</a>."},"publist_id":"7791","year":"2018","acknowledgement":"E.H. is funded by a Junior Research Fellowship from Trinity College, Cam-bridge, a Sir Henry Wellcome Fellowship from the Wellcome Trust, and theBettencourt-Schueller Young Researcher Prize for support.","_id":"132","article_type":"original","file_date_updated":"2020-07-14T12:44:43Z","doi":"10.1016/j.devcel.2018.06.028","publication_status":"published","abstract":[{"text":"Pancreas development involves a coordinated process in which an early phase of cell segregation is followed by a longer phase of lineage restriction, expansion, and tissue remodeling. By combining clonal tracing and whole-mount reconstruction with proliferation kinetics and single-cell transcriptional profiling, we define the functional basis of pancreas morphogenesis. We show that the large-scale organization of mouse pancreas can be traced to the activity of self-renewing precursors positioned at the termini of growing ducts, which act collectively to drive serial rounds of stochastic ductal bifurcation balanced by termination. During this phase of branching morphogenesis, multipotent precursors become progressively fate-restricted, giving rise to self-renewing acinar-committed precursors that are conveyed with growing ducts, as well as ductal progenitors that expand the trailing ducts and give rise to delaminating endocrine cells. These findings define quantitatively how the functional behavior and lineage progression of precursor pools determine the large-scale patterning of pancreatic sub-compartments.","lang":"eng"}],"external_id":{"isi":["000441327300012"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["570"],"quality_controlled":"1","volume":46,"page":"360 - 375","department":[{"_id":"EdHa"}],"date_published":"2018-08-06T00:00:00Z","publisher":"Cell Press"},{"doi":"10.1021/acsami.8b08471","article_type":"original","_id":"13255","citation":{"apa":"Kretschmer, S., Maslov, M., Ghaderzadeh, S., Ghorbani-Asl, M., Hlawacek, G., &#38; Krasheninnikov, A. V. (2018). Supported two-dimensional materials under ion irradiation: The substrate governs defect production. <i>ACS Applied Materials &#38; Interfaces</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsami.8b08471\">https://doi.org/10.1021/acsami.8b08471</a>","mla":"Kretschmer, Silvan, et al. “Supported Two-Dimensional Materials under Ion Irradiation: The Substrate Governs Defect Production.” <i>ACS Applied Materials &#38; Interfaces</i>, vol. 10, no. 36, American Chemical Society, 2018, pp. 30827–36, doi:<a href=\"https://doi.org/10.1021/acsami.8b08471\">10.1021/acsami.8b08471</a>.","ista":"Kretschmer S, Maslov M, Ghaderzadeh S, Ghorbani-Asl M, Hlawacek G, Krasheninnikov AV. 2018. Supported two-dimensional materials under ion irradiation: The substrate governs defect production. ACS Applied Materials &#38; Interfaces. 10(36), 30827–30836.","chicago":"Kretschmer, Silvan, Mikhail Maslov, Sadegh Ghaderzadeh, Mahdi Ghorbani-Asl, Gregor Hlawacek, and Arkady V. Krasheninnikov. “Supported Two-Dimensional Materials under Ion Irradiation: The Substrate Governs Defect Production.” <i>ACS Applied Materials &#38; Interfaces</i>. American Chemical Society, 2018. <a href=\"https://doi.org/10.1021/acsami.8b08471\">https://doi.org/10.1021/acsami.8b08471</a>.","short":"S. Kretschmer, M. Maslov, S. Ghaderzadeh, M. Ghorbani-Asl, G. Hlawacek, A.V. Krasheninnikov, ACS Applied Materials &#38; Interfaces 10 (2018) 30827–30836.","ama":"Kretschmer S, Maslov M, Ghaderzadeh S, Ghorbani-Asl M, Hlawacek G, Krasheninnikov AV. Supported two-dimensional materials under ion irradiation: The substrate governs defect production. <i>ACS Applied Materials &#38; Interfaces</i>. 2018;10(36):30827-30836. doi:<a href=\"https://doi.org/10.1021/acsami.8b08471\">10.1021/acsami.8b08471</a>","ieee":"S. Kretschmer, M. Maslov, S. Ghaderzadeh, M. Ghorbani-Asl, G. Hlawacek, and A. V. Krasheninnikov, “Supported two-dimensional materials under ion irradiation: The substrate governs defect production,” <i>ACS Applied Materials &#38; Interfaces</i>, vol. 10, no. 36. American Chemical Society, pp. 30827–30836, 2018."},"date_created":"2023-07-21T11:43:00Z","keyword":["General Materials Science"],"year":"2018","extern":"1","page":"30827-30836","volume":10,"quality_controlled":"1","publisher":"American Chemical Society","date_published":"2018-08-17T00:00:00Z","external_id":{"pmid":["30117320"]},"abstract":[{"lang":"eng","text":"Focused ion beams perfectly suit for patterning two-dimensional (2D) materials, but the optimization of irradiation parameters requires full microscopic understanding of defect production mechanisms. In contrast to freestanding 2D systems, the details of damage creation in supported 2D materials are not fully understood, whereas the majority of experiments have been carried out for 2D targets deposited on substrates. Here, we suggest a universal and computationally efficient scheme to model the irradiation of supported 2D materials, which combines analytical potential molecular dynamics with Monte Carlo simulations and makes it possible to independently assess the contributions to the damage from backscattered ions and atoms sputtered from the substrate. Using the scheme, we study the defect production in graphene and MoS2 sheets, which are the two most important and wide-spread 2D materials, deposited on a SiO2 substrate. For helium and neon ions with a wide range of initial ion energies including those used in a commercial helium ion microscope (HIM), we demonstrate that depending on the ion energy and mass, the defect production in 2D systems can be dominated by backscattered ions and sputtered substrate atoms rather than by the direct ion impacts and that the amount of damage in 2D materials heavily depends on whether a substrate is present or not. We also study the factors which limit the spatial resolution of the patterning process. Our results, which agree well with the available experimental data, provide not only insights into defect production but also quantitative information, which can be used for the minimization of damage during imaging in HIM or optimization of the patterning process."}],"publication_status":"published","publication":"ACS Applied Materials & Interfaces","language":[{"iso":"eng"}],"intvolume":"        10","title":"Supported two-dimensional materials under ion irradiation: The substrate governs defect production","date_updated":"2023-08-01T07:18:30Z","issue":"36","article_processing_charge":"No","pmid":1,"type":"journal_article","status":"public","oa_version":"None","day":"17","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"08","publication_identifier":{"issn":["1944-8244","1944-8252"]},"author":[{"last_name":"Kretschmer","full_name":"Kretschmer, Silvan","first_name":"Silvan"},{"first_name":"Mikhail","full_name":"Maslov, Mikhail","orcid":"0000-0003-4074-2570","last_name":"Maslov","id":"2E65BB0E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Ghaderzadeh, Sadegh","first_name":"Sadegh","last_name":"Ghaderzadeh"},{"last_name":"Ghorbani-Asl","first_name":"Mahdi","full_name":"Ghorbani-Asl, Mahdi"},{"first_name":"Gregor","full_name":"Hlawacek, Gregor","last_name":"Hlawacek"},{"first_name":"Arkady V.","full_name":"Krasheninnikov, Arkady V.","last_name":"Krasheninnikov"}]}]