[{"citation":{"ama":"Hledik M, Sokolowski TR, Tkačik G. A tight upper bound on mutual information. In: <i>IEEE Information Theory Workshop, ITW 2019</i>. IEEE; 2019. doi:<a href=\"https://doi.org/10.1109/ITW44776.2019.8989292\">10.1109/ITW44776.2019.8989292</a>","short":"M. Hledik, T.R. Sokolowski, G. Tkačik, in:, IEEE Information Theory Workshop, ITW 2019, IEEE, 2019.","chicago":"Hledik, Michal, Thomas R Sokolowski, and Gašper Tkačik. “A Tight Upper Bound on Mutual Information.” In <i>IEEE Information Theory Workshop, ITW 2019</i>. IEEE, 2019. <a href=\"https://doi.org/10.1109/ITW44776.2019.8989292\">https://doi.org/10.1109/ITW44776.2019.8989292</a>.","mla":"Hledik, Michal, et al. “A Tight Upper Bound on Mutual Information.” <i>IEEE Information Theory Workshop, ITW 2019</i>, 8989292, IEEE, 2019, doi:<a href=\"https://doi.org/10.1109/ITW44776.2019.8989292\">10.1109/ITW44776.2019.8989292</a>.","apa":"Hledik, M., Sokolowski, T. R., &#38; Tkačik, G. (2019). A tight upper bound on mutual information. In <i>IEEE Information Theory Workshop, ITW 2019</i>. Visby, Sweden: IEEE. <a href=\"https://doi.org/10.1109/ITW44776.2019.8989292\">https://doi.org/10.1109/ITW44776.2019.8989292</a>","ieee":"M. Hledik, T. R. Sokolowski, and G. Tkačik, “A tight upper bound on mutual information,” in <i>IEEE Information Theory Workshop, ITW 2019</i>, Visby, Sweden, 2019.","ista":"Hledik M, Sokolowski TR, Tkačik G. 2019. A tight upper bound on mutual information. IEEE Information Theory Workshop, ITW 2019. Information Theory Workshop, 8989292."},"abstract":[{"text":"We derive a tight lower bound on equivocation (conditional entropy), or equivalently a tight upper bound on mutual information between a signal variable and channel outputs. The bound is in terms of the joint distribution of the signals and maximum a posteriori decodes (most probable signals given channel output). As part of our derivation, we describe the key properties of the distribution of signals, channel outputs and decodes, that minimizes equivocation and maximizes mutual information. This work addresses a problem in data analysis, where mutual information between signals and decodes is sometimes used to lower bound the mutual information between signals and channel outputs. Our result provides a corresponding upper bound.","lang":"eng"}],"publisher":"IEEE","ec_funded":1,"date_published":"2019-08-01T00:00:00Z","_id":"7606","month":"08","date_updated":"2025-06-30T13:21:05Z","scopus_import":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","publication_status":"published","date_created":"2020-03-22T23:00:47Z","year":"2019","author":[{"full_name":"Hledik, Michal","first_name":"Michal","last_name":"Hledik","id":"4171253A-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sokolowski, Thomas R","id":"3E999752-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1287-3779","first_name":"Thomas R","last_name":"Sokolowski"},{"orcid":"0000-0002-6699-1455","first_name":"Gašper","last_name":"Tkačik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","full_name":"Tkačik, Gašper"}],"language":[{"iso":"eng"}],"doi":"10.1109/ITW44776.2019.8989292","title":"A tight upper bound on mutual information","quality_controlled":"1","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1812.01475","open_access":"1"}],"external_id":{"isi":["000540384500015"],"arxiv":["1812.01475"]},"publication":"IEEE Information Theory Workshop, ITW 2019","project":[{"grant_number":"665385","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program"}],"status":"public","publication_identifier":{"isbn":["9781538669006"]},"oa_version":"Preprint","arxiv":1,"article_number":"8989292","article_processing_charge":"No","isi":1,"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"15020"}]},"conference":{"start_date":"2019-08-25","location":"Visby, Sweden","end_date":"2019-08-28","name":"Information Theory Workshop"},"type":"conference","day":"01","department":[{"_id":"GaTk"}]},{"language":[{"iso":"eng"}],"citation":{"ieee":"C. Prehal, A. Samojlov, M. Nachtnebel, M. Kriechbaum, H. Amenitsch, and S. A. Freunberger, “A revised O2 reduction model in Li-O2 batteries as revealed by in situ small angle X-ray scattering.” ChemRxiv.","ista":"Prehal C, Samojlov A, Nachtnebel M, Kriechbaum M, Amenitsch H, Freunberger SA. A revised O2 reduction model in Li-O2 batteries as revealed by in situ small angle X-ray scattering.","short":"C. Prehal, A. Samojlov, M. Nachtnebel, M. Kriechbaum, H. Amenitsch, S.A. Freunberger, (n.d.).","ama":"Prehal C, Samojlov A, Nachtnebel M, Kriechbaum M, Amenitsch H, Freunberger SA. A revised O2 reduction model in Li-O2 batteries as revealed by in situ small angle X-ray scattering.","chicago":"Prehal, Christian, Aleksej Samojlov, Manfred Nachtnebel, Manfred Kriechbaum, Heinz Amenitsch, and Stefan Alexander Freunberger. “A Revised O2 Reduction Model in Li-O2 Batteries as Revealed by in Situ Small Angle X-Ray Scattering.” ChemRxiv, n.d.","mla":"Prehal, Christian, et al. <i>A Revised O2 Reduction Model in Li-O2 Batteries as Revealed by in Situ Small Angle X-Ray Scattering</i>. ChemRxiv.","apa":"Prehal, C., Samojlov, A., Nachtnebel, M., Kriechbaum, M., Amenitsch, H., &#38; Freunberger, S. A. (n.d.). A revised O2 reduction model in Li-O2 batteries as revealed by in situ small angle X-ray scattering. ChemRxiv."},"abstract":[{"text":"Electrodepositing  insulating  and  insoluble  Li2O2  is  the  key  process  during  discharge  of  aprotic  Li-O2 batteries  and  determines  rate,  capacity,  and  reversibility.  Current  understanding  states  that  the partition  between  surface  adsorbed  and  solvated  LiO2  governs  whether  Li2O2  grows  as  surface  film, leading to low capacity even at low rates, or in solution, leading to particles and high capacities. Here we show that Li2O2 forms to the widest extent as particles via solution mediated LiO2 disproportionation. We  describe  a  unified  Li2O2  growth  model  that  conclusively  explains  capacity  limitations  across  the whole range of electrolytes. Deciding for particle morphology, achievable rate and capacities are species mobilities,   electrode   specific   surface   area   (determining  true   areal   rate)   and   the  concentration distribution of associated LiO2 in solution. Provided that species mobilities and surface are high, high, capacities are possible even with low-donor-number electrolytes, previously considered prototypical for low   capacity   via   surface   growth.   The   tools   for   these   insights   are   microscopy,   hydrodynamic voltammetry, a numerical reaction model, and in situ small/wide angle X-ray scattering (SAXS/WAXS). Combined with sophisticated data analysis, SAXS allows retrieving rich quantitative information from complex multi-phase systems. On a wider perspective, this SAXS method is a powerful in situ metrology with  atomic  to  sub-micron  resolution  to  study  mechanisms  in  complex  electrochemical  systems  and beyond. ","lang":"eng"}],"title":"A revised O2 reduction model in Li-O2 batteries as revealed by in situ small angle X-ray scattering","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.26434/chemrxiv.11447775.v1"}],"publisher":"ChemRxiv","page":"50","date_published":"2019-12-26T00:00:00Z","_id":"7627","date_updated":"2020-04-06T10:36:21Z","month":"12","status":"public","extern":"1","publication_status":"submitted","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-04-01T10:10:21Z","oa_version":"Preprint","year":"2019","article_processing_charge":"No","type":"preprint","day":"26","author":[{"first_name":"Christian","last_name":"Prehal","full_name":"Prehal, Christian"},{"first_name":"Aleksej","last_name":"Samojlov","full_name":"Samojlov, Aleksej"},{"full_name":"Nachtnebel, Manfred","first_name":"Manfred","last_name":"Nachtnebel"},{"full_name":"Kriechbaum, Manfred","last_name":"Kriechbaum","first_name":"Manfred"},{"first_name":"Heinz","last_name":"Amenitsch","full_name":"Amenitsch, Heinz"},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","last_name":"Freunberger","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander"}]},{"publisher":"IEEE","quality_controlled":"1","title":"Function norms for neural networks","doi":"10.1109/ICCVW.2019.00097","citation":{"short":"A. Rannen-Triki, M. Berman, V. Kolmogorov, M.B. Blaschko, in:, Proceedings of the 2019 International Conference on Computer Vision Workshop, IEEE, 2019.","ama":"Rannen-Triki A, Berman M, Kolmogorov V, Blaschko MB. Function norms for neural networks. In: <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>. IEEE; 2019. doi:<a href=\"https://doi.org/10.1109/ICCVW.2019.00097\">10.1109/ICCVW.2019.00097</a>","chicago":"Rannen-Triki, Amal, Maxim Berman, Vladimir Kolmogorov, and Matthew B. Blaschko. “Function Norms for Neural Networks.” In <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>. IEEE, 2019. <a href=\"https://doi.org/10.1109/ICCVW.2019.00097\">https://doi.org/10.1109/ICCVW.2019.00097</a>.","mla":"Rannen-Triki, Amal, et al. “Function Norms for Neural Networks.” <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>, 748–752, IEEE, 2019, doi:<a href=\"https://doi.org/10.1109/ICCVW.2019.00097\">10.1109/ICCVW.2019.00097</a>.","apa":"Rannen-Triki, A., Berman, M., Kolmogorov, V., &#38; Blaschko, M. B. (2019). Function norms for neural networks. In <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>. Seoul, South Korea: IEEE. <a href=\"https://doi.org/10.1109/ICCVW.2019.00097\">https://doi.org/10.1109/ICCVW.2019.00097</a>","ieee":"A. Rannen-Triki, M. Berman, V. Kolmogorov, and M. B. Blaschko, “Function norms for neural networks,” in <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>, Seoul, South Korea, 2019.","ista":"Rannen-Triki A, Berman M, Kolmogorov V, Blaschko MB. 2019. Function norms for neural networks. Proceedings of the 2019 International Conference on Computer Vision Workshop. ICCVW: International Conference on Computer Vision Workshop, 748–752."},"language":[{"iso":"eng"}],"abstract":[{"text":"Deep neural networks (DNNs) have become increasingly important due to their excellent empirical performance on a wide range of problems. However, regularization is generally achieved by indirect means, largely due to the complex set of functions defined by a network and the difficulty in measuring function complexity. There exists no method in the literature for additive regularization based on a norm of the function, as is classically considered in statistical learning theory. In this work, we study the tractability of function norms for deep neural networks with ReLU activations. We provide, to the best of our knowledge, the first proof in the literature of the NP-hardness of computing function norms of DNNs of 3 or more layers. We also highlight a fundamental difference between shallow and deep networks. In the light on these results, we propose a new regularization strategy based on approximate function norms, and show its efficiency on a segmentation task with a DNN.","lang":"eng"}],"publication_identifier":{"isbn":["9781728150239"]},"status":"public","date_updated":"2023-09-08T11:19:12Z","scopus_import":"1","month":"10","_id":"7639","publication":"Proceedings of the 2019 International Conference on Computer Vision Workshop","date_published":"2019-10-01T00:00:00Z","external_id":{"isi":["000554591600090"]},"article_number":"748-752","oa_version":"None","date_created":"2020-04-05T22:00:50Z","publication_status":"published","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"VlKo"}],"day":"01","type":"conference","conference":{"start_date":"2019-10-27","end_date":"2019-10-28","name":"ICCVW: International Conference on Computer Vision Workshop","location":"Seoul, South Korea"},"author":[{"full_name":"Rannen-Triki, Amal","first_name":"Amal","last_name":"Rannen-Triki"},{"last_name":"Berman","first_name":"Maxim","full_name":"Berman, Maxim"},{"full_name":"Kolmogorov, Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov","first_name":"Vladimir"},{"full_name":"Blaschko, Matthew B.","first_name":"Matthew B.","last_name":"Blaschko"}],"article_processing_charge":"No","year":"2019","isi":1},{"language":[{"iso":"eng"}],"doi":"10.1109/ICCVW.2019.00217","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1807.02136","open_access":"1"}],"title":"Detecting visual relationships using box attention","quality_controlled":"1","publication":"Proceedings of the 2019 International Conference on Computer Vision Workshop","external_id":{"arxiv":["1807.02136"],"isi":["000554591601098"]},"publication_identifier":{"isbn":["9781728150239"]},"status":"public","project":[{"call_identifier":"FP7","grant_number":"308036","name":"Lifelong Learning of Visual Scene Understanding","_id":"2532554C-B435-11E9-9278-68D0E5697425"}],"arxiv":1,"oa_version":"Preprint","article_number":"1749-1753","conference":{"start_date":"2019-10-27","location":"Seoul, South Korea","end_date":"2019-10-28","name":"ICCVW: International Conference on Computer Vision Workshop"},"day":"01","type":"conference","isi":1,"article_processing_charge":"No","department":[{"_id":"ChLa"}],"citation":{"short":"A. Kolesnikov, A. Kuznetsova, C. Lampert, V. Ferrari, in:, Proceedings of the 2019 International Conference on Computer Vision Workshop, IEEE, 2019.","ama":"Kolesnikov A, Kuznetsova A, Lampert C, Ferrari V. Detecting visual relationships using box attention. In: <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>. IEEE; 2019. doi:<a href=\"https://doi.org/10.1109/ICCVW.2019.00217\">10.1109/ICCVW.2019.00217</a>","chicago":"Kolesnikov, Alexander, Alina Kuznetsova, Christoph Lampert, and Vittorio Ferrari. “Detecting Visual Relationships Using Box Attention.” In <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>. IEEE, 2019. <a href=\"https://doi.org/10.1109/ICCVW.2019.00217\">https://doi.org/10.1109/ICCVW.2019.00217</a>.","mla":"Kolesnikov, Alexander, et al. “Detecting Visual Relationships Using Box Attention.” <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>, 1749–1753, IEEE, 2019, doi:<a href=\"https://doi.org/10.1109/ICCVW.2019.00217\">10.1109/ICCVW.2019.00217</a>.","apa":"Kolesnikov, A., Kuznetsova, A., Lampert, C., &#38; Ferrari, V. (2019). Detecting visual relationships using box attention. In <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>. Seoul, South Korea: IEEE. <a href=\"https://doi.org/10.1109/ICCVW.2019.00217\">https://doi.org/10.1109/ICCVW.2019.00217</a>","ieee":"A. Kolesnikov, A. Kuznetsova, C. Lampert, and V. Ferrari, “Detecting visual relationships using box attention,” in <i>Proceedings of the 2019 International Conference on Computer Vision Workshop</i>, Seoul, South Korea, 2019.","ista":"Kolesnikov A, Kuznetsova A, Lampert C, Ferrari V. 2019. Detecting visual relationships using box attention. Proceedings of the 2019 International Conference on Computer Vision Workshop. ICCVW: International Conference on Computer Vision Workshop, 1749–1753."},"abstract":[{"lang":"eng","text":"We propose a new model for detecting visual relationships, such as \"person riding motorcycle\" or \"bottle on table\". This task is an important step towards comprehensive structured mage understanding, going beyond detecting individual objects. Our main novelty is a Box Attention mechanism that allows to model pairwise interactions between objects using standard object detection pipelines. The resulting model is conceptually clean, expressive and relies on well-justified training and prediction procedures. Moreover, unlike previously proposed approaches, our model does not introduce any additional complex components or hyperparameters on top of those already required by the underlying detection model. We conduct an experimental evaluation on two datasets, V-COCO and Open Images, demonstrating strong quantitative and qualitative results."}],"publisher":"IEEE","_id":"7640","ec_funded":1,"date_published":"2019-10-01T00:00:00Z","month":"10","date_updated":"2023-09-08T11:18:37Z","scopus_import":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_created":"2020-04-05T22:00:51Z","publication_status":"published","author":[{"id":"2D157DB6-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander","last_name":"Kolesnikov","full_name":"Kolesnikov, Alexander"},{"full_name":"Kuznetsova, Alina","first_name":"Alina","last_name":"Kuznetsova"},{"full_name":"Lampert, Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8622-7887","last_name":"Lampert","first_name":"Christoph"},{"first_name":"Vittorio","last_name":"Ferrari","full_name":"Ferrari, Vittorio"}],"year":"2019"},{"year":"2019","article_processing_charge":"No","author":[{"full_name":"Delaneau, Olivier","last_name":"Delaneau","first_name":"Olivier"},{"first_name":"Jean-François","last_name":"Zagury","full_name":"Zagury, Jean-François"},{"orcid":"0000-0001-8982-8813","first_name":"Matthew Richard","last_name":"Robinson","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","full_name":"Robinson, Matthew Richard"},{"first_name":"Jonathan L.","last_name":"Marchini","full_name":"Marchini, Jonathan L."},{"first_name":"Emmanouil T.","last_name":"Dermitzakis","full_name":"Dermitzakis, Emmanouil T."}],"type":"journal_article","day":"28","volume":10,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2020-04-30T10:40:32Z","publication_status":"published","oa_version":"Published Version","article_number":"5436","extern":"1","article_type":"original","month":"11","date_updated":"2021-01-12T08:15:01Z","publication_identifier":{"issn":["2041-1723"]},"status":"public","date_published":"2019-11-28T00:00:00Z","publication":"Nature Communications","_id":"7710","title":"Accurate, scalable and integrative haplotype estimation","quality_controlled":"1","publisher":"Springer Nature","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41467-019-13225-y"}],"oa":1,"language":[{"iso":"eng"}],"citation":{"ieee":"O. Delaneau, J.-F. Zagury, M. R. Robinson, J. L. Marchini, and E. T. Dermitzakis, “Accurate, scalable and integrative haplotype estimation,” <i>Nature Communications</i>, vol. 10. Springer Nature, 2019.","ista":"Delaneau O, Zagury J-F, Robinson MR, Marchini JL, Dermitzakis ET. 2019. Accurate, scalable and integrative haplotype estimation. Nature Communications. 10, 5436.","chicago":"Delaneau, Olivier, Jean-François Zagury, Matthew Richard Robinson, Jonathan L. Marchini, and Emmanouil T. Dermitzakis. “Accurate, Scalable and Integrative Haplotype Estimation.” <i>Nature Communications</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s41467-019-13225-y\">https://doi.org/10.1038/s41467-019-13225-y</a>.","short":"O. Delaneau, J.-F. Zagury, M.R. Robinson, J.L. Marchini, E.T. Dermitzakis, Nature Communications 10 (2019).","ama":"Delaneau O, Zagury J-F, Robinson MR, Marchini JL, Dermitzakis ET. Accurate, scalable and integrative haplotype estimation. <i>Nature Communications</i>. 2019;10. doi:<a href=\"https://doi.org/10.1038/s41467-019-13225-y\">10.1038/s41467-019-13225-y</a>","apa":"Delaneau, O., Zagury, J.-F., Robinson, M. R., Marchini, J. L., &#38; Dermitzakis, E. T. (2019). Accurate, scalable and integrative haplotype estimation. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-019-13225-y\">https://doi.org/10.1038/s41467-019-13225-y</a>","mla":"Delaneau, Olivier, et al. “Accurate, Scalable and Integrative Haplotype Estimation.” <i>Nature Communications</i>, vol. 10, 5436, Springer Nature, 2019, doi:<a href=\"https://doi.org/10.1038/s41467-019-13225-y\">10.1038/s41467-019-13225-y</a>."},"abstract":[{"text":"The number of human genomes being genotyped or sequenced increases exponentially and efficient haplotype estimation methods able to handle this amount of data are now required. Here we present a method, SHAPEIT4, which substantially improves upon other methods to process large genotype and high coverage sequencing datasets. It notably exhibits sub-linear running times with sample size, provides highly accurate haplotypes and allows integrating external phasing information such as large reference panels of haplotypes, collections of pre-phased variants and long sequencing reads. We provide SHAPEIT4 in an open source format and demonstrate its performance in terms of accuracy and running times on two gold standard datasets: the UK Biobank data and the Genome In A Bottle.","lang":"eng"}],"doi":"10.1038/s41467-019-13225-y","intvolume":"        10"},{"extern":"1","article_type":"original","volume":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2020-04-30T10:40:56Z","oa_version":"None","article_processing_charge":"No","issue":"12","year":"2019","related_material":{"link":[{"url":"https://doi.org/10.1038/s42255-020-0202-0","relation":"erratum"}]},"author":[{"full_name":"Bevers, Roel P. J.","last_name":"Bevers","first_name":"Roel P. J."},{"full_name":"Litovchenko, Maria","last_name":"Litovchenko","first_name":"Maria"},{"first_name":"Adamandia","last_name":"Kapopoulou","full_name":"Kapopoulou, Adamandia"},{"full_name":"Braman, Virginie S.","first_name":"Virginie S.","last_name":"Braman"},{"last_name":"Robinson","first_name":"Matthew Richard","orcid":"0000-0001-8982-8813","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","full_name":"Robinson, Matthew Richard"},{"full_name":"Auwerx, Johan","last_name":"Auwerx","first_name":"Johan"},{"first_name":"Brian","last_name":"Hollis","full_name":"Hollis, Brian"},{"last_name":"Deplancke","first_name":"Bart","full_name":"Deplancke, Bart"}],"day":"09","type":"journal_article","abstract":[{"lang":"eng","text":"The nature and extent of mitochondrial DNA variation in a population and how it affects traits is poorly understood. Here we resequence the mitochondrial genomes of 169 Drosophila Genetic Reference Panel lines, identifying 231 variants that stratify along 12 mitochondrial haplotypes. We identify 1,845 cases of mitonuclear allelic imbalances, thus implying that mitochondrial haplotypes are reflected in the nuclear genome. However, no major fitness effects are associated with mitonuclear imbalance, suggesting that such imbalances reflect population structure at the mitochondrial level rather than genomic incompatibilities. Although mitochondrial haplotypes have no direct impact on mitochondrial respiration, some haplotypes are associated with stress- and metabolism-related phenotypes, including food intake in males. Finally, through reciprocal swapping of mitochondrial genomes, we demonstrate that a mitochondrial haplotype associated with high food intake can rescue a low food intake phenotype. Together, our findings provide new insight into population structure at the mitochondrial level and point to the importance of incorporating mitochondrial haplotypes in genotype–phenotype relationship studies."}],"language":[{"iso":"eng"}],"citation":{"ieee":"R. P. J. Bevers <i>et al.</i>, “Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel,” <i>Nature Metabolism</i>, vol. 1, no. 12. Springer Nature, pp. 1226–1242, 2019.","ista":"Bevers RPJ, Litovchenko M, Kapopoulou A, Braman VS, Robinson MR, Auwerx J, Hollis B, Deplancke B. 2019. Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel. Nature Metabolism. 1(12), 1226–1242.","chicago":"Bevers, Roel P. J., Maria Litovchenko, Adamandia Kapopoulou, Virginie S. Braman, Matthew Richard Robinson, Johan Auwerx, Brian Hollis, and Bart Deplancke. “Mitochondrial Haplotypes Affect Metabolic Phenotypes in the Drosophila Genetic Reference Panel.” <i>Nature Metabolism</i>. Springer Nature, 2019. <a href=\"https://doi.org/10.1038/s42255-019-0147-3\">https://doi.org/10.1038/s42255-019-0147-3</a>.","short":"R.P.J. Bevers, M. Litovchenko, A. Kapopoulou, V.S. Braman, M.R. Robinson, J. Auwerx, B. Hollis, B. Deplancke, Nature Metabolism 1 (2019) 1226–1242.","ama":"Bevers RPJ, Litovchenko M, Kapopoulou A, et al. Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel. <i>Nature Metabolism</i>. 2019;1(12):1226-1242. doi:<a href=\"https://doi.org/10.1038/s42255-019-0147-3\">10.1038/s42255-019-0147-3</a>","apa":"Bevers, R. P. J., Litovchenko, M., Kapopoulou, A., Braman, V. S., Robinson, M. R., Auwerx, J., … Deplancke, B. (2019). Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel. <i>Nature Metabolism</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s42255-019-0147-3\">https://doi.org/10.1038/s42255-019-0147-3</a>","mla":"Bevers, Roel P. J., et al. “Mitochondrial Haplotypes Affect Metabolic Phenotypes in the Drosophila Genetic Reference Panel.” <i>Nature Metabolism</i>, vol. 1, no. 12, Springer Nature, 2019, pp. 1226–42, doi:<a href=\"https://doi.org/10.1038/s42255-019-0147-3\">10.1038/s42255-019-0147-3</a>."},"doi":"10.1038/s42255-019-0147-3","intvolume":"         1","title":"Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel","quality_controlled":"1","page":"1226-1242","publisher":"Springer Nature","publication":"Nature Metabolism","date_published":"2019-12-09T00:00:00Z","_id":"7711","month":"12","date_updated":"2021-01-12T08:15:01Z","status":"public","publication_identifier":{"issn":["2522-5812"]}},{"publication_status":"published","date_created":"2018-12-11T11:44:06Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","author":[{"first_name":"Iordan V","last_name":"Ganev","id":"447491B8-F248-11E8-B48F-1D18A9856A87","full_name":"Ganev, Iordan V"}],"year":"2019","has_accepted_license":"1","publisher":"Wiley","file_date_updated":"2020-07-14T12:46:35Z","abstract":[{"lang":"eng","text":"In this paper, we introduce a quantum version of the wonderful compactification of a group as a certain noncommutative projective scheme. Our approach stems from the fact that the wonderful compactification encodes the asymptotics of matrix coefficients, and from its realization as a GIT quotient of the Vinberg semigroup. In order to define the wonderful compactification for a quantum group, we adopt a generalized formalism of Proj categories in the spirit of Artin and Zhang. Key to our construction is a quantum version of the Vinberg semigroup, which we define as a q-deformation of a certain Rees algebra, compatible with a standard Poisson structure. Furthermore, we discuss quantum analogues of the stratification of the wonderful compactification by orbits for a certain group action, and provide explicit computations in the case of SL2."}],"citation":{"ieee":"I. V. Ganev, “The wonderful compactification for quantum groups,” <i>Journal of the London Mathematical Society</i>, vol. 99, no. 3. Wiley, pp. 778–806, 2019.","ista":"Ganev IV. 2019. The wonderful compactification for quantum groups. Journal of the London Mathematical Society. 99(3), 778–806.","chicago":"Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal of the London Mathematical Society</i>. Wiley, 2019. <a href=\"https://doi.org/10.1112/jlms.12193\">https://doi.org/10.1112/jlms.12193</a>.","short":"I.V. Ganev, Journal of the London Mathematical Society 99 (2019) 778–806.","ama":"Ganev IV. The wonderful compactification for quantum groups. <i>Journal of the London Mathematical Society</i>. 2019;99(3):778-806. doi:<a href=\"https://doi.org/10.1112/jlms.12193\">10.1112/jlms.12193</a>","apa":"Ganev, I. V. (2019). The wonderful compactification for quantum groups. <i>Journal of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/jlms.12193\">https://doi.org/10.1112/jlms.12193</a>","mla":"Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal of the London Mathematical Society</i>, vol. 99, no. 3, Wiley, 2019, pp. 778–806, doi:<a href=\"https://doi.org/10.1112/jlms.12193\">10.1112/jlms.12193</a>."},"month":"06","scopus_import":"1","date_updated":"2023-09-19T10:13:08Z","_id":"5","publist_id":"8052","date_published":"2019-06-01T00:00:00Z","oa_version":"Published Version","volume":99,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"department":[{"_id":"TaHa"}],"day":"01","type":"journal_article","issue":"3","article_processing_charge":"Yes (via OA deal)","isi":1,"page":"778-806","oa":1,"title":"The wonderful compactification for quantum groups","quality_controlled":"1","intvolume":"        99","file":[{"date_updated":"2020-07-14T12:46:35Z","creator":"kschuh","file_size":431754,"content_type":"application/pdf","date_created":"2020-01-07T13:31:53Z","file_id":"7238","relation":"main_file","access_level":"open_access","checksum":"1be56239b2cd740a0e9a084f773c22f6","file_name":"2019_Wiley_Ganev.pdf"}],"language":[{"iso":"eng"}],"doi":"10.1112/jlms.12193","status":"public","ddc":["510"],"publication":"Journal of the London Mathematical Society","external_id":{"isi":["000470025900008"]}},{"article_type":"original","arxiv":1,"oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"volume":62,"type":"journal_article","day":"01","issue":"4","isi":1,"article_processing_charge":"Yes (via OA deal)","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"6287"}]},"department":[{"_id":"HeEd"}],"intvolume":"        62","file":[{"date_created":"2019-02-06T10:10:46Z","file_id":"5932","file_size":599339,"content_type":"application/pdf","checksum":"f9d00e166efaccb5a76bbcbb4dcea3b4","file_name":"2018_DiscreteCompGeometry_Edelsbrunner.pdf","relation":"main_file","access_level":"open_access","date_updated":"2020-07-14T12:47:10Z","creator":"dernst"}],"language":[{"iso":"eng"}],"doi":"10.1007/s00454-018-0049-2","page":"865–878","oa":1,"title":"Poisson–Delaunay Mosaics of Order k","quality_controlled":"1","ddc":["516"],"publication":"Discrete and Computational Geometry","external_id":{"isi":["000494042900008"],"arxiv":["1709.09380"]},"status":"public","publication_identifier":{"eissn":["14320444"],"issn":["01795376"]},"project":[{"call_identifier":"H2020","grant_number":"788183","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","name":"Alpha Shape Theory Extended"},{"name":"Persistence and stability of geometric complexes","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35","call_identifier":"FWF"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"publication_status":"published","date_created":"2018-12-16T22:59:20Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"first_name":"Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","full_name":"Edelsbrunner, Herbert"},{"id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87","last_name":"Nikitenko","first_name":"Anton","orcid":"0000-0002-0659-3201","full_name":"Nikitenko, Anton"}],"year":"2019","has_accepted_license":"1","abstract":[{"lang":"eng","text":"The order-k Voronoi tessellation of a locally finite set 𝑋⊆ℝ𝑛 decomposes ℝ𝑛 into convex domains whose points have the same k nearest neighbors in X. Assuming X is a stationary Poisson point process, we give explicit formulas for the expected number and total area of faces of a given dimension per unit volume of space. We also develop a relaxed version of discrete Morse theory and generalize by counting only faces, for which the k nearest points in X are within a given distance threshold."}],"citation":{"apa":"Edelsbrunner, H., &#38; Nikitenko, A. (2019). Poisson–Delaunay Mosaics of Order k. <i>Discrete and Computational Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s00454-018-0049-2\">https://doi.org/10.1007/s00454-018-0049-2</a>","mla":"Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of Order K.” <i>Discrete and Computational Geometry</i>, vol. 62, no. 4, Springer, 2019, pp. 865–878, doi:<a href=\"https://doi.org/10.1007/s00454-018-0049-2\">10.1007/s00454-018-0049-2</a>.","chicago":"Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of Order K.” <i>Discrete and Computational Geometry</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00454-018-0049-2\">https://doi.org/10.1007/s00454-018-0049-2</a>.","ama":"Edelsbrunner H, Nikitenko A. Poisson–Delaunay Mosaics of Order k. <i>Discrete and Computational Geometry</i>. 2019;62(4):865–878. doi:<a href=\"https://doi.org/10.1007/s00454-018-0049-2\">10.1007/s00454-018-0049-2</a>","short":"H. Edelsbrunner, A. Nikitenko, Discrete and Computational Geometry 62 (2019) 865–878.","ista":"Edelsbrunner H, Nikitenko A. 2019. Poisson–Delaunay Mosaics of Order k. Discrete and Computational Geometry. 62(4), 865–878.","ieee":"H. Edelsbrunner and A. Nikitenko, “Poisson–Delaunay Mosaics of Order k,” <i>Discrete and Computational Geometry</i>, vol. 62, no. 4. Springer, pp. 865–878, 2019."},"file_date_updated":"2020-07-14T12:47:10Z","publisher":"Springer","_id":"5678","ec_funded":1,"date_published":"2019-12-01T00:00:00Z","month":"12","scopus_import":"1","date_updated":"2023-09-07T12:07:12Z"},{"author":[{"full_name":"Andalo, Christophe","last_name":"Andalo","first_name":"Christophe"},{"full_name":"Burrus, Monique","first_name":"Monique","last_name":"Burrus"},{"last_name":"Paute","first_name":"Sandrine","full_name":"Paute, Sandrine"},{"full_name":"Lauzeral, Christine","last_name":"Lauzeral","first_name":"Christine"},{"full_name":"Field, David","id":"419049E2-F248-11E8-B48F-1D18A9856A87","first_name":"David","last_name":"Field","orcid":"0000-0002-4014-8478"}],"year":"2019","publication_status":"published","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2018-12-16T22:59:20Z","_id":"5680","date_published":"2019-01-01T00:00:00Z","date_updated":"2023-08-24T14:34:12Z","scopus_import":"1","month":"01","citation":{"short":"C. Andalo, M. Burrus, S. Paute, C. Lauzeral, D. Field, Botany Letters 166 (2019) 80–92.","ama":"Andalo C, Burrus M, Paute S, Lauzeral C, Field D. Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone. <i>Botany Letters</i>. 2019;166(1):80-92. doi:<a href=\"https://doi.org/10.1080/23818107.2018.1545142\">10.1080/23818107.2018.1545142</a>","chicago":"Andalo, Christophe, Monique Burrus, Sandrine Paute, Christine Lauzeral, and David Field. “Prevalence of Legitimate Pollinators and Nectar Robbers and the Consequences for Fruit Set in an Antirrhinum Majus Hybrid Zone.” <i>Botany Letters</i>. Taylor and Francis, 2019. <a href=\"https://doi.org/10.1080/23818107.2018.1545142\">https://doi.org/10.1080/23818107.2018.1545142</a>.","mla":"Andalo, Christophe, et al. “Prevalence of Legitimate Pollinators and Nectar Robbers and the Consequences for Fruit Set in an Antirrhinum Majus Hybrid Zone.” <i>Botany Letters</i>, vol. 166, no. 1, Taylor and Francis, 2019, pp. 80–92, doi:<a href=\"https://doi.org/10.1080/23818107.2018.1545142\">10.1080/23818107.2018.1545142</a>.","apa":"Andalo, C., Burrus, M., Paute, S., Lauzeral, C., &#38; Field, D. (2019). Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone. <i>Botany Letters</i>. Taylor and Francis. <a href=\"https://doi.org/10.1080/23818107.2018.1545142\">https://doi.org/10.1080/23818107.2018.1545142</a>","ieee":"C. Andalo, M. Burrus, S. Paute, C. Lauzeral, and D. Field, “Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone,” <i>Botany Letters</i>, vol. 166, no. 1. Taylor and Francis, pp. 80–92, 2019.","ista":"Andalo C, Burrus M, Paute S, Lauzeral C, Field D. 2019. Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone. Botany Letters. 166(1), 80–92."},"abstract":[{"lang":"eng","text":"Pollinators display a remarkable diversity of foraging strategies with flowering plants, from primarily mutualistic interactions to cheating through nectar robbery. Despite numerous studies on the effect of nectar robbing on components of plant fitness, its contribution to reproductive isolation is unclear. We experimentally tested the impact of different pollinator strategies in a natural hybrid zone between two subspecies of Antirrhinum majus with alternate flower colour guides. On either side of a steep cline in flower colour between Antirrhinum majus pseudomajus (magenta) and A. m. striatum (yellow), we quantified the behaviour of all floral visitors at different time points during the flowering season. Using long-run camera surveys, we quantify the impact of nectar robbing on the number of flowers visited per inflorescence and the flower probing time. We further experimentally tested the effect of nectar robbing on female reproductive success by manipulating the intensity of robbing. While robbing increased over time the number of legitimate visitors tended to decrease concomitantly. We found that the number of flowers pollinated on a focal inflorescence decreased with the number of prior robbing events. However, in the manipulative experiment, fruit set and fruit volume did not vary significantly between low robbing and control treatments. Our findings challenge the idea that robbers have a negative impact on plant fitness through female function. This study also adds to our understanding of the components of pollinator-mediated reproductive isolation and the maintenance of Antirrhinum hybrid zones."}],"publisher":"Taylor and Francis","type":"journal_article","day":"01","article_processing_charge":"No","isi":1,"issue":"1","department":[{"_id":"NiBa"}],"oa_version":"None","volume":166,"external_id":{"isi":["000463802800009"]},"publication":"Botany Letters","publication_identifier":{"eissn":["23818115"],"issn":["23818107"]},"status":"public","intvolume":"       166","doi":"10.1080/23818107.2018.1545142","language":[{"iso":"eng"}],"page":"80-92","quality_controlled":"1","title":"Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone"},{"ec_funded":1,"date_published":"2019-02-01T00:00:00Z","_id":"5789","month":"02","scopus_import":"1","date_updated":"2023-09-11T14:03:28Z","citation":{"ista":"Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. 2019. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nature Cell Biology. 21, 169–178.","ieee":"N. Petridou, S. Grigolon, G. Salbreux, E. B. Hannezo, and C.-P. J. Heisenberg, “Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling,” <i>Nature Cell Biology</i>, vol. 21. Nature Publishing Group, pp. 169–178, 2019.","mla":"Petridou, Nicoletta, et al. “Fluidization-Mediated Tissue Spreading by Mitotic Cell Rounding and Non-Canonical Wnt Signalling.” <i>Nature Cell Biology</i>, vol. 21, Nature Publishing Group, 2019, pp. 169–178, doi:<a href=\"https://doi.org/10.1038/s41556-018-0247-4\">10.1038/s41556-018-0247-4</a>.","apa":"Petridou, N., Grigolon, S., Salbreux, G., Hannezo, E. B., &#38; Heisenberg, C.-P. J. (2019). Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. <i>Nature Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41556-018-0247-4\">https://doi.org/10.1038/s41556-018-0247-4</a>","ama":"Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. <i>Nature Cell Biology</i>. 2019;21:169–178. doi:<a href=\"https://doi.org/10.1038/s41556-018-0247-4\">10.1038/s41556-018-0247-4</a>","short":"N. Petridou, S. Grigolon, G. Salbreux, E.B. Hannezo, C.-P.J. Heisenberg, Nature Cell Biology 21 (2019) 169–178.","chicago":"Petridou, Nicoletta, Silvia Grigolon, Guillaume Salbreux, Edouard B Hannezo, and Carl-Philipp J Heisenberg. “Fluidization-Mediated Tissue Spreading by Mitotic Cell Rounding and Non-Canonical Wnt Signalling.” <i>Nature Cell Biology</i>. Nature Publishing Group, 2019. <a href=\"https://doi.org/10.1038/s41556-018-0247-4\">https://doi.org/10.1038/s41556-018-0247-4</a>."},"file_date_updated":"2020-10-21T07:18:35Z","abstract":[{"lang":"eng","text":"Tissue morphogenesis is driven by mechanical forces that elicit changes in cell size, shape and motion. The extent by which forces deform tissues critically depends on the rheological properties of the recipient tissue. Yet, whether and how dynamic changes in tissue rheology affect tissue morphogenesis and how they are regulated within the developing organism remain unclear. Here, we show that blastoderm spreading at the onset of zebrafish morphogenesis relies on a rapid, pronounced and spatially patterned tissue fluidization. Blastoderm fluidization is temporally controlled by mitotic cell rounding-dependent cell–cell contact disassembly during the last rounds of cell cleavages. Moreover, fluidization is spatially restricted to the central blastoderm by local activation of non-canonical Wnt signalling within the blastoderm margin, increasing cell cohesion and thereby counteracting the effect of mitotic rounding on contact disassembly. Overall, our results identify a fluidity transition mediated by loss of cell cohesion as a critical regulator of embryo morphogenesis."}],"publisher":"Nature Publishing Group","year":"2019","has_accepted_license":"1","author":[{"last_name":"Petridou","first_name":"Nicoletta","orcid":"0000-0002-8451-1195","id":"2A003F6C-F248-11E8-B48F-1D18A9856A87","full_name":"Petridou, Nicoletta"},{"full_name":"Grigolon, Silvia","first_name":"Silvia","last_name":"Grigolon"},{"first_name":"Guillaume","last_name":"Salbreux","full_name":"Salbreux, Guillaume"},{"full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B","orcid":"0000-0001-6005-1561","last_name":"Hannezo"},{"full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87"}],"pmid":1,"publication_status":"published","date_created":"2018-12-30T22:59:15Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","ddc":["570"],"external_id":{"pmid":["30559456"],"isi":["000457468300011"]},"publication":"Nature Cell Biology","acknowledged_ssus":[{"_id":"Bio"}],"project":[{"name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","_id":"260F1432-B435-11E9-9278-68D0E5697425","grant_number":"742573","call_identifier":"H2020"},{"grant_number":"ALTF710-2016","_id":"253E54C8-B435-11E9-9278-68D0E5697425","name":"Molecular mechanism of auxindriven formative divisions delineating lateral root organogenesis in plants (EMBO fellowship)"}],"publication_identifier":{"issn":["14657392"]},"status":"public","language":[{"iso":"eng"}],"doi":"10.1038/s41556-018-0247-4","intvolume":"        21","file":[{"creator":"dernst","date_updated":"2020-10-21T07:18:35Z","checksum":"e38523787b3bc84006f2793de99ad70f","file_name":"2018_NatureCellBio_Petridou_accepted.pdf","success":1,"relation":"main_file","access_level":"open_access","file_id":"8685","date_created":"2020-10-21T07:18:35Z","content_type":"application/pdf","file_size":71590590}],"title":"Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling","quality_controlled":"1","page":"169–178","oa":1,"article_processing_charge":"No","isi":1,"related_material":{"link":[{"url":"https://ist.ac.at/en/news/when-a-fish-becomes-fluid/","description":"News on IST Homepage","relation":"press_release"}]},"type":"journal_article","day":"01","department":[{"_id":"CaHe"},{"_id":"EdHa"}],"article_type":"original","volume":21,"oa_version":"Submitted Version"},{"department":[{"_id":"UlWa"}],"article_processing_charge":"No","isi":1,"issue":"4","day":"01","type":"journal_article","volume":91,"oa_version":"Preprint","arxiv":1,"article_type":"original","project":[{"grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}],"status":"public","publication_identifier":{"issn":["03649024"]},"publication":"Journal of Graph Theory","external_id":{"isi":["000485392800004"],"arxiv":["1309.2399"]},"quality_controlled":"1","title":"Extending partial representations of circle graphs","oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1309.2399"}],"page":"365-394","doi":"10.1002/jgt.22436","language":[{"iso":"eng"}],"intvolume":"        91","year":"2019","author":[{"full_name":"Chaplick, Steven","first_name":"Steven","last_name":"Chaplick"},{"id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8485-1774","last_name":"Fulek","first_name":"Radoslav","full_name":"Fulek, Radoslav"},{"first_name":"Pavel","last_name":"Klavík","full_name":"Klavík, Pavel"}],"publication_status":"published","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2018-12-30T22:59:15Z","date_updated":"2023-08-24T14:30:43Z","scopus_import":"1","month":"08","date_published":"2019-08-01T00:00:00Z","ec_funded":1,"_id":"5790","publisher":"Wiley","abstract":[{"lang":"eng","text":"The partial representation extension problem is a recently introduced generalization of the recognition problem. A circle graph is an intersection graph of chords of a circle. We study the partial representation extension problem for circle graphs, where the input consists of a graph G and a partial representation R′ giving some predrawn chords that represent an induced subgraph of G. The question is whether one can extend R′ to a representation R of the entire graph G, that is, whether one can draw the remaining chords into a partially predrawn representation to obtain a representation of G. Our main result is an O(n3) time algorithm for partial representation extension of circle graphs, where n is the number of vertices. To show this, we describe the structure of all representations of a circle graph using split decomposition. This can be of independent interest."}],"citation":{"apa":"Chaplick, S., Fulek, R., &#38; Klavík, P. (2019). Extending partial representations of circle graphs. <i>Journal of Graph Theory</i>. Wiley. <a href=\"https://doi.org/10.1002/jgt.22436\">https://doi.org/10.1002/jgt.22436</a>","mla":"Chaplick, Steven, et al. “Extending Partial Representations of Circle Graphs.” <i>Journal of Graph Theory</i>, vol. 91, no. 4, Wiley, 2019, pp. 365–94, doi:<a href=\"https://doi.org/10.1002/jgt.22436\">10.1002/jgt.22436</a>.","chicago":"Chaplick, Steven, Radoslav Fulek, and Pavel Klavík. “Extending Partial Representations of Circle Graphs.” <i>Journal of Graph Theory</i>. Wiley, 2019. <a href=\"https://doi.org/10.1002/jgt.22436\">https://doi.org/10.1002/jgt.22436</a>.","ama":"Chaplick S, Fulek R, Klavík P. Extending partial representations of circle graphs. <i>Journal of Graph Theory</i>. 2019;91(4):365-394. doi:<a href=\"https://doi.org/10.1002/jgt.22436\">10.1002/jgt.22436</a>","short":"S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.","ista":"Chaplick S, Fulek R, Klavík P. 2019. Extending partial representations of circle graphs. Journal of Graph Theory. 91(4), 365–394.","ieee":"S. Chaplick, R. Fulek, and P. Klavík, “Extending partial representations of circle graphs,” <i>Journal of Graph Theory</i>, vol. 91, no. 4. Wiley, pp. 365–394, 2019."}},{"abstract":[{"text":"The transcription coactivator, Yes-associated protein (YAP), which is a nuclear effector of the Hippo signaling pathway, has been shown to be a mechano-transducer. By using mutant fish and human 3D spheroids, we have recently demonstrated that YAP is also a mechano-effector. YAP functions in three-dimensional (3D) morphogenesis of organ and global body shape by controlling actomyosin-mediated tissue tension. In this chapter, we present a platform that links the findings in fish embryos with human cells. The protocols for analyzing tissue tension-mediated global body shape/organ morphogenesis in vivo and ex vivo using medaka fish embryos and in vitro using human cell spheroids represent useful tools for unraveling the molecular mechanisms by which YAP functions in regulating global body/organ morphogenesis.","lang":"eng"}],"alternative_title":["MIMB"],"citation":{"mla":"Asaoka, Yoichi, et al. “Studying YAP-Mediated 3D Morphogenesis Using Fish Embryos and Human Spheroids.” <i>The Hippo Pathway</i>, edited by Alexander Hergovich, vol. 1893, Springer, 2019, pp. 167–81, doi:<a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">10.1007/978-1-4939-8910-2_14</a>.","apa":"Asaoka, Y., Morita, H., Furumoto, H., Heisenberg, C.-P. J., &#38; Furutani-Seiki, M. (2019). Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In A. Hergovich (Ed.), <i>The hippo pathway</i> (Vol. 1893, pp. 167–181). Springer. <a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">https://doi.org/10.1007/978-1-4939-8910-2_14</a>","ama":"Asaoka Y, Morita H, Furumoto H, Heisenberg C-PJ, Furutani-Seiki M. Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In: Hergovich A, ed. <i>The Hippo Pathway</i>. Vol 1893. Methods in Molecular Biology. Springer; 2019:167-181. doi:<a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">10.1007/978-1-4939-8910-2_14</a>","short":"Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki, in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.","chicago":"Asaoka, Yoichi, Hitoshi Morita, Hiroko Furumoto, Carl-Philipp J Heisenberg, and Makoto Furutani-Seiki. “Studying YAP-Mediated 3D Morphogenesis Using Fish Embryos and Human Spheroids.” In <i>The Hippo Pathway</i>, edited by Alexander Hergovich, 1893:167–81. Methods in Molecular Biology. Springer, 2019. <a href=\"https://doi.org/10.1007/978-1-4939-8910-2_14\">https://doi.org/10.1007/978-1-4939-8910-2_14</a>.","ista":"Asaoka Y, Morita H, Furumoto H, Heisenberg C-PJ, Furutani-Seiki M. 2019.Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In: The hippo pathway. MIMB, vol. 1893, 167–181.","ieee":"Y. Asaoka, H. Morita, H. Furumoto, C.-P. J. Heisenberg, and M. Furutani-Seiki, “Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids,” in <i>The hippo pathway</i>, vol. 1893, A. Hergovich, Ed. Springer, 2019, pp. 167–181."},"language":[{"iso":"eng"}],"series_title":"Methods in Molecular Biology","doi":"10.1007/978-1-4939-8910-2_14","intvolume":"      1893","title":"Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids","quality_controlled":"1","page":"167-181","publisher":"Springer","publication":"The hippo pathway","date_published":"2019-01-01T00:00:00Z","_id":"5793","month":"01","scopus_import":1,"date_updated":"2021-01-12T08:03:30Z","status":"public","publication_identifier":{"isbn":["978-1-4939-8909-6"]},"volume":1893,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2019-01-06T22:59:11Z","publication_status":"published","oa_version":"None","year":"2019","author":[{"last_name":"Asaoka","first_name":"Yoichi","full_name":"Asaoka, Yoichi"},{"first_name":"Hitoshi","last_name":"Morita","full_name":"Morita, Hitoshi"},{"full_name":"Furumoto, Hiroko","first_name":"Hiroko","last_name":"Furumoto"},{"id":"39427864-F248-11E8-B48F-1D18A9856A87","last_name":"Heisenberg","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","full_name":"Heisenberg, Carl-Philipp J"},{"first_name":"Makoto","last_name":"Furutani-Seiki","full_name":"Furutani-Seiki, Makoto"}],"type":"book_chapter","day":"01","department":[{"_id":"CaHe"}],"editor":[{"full_name":"Hergovich, Alexander","last_name":"Hergovich","first_name":"Alexander"}]},{"day":"10","type":"journal_article","article_processing_charge":"No","isi":1,"issue":"4","department":[{"_id":"GaTk"}],"article_type":"original","oa_version":"Submitted Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND 3.0)","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (3.0)"},"volume":15,"publication":"Soft Matter","external_id":{"isi":["000457329700003"],"pmid":["30629082"]},"ddc":["530"],"status":"public","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"file":[{"content_type":"application/pdf","file_size":5370762,"date_created":"2020-10-09T11:00:05Z","file_id":"8641","relation":"main_file","access_level":"open_access","checksum":"614c337d6424ccd3d48d1b1f9513510d","success":1,"file_name":"lmt_sftmtr_V8.pdf","date_updated":"2020-10-09T11:00:05Z","creator":"bkavcic"}],"intvolume":"        15","doi":"10.1039/c8sm01956h","language":[{"iso":"eng"}],"oa":1,"page":"602-614","quality_controlled":"1","title":"Limiting shapes of confined lipid vesicles","author":[{"full_name":"Kavcic, Bor","id":"350F91D2-F248-11E8-B48F-1D18A9856A87","first_name":"Bor","orcid":"0000-0001-6041-254X","last_name":"Kavcic"},{"last_name":"Sakashita","first_name":"A.","full_name":"Sakashita, A."},{"last_name":"Noguchi","first_name":"H.","full_name":"Noguchi, H."},{"last_name":"Ziherl","first_name":"P.","full_name":"Ziherl, P."}],"has_accepted_license":"1","year":"2019","pmid":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_created":"2019-01-11T07:37:47Z","publication_status":"published","_id":"5817","date_published":"2019-01-10T00:00:00Z","date_updated":"2023-09-13T08:47:16Z","scopus_import":"1","month":"01","file_date_updated":"2020-10-09T11:00:05Z","citation":{"chicago":"Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes of Confined Lipid Vesicles.” <i>Soft Matter</i>. Royal Society of Chemistry, 2019. <a href=\"https://doi.org/10.1039/c8sm01956h\">https://doi.org/10.1039/c8sm01956h</a>.","ama":"Kavcic B, Sakashita A, Noguchi H, Ziherl P. Limiting shapes of confined lipid vesicles. <i>Soft Matter</i>. 2019;15(4):602-614. doi:<a href=\"https://doi.org/10.1039/c8sm01956h\">10.1039/c8sm01956h</a>","short":"B. Kavcic, A. Sakashita, H. Noguchi, P. Ziherl, Soft Matter 15 (2019) 602–614.","apa":"Kavcic, B., Sakashita, A., Noguchi, H., &#38; Ziherl, P. (2019). Limiting shapes of confined lipid vesicles. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c8sm01956h\">https://doi.org/10.1039/c8sm01956h</a>","mla":"Kavcic, Bor, et al. “Limiting Shapes of Confined Lipid Vesicles.” <i>Soft Matter</i>, vol. 15, no. 4, Royal Society of Chemistry, 2019, pp. 602–14, doi:<a href=\"https://doi.org/10.1039/c8sm01956h\">10.1039/c8sm01956h</a>.","ieee":"B. Kavcic, A. Sakashita, H. Noguchi, and P. Ziherl, “Limiting shapes of confined lipid vesicles,” <i>Soft Matter</i>, vol. 15, no. 4. Royal Society of Chemistry, pp. 602–614, 2019.","ista":"Kavcic B, Sakashita A, Noguchi H, Ziherl P. 2019. Limiting shapes of confined lipid vesicles. Soft Matter. 15(4), 602–614."},"abstract":[{"lang":"eng","text":"We theoretically study the shapes of lipid vesicles confined to a spherical cavity, elaborating a framework based on the so-called limiting shapes constructed from geometrically simple structural elements such as double-membrane walls and edges. Partly inspired by numerical results, the proposed non-compartmentalized and compartmentalized limiting shapes are arranged in the bilayer-couple phase diagram which is then compared to its free-vesicle counterpart. We also compute the area-difference-elasticity phase diagram of the limiting shapes and we use it to interpret shape transitions experimentally observed in vesicles confined within another vesicle. The limiting-shape framework may be generalized to theoretically investigate the structure of certain cell organelles such as the mitochondrion."}],"publisher":"Royal Society of Chemistry"},{"issue":"1","isi":1,"article_processing_charge":"No","related_material":{"link":[{"url":"https://ist.ac.at/en/news/reading-rats-minds/","description":"News on IST Homepage","relation":"press_release"}],"record":[{"status":"public","relation":"dissertation_contains","id":"837"}]},"type":"journal_article","day":"02","department":[{"_id":"JoCs"}],"article_type":"original","volume":101,"oa_version":"Published Version","external_id":{"isi":["000454791500014"]},"publication":"Neuron","project":[{"call_identifier":"FP7","grant_number":"281511","_id":"257A4776-B435-11E9-9278-68D0E5697425","name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex"}],"status":"public","publication_identifier":{"issn":["10974199"]},"language":[{"iso":"eng"}],"doi":"10.1016/j.neuron.2018.11.015","intvolume":"       101","title":"Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze","quality_controlled":"1","page":"119-132.e4","oa":1,"main_file_link":[{"open_access":"1","url":"https://www.doi.org/10.1016/j.neuron.2018.11.015"}],"year":"2019","author":[{"full_name":"Xu, Haibing","first_name":"Haibing","last_name":"Xu","id":"310349D0-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Baracskay, Peter","id":"361CC00E-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","last_name":"Baracskay"},{"id":"426376DC-F248-11E8-B48F-1D18A9856A87","last_name":"O'Neill","first_name":"Joseph","full_name":"O'Neill, Joseph"},{"full_name":"Csicsvari, Jozsef L","last_name":"Csicsvari","first_name":"Jozsef L","orcid":"0000-0002-5193-4036","id":"3FA14672-F248-11E8-B48F-1D18A9856A87"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2019-01-13T22:59:10Z","publication_status":"published","ec_funded":1,"date_published":"2019-01-02T00:00:00Z","_id":"5828","month":"01","date_updated":"2023-09-07T12:06:37Z","scopus_import":"1","citation":{"mla":"Xu, Haibing, et al. “Assembly Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>, vol. 101, no. 1, Elsevier, 2019, p. 119–132.e4, doi:<a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">10.1016/j.neuron.2018.11.015</a>.","apa":"Xu, H., Baracskay, P., O’Neill, J., &#38; Csicsvari, J. L. (2019). Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">https://doi.org/10.1016/j.neuron.2018.11.015</a>","short":"H. Xu, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 101 (2019) 119–132.e4.","ama":"Xu H, Baracskay P, O’Neill J, Csicsvari JL. Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. <i>Neuron</i>. 2019;101(1):119-132.e4. doi:<a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">10.1016/j.neuron.2018.11.015</a>","chicago":"Xu, Haibing, Peter Baracskay, Joseph O’Neill, and Jozsef L Csicsvari. “Assembly Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.neuron.2018.11.015\">https://doi.org/10.1016/j.neuron.2018.11.015</a>.","ista":"Xu H, Baracskay P, O’Neill J, Csicsvari JL. 2019. Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze. Neuron. 101(1), 119–132.e4.","ieee":"H. Xu, P. Baracskay, J. O’Neill, and J. L. Csicsvari, “Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze,” <i>Neuron</i>, vol. 101, no. 1. Elsevier, p. 119–132.e4, 2019."},"abstract":[{"text":"Hippocampus is needed for both spatial working and reference memories. Here, using a radial eight-arm maze, we examined how the combined demand on these memories influenced CA1 place cell assemblies while reference memories were partially updated. This was contrasted with control tasks requiring only working memory or the update of reference memory. Reference memory update led to the reward-directed place field shifts at newly rewarded arms and to the gradual strengthening of firing in passes between newly rewarded arms but not between those passes that included a familiar-rewarded arm. At the maze center, transient network synchronization periods preferentially replayed trajectories of the next chosen arm in reference memory tasks but the previously visited arm in the working memory task. Hence, reference memory demand was uniquely associated with a gradual, goal novelty-related reorganization of place cell assemblies and with trajectory replay that reflected the animal's decision of which arm to visit next.","lang":"eng"}],"publisher":"Elsevier"},{"author":[{"last_name":"Moser","first_name":"Thomas","id":"2B5FC9A4-F248-11E8-B48F-1D18A9856A87","full_name":"Moser, Thomas"},{"full_name":"Seiringer, Robert","first_name":"Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"has_accepted_license":"1","year":"2019","date_created":"2019-01-20T22:59:17Z","publication_status":"published","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"5856","date_published":"2019-04-01T00:00:00Z","ec_funded":1,"scopus_import":"1","date_updated":"2023-09-07T12:37:42Z","month":"04","file_date_updated":"2020-07-14T12:47:12Z","citation":{"ista":"Moser T, Seiringer R. 2019. Energy contribution of a point-interacting impurity in a Fermi gas. Annales Henri Poincare. 20(4), 1325–1365.","ieee":"T. Moser and R. Seiringer, “Energy contribution of a point-interacting impurity in a Fermi gas,” <i>Annales Henri Poincare</i>, vol. 20, no. 4. Springer, pp. 1325–1365, 2019.","apa":"Moser, T., &#38; Seiringer, R. (2019). Energy contribution of a point-interacting impurity in a Fermi gas. <i>Annales Henri Poincare</i>. Springer. <a href=\"https://doi.org/10.1007/s00023-018-00757-0\">https://doi.org/10.1007/s00023-018-00757-0</a>","mla":"Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>, vol. 20, no. 4, Springer, 2019, pp. 1325–1365, doi:<a href=\"https://doi.org/10.1007/s00023-018-00757-0\">10.1007/s00023-018-00757-0</a>.","chicago":"Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>. Springer, 2019. <a href=\"https://doi.org/10.1007/s00023-018-00757-0\">https://doi.org/10.1007/s00023-018-00757-0</a>.","short":"T. Moser, R. Seiringer, Annales Henri Poincare 20 (2019) 1325–1365.","ama":"Moser T, Seiringer R. Energy contribution of a point-interacting impurity in a Fermi gas. <i>Annales Henri Poincare</i>. 2019;20(4):1325–1365. doi:<a href=\"https://doi.org/10.1007/s00023-018-00757-0\">10.1007/s00023-018-00757-0</a>"},"abstract":[{"lang":"eng","text":"We give a bound on the ground-state energy of a system of N non-interacting fermions in a three-dimensional cubic box interacting with an impurity particle via point interactions. We show that the change in energy compared to the system in the absence of the impurity is bounded in terms of the gas density and the scattering length of the interaction, independently of N. Our bound holds as long as the ratio of the mass of the impurity to the one of the gas particles is larger than a critical value m∗ ∗≈ 0.36 , which is the same regime for which we recently showed stability of the system."}],"publisher":"Springer","type":"journal_article","day":"01","related_material":{"record":[{"id":"52","relation":"dissertation_contains","status":"public"}]},"article_processing_charge":"Yes (via OA deal)","issue":"4","isi":1,"department":[{"_id":"RoSe"}],"article_type":"original","arxiv":1,"oa_version":"Published Version","volume":20,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication":"Annales Henri Poincare","external_id":{"isi":["000462444300008"],"arxiv":["1807.00739"]},"ddc":["530"],"status":"public","publication_identifier":{"issn":["14240637"]},"project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","grant_number":"694227","call_identifier":"H2020"},{"grant_number":"P27533_N27","call_identifier":"FWF","_id":"25C878CE-B435-11E9-9278-68D0E5697425","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"file":[{"date_created":"2019-01-28T15:27:17Z","file_id":"5894","file_size":859846,"content_type":"application/pdf","file_name":"2019_Annales_Moser.pdf","checksum":"255e42f957a8e2b10aad2499c750a8d6","access_level":"open_access","relation":"main_file","date_updated":"2020-07-14T12:47:12Z","creator":"dernst"}],"intvolume":"        20","doi":"10.1007/s00023-018-00757-0","language":[{"iso":"eng"}],"oa":1,"page":"1325–1365","quality_controlled":"1","title":"Energy contribution of a point-interacting impurity in a Fermi gas"},{"related_material":{"record":[{"id":"433","relation":"earlier_version","status":"public"}]},"isi":1,"issue":"4","article_processing_charge":"No","day":"30","type":"journal_article","department":[{"_id":"UlWa"}],"article_type":"original","volume":259,"arxiv":1,"oa_version":"Preprint","publication":"Discrete Applied Mathematics","external_id":{"isi":["000466061100020"],"arxiv":["1708.08037"]},"project":[{"name":"Eliminating intersections in drawings of graphs","_id":"261FA626-B435-11E9-9278-68D0E5697425","grant_number":"M02281","call_identifier":"FWF"}],"publication_identifier":{"issn":["0166218X"]},"status":"public","doi":"10.1016/j.dam.2018.12.025","language":[{"iso":"eng"}],"intvolume":"       259","quality_controlled":"1","title":"Thrackles: An improved upper bound","main_file_link":[{"url":"https://arxiv.org/abs/1708.08037","open_access":"1"}],"oa":1,"page":"266-231","year":"2019","author":[{"full_name":"Fulek, Radoslav","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8485-1774","last_name":"Fulek","first_name":"Radoslav"},{"full_name":"Pach, János","first_name":"János","last_name":"Pach"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","date_created":"2019-01-20T22:59:17Z","date_published":"2019-04-30T00:00:00Z","_id":"5857","date_updated":"2023-08-24T14:39:33Z","scopus_import":"1","month":"04","citation":{"ieee":"R. Fulek and J. Pach, “Thrackles: An improved upper bound,” <i>Discrete Applied Mathematics</i>, vol. 259, no. 4. Elsevier, pp. 266–231, 2019.","ista":"Fulek R, Pach J. 2019. Thrackles: An improved upper bound. Discrete Applied Mathematics. 259(4), 266–231.","chicago":"Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound.” <i>Discrete Applied Mathematics</i>. Elsevier, 2019. <a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">https://doi.org/10.1016/j.dam.2018.12.025</a>.","ama":"Fulek R, Pach J. Thrackles: An improved upper bound. <i>Discrete Applied Mathematics</i>. 2019;259(4):266-231. doi:<a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">10.1016/j.dam.2018.12.025</a>","short":"R. Fulek, J. Pach, Discrete Applied Mathematics 259 (2019) 266–231.","apa":"Fulek, R., &#38; Pach, J. (2019). Thrackles: An improved upper bound. <i>Discrete Applied Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">https://doi.org/10.1016/j.dam.2018.12.025</a>","mla":"Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound.” <i>Discrete Applied Mathematics</i>, vol. 259, no. 4, Elsevier, 2019, pp. 266–231, doi:<a href=\"https://doi.org/10.1016/j.dam.2018.12.025\">10.1016/j.dam.2018.12.025</a>."},"abstract":[{"text":"A thrackle is a graph drawn in the plane so that every pair of its edges meet exactly once: either at a common end vertex or in a proper crossing. We prove that any thrackle of n vertices has at most 1.3984n edges. Quasi-thrackles are defined similarly, except that every pair of edges that do not share a vertex are allowed to cross an odd number of times. It is also shown that the maximum number of edges of a quasi-thrackle on n vertices is [Formula presented](n−1), and that this bound is best possible for infinitely many values of n.","lang":"eng"}],"publisher":"Elsevier"},{"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","date_created":"2019-01-23T08:35:09Z","author":[{"orcid":"0000-0003-0423-5010","first_name":"Nazmi B","last_name":"Budanur","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87","full_name":"Budanur, Nazmi B"},{"full_name":"Fleury, Marc","first_name":"Marc","last_name":"Fleury"}],"year":"2019","publisher":"AIP Publishing","abstract":[{"lang":"eng","text":"We consider the motion of a droplet bouncing on a vibrating bath of the same fluid in the presence of a central potential. We formulate a rotation symmetry-reduced description of this system, which allows for the straightforward application of dynamical systems theory tools. As an illustration of the utility of the symmetry reduction, we apply it to a model of the pilot-wave system with a central harmonic force. We begin our analysis by identifying local bifurcations and the onset of chaos. We then describe the emergence of chaotic regions and their merging bifurcations, which lead to the formation of a global attractor. In this final regime, the droplet’s angular momentum spontaneously changes its sign as observed in the experiments of Perrard et al."}],"citation":{"ista":"Budanur NB, Fleury M. 2019. State space geometry of the chaotic pilot-wave hydrodynamics. Chaos: An Interdisciplinary Journal of Nonlinear Science. 29(1), 013122.","ieee":"N. B. Budanur and M. Fleury, “State space geometry of the chaotic pilot-wave hydrodynamics,” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 29, no. 1. AIP Publishing, 2019.","apa":"Budanur, N. B., &#38; Fleury, M. (2019). State space geometry of the chaotic pilot-wave hydrodynamics. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.5058279\">https://doi.org/10.1063/1.5058279</a>","mla":"Budanur, Nazmi B., and Marc Fleury. “State Space Geometry of the Chaotic Pilot-Wave Hydrodynamics.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>, vol. 29, no. 1, 013122, AIP Publishing, 2019, doi:<a href=\"https://doi.org/10.1063/1.5058279\">10.1063/1.5058279</a>.","chicago":"Budanur, Nazmi B, and Marc Fleury. “State Space Geometry of the Chaotic Pilot-Wave Hydrodynamics.” <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. AIP Publishing, 2019. <a href=\"https://doi.org/10.1063/1.5058279\">https://doi.org/10.1063/1.5058279</a>.","ama":"Budanur NB, Fleury M. State space geometry of the chaotic pilot-wave hydrodynamics. <i>Chaos: An Interdisciplinary Journal of Nonlinear Science</i>. 2019;29(1). doi:<a href=\"https://doi.org/10.1063/1.5058279\">10.1063/1.5058279</a>","short":"N.B. Budanur, M. Fleury, Chaos: An Interdisciplinary Journal of Nonlinear Science 29 (2019)."},"scopus_import":"1","date_updated":"2023-08-25T10:16:11Z","month":"01","_id":"5878","date_published":"2019-01-22T00:00:00Z","article_number":"013122","oa_version":"Preprint","arxiv":1,"volume":29,"article_type":"original","department":[{"_id":"BjHo"}],"day":"22","type":"journal_article","related_material":{"link":[{"relation":"erratum","url":"https://aip.scitation.org/doi/abs/10.1063/1.5097157"}]},"issue":"1","isi":1,"article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1812.09011"}],"oa":1,"quality_controlled":"1","title":"State space geometry of the chaotic pilot-wave hydrodynamics","intvolume":"        29","doi":"10.1063/1.5058279","language":[{"iso":"eng"}],"status":"public","publication_identifier":{"issn":["1054-1500"],"eissn":["1089-7682"]},"publication":"Chaos: An Interdisciplinary Journal of Nonlinear Science","external_id":{"arxiv":["1812.09011"],"isi":["000457409100028"]}},{"status":"public","publication_identifier":{"issn":["00268976"]},"project":[{"name":"Quantum rotations in the presence of a many-body environment","_id":"26031614-B435-11E9-9278-68D0E5697425","grant_number":"P29902","call_identifier":"FWF"},{"grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"publication":"Molecular Physics","external_id":{"isi":["000474641400008"]},"ddc":["530"],"oa":1,"quality_controlled":"1","title":"Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon","file":[{"date_updated":"2020-07-14T12:47:13Z","creator":"dernst","date_created":"2019-01-29T08:32:57Z","file_id":"5896","file_size":1309966,"content_type":"application/pdf","file_name":"2019_MolecularPhysics_Li.pdf","checksum":"178964744b636a6f036372f4f090a657","access_level":"open_access","relation":"main_file"}],"doi":"10.1080/00268976.2019.1567852","language":[{"iso":"eng"}],"department":[{"_id":"MiLe"}],"type":"journal_article","day":"18","related_material":{"record":[{"status":"public","id":"8958","relation":"dissertation_contains"}]},"isi":1,"article_processing_charge":"No","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"date_updated":"2023-09-07T13:16:42Z","scopus_import":"1","month":"01","_id":"5886","date_published":"2019-01-18T00:00:00Z","ec_funded":1,"publisher":"Taylor and Francis","abstract":[{"lang":"eng","text":"Problems involving quantum impurities, in which one or a few particles are interacting with a macroscopic environment, represent a pervasive paradigm, spanning across atomic, molecular, and condensed-matter physics. In this paper we introduce new variational approaches to quantum impurities and apply them to the Fröhlich polaron–a quasiparticle formed out of an electron (or other point-like impurity) in a polar medium, and to the angulon–a quasiparticle formed out of a rotating molecule in a bosonic bath. We benchmark these approaches against established theories, evaluating their accuracy as a function of the impurity-bath coupling."}],"citation":{"chicago":"Li, Xiang, Giacomo Bighin, Enderalp Yakaboylu, and Mikhail Lemeshko. “Variational Approaches to Quantum Impurities: From the Fröhlich Polaron to the Angulon.” <i>Molecular Physics</i>. Taylor and Francis, 2019. <a href=\"https://doi.org/10.1080/00268976.2019.1567852\">https://doi.org/10.1080/00268976.2019.1567852</a>.","ama":"Li X, Bighin G, Yakaboylu E, Lemeshko M. Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. <i>Molecular Physics</i>. 2019. doi:<a href=\"https://doi.org/10.1080/00268976.2019.1567852\">10.1080/00268976.2019.1567852</a>","short":"X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).","apa":"Li, X., Bighin, G., Yakaboylu, E., &#38; Lemeshko, M. (2019). Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. <i>Molecular Physics</i>. Taylor and Francis. <a href=\"https://doi.org/10.1080/00268976.2019.1567852\">https://doi.org/10.1080/00268976.2019.1567852</a>","mla":"Li, Xiang, et al. “Variational Approaches to Quantum Impurities: From the Fröhlich Polaron to the Angulon.” <i>Molecular Physics</i>, Taylor and Francis, 2019, doi:<a href=\"https://doi.org/10.1080/00268976.2019.1567852\">10.1080/00268976.2019.1567852</a>.","ieee":"X. Li, G. Bighin, E. Yakaboylu, and M. Lemeshko, “Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon,” <i>Molecular Physics</i>. Taylor and Francis, 2019.","ista":"Li X, Bighin G, Yakaboylu E, Lemeshko M. 2019. Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon. Molecular Physics."},"file_date_updated":"2020-07-14T12:47:13Z","author":[{"last_name":"Li","first_name":"Xiang","id":"4B7E523C-F248-11E8-B48F-1D18A9856A87","full_name":"Li, Xiang"},{"full_name":"Bighin, Giacomo","id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87","first_name":"Giacomo","last_name":"Bighin","orcid":"0000-0001-8823-9777"},{"full_name":"Yakaboylu, Enderalp","id":"38CB71F6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5973-0874","last_name":"Yakaboylu","first_name":"Enderalp"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","first_name":"Mikhail","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail"}],"has_accepted_license":"1","year":"2019","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","date_created":"2019-01-27T22:59:10Z"},{"issue":"1","article_processing_charge":"No","day":"1","type":"journal_article","department":[{"_id":"KrPi"}],"article_type":"original","volume":27,"oa_version":"Preprint","publication":"Journal of Computer Security","project":[{"name":"Teaching Old Crypto New Tricks","_id":"258AA5B2-B435-11E9-9278-68D0E5697425","grant_number":"682815","call_identifier":"H2020"}],"publication_identifier":{"issn":["0926227X"]},"status":"public","doi":"10.3233/JCS-181131","language":[{"iso":"eng"}],"intvolume":"        27","quality_controlled":"1","title":"Per-session security: Password-based cryptography revisited","oa":1,"main_file_link":[{"url":"https://eprint.iacr.org/2016/166","open_access":"1"}],"page":"75-111","year":"2019","author":[{"first_name":"Gregory","last_name":"Demay","full_name":"Demay, Gregory"},{"full_name":"Gazi, Peter","first_name":"Peter","last_name":"Gazi","id":"3E0BFE38-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Maurer","first_name":"Ueli","full_name":"Maurer, Ueli"},{"full_name":"Tackmann, Bjorn","first_name":"Bjorn","last_name":"Tackmann"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2019-01-27T22:59:10Z","date_published":"2019-01-01T00:00:00Z","ec_funded":1,"_id":"5887","scopus_import":"1","date_updated":"2021-01-12T08:05:08Z","month":"01","abstract":[{"text":"Cryptographic security is usually defined as a guarantee that holds except when a bad event with negligible probability occurs, and nothing is guaranteed in that bad case. However, in settings where such failure can happen with substantial probability, one needs to provide guarantees even for the bad case. A typical example is where a (possibly weak) password is used instead of a secure cryptographic key to protect a session, the bad event being that the adversary correctly guesses the password. In a situation with multiple such sessions, a per-session guarantee is desired: any session for which the password has not been guessed remains secure, independently of whether other sessions have been compromised. A new formalism for stating such gracefully degrading security guarantees is introduced and applied to analyze the examples of password-based message authentication and password-based encryption. While a natural per-message guarantee is achieved for authentication, the situation of password-based encryption is more delicate: a per-session confidentiality guarantee only holds against attackers for which the distribution of password-guessing effort over the sessions is known in advance. In contrast, for more general attackers without such a restriction, a strong, composable notion of security cannot be achieved.","lang":"eng"}],"citation":{"ieee":"G. Demay, P. Gazi, U. Maurer, and B. Tackmann, “Per-session security: Password-based cryptography revisited,” <i>Journal of Computer Security</i>, vol. 27, no. 1. IOS Press, pp. 75–111, 2019.","ista":"Demay G, Gazi P, Maurer U, Tackmann B. 2019. Per-session security: Password-based cryptography revisited. Journal of Computer Security. 27(1), 75–111.","chicago":"Demay, Gregory, Peter Gazi, Ueli Maurer, and Bjorn Tackmann. “Per-Session Security: Password-Based Cryptography Revisited.” <i>Journal of Computer Security</i>. IOS Press, 2019. <a href=\"https://doi.org/10.3233/JCS-181131\">https://doi.org/10.3233/JCS-181131</a>.","ama":"Demay G, Gazi P, Maurer U, Tackmann B. Per-session security: Password-based cryptography revisited. <i>Journal of Computer Security</i>. 2019;27(1):75-111. doi:<a href=\"https://doi.org/10.3233/JCS-181131\">10.3233/JCS-181131</a>","short":"G. Demay, P. Gazi, U. Maurer, B. Tackmann, Journal of Computer Security 27 (2019) 75–111.","apa":"Demay, G., Gazi, P., Maurer, U., &#38; Tackmann, B. (2019). Per-session security: Password-based cryptography revisited. <i>Journal of Computer Security</i>. IOS Press. <a href=\"https://doi.org/10.3233/JCS-181131\">https://doi.org/10.3233/JCS-181131</a>","mla":"Demay, Gregory, et al. “Per-Session Security: Password-Based Cryptography Revisited.” <i>Journal of Computer Security</i>, vol. 27, no. 1, IOS Press, 2019, pp. 75–111, doi:<a href=\"https://doi.org/10.3233/JCS-181131\">10.3233/JCS-181131</a>."},"publisher":"IOS Press"},{"oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1807.04285","open_access":"1"}],"title":"Analytically solvable renormalization group for the many-body localization transition","quality_controlled":"1","intvolume":"       122","language":[{"iso":"eng"}],"doi":"10.1103/physrevlett.122.040601","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"status":"public","external_id":{"isi":["000456783700001"],"arxiv":["1807.04285"]},"publication":"Physical Review Letters","oa_version":"Preprint","arxiv":1,"article_number":"040601","volume":122,"article_type":"original","department":[{"_id":"MaSe"}],"day":"01","type":"journal_article","article_processing_charge":"No","issue":"4","isi":1,"publisher":"American Physical Society","abstract":[{"lang":"eng","text":"We introduce a simple, exactly solvable strong-randomness renormalization group (RG) model for the many-body localization (MBL) transition in one dimension. Our approach relies on a family of RG flows parametrized by the asymmetry between thermal and localized phases. We identify the physical MBL transition in the limit of maximal asymmetry, reflecting the instability of MBL against rare thermal inclusions. We find a critical point that is localized with power-law distributed thermal inclusions. The typical size of critical inclusions remains finite at the transition, while the average size is logarithmically diverging. We propose a two-parameter scaling theory for the many-body localization transition that falls into the Kosterlitz-Thouless universality class, with the MBL phase corresponding to a stable line of fixed points with multifractal behavior."}],"citation":{"ieee":"A. Goremykina, R. Vasseur, and M. Serbyn, “Analytically solvable renormalization group for the many-body localization transition,” <i>Physical Review Letters</i>, vol. 122, no. 4. American Physical Society, 2019.","ista":"Goremykina A, Vasseur R, Serbyn M. 2019. Analytically solvable renormalization group for the many-body localization transition. Physical Review Letters. 122(4), 040601.","ama":"Goremykina A, Vasseur R, Serbyn M. Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. 2019;122(4). doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>","short":"A. Goremykina, R. Vasseur, M. Serbyn, Physical Review Letters 122 (2019).","chicago":"Goremykina, Anna, Romain Vasseur, and Maksym Serbyn. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>. American Physical Society, 2019. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>.","mla":"Goremykina, Anna, et al. “Analytically Solvable Renormalization Group for the Many-Body Localization Transition.” <i>Physical Review Letters</i>, vol. 122, no. 4, 040601, American Physical Society, 2019, doi:<a href=\"https://doi.org/10.1103/physrevlett.122.040601\">10.1103/physrevlett.122.040601</a>.","apa":"Goremykina, A., Vasseur, R., &#38; Serbyn, M. (2019). Analytically solvable renormalization group for the many-body localization transition. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.122.040601\">https://doi.org/10.1103/physrevlett.122.040601</a>"},"month":"02","date_updated":"2024-02-28T13:13:38Z","scopus_import":"1","_id":"5906","date_published":"2019-02-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2019-02-01T08:22:28Z","author":[{"last_name":"Goremykina","first_name":"Anna","full_name":"Goremykina, Anna"},{"first_name":"Romain","last_name":"Vasseur","full_name":"Vasseur, Romain"},{"full_name":"Serbyn, Maksym","last_name":"Serbyn","orcid":"0000-0002-2399-5827","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}],"year":"2019"}]