[{"type":"journal_article","author":[{"last_name":"Rademacher","first_name":"Simone Anna Elvira","full_name":"Rademacher, Simone Anna Elvira","id":"856966FE-A408-11E9-977E-802DE6697425","orcid":"0000-0001-5059-4466"}],"file_date_updated":"2020-11-20T12:04:26Z","doi":"10.1007/s11005-020-01286-w","publisher":"Springer Nature","ddc":["510"],"acknowledgement":"Simone Rademacher acknowledges partial support from the NCCR SwissMAP. This project has received\r\nfunding from the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R. would like to thank Benjamin Schlein for many fruitful discussions.","title":"Central limit theorem for Bose gases interacting through singular potentials","status":"public","year":"2020","has_accepted_license":"1","oa_version":"Published Version","month":"03","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"Yes (via OA deal)","_id":"7611","publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]},"page":"2143-2174","file":[{"file_size":478683,"date_updated":"2020-11-20T12:04:26Z","date_created":"2020-11-20T12:04:26Z","success":1,"file_id":"8784","creator":"dernst","file_name":"2020_LettersMathPhysics_Rademacher.pdf","checksum":"3bdd41f10ad947b67a45b98f507a7d4a","access_level":"open_access","relation":"main_file","content_type":"application/pdf"}],"article_type":"original","external_id":{"isi":["000551556000006"]},"date_updated":"2023-09-05T15:14:50Z","quality_controlled":"1","date_published":"2020-03-12T00:00:00Z","language":[{"iso":"eng"}],"isi":1,"day":"12","scopus_import":"1","citation":{"short":"S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.","ista":"Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through singular potentials. Letters in Mathematical Physics. 110, 2143–2174.","ama":"Rademacher SAE. Central limit theorem for Bose gases interacting through singular potentials. Letters in Mathematical Physics. 2020;110:2143-2174. doi:10.1007/s11005-020-01286-w","mla":"Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting through Singular Potentials.” Letters in Mathematical Physics, vol. 110, Springer Nature, 2020, pp. 2143–74, doi:10.1007/s11005-020-01286-w.","chicago":"Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting through Singular Potentials.” Letters in Mathematical Physics. Springer Nature, 2020. https://doi.org/10.1007/s11005-020-01286-w.","ieee":"S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through singular potentials,” Letters in Mathematical Physics, vol. 110. Springer Nature, pp. 2143–2174, 2020.","apa":"Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting through singular potentials. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-020-01286-w"},"department":[{"_id":"RoSe"}],"publication":"Letters in Mathematical Physics","ec_funded":1,"oa":1,"abstract":[{"text":"We consider a system of N bosons in the limit N→∞, interacting through singular potentials. For initial data exhibiting Bose–Einstein condensation, the many-body time evolution is well approximated through a quadratic fluctuation dynamics around a cubic nonlinear Schrödinger equation of the condensate wave function. We show that these fluctuations satisfy a (multi-variate) central limit theorem.","lang":"eng"}],"publication_status":"published","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"date_created":"2020-03-23T11:11:47Z","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","intvolume":" 110","volume":110},{"publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]},"_id":"7618","article_processing_charge":"No","month":"08","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2020-08-01T00:00:00Z","date_updated":"2023-08-18T10:17:26Z","external_id":{"isi":["000551556000002"],"arxiv":["1903.10455"]},"article_type":"original","issue":"8","page":"2039-2052","main_file_link":[{"url":"https://arxiv.org/abs/1903.10455","open_access":"1"}],"author":[{"full_name":"Pitrik, Jozsef","first_name":"Jozsef","last_name":"Pitrik"},{"orcid":"0000-0003-1109-5511","id":"48DB45DA-F248-11E8-B48F-1D18A9856A87","last_name":"Virosztek","first_name":"Daniel","full_name":"Virosztek, Daniel"}],"type":"journal_article","oa_version":"Preprint","year":"2020","title":"Quantum Hellinger distances revisited","status":"public","acknowledgement":"J. Pitrik was supported by the Hungarian Academy of Sciences Lendület-Momentum Grant for Quantum\r\nInformation Theory, No. 96 141, and by the Hungarian National Research, Development and Innovation\r\nOffice (NKFIH) via Grants Nos. K119442, K124152 and KH129601. D. Virosztek was supported by the\r\nISTFELLOW program of the Institute of Science and Technology Austria (Project Code IC1027FELL01),\r\nby the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSklodowska-Curie Grant Agreement No. 846294, and partially supported by the Hungarian National\r\nResearch, Development and Innovation Office (NKFIH) via Grants Nos. K124152 and KH129601.\r\nWe are grateful to Milán Mosonyi for drawing our attention to Ref.’s [6,14,15,17,\r\n20,21], for comments on earlier versions of this paper, and for several discussions on the topic. We are\r\nalso grateful to Miklós Pálfia for several discussions; to László Erdös for his essential suggestions on the\r\nstructure and highlights of this paper, and for his comments on earlier versions; and to the anonymous\r\nreferee for his/her valuable comments and suggestions.","publisher":"Springer Nature","doi":"10.1007/s11005-020-01282-0","project":[{"call_identifier":"H2020","_id":"26A455A6-B435-11E9-9278-68D0E5697425","name":"Geometric study of Wasserstein spaces and free probability","grant_number":"846294"},{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"arxiv":1,"abstract":[{"lang":"eng","text":"This short note aims to study quantum Hellinger distances investigated recently by Bhatia et al. (Lett Math Phys 109:1777–1804, 2019) with a particular emphasis on barycenters. We introduce the family of generalized quantum Hellinger divergences that are of the form ϕ(A,B)=Tr((1−c)A+cB−AσB), where σ is an arbitrary Kubo–Ando mean, and c∈(0,1) is the weight of σ. We note that these divergences belong to the family of maximal quantum f-divergences, and hence are jointly convex, and satisfy the data processing inequality. We derive a characterization of the barycenter of finitely many positive definite operators for these generalized quantum Hellinger divergences. We note that the characterization of the barycenter as the weighted multivariate 1/2-power mean, that was claimed in Bhatia et al. (2019), is true in the case of commuting operators, but it is not correct in the general case. "}],"publication_status":"published","intvolume":" 110","volume":110,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2020-03-25T15:57:48Z","scopus_import":"1","day":"01","isi":1,"ec_funded":1,"oa":1,"publication":"Letters in Mathematical Physics","department":[{"_id":"LaEr"}],"citation":{"mla":"Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.” Letters in Mathematical Physics, vol. 110, no. 8, Springer Nature, 2020, pp. 2039–52, doi:10.1007/s11005-020-01282-0.","chicago":"Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.” Letters in Mathematical Physics. Springer Nature, 2020. https://doi.org/10.1007/s11005-020-01282-0.","apa":"Pitrik, J., & Virosztek, D. (2020). Quantum Hellinger distances revisited. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-020-01282-0","ieee":"J. Pitrik and D. Virosztek, “Quantum Hellinger distances revisited,” Letters in Mathematical Physics, vol. 110, no. 8. Springer Nature, pp. 2039–2052, 2020.","short":"J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.","ista":"Pitrik J, Virosztek D. 2020. Quantum Hellinger distances revisited. Letters in Mathematical Physics. 110(8), 2039–2052.","ama":"Pitrik J, Virosztek D. Quantum Hellinger distances revisited. Letters in Mathematical Physics. 2020;110(8):2039-2052. doi:10.1007/s11005-020-01282-0"}},{"oa_version":"Published Version","year":"2020","status":"public","title":"Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters","publisher":"American Society of Plant Biologists","doi":"10.1105/tpc.19.00869","main_file_link":[{"url":"https://doi.org/10.1105/tpc.19.00869","open_access":"1"}],"author":[{"id":"61A66458-47E9-11EA-85BA-8AEAAF14E49A","full_name":"Zhang, Xixi","first_name":"Xixi","last_name":"Zhang","orcid":"0000-0001-7048-4627"},{"id":"45F536D2-F248-11E8-B48F-1D18A9856A87","first_name":"Maciek","last_name":"Adamowski","full_name":"Adamowski, Maciek","orcid":"0000-0001-6463-5257"},{"id":"44E59624-F248-11E8-B48F-1D18A9856A87","full_name":"Marhavá, Petra","last_name":"Marhavá","first_name":"Petra"},{"id":"2DE75584-F248-11E8-B48F-1D18A9856A87","first_name":"Shutang","last_name":"Tan","full_name":"Tan, Shutang","orcid":"0000-0002-0471-8285"},{"id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","last_name":"Zhang","first_name":"Yuzhou","full_name":"Zhang, Yuzhou","orcid":"0000-0003-2627-6956"},{"orcid":"0000-0002-7244-7237","full_name":"Rodriguez Solovey, Lesia","last_name":"Rodriguez Solovey","first_name":"Lesia","id":"3922B506-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Zwiewka","first_name":"Marta","full_name":"Zwiewka, Marta"},{"last_name":"Pukyšová","first_name":"Vendula","full_name":"Pukyšová, Vendula"},{"first_name":"Adrià Sans","last_name":"Sánchez","full_name":"Sánchez, Adrià Sans"},{"last_name":"Raxwal","first_name":"Vivek Kumar","full_name":"Raxwal, Vivek Kumar"},{"first_name":"Christian S.","last_name":"Hardtke","full_name":"Hardtke, Christian S."},{"first_name":"Tomasz","last_name":"Nodzynski","full_name":"Nodzynski, Tomasz"},{"orcid":"0000-0002-8302-7596","first_name":"Jiří","last_name":"Friml","full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2020-05-01T00:00:00Z","date_updated":"2023-09-05T12:21:06Z","external_id":{"pmid":["32193204"],"isi":["000545741500030"]},"article_type":"original","page":"1644-1664","issue":"5","publication_identifier":{"issn":["1040-4651"],"eissn":["1532-298X"]},"_id":"7619","article_processing_charge":"No","month":"05","oa":1,"ec_funded":1,"publication":"The Plant Cell","citation":{"ista":"Zhang X, Adamowski M, Marhavá P, Tan S, Zhang Y, Rodriguez Solovey L, Zwiewka M, Pukyšová V, Sánchez AS, Raxwal VK, Hardtke CS, Nodzynski T, Friml J. 2020. Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. The Plant Cell. 32(5), 1644–1664.","ama":"Zhang X, Adamowski M, Marhavá P, et al. Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. The Plant Cell. 2020;32(5):1644-1664. doi:10.1105/tpc.19.00869","short":"X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey, M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski, J. Friml, The Plant Cell 32 (2020) 1644–1664.","ieee":"X. Zhang et al., “Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters,” The Plant Cell, vol. 32, no. 5. American Society of Plant Biologists, pp. 1644–1664, 2020.","apa":"Zhang, X., Adamowski, M., Marhavá, P., Tan, S., Zhang, Y., Rodriguez Solovey, L., … Friml, J. (2020). Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters. The Plant Cell. American Society of Plant Biologists. https://doi.org/10.1105/tpc.19.00869","chicago":"Zhang, Xixi, Maciek Adamowski, Petra Marhavá, Shutang Tan, Yuzhou Zhang, Lesia Rodriguez Solovey, Marta Zwiewka, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” The Plant Cell. American Society of Plant Biologists, 2020. https://doi.org/10.1105/tpc.19.00869.","mla":"Zhang, Xixi, et al. “Arabidopsis Flippases Cooperate with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters.” The Plant Cell, vol. 32, no. 5, American Society of Plant Biologists, 2020, pp. 1644–64, doi:10.1105/tpc.19.00869."},"department":[{"_id":"JiFr"}],"acknowledged_ssus":[{"_id":"Bio"}],"day":"01","scopus_import":"1","isi":1,"volume":32,"intvolume":" 32","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_created":"2020-03-28T07:39:22Z","pmid":1,"project":[{"grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","call_identifier":"H2020"},{"name":"Molecular mechanisms of endocytic cargo recognition in plants","grant_number":"I03630","_id":"26538374-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"publication_status":"published","abstract":[{"lang":"eng","text":"Cell polarity is a fundamental feature of all multicellular organisms. In plants, prominent cell polarity markers are PIN auxin transporters crucial for plant development. To identify novel components involved in cell polarity establishment and maintenance, we carried out a forward genetic screening with PIN2:PIN1-HA;pin2 Arabidopsis plants, which ectopically express predominantly basally localized PIN1 in the root epidermal cells leading to agravitropic root growth. From the screen, we identified the regulator of PIN polarity 12 (repp12) mutation, which restored gravitropic root growth and caused PIN1-HA polarity switch from basal to apical side of root epidermal cells. Complementation experiments established the repp12 causative mutation as an amino acid substitution in Aminophospholipid ATPase3 (ALA3), a phospholipid flippase with predicted function in vesicle formation. ala3 T-DNA mutants show defects in many auxin-regulated processes, in asymmetric auxin distribution and in PIN trafficking. Analysis of quintuple and sextuple mutants confirmed a crucial role of ALA proteins in regulating plant development and in PIN trafficking and polarity. Genetic and physical interaction studies revealed that ALA3 functions together with GNOM and BIG3 ARF GEFs. Taken together, our results identified ALA3 flippase as an important interactor and regulator of ARF GEF functioning in PIN polarity, trafficking and auxin-mediated development."}]},{"has_accepted_license":"1","oa_version":"Published Version","doi":"10.1088/1361-6404/ab6414","publisher":"IOP Publishing","ddc":["530"],"year":"2020","status":"public","title":"The IYPT and the 'Ring Oiler' problem","author":[{"full_name":"Plesch, Martin","last_name":"Plesch","first_name":"Martin"},{"full_name":"Plesník, Samuel","first_name":"Samuel","last_name":"Plesník"},{"full_name":"Ruzickova, Natalia","last_name":"Ruzickova","first_name":"Natalia","id":"D2761128-D73D-11E9-A1BF-BA0DE6697425"}],"file_date_updated":"2020-07-14T12:48:01Z","type":"journal_article","date_published":"2020-02-24T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"issue":"3","file":[{"file_name":"2020_EuropJourPhysics_Plesch.pdf","checksum":"47dda164e33b6c0c6c3ed14aad298376","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_size":1533672,"date_updated":"2020-07-14T12:48:01Z","date_created":"2020-04-06T08:53:53Z","file_id":"7641","creator":"dernst"}],"article_type":"original","external_id":{"arxiv":["1910.03290"],"isi":["000537425400001"]},"date_updated":"2023-08-18T10:18:29Z","publication_identifier":{"eissn":["13616404"],"issn":["01430807"]},"month":"02","article_processing_charge":"No","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"7622","oa":1,"citation":{"ista":"Plesch M, Plesník S, Ruzickova N. 2020. The IYPT and the ‘Ring Oiler’ problem. European Journal of Physics. 41(3), 034001.","ama":"Plesch M, Plesník S, Ruzickova N. The IYPT and the “Ring Oiler” problem. European Journal of Physics. 2020;41(3). doi:10.1088/1361-6404/ab6414","short":"M. Plesch, S. Plesník, N. Ruzickova, European Journal of Physics 41 (2020).","ieee":"M. Plesch, S. Plesník, and N. Ruzickova, “The IYPT and the ‘Ring Oiler’ problem,” European Journal of Physics, vol. 41, no. 3. IOP Publishing, 2020.","apa":"Plesch, M., Plesník, S., & Ruzickova, N. (2020). The IYPT and the “Ring Oiler” problem. European Journal of Physics. IOP Publishing. https://doi.org/10.1088/1361-6404/ab6414","chicago":"Plesch, Martin, Samuel Plesník, and Natalia Ruzickova. “The IYPT and the ‘Ring Oiler’ Problem.” European Journal of Physics. IOP Publishing, 2020. https://doi.org/10.1088/1361-6404/ab6414.","mla":"Plesch, Martin, et al. “The IYPT and the ‘Ring Oiler’ Problem.” European Journal of Physics, vol. 41, no. 3, 034001, IOP Publishing, 2020, doi:10.1088/1361-6404/ab6414."},"department":[{"_id":"FyKo"}],"publication":"European Journal of Physics","isi":1,"scopus_import":"1","day":"24","date_created":"2020-03-31T11:25:04Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","intvolume":" 41","volume":41,"article_number":"034001","arxiv":1,"publication_status":"published","abstract":[{"text":"The International Young Physicists' Tournament (IYPT) continued in 2018 in Beijing, China and 2019 in Warsaw, Poland with its 31st and 32nd editions. The IYPT is a modern scientific competition for teams of high school students, also known as the Physics World Cup. It involves long-term theoretical and experimental work focused on solving 17 publicly announced open-ended problems in teams of five. On top of that, teams have to present their solutions in front of other teams and a scientific jury, and get opposed and reviewed by their peers. Here we present a brief information about the competition with a specific focus on one of the IYPT 2018 tasks, the 'Ring Oiler'. This seemingly simple mechanical problem appeared to be of such a complexity that even the dozens of participating teams and jurying scientists were not able to solve all of its subtleties.","lang":"eng"}]},{"quality_controlled":"1","date_published":"2020-03-18T00:00:00Z","language":[{"iso":"eng"}],"issue":"3","page":"513-537","date_updated":"2023-08-18T10:18:56Z","external_id":{"arxiv":["1903.09426"],"isi":["000525349900003"]},"article_type":"original","publication_identifier":{"issn":["02182025"]},"article_processing_charge":"No","month":"03","_id":"7623","oa_version":"Preprint","publisher":"World Scientific","doi":"10.1142/S021820252050013X","title":"Modeling adhesion-independent cell migration","year":"2020","status":"public","acknowledgement":"This work has been supported by the Vienna Science and Technology Fund, Grant no. LS13-029. G.J. and C.S. also acknowledge support by the Austrian Science Fund, Grants no. W1245, F 65, and W1261, as well as by the Fondation Sciences Mathématiques de Paris, and by Paris-Sciences-et-Lettres.","author":[{"full_name":"Jankowiak, Gaspard","last_name":"Jankowiak","first_name":"Gaspard"},{"last_name":"Peurichard","first_name":"Diane","full_name":"Peurichard, Diane"},{"orcid":"0000-0003-0666-8928","full_name":"Reversat, Anne","first_name":"Anne","last_name":"Reversat","id":"35B76592-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Christian","last_name":"Schmeiser","full_name":"Schmeiser, Christian"},{"orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K","last_name":"Sixt","first_name":"Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87"}],"main_file_link":[{"url":"https://arxiv.org/abs/1903.09426","open_access":"1"}],"type":"journal_article","date_created":"2020-03-31T11:25:05Z","intvolume":" 30","volume":30,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","arxiv":1,"project":[{"grant_number":"LS13-029","name":"Modeling of Polarization and Motility of Leukocytes in Three-Dimensional Environments","_id":"25AD6156-B435-11E9-9278-68D0E5697425"}],"abstract":[{"lang":"eng","text":"A two-dimensional mathematical model for cells migrating without adhesion capabilities is presented and analyzed. Cells are represented by their cortex, which is modeled as an elastic curve, subject to an internal pressure force. Net polymerization or depolymerization in the cortex is modeled via local addition or removal of material, driving a cortical flow. The model takes the form of a fully nonlinear degenerate parabolic system. An existence analysis is carried out by adapting ideas from the theory of gradient flows. Numerical simulations show that these simple rules can account for the behavior observed in experiments, suggesting a possible mechanical mechanism for adhesion-independent motility."}],"publication_status":"published","oa":1,"citation":{"ista":"Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. 2020. Modeling adhesion-independent cell migration. Mathematical Models and Methods in Applied Sciences. 30(3), 513–537.","ama":"Jankowiak G, Peurichard D, Reversat A, Schmeiser C, Sixt MK. Modeling adhesion-independent cell migration. Mathematical Models and Methods in Applied Sciences. 2020;30(3):513-537. doi:10.1142/S021820252050013X","short":"G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, M.K. Sixt, Mathematical Models and Methods in Applied Sciences 30 (2020) 513–537.","chicago":"Jankowiak, Gaspard, Diane Peurichard, Anne Reversat, Christian Schmeiser, and Michael K Sixt. “Modeling Adhesion-Independent Cell Migration.” Mathematical Models and Methods in Applied Sciences. World Scientific, 2020. https://doi.org/10.1142/S021820252050013X.","mla":"Jankowiak, Gaspard, et al. “Modeling Adhesion-Independent Cell Migration.” Mathematical Models and Methods in Applied Sciences, vol. 30, no. 3, World Scientific, 2020, pp. 513–37, doi:10.1142/S021820252050013X.","ieee":"G. Jankowiak, D. Peurichard, A. Reversat, C. Schmeiser, and M. K. Sixt, “Modeling adhesion-independent cell migration,” Mathematical Models and Methods in Applied Sciences, vol. 30, no. 3. World Scientific, pp. 513–537, 2020.","apa":"Jankowiak, G., Peurichard, D., Reversat, A., Schmeiser, C., & Sixt, M. K. (2020). Modeling adhesion-independent cell migration. Mathematical Models and Methods in Applied Sciences. World Scientific. https://doi.org/10.1142/S021820252050013X"},"department":[{"_id":"MiSi"}],"publication":"Mathematical Models and Methods in Applied Sciences","isi":1,"day":"18","scopus_import":"1"},{"project":[{"call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425"}],"supervisor":[{"last_name":"Maas","first_name":"Jan","full_name":"Maas, Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338"}],"publication_status":"published","abstract":[{"text":"This thesis is based on three main topics: In the first part, we study convergence of discrete gradient flow structures associated with regular finite-volume discretisations of Fokker-Planck equations. We show evolutionary I convergence of the discrete gradient flows to the L2-Wasserstein gradient flow corresponding to the solution of a Fokker-Planck\r\nequation in arbitrary dimension d >= 1. Along the argument, we prove Mosco- and I-convergence results for discrete energy functionals, which are of independent interest for convergence of equivalent gradient flow structures in Hilbert spaces.\r\nThe second part investigates L2-Wasserstein flows on metric graph. The starting point is a Benamou-Brenier formula for the L2-Wasserstein distance, which is proved via a regularisation scheme for solutions of the continuity equation, adapted to the peculiar geometric structure of metric graphs. Based on those results, we show that the L2-Wasserstein space over a metric graph admits a gradient flow which may be identified as a solution of a Fokker-Planck equation.\r\nIn the third part, we focus again on the discrete gradient flows, already encountered in the first part. We propose a variational structure which extends the gradient flow structure to Markov chains violating the detailed-balance conditions. Using this structure, we characterise contraction estimates for the discrete heat flow in terms of convexity of\r\ncorresponding path-dependent energy functionals. In addition, we use this approach to derive several functional inequalities for said functionals.","lang":"eng"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_created":"2020-04-02T06:40:23Z","degree_awarded":"PhD","alternative_title":["ISTA Thesis"],"day":"31","ec_funded":1,"oa":1,"citation":{"apa":"Forkert, D. L. (2020). Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7629","ieee":"D. L. Forkert, “Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains,” Institute of Science and Technology Austria, 2020.","mla":"Forkert, Dominik L. Gradient Flows in Spaces of Probability Measures for Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7629.","chicago":"Forkert, Dominik L. “Gradient Flows in Spaces of Probability Measures for Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7629.","short":"D.L. Forkert, Gradient Flows in Spaces of Probability Measures for Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains, Institute of Science and Technology Austria, 2020.","ista":"Forkert DL. 2020. Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains. Institute of Science and Technology Austria.","ama":"Forkert DL. Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains. 2020. doi:10.15479/AT:ISTA:7629"},"department":[{"_id":"JaMa"}],"publication_identifier":{"issn":["2663-337X"]},"_id":"7629","month":"03","article_processing_charge":"No","language":[{"iso":"eng"}],"date_published":"2020-03-31T00:00:00Z","date_updated":"2023-09-07T13:03:12Z","page":"154","file":[{"date_updated":"2020-07-14T12:48:01Z","file_size":3297129,"creator":"dernst","file_id":"7657","date_created":"2020-04-14T10:47:59Z","relation":"main_file","checksum":"c814a1a6195269ca6fe48b0dca45ae8a","access_level":"open_access","file_name":"Thesis_Forkert_PDFA.pdf","content_type":"application/pdf"},{"relation":"source_file","access_level":"closed","checksum":"ceafb53f923d1b5bdf14b2b0f22e4a81","file_name":"Thesis_Forkert_source.zip","content_type":"application/x-zip-compressed","date_updated":"2020-07-14T12:48:01Z","file_size":1063908,"file_id":"7658","creator":"dernst","date_created":"2020-04-14T10:47:59Z"}],"file_date_updated":"2020-07-14T12:48:01Z","author":[{"last_name":"Forkert","first_name":"Dominik L","full_name":"Forkert, Dominik L","id":"35C79D68-F248-11E8-B48F-1D18A9856A87"}],"type":"dissertation","oa_version":"Published Version","has_accepted_license":"1","year":"2020","title":"Gradient flows in spaces of probability measures for finite-volume schemes, metric graphs and non-reversible Markov chains","status":"public","doi":"10.15479/AT:ISTA:7629","publisher":"Institute of Science and Technology Austria","ddc":["510"]},{"publisher":"Springer Nature","ddc":["570"],"doi":"10.1038/s41598-020-62089-6","status":"public","title":"Action representation in the mouse parieto-frontal network","year":"2020","has_accepted_license":"1","oa_version":"Published Version","type":"journal_article","author":[{"first_name":"Tuce","last_name":"Tombaz","full_name":"Tombaz, Tuce"},{"last_name":"Dunn","first_name":"Benjamin A.","full_name":"Dunn, Benjamin A."},{"last_name":"Hovde","first_name":"Karoline","full_name":"Hovde, Karoline"},{"id":"850B2E12-9CD4-11E9-837F-E719E6697425","full_name":"Cubero, Ryan J","first_name":"Ryan J","last_name":"Cubero","orcid":"0000-0003-0002-1867"},{"last_name":"Mimica","first_name":"Bartul","full_name":"Mimica, Bartul"},{"first_name":"Pranav","last_name":"Mamidanna","full_name":"Mamidanna, Pranav"},{"full_name":"Roudi, Yasser","last_name":"Roudi","first_name":"Yasser"},{"full_name":"Whitlock, Jonathan R.","first_name":"Jonathan R.","last_name":"Whitlock"}],"file_date_updated":"2020-07-14T12:48:01Z","file":[{"file_id":"7644","creator":"dernst","date_created":"2020-04-06T10:44:23Z","date_updated":"2020-07-14T12:48:01Z","file_size":2621249,"content_type":"application/pdf","relation":"main_file","checksum":"e6cfaaaf7986532132934400038b824a","access_level":"open_access","file_name":"2020_ScientificReports_Tombaz.pdf"}],"issue":"1","external_id":{"isi":["000560406800007"]},"date_updated":"2023-08-18T10:25:13Z","article_type":"original","date_published":"2020-03-27T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","month":"03","_id":"7632","publication_identifier":{"eissn":["20452322"]},"citation":{"ista":"Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock JR. 2020. Action representation in the mouse parieto-frontal network. Scientific reports. 10(1), 5559.","ama":"Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal network. Scientific reports. 2020;10(1). doi:10.1038/s41598-020-62089-6","short":"T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020).","apa":"Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P., … Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-020-62089-6","ieee":"T. Tombaz et al., “Action representation in the mouse parieto-frontal network,” Scientific reports, vol. 10, no. 1. Springer Nature, 2020.","chicago":"Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica, Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation in the Mouse Parieto-Frontal Network.” Scientific Reports. Springer Nature, 2020. https://doi.org/10.1038/s41598-020-62089-6.","mla":"Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.” Scientific Reports, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:10.1038/s41598-020-62089-6."},"department":[{"_id":"SaSi"}],"publication":"Scientific reports","oa":1,"isi":1,"day":"27","scopus_import":"1","date_created":"2020-04-05T22:00:47Z","volume":10,"intvolume":" 10","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","publication_status":"published","abstract":[{"text":"The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical network supporting goal-directed behaviour, with functions including sensorimotor transformations and decision making. In primates, this network links performed and observed actions via mirror neurons, which fire both when individuals perform an action and when they observe the same action performed by a conspecific. Mirror neurons are believed to be important for social learning, but it is not known whether mirror-like neurons occur in similar networks in other social species, such as rodents, or if they can be measured in such models using paradigms where observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching and wheel-running tasks, and found that cell populations in both areas robustly encoded several naturalistic behaviours. However, neural responses to the same set of observed actions were absent, although we verified that observer mice were attentive to performers and that PPC neurons responded reliably to visual cues. Statistical modelling also indicated that executed actions outperformed observed actions in predicting neural responses. These results raise the possibility that sensorimotor action recognition in rodents could take place outside of the parieto-frontal circuit, and underscore that detecting socially-driven neural coding depends critically on the species and behavioural paradigm used.","lang":"eng"}],"article_number":"5559"},{"abstract":[{"text":"Assemblies of colloidal semiconductor nanocrystals (NCs) in the form of thin solid films leverage the size-dependent quantum confinement properties and the wet chemical methods vital for the development of the emerging solution-processable electronics, photonics, and optoelectronics technologies. The ability to control the charge carrier transport in the colloidal NC assemblies is fundamental for altering their electronic and optical properties for the desired applications. Here we demonstrate a strategy to render the solids of narrow-bandgap NC assemblies exclusively electron-transporting by creating a type-II heterojunction via shelling. Electronic transport of molecularly cross-linked PbTe@PbS core@shell NC assemblies is measured using both a conventional solid gate transistor and an electric-double-layer transistor, as well as compared with those of core-only PbTe NCs. In contrast to the ambipolar characteristics demonstrated by many narrow-bandgap NCs, the core@shell NCs exhibit exclusive n-type transport, i.e., drastically suppressed contribution of holes to the overall transport. The PbS shell that forms a type-II heterojunction assists the selective carrier transport by heavy doping of electrons into the PbTe-core conduction level and simultaneously strongly localizes the holes within the NC core valence level. This strongly enhanced n-type transport makes these core@shell NCs suitable for applications where ambipolar characteristics should be actively suppressed, in particular, for thermoelectric and electron-transporting layers in photovoltaic devices.","lang":"eng"}],"publication_status":"published","date_created":"2020-04-05T22:00:48Z","volume":14,"intvolume":" 14","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","pmid":1,"isi":1,"day":"24","scopus_import":"1","citation":{"mla":"Miranti, Retno, et al. “Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal Assemblies.” ACS Nano, vol. 14, no. 3, American Chemical Society, 2020, pp. 3242–50, doi:10.1021/acsnano.9b08687.","chicago":"Miranti, Retno, Daiki Shin, Ricky Dwi Septianto, Maria Ibáñez, Maksym V. Kovalenko, Nobuhiro Matsushita, Yoshihiro Iwasa, and Satria Zulkarnaen Bisri. “Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal Assemblies.” ACS Nano. American Chemical Society, 2020. https://doi.org/10.1021/acsnano.9b08687.","ieee":"R. Miranti et al., “Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies,” ACS Nano, vol. 14, no. 3. American Chemical Society, pp. 3242–3250, 2020.","apa":"Miranti, R., Shin, D., Septianto, R. D., Ibáñez, M., Kovalenko, M. V., Matsushita, N., … Bisri, S. Z. (2020). Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.9b08687","short":"R. Miranti, D. Shin, R.D. Septianto, M. Ibáñez, M.V. Kovalenko, N. Matsushita, Y. Iwasa, S.Z. Bisri, ACS Nano 14 (2020) 3242–3250.","ama":"Miranti R, Shin D, Septianto RD, et al. Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies. ACS Nano. 2020;14(3):3242-3250. doi:10.1021/acsnano.9b08687","ista":"Miranti R, Shin D, Septianto RD, Ibáñez M, Kovalenko MV, Matsushita N, Iwasa Y, Bisri SZ. 2020. Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies. ACS Nano. 14(3), 3242–3250."},"department":[{"_id":"MaIb"}],"publication":"ACS Nano","publication_identifier":{"eissn":["1936-086X"]},"article_processing_charge":"No","month":"03","_id":"7634","date_published":"2020-03-24T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"page":"3242-3250","issue":"3","external_id":{"pmid":["32073817"],"isi":["000526301400057"]},"date_updated":"2023-08-18T10:25:40Z","article_type":"original","author":[{"full_name":"Miranti, Retno","first_name":"Retno","last_name":"Miranti"},{"full_name":"Shin, Daiki","last_name":"Shin","first_name":"Daiki"},{"first_name":"Ricky Dwi","last_name":"Septianto","full_name":"Septianto, Ricky Dwi"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843"},{"first_name":"Maksym V.","last_name":"Kovalenko","full_name":"Kovalenko, Maksym V."},{"full_name":"Matsushita, Nobuhiro","last_name":"Matsushita","first_name":"Nobuhiro"},{"first_name":"Yoshihiro","last_name":"Iwasa","full_name":"Iwasa, Yoshihiro"},{"last_name":"Bisri","first_name":"Satria Zulkarnaen","full_name":"Bisri, Satria Zulkarnaen"}],"type":"journal_article","oa_version":"None","publisher":"American Chemical Society","doi":"10.1021/acsnano.9b08687","title":"Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies","status":"public","year":"2020","acknowledgement":"This work is partly supported by Grants-in-Aid for Scientific Research by Young Scientist A (KAKENHI Wakate-A) No. JP17H04802, Grants-in-Aid for Scientific Research No. JP19H05602 from the Japan Society for the Promotion of Science, and RIKEN Incentive Research Grant (Shoreikadai) 2016. M.V.K. and M.I. acknowledge financial support from the European Union (EU) via FP7 ERC Starting Grant 2012 (Project NANOSOLID, GA No. 306733) and ETH Zurich via ETH career seed grant (SEED-18 16-2). Support from Cambridge Display Technology, Ltd., and Sumitomo Chemical Company is also acknowledged. We thank Mrs. T. Kikitsu and Dr. D. Hashizume (RIKEN-CEMS) for access to the transmission electron microscope facility."},{"article_processing_charge":"No","month":"02","abstract":[{"text":"Concurrent programming can be notoriously complex and error-prone. Programming bugs can arise from a variety of sources, such as operation re-reordering, or incomplete understanding of the memory model. A variety of formal and model checking methods have been developed to address this fundamental difficulty. While technically interesting, existing academic methods are still hard to apply to the large codebases typical of industrial deployments, which limits their practical impact.","lang":"eng"}],"publication_status":"published","_id":"7635","publication_identifier":{"isbn":["9781450368186"]},"page":"423-424","date_updated":"2024-02-28T12:53:46Z","quality_controlled":"1","date_published":"2020-02-19T00:00:00Z","date_created":"2020-04-05T22:00:48Z","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"name":"PPOPP: Principles and Practice of Parallel Programming","end_date":"2020-02-26","start_date":"2020-02-22","location":"San Diego, CA, United States"},"type":"conference","scopus_import":"1","day":"19","author":[{"id":"2F4DB10C-F248-11E8-B48F-1D18A9856A87","first_name":"Nikita","last_name":"Koval","full_name":"Koval, Nikita"},{"first_name":"Mariia","last_name":"Sokolova","full_name":"Sokolova, Mariia","id":"26217AE4-77FF-11EA-8101-AD24D49E41F4"},{"full_name":"Fedorov, Alexander","first_name":"Alexander","last_name":"Fedorov"},{"id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","last_name":"Alistarh","first_name":"Dan-Adrian","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X"},{"first_name":"Dmitry","last_name":"Tsitelov","full_name":"Tsitelov, Dmitry"}],"publisher":"Association for Computing Machinery","citation":{"ama":"Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency on the JVM with Lincheck. In: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP. Association for Computing Machinery; 2020:423-424. doi:10.1145/3332466.3374503","ista":"Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP. PPOPP: Principles and Practice of Parallel Programming, 423–424.","short":"N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP, Association for Computing Machinery, 2020, pp. 423–424.","chicago":"Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh, and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP, 423–24. Association for Computing Machinery, 2020. https://doi.org/10.1145/3332466.3374503.","mla":"Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP, Association for Computing Machinery, 2020, pp. 423–24, doi:10.1145/3332466.3374503.","apa":"Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., & Tsitelov, D. (2020). Testing concurrency on the JVM with Lincheck. In Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP (pp. 423–424). San Diego, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3332466.3374503","ieee":"N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing concurrency on the JVM with Lincheck,” in Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP, San Diego, CA, United States, 2020, pp. 423–424."},"doi":"10.1145/3332466.3374503","department":[{"_id":"DaAl"}],"year":"2020","title":"Testing concurrency on the JVM with Lincheck","publication":"Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP","status":"public","oa_version":"None"},{"date_created":"2020-04-05T22:00:49Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"_id":"268A44D6-B435-11E9-9278-68D0E5697425","name":"Elastic Coordination for Scalable Machine Learning","grant_number":"805223","call_identifier":"H2020"}],"abstract":[{"lang":"eng","text":"Balanced search trees typically use key comparisons to guide their operations, and achieve logarithmic running time. By relying on numerical properties of the keys, interpolation search achieves lower search complexity and better performance. Although interpolation-based data structures were investigated in the past, their non-blocking concurrent variants have received very little attention so far.\r\nIn this paper, we propose the first non-blocking implementation of the classic interpolation search tree (IST) data structure. For arbitrary key distributions, the data structure ensures worst-case O(log n + p) amortized time for search, insertion and deletion traversals. When the input key distributions are smooth, lookups run in expected O(log log n + p) time, and insertion and deletion run in expected amortized O(log log n + p) time, where p is a bound on the number of threads. To improve the scalability of concurrent insertion and deletion, we propose a novel parallel rebuilding technique, which should be of independent interest.\r\nWe evaluate whether the theoretical improvements translate to practice by implementing the concurrent interpolation search tree, and benchmarking it on uniform and nonuniform key distributions, for dataset sizes in the millions to billions of keys. Relative to the state-of-the-art concurrent data structures, the concurrent interpolation search tree achieves performance improvements of up to 15% under high update rates, and of up to 50% under moderate update rates. Further, ISTs exhibit up to 2X less cache-misses, and consume 1.2 -- 2.6X less memory compared to the next best alternative on typical dataset sizes. We find that the results are surprisingly robust to distributional skew, which suggests that our data structure can be a promising alternative to classic concurrent search structures."}],"publication_status":"published","oa":1,"ec_funded":1,"citation":{"ieee":"T. A. Brown, A. Prokopec, and D.-A. Alistarh, “Non-blocking interpolation search trees with doubly-logarithmic running time,” in Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, San Diego, CA, United States, 2020, pp. 276–291.","apa":"Brown, T. A., Prokopec, A., & Alistarh, D.-A. (2020). Non-blocking interpolation search trees with doubly-logarithmic running time. In Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (pp. 276–291). San Diego, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3332466.3374542","mla":"Brown, Trevor A., et al. “Non-Blocking Interpolation Search Trees with Doubly-Logarithmic Running Time.” Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2020, pp. 276–91, doi:10.1145/3332466.3374542.","chicago":"Brown, Trevor A, Aleksandar Prokopec, and Dan-Adrian Alistarh. “Non-Blocking Interpolation Search Trees with Doubly-Logarithmic Running Time.” In Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 276–91. Association for Computing Machinery, 2020. https://doi.org/10.1145/3332466.3374542.","short":"T.A. Brown, A. Prokopec, D.-A. Alistarh, in:, Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2020, pp. 276–291.","ista":"Brown TA, Prokopec A, Alistarh D-A. 2020. Non-blocking interpolation search trees with doubly-logarithmic running time. Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming. PPOPP: Principles and Practice of Parallel Programming, 276–291.","ama":"Brown TA, Prokopec A, Alistarh D-A. Non-blocking interpolation search trees with doubly-logarithmic running time. In: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming. Association for Computing Machinery; 2020:276-291. doi:10.1145/3332466.3374542"},"department":[{"_id":"DaAl"}],"publication":"Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming","isi":1,"day":"19","scopus_import":"1","date_published":"2020-02-19T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"page":"276-291","external_id":{"isi":["000564476500020"]},"date_updated":"2024-02-28T12:55:14Z","publication_identifier":{"isbn":["9781450368186"]},"article_processing_charge":"No","month":"02","_id":"7636","oa_version":"Published Version","publisher":"Association for Computing Machinery","doi":"10.1145/3332466.3374542","title":"Non-blocking interpolation search trees with doubly-logarithmic running time","status":"public","year":"2020","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union Horizon 2020 research and innovation program, grant agreement No 805223, ERC Starting Grant ScaleML. We acknowledge the support of the Natural Sciences and\r\nEngineering Research Council of Canada (NSERC). ","author":[{"id":"3569F0A0-F248-11E8-B48F-1D18A9856A87","first_name":"Trevor A","last_name":"Brown","full_name":"Brown, Trevor A"},{"first_name":"Aleksandar","last_name":"Prokopec","full_name":"Prokopec, Aleksandar"},{"first_name":"Dan-Adrian","last_name":"Alistarh","full_name":"Alistarh, Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3650-940X"}],"main_file_link":[{"url":"https://doi.org/10.1145/3332466.3374542","open_access":"1"}],"conference":{"location":"San Diego, CA, United States","start_date":"2020-02-22","end_date":"2020-02-26","name":"PPOPP: Principles and Practice of Parallel Programming"},"type":"conference"},{"oa_version":"Preprint","year":"2020","status":"public","title":"From weakly interacting particles to a regularised Dean-Kawasaki model","publisher":"IOP Publishing","doi":"10.1088/1361-6544/ab5174","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1811.06448"}],"author":[{"orcid":"0000-0002-6269-5149","last_name":"Cornalba","first_name":"Federico","full_name":"Cornalba, Federico","id":"2CEB641C-A400-11E9-A717-D712E6697425"},{"last_name":"Shardlow","first_name":"Tony","full_name":"Shardlow, Tony"},{"full_name":"Zimmer, Johannes","last_name":"Zimmer","first_name":"Johannes"}],"type":"journal_article","language":[{"iso":"eng"}],"date_published":"2020-01-10T00:00:00Z","quality_controlled":"1","external_id":{"arxiv":["1811.06448"],"isi":["000508175400001"]},"date_updated":"2023-08-18T10:26:07Z","article_type":"original","page":"864-891","issue":"2","publication_identifier":{"issn":["09517715"],"eissn":["13616544"]},"_id":"7637","article_processing_charge":"No","month":"01","oa":1,"publication":"Nonlinearity","department":[{"_id":"JuFi"}],"citation":{"chicago":"Cornalba, Federico, Tony Shardlow, and Johannes Zimmer. “From Weakly Interacting Particles to a Regularised Dean-Kawasaki Model.” Nonlinearity. IOP Publishing, 2020. https://doi.org/10.1088/1361-6544/ab5174.","mla":"Cornalba, Federico, et al. “From Weakly Interacting Particles to a Regularised Dean-Kawasaki Model.” Nonlinearity, vol. 33, no. 2, IOP Publishing, 2020, pp. 864–91, doi:10.1088/1361-6544/ab5174.","apa":"Cornalba, F., Shardlow, T., & Zimmer, J. (2020). From weakly interacting particles to a regularised Dean-Kawasaki model. Nonlinearity. IOP Publishing. https://doi.org/10.1088/1361-6544/ab5174","ieee":"F. Cornalba, T. Shardlow, and J. Zimmer, “From weakly interacting particles to a regularised Dean-Kawasaki model,” Nonlinearity, vol. 33, no. 2. IOP Publishing, pp. 864–891, 2020.","ama":"Cornalba F, Shardlow T, Zimmer J. From weakly interacting particles to a regularised Dean-Kawasaki model. Nonlinearity. 2020;33(2):864-891. doi:10.1088/1361-6544/ab5174","ista":"Cornalba F, Shardlow T, Zimmer J. 2020. From weakly interacting particles to a regularised Dean-Kawasaki model. Nonlinearity. 33(2), 864–891.","short":"F. Cornalba, T. Shardlow, J. Zimmer, Nonlinearity 33 (2020) 864–891."},"day":"10","scopus_import":"1","isi":1,"volume":33,"intvolume":" 33","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2020-04-05T22:00:49Z","arxiv":1,"publication_status":"published","abstract":[{"lang":"eng","text":"The evolution of finitely many particles obeying Langevin dynamics is described by Dean–Kawasaki equations, a class of stochastic equations featuring a non-Lipschitz multiplicative noise in divergence form. We derive a regularised Dean–Kawasaki model based on second order Langevin dynamics by analysing a system of particles interacting via a pairwise potential. Key tools of our analysis are the propagation of chaos and Simon's compactness criterion. The model we obtain is a small-noise stochastic perturbation of the undamped McKean–Vlasov equation. We also provide a high-probability result for existence and uniqueness for our model."}]},{"_id":"7638","month":"01","article_processing_charge":"No","publication_identifier":{"eissn":["17425468"]},"article_type":"original","date_updated":"2023-08-18T10:27:15Z","external_id":{"arxiv":["1909.13142"],"isi":["000520187500001"]},"issue":"1","file":[{"access_level":"open_access","relation":"main_file","checksum":"4030e683c15d30b7b4794ec7dc1b6537","file_name":"2020_JournStatisticalMech_DeNicola.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:48:01Z","file_size":3159026,"creator":"dernst","file_id":"7648","date_created":"2020-04-06T13:15:49Z"}],"language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2020-01-22T00:00:00Z","type":"journal_article","file_date_updated":"2020-07-14T12:48:01Z","author":[{"id":"42832B76-F248-11E8-B48F-1D18A9856A87","last_name":"De Nicola","first_name":"Stefano","full_name":"De Nicola, Stefano","orcid":"0000-0002-4842-6671"},{"last_name":"Doyon","first_name":"B.","full_name":"Doyon, B."},{"full_name":"Bhaseen, M. J.","first_name":"M. J.","last_name":"Bhaseen"}],"status":"public","title":"Non-equilibrium quantum spin dynamics from classical stochastic processes","year":"2020","doi":"10.1088/1742-5468/ab6093","publisher":"IOP Publishing","ddc":["530"],"has_accepted_license":"1","oa_version":"Published Version","abstract":[{"text":"Following on from our recent work, we investigate a stochastic approach to non-equilibrium quantum spin systems. We show how the method can be applied to a variety of physical observables and for different initial conditions. We provide exact formulae of broad applicability for the time-dependence of expectation values and correlation functions following a quantum quench in terms of averages over classical stochastic processes. We further explore the behavior of the classical stochastic variables in the presence of dynamical quantum phase transitions, including results for their distributions and correlation functions. We provide details on the numerical solution of the associated stochastic differential equations, and examine the growth of fluctuations in the classical description. We discuss the strengths and limitations of the current implementation of the stochastic approach and the potential for further development.","lang":"eng"}],"publication_status":"published","project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"arxiv":1,"article_number":"013106","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":2020,"intvolume":" 2020","date_created":"2020-04-05T22:00:50Z","day":"22","scopus_import":"1","isi":1,"publication":"Journal of Statistical Mechanics: Theory and Experiment","department":[{"_id":"MaSe"}],"citation":{"short":"S. De Nicola, B. Doyon, M.J. Bhaseen, Journal of Statistical Mechanics: Theory and Experiment 2020 (2020).","ista":"De Nicola S, Doyon B, Bhaseen MJ. 2020. Non-equilibrium quantum spin dynamics from classical stochastic processes. Journal of Statistical Mechanics: Theory and Experiment. 2020(1), 013106.","ama":"De Nicola S, Doyon B, Bhaseen MJ. Non-equilibrium quantum spin dynamics from classical stochastic processes. Journal of Statistical Mechanics: Theory and Experiment. 2020;2020(1). doi:10.1088/1742-5468/ab6093","ieee":"S. De Nicola, B. Doyon, and M. J. Bhaseen, “Non-equilibrium quantum spin dynamics from classical stochastic processes,” Journal of Statistical Mechanics: Theory and Experiment, vol. 2020, no. 1. IOP Publishing, 2020.","apa":"De Nicola, S., Doyon, B., & Bhaseen, M. J. (2020). Non-equilibrium quantum spin dynamics from classical stochastic processes. Journal of Statistical Mechanics: Theory and Experiment. IOP Publishing. https://doi.org/10.1088/1742-5468/ab6093","mla":"De Nicola, Stefano, et al. “Non-Equilibrium Quantum Spin Dynamics from Classical Stochastic Processes.” Journal of Statistical Mechanics: Theory and Experiment, vol. 2020, no. 1, 013106, IOP Publishing, 2020, doi:10.1088/1742-5468/ab6093.","chicago":"De Nicola, Stefano, B. Doyon, and M. J. Bhaseen. “Non-Equilibrium Quantum Spin Dynamics from Classical Stochastic Processes.” Journal of Statistical Mechanics: Theory and Experiment. IOP Publishing, 2020. https://doi.org/10.1088/1742-5468/ab6093."},"oa":1,"ec_funded":1},{"page":"37-40","issue":"5","article_type":"letter_note","date_updated":"2023-09-07T13:13:04Z","external_id":{"pmid":["32107280"],"isi":["000536641800018"]},"quality_controlled":"1","date_published":"2020-05-08T00:00:00Z","language":[{"iso":"eng"}],"month":"05","article_processing_charge":"No","_id":"7643","publication_identifier":{"eissn":["1532-2548"],"issn":["0032-0889"]},"doi":"10.1104/pp.20.00212","publisher":"American Society of Plant Biologists","acknowledgement":"This work was supported by the European Research Council under the European Union’s Horizon 2020 research and innovation Programme (ERC grant agreement number 742985), and the Austrian Science Fund (FWF, grant number I 3630-B25) to JF. HH is supported by the China Scholarship Council (CSC scholarship). ","year":"2020","status":"public","title":"SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism","oa_version":"Published Version","type":"journal_article","author":[{"id":"31435098-F248-11E8-B48F-1D18A9856A87","first_name":"Huibin","last_name":"Han","full_name":"Han, Huibin"},{"id":"4CAAA450-78D2-11EA-8E57-B40A396E08BA","first_name":"Hana","last_name":"Rakusova","full_name":"Rakusova, Hana"},{"orcid":"0000-0001-7241-2328","id":"362BF7FE-F248-11E8-B48F-1D18A9856A87","first_name":"Inge","last_name":"Verstraeten","full_name":"Verstraeten, Inge"},{"first_name":"Yuzhou","last_name":"Zhang","full_name":"Zhang, Yuzhou","id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2627-6956"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","first_name":"Jiří","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596"}],"main_file_link":[{"url":"https://doi.org/10.1104/pp.20.00212","open_access":"1"}],"pmid":1,"date_created":"2020-04-06T10:06:40Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":183,"intvolume":" 183","publication_status":"published","project":[{"call_identifier":"H2020","name":"Tracing Evolution of Auxin Transport and Polarity in Plants","grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","name":"Molecular mechanisms of endocytic cargo recognition in plants","_id":"26538374-B435-11E9-9278-68D0E5697425","grant_number":"I03630"}],"citation":{"ista":"Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. 2020. SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism. Plant Physiology. 183(5), 37–40.","ama":"Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism. Plant Physiology. 2020;183(5):37-40. doi:10.1104/pp.20.00212","short":"H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, J. Friml, Plant Physiology 183 (2020) 37–40.","ieee":"H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, and J. Friml, “SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism,” Plant Physiology, vol. 183, no. 5. American Society of Plant Biologists, pp. 37–40, 2020.","apa":"Han, H., Rakusova, H., Verstraeten, I., Zhang, Y., & Friml, J. (2020). SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism. Plant Physiology. American Society of Plant Biologists. https://doi.org/10.1104/pp.20.00212","chicago":"Han, Huibin, Hana Rakusova, Inge Verstraeten, Yuzhou Zhang, and Jiří Friml. “SCF TIR1/AFB Auxin Signaling for Bending Termination during Shoot Gravitropism.” Plant Physiology. American Society of Plant Biologists, 2020. https://doi.org/10.1104/pp.20.00212.","mla":"Han, Huibin, et al. “SCF TIR1/AFB Auxin Signaling for Bending Termination during Shoot Gravitropism.” Plant Physiology, vol. 183, no. 5, American Society of Plant Biologists, 2020, pp. 37–40, doi:10.1104/pp.20.00212."},"department":[{"_id":"JiFr"}],"publication":"Plant Physiology","ec_funded":1,"oa":1,"isi":1,"scopus_import":"1","day":"08","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"8589"}]}},{"author":[{"full_name":"Lee, E","first_name":"E","last_name":"Lee"},{"first_name":"B","last_name":"Vila Nova Santana","full_name":"Vila Nova Santana, B"},{"first_name":"E","last_name":"Samuels","full_name":"Samuels, E"},{"last_name":"Benitez-Fuente","first_name":"F","full_name":"Benitez-Fuente, F"},{"full_name":"Corsi, E","first_name":"E","last_name":"Corsi"},{"last_name":"Botella","first_name":"MA","full_name":"Botella, MA"},{"full_name":"Perez-Sancho, J","last_name":"Perez-Sancho","first_name":"J"},{"full_name":"Vanneste, S","first_name":"S","last_name":"Vanneste"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","first_name":"Jiří","last_name":"Friml","orcid":"0000-0002-8302-7596"},{"full_name":"Macho, A","first_name":"A","last_name":"Macho"},{"full_name":"Alves Azevedo, A","last_name":"Alves Azevedo","first_name":"A"},{"full_name":"Rosado, A","last_name":"Rosado","first_name":"A"}],"file_date_updated":"2020-10-06T07:41:35Z","type":"journal_article","has_accepted_license":"1","oa_version":"Published Version","ddc":["580"],"publisher":"Oxford University Press","doi":"10.1093/jxb/eraa138","title":"Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis","status":"public","year":"2020","publication_identifier":{"eissn":["1460-2431"],"issn":["0022-0957"]},"article_processing_charge":"No","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"07","_id":"7646","date_published":"2020-07-06T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"file":[{"file_size":1916031,"date_updated":"2020-10-06T07:41:35Z","date_created":"2020-10-06T07:41:35Z","creator":"dernst","file_id":"8613","success":1,"file_name":"2020_JourExperimBotany_Lee.pdf","access_level":"open_access","checksum":"b06aaaa93dc41896da805fe4b75cf3a1","relation":"main_file","content_type":"application/pdf"}],"issue":"14","page":"3986–3998","external_id":{"pmid":["32179893"],"isi":["000553125400007"]},"date_updated":"2023-08-18T10:27:52Z","article_type":"original","isi":1,"day":"06","oa":1,"department":[{"_id":"JiFr"}],"citation":{"ieee":"E. Lee et al., “Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,” Journal of Experimental Botany, vol. 71, no. 14. Oxford University Press, pp. 3986–3998, 2020.","apa":"Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E., Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental Botany. Oxford University Press. https://doi.org/10.1093/jxb/eraa138","chicago":"Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella, J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” Journal of Experimental Botany. Oxford University Press, 2020. https://doi.org/10.1093/jxb/eraa138.","mla":"Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” Journal of Experimental Botany, vol. 71, no. 14, Oxford University Press, 2020, pp. 3986–3998, doi:10.1093/jxb/eraa138.","ista":"Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental Botany. 71(14), 3986–3998.","ama":"Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental Botany. 2020;71(14):3986–3998. doi:10.1093/jxb/eraa138","short":"E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M. Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A. Rosado, Journal of Experimental Botany 71 (2020) 3986–3998."},"publication":"Journal of Experimental Botany","abstract":[{"text":"In plant cells, environmental stressors promote changes in connectivity between the cortical ER and the PM. Although this process is tightly regulated in space and time, the molecular signals and structural components mediating these changes in inter-organelle communication are only starting to be characterized. In this report, we confirm the presence of a putative tethering complex containing the synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein 1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+) rare earth elements (REEs). Although REEs are generally used as non-selective cation channel blockers at the PM, here we show that the slow internalization of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes. We propose that the observed EPCS rearrangements act as a slow adaptive response to sustained stress conditions, and that this process involves the accumulation of stress-specific phosphoinositides species at the PM.","lang":"eng"}],"publication_status":"published","date_created":"2020-04-06T10:57:08Z","intvolume":" 71","volume":71,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","pmid":1},{"project":[{"call_identifier":"H2020","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","grant_number":"694227"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"arxiv":1,"publication_status":"published","abstract":[{"lang":"eng","text":"We consider a dilute, homogeneous Bose gas at positive temperature. The system is investigated in the Gross–Pitaevskii limit, where the scattering length a is so small that the interaction energy is of the same order of magnitude as the spectral gap of the Laplacian, and for temperatures that are comparable to the critical temperature of the ideal gas. We show that the difference between the specific free energy of the interacting system and the one of the ideal gas is to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show that the one-particle density matrix of any approximate minimizer of the Gibbs free energy functional is to leading order given by the one of the ideal gas. This in particular proves Bose–Einstein condensation with critical temperature given by the one of the ideal gas to leading order. One key ingredient of our proof is a novel use of the Gibbs variational principle that goes hand in hand with the c-number substitution."}],"volume":236,"intvolume":" 236","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_created":"2020-04-08T15:18:03Z","scopus_import":"1","day":"09","isi":1,"ec_funded":1,"oa":1,"publication":"Archive for Rational Mechanics and Analysis","department":[{"_id":"RoSe"}],"citation":{"chicago":"Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous Bose Gas at Positive Temperature.” Archive for Rational Mechanics and Analysis. Springer Nature, 2020. https://doi.org/10.1007/s00205-020-01489-4.","mla":"Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous Bose Gas at Positive Temperature.” Archive for Rational Mechanics and Analysis, vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:10.1007/s00205-020-01489-4.","apa":"Deuchert, A., & Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. Archive for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-020-01489-4","ieee":"A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature,” Archive for Rational Mechanics and Analysis, vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.","ista":"Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6), 1217–1271.","ama":"Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. Archive for Rational Mechanics and Analysis. 2020;236(6):1217-1271. doi:10.1007/s00205-020-01489-4","short":"A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236 (2020) 1217–1271."},"publication_identifier":{"issn":["0003-9527"],"eissn":["1432-0673"]},"_id":"7650","article_processing_charge":"Yes (via OA deal)","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"03","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2020-03-09T00:00:00Z","date_updated":"2023-09-05T14:18:49Z","external_id":{"arxiv":["1901.11363"],"isi":["000519415000001"]},"article_type":"original","file":[{"content_type":"application/pdf","relation":"main_file","checksum":"b645fb64bfe95bbc05b3eea374109a9c","access_level":"open_access","file_name":"2020_ArchRatMechanicsAnalysis_Deuchert.pdf","success":1,"creator":"dernst","file_id":"8785","date_created":"2020-11-20T13:17:42Z","date_updated":"2020-11-20T13:17:42Z","file_size":704633}],"issue":"6","page":"1217-1271","file_date_updated":"2020-11-20T13:17:42Z","author":[{"last_name":"Deuchert","first_name":"Andreas","full_name":"Deuchert, Andreas","id":"4DA65CD0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3146-6746"},{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Seiringer, Robert","first_name":"Robert","last_name":"Seiringer"}],"type":"journal_article","has_accepted_license":"1","oa_version":"Published Version","year":"2020","status":"public","title":"Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions. Financial support by the European Research Council (ERC) under the European Union’sHorizon 2020 research and innovation programme (Grant Agreement No. 694227) is gratefully acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 836146.","ddc":["510"],"publisher":"Springer Nature","doi":"10.1007/s00205-020-01489-4"},{"oa_version":"Published Version","has_accepted_license":"1","doi":"10.1098/rsif.2019.0721","ddc":["570"],"publisher":"The Royal Society","title":"A developmentally descriptive method for quantifying shape in gastropod shells","year":"2020","status":"public","author":[{"full_name":"Larsson, J.","first_name":"J.","last_name":"Larsson"},{"orcid":"0000-0003-1050-4969","id":"3C147470-F248-11E8-B48F-1D18A9856A87","full_name":"Westram, Anja M","last_name":"Westram","first_name":"Anja M"},{"full_name":"Bengmark, S.","last_name":"Bengmark","first_name":"S."},{"full_name":"Lundh, T.","first_name":"T.","last_name":"Lundh"},{"full_name":"Butlin, R. K.","first_name":"R. K.","last_name":"Butlin"}],"file_date_updated":"2020-07-14T12:48:01Z","type":"journal_article","date_published":"2020-02-01T00:00:00Z","quality_controlled":"1","language":[{"iso":"eng"}],"issue":"163","file":[{"file_size":1556190,"date_updated":"2020-07-14T12:48:01Z","date_created":"2020-04-14T12:31:16Z","file_id":"7660","creator":"dernst","file_name":"2020_JournRoyalSociety_Larsson.pdf","access_level":"open_access","checksum":"4eb102304402f5c56432516b84df86d6","relation":"main_file","content_type":"application/pdf"}],"article_type":"original","date_updated":"2021-01-12T08:14:41Z","publication_identifier":{"issn":["1742-5689"],"eissn":["1742-5662"]},"month":"02","article_processing_charge":"No","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"7651","oa":1,"citation":{"ista":"Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. 2020. A developmentally descriptive method for quantifying shape in gastropod shells. Journal of The Royal Society Interface. 17(163), 20190721.","ama":"Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. A developmentally descriptive method for quantifying shape in gastropod shells. Journal of The Royal Society Interface. 2020;17(163). doi:10.1098/rsif.2019.0721","short":"J. Larsson, A.M. Westram, S. Bengmark, T. Lundh, R.K. Butlin, Journal of The Royal Society Interface 17 (2020).","chicago":"Larsson, J., Anja M Westram, S. Bengmark, T. Lundh, and R. K. Butlin. “A Developmentally Descriptive Method for Quantifying Shape in Gastropod Shells.” Journal of The Royal Society Interface. The Royal Society, 2020. https://doi.org/10.1098/rsif.2019.0721.","mla":"Larsson, J., et al. “A Developmentally Descriptive Method for Quantifying Shape in Gastropod Shells.” Journal of The Royal Society Interface, vol. 17, no. 163, 20190721, The Royal Society, 2020, doi:10.1098/rsif.2019.0721.","apa":"Larsson, J., Westram, A. M., Bengmark, S., Lundh, T., & Butlin, R. K. (2020). A developmentally descriptive method for quantifying shape in gastropod shells. Journal of The Royal Society Interface. The Royal Society. https://doi.org/10.1098/rsif.2019.0721","ieee":"J. Larsson, A. M. Westram, S. Bengmark, T. Lundh, and R. K. Butlin, “A developmentally descriptive method for quantifying shape in gastropod shells,” Journal of The Royal Society Interface, vol. 17, no. 163. The Royal Society, 2020."},"department":[{"_id":"NiBa"}],"publication":"Journal of The Royal Society Interface","scopus_import":1,"day":"01","date_created":"2020-04-08T15:19:17Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":17,"intvolume":" 17","article_number":"20190721","publication_status":"published","abstract":[{"lang":"eng","text":"The growth of snail shells can be described by simple mathematical rules. Variation in a few parameters can explain much of the diversity of shell shapes seen in nature. However, empirical studies of gastropod shell shape variation typically use geometric morphometric approaches, which do not capture this growth pattern. We have developed a way to infer a set of developmentally descriptive shape parameters based on three-dimensional logarithmic helicospiral growth and using landmarks from two-dimensional shell images as input. We demonstrate the utility of this approach, and compare it to the geometric morphometric approach, using a large set of Littorina saxatilis shells in which locally adapted populations differ in shape. Our method can be modified easily to make it applicable to a wide range of shell forms, which would allow for investigations of the similarities and differences between and within many different species of gastropods."}]},{"abstract":[{"text":"Organisms cope with change by taking advantage of transcriptional regulators. However, when faced with rare environments, the evolution of transcriptional regulators and their promoters may be too slow. Here, we investigate whether the intrinsic instability of gene duplication and amplification provides a generic alternative to canonical gene regulation. Using real-time monitoring of gene-copy-number mutations in Escherichia coli, we show that gene duplications and amplifications enable adaptation to fluctuating environments by rapidly generating copy-number and, therefore, expression-level polymorphisms. This amplification-mediated gene expression tuning (AMGET) occurs on timescales that are similar to canonical gene regulation and can respond to rapid environmental changes. Mathematical modelling shows that amplifications also tune gene expression in stochastic environments in which transcription-factor-based schemes are hard to evolve or maintain. The fleeting nature of gene amplifications gives rise to a generic population-level mechanism that relies on genetic heterogeneity to rapidly tune the expression of any gene, without leaving any genomic signature.","lang":"eng"}],"publication_status":"published","project":[{"name":"Biophysically realistic genotype-phenotype maps for regulatory networks","_id":"267C84F4-B435-11E9-9278-68D0E5697425"}],"intvolume":" 4","volume":4,"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2020-04-08T15:20:53Z","scopus_import":"1","day":"01","isi":1,"related_material":{"link":[{"description":"News on IST Homepage","url":"https://ist.ac.at/en/news/how-to-thrive-without-gene-regulation/","relation":"press_release"}],"record":[{"id":"8155","status":"public","relation":"dissertation_contains"},{"id":"7383","status":"public","relation":"research_data"},{"status":"public","relation":"research_data","id":"7016"},{"status":"public","relation":"used_in_publication","id":"8653"}]},"publication":"Nature Ecology & Evolution","citation":{"short":"I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.","ista":"Tomanek I, Grah R, Lagator M, Andersson AMC, Bollback JP, Tkačik G, Guet CC. 2020. Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. 4(4), 612–625.","ama":"Tomanek I, Grah R, Lagator M, et al. Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. 2020;4(4):612-625. doi:10.1038/s41559-020-1132-7","mla":"Tomanek, Isabella, et al. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Nature Ecology & Evolution, vol. 4, no. 4, Springer Nature, 2020, pp. 612–25, doi:10.1038/s41559-020-1132-7.","chicago":"Tomanek, Isabella, Rok Grah, M. Lagator, A. M. C. Andersson, Jonathan P Bollback, Gašper Tkačik, and Calin C Guet. “Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Nature Ecology & Evolution. Springer Nature, 2020. https://doi.org/10.1038/s41559-020-1132-7.","ieee":"I. Tomanek et al., “Gene amplification as a form of population-level gene expression regulation,” Nature Ecology & Evolution, vol. 4, no. 4. Springer Nature, pp. 612–625, 2020.","apa":"Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkačik, G., & Guet, C. C. (2020). Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. Springer Nature. https://doi.org/10.1038/s41559-020-1132-7"},"department":[{"_id":"GaTk"},{"_id":"CaGu"}],"oa":1,"_id":"7652","article_processing_charge":"No","month":"04","publication_identifier":{"issn":["2397-334X"]},"external_id":{"isi":["000519008300005"]},"date_updated":"2024-03-25T23:30:20Z","article_type":"original","file":[{"file_name":"2020_NatureEcolEvo_Tomanek.pdf","checksum":"ef3bbf42023e30b2c24a6278025d2040","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_size":745242,"date_updated":"2020-10-09T09:56:01Z","date_created":"2020-10-09T09:56:01Z","success":1,"creator":"dernst","file_id":"8640"}],"issue":"4","page":"612-625","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2020-04-01T00:00:00Z","type":"journal_article","file_date_updated":"2020-10-09T09:56:01Z","author":[{"id":"3981F020-F248-11E8-B48F-1D18A9856A87","first_name":"Isabella","last_name":"Tomanek","full_name":"Tomanek, Isabella","orcid":"0000-0001-6197-363X"},{"full_name":"Grah, Rok","first_name":"Rok","last_name":"Grah","id":"483E70DE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2539-3560"},{"full_name":"Lagator, M.","last_name":"Lagator","first_name":"M."},{"first_name":"A. M. C.","last_name":"Andersson","full_name":"Andersson, A. M. C."},{"id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","last_name":"Bollback","first_name":"Jonathan P","full_name":"Bollback, Jonathan P","orcid":"0000-0002-4624-4612"},{"orcid":"0000-0002-6699-1455","last_name":"Tkačik","first_name":"Gašper","full_name":"Tkačik, Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Guet, Calin C","last_name":"Guet","first_name":"Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6220-2052"}],"title":"Gene amplification as a form of population-level gene expression regulation","status":"public","year":"2020","acknowledgement":"We thank L. Hurst, N. Barton, M. Pleska, M. Steinrück, B. Kavcic and A. Staron for input on the manuscript, and To. Bergmiller and R. Chait for help with microfluidics experiments. I.T. is a recipient the OMV fellowship. R.G. is a recipient of a DOC (Doctoral Fellowship Programme of the Austrian Academy of Sciences) Fellowship of the Austrian Academy of Sciences.","publisher":"Springer Nature","ddc":["570"],"doi":"10.1038/s41559-020-1132-7","has_accepted_license":"1","oa_version":"Submitted Version"},{"article_number":"20","publication_status":"published","abstract":[{"text":"We propose that correlations among neurons are generically strong enough to organize neural activity patterns into a discrete set of clusters, which can each be viewed as a population codeword. Our reasoning starts with the analysis of retinal ganglion cell data using maximum entropy models, showing that the population is robustly in a frustrated, marginally sub-critical, or glassy, state. This leads to an argument that neural populations in many other brain areas might share this structure. Next, we use latent variable models to show that this glassy state possesses well-defined clusters of neural activity. Clusters have three appealing properties: (i) clusters exhibit error correction, i.e., they are reproducibly elicited by the same stimulus despite variability at the level of constituent neurons; (ii) clusters encode qualitatively different visual features than their constituent neurons; and (iii) clusters can be learned by downstream neural circuits in an unsupervised fashion. We hypothesize that these properties give rise to a “learnable” neural code which the cortical hierarchy uses to extract increasingly complex features without supervision or reinforcement.","lang":"eng"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":14,"intvolume":" 14","date_created":"2020-04-12T22:00:40Z","pmid":1,"scopus_import":"1","day":"13","isi":1,"oa":1,"publication":"Frontiers in Computational Neuroscience","department":[{"_id":"GaTk"}],"citation":{"chicago":"Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design Principle for Population Codes.” Frontiers in Computational Neuroscience. Frontiers, 2020. https://doi.org/10.3389/fncom.2020.00020.","mla":"Berry, Michael J., and Gašper Tkačik. “Clustering of Neural Activity: A Design Principle for Population Codes.” Frontiers in Computational Neuroscience, vol. 14, 20, Frontiers, 2020, doi:10.3389/fncom.2020.00020.","ieee":"M. J. Berry and G. Tkačik, “Clustering of neural activity: A design principle for population codes,” Frontiers in Computational Neuroscience, vol. 14. Frontiers, 2020.","apa":"Berry, M. J., & Tkačik, G. (2020). Clustering of neural activity: A design principle for population codes. Frontiers in Computational Neuroscience. Frontiers. https://doi.org/10.3389/fncom.2020.00020","ista":"Berry MJ, Tkačik G. 2020. Clustering of neural activity: A design principle for population codes. Frontiers in Computational Neuroscience. 14, 20.","ama":"Berry MJ, Tkačik G. Clustering of neural activity: A design principle for population codes. Frontiers in Computational Neuroscience. 2020;14. doi:10.3389/fncom.2020.00020","short":"M.J. Berry, G. Tkačik, Frontiers in Computational Neuroscience 14 (2020)."},"publication_identifier":{"eissn":["16625188"]},"_id":"7656","month":"03","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2020-03-13T00:00:00Z","article_type":"original","date_updated":"2023-08-18T10:30:11Z","external_id":{"pmid":["32231528"],"isi":["000525543200001"]},"file":[{"date_created":"2020-04-14T12:20:39Z","file_id":"7659","creator":"dernst","file_size":4082937,"date_updated":"2020-07-14T12:48:01Z","content_type":"application/pdf","file_name":"2020_Frontiers_Berry.pdf","checksum":"2b1da23823eae9cedbb42d701945b61e","relation":"main_file","access_level":"open_access"}],"file_date_updated":"2020-07-14T12:48:01Z","author":[{"first_name":"Michael J.","last_name":"Berry","full_name":"Berry, Michael J."},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik","first_name":"Gašper","full_name":"Tkačik, Gašper","orcid":"0000-0002-6699-1455"}],"type":"journal_article","has_accepted_license":"1","oa_version":"Published Version","status":"public","year":"2020","title":"Clustering of neural activity: A design principle for population codes","doi":"10.3389/fncom.2020.00020","publisher":"Frontiers","ddc":["570"]},{"day":"08","scopus_import":"1","isi":1,"publication":"Nano Letters","department":[{"_id":"MaLo"}],"citation":{"chicago":"Felhofer, Martin, Peter Bock, Adya Singh, Batirtze Prats Mateu, Ronald Zirbs, and Notburga Gierlinger. “Wood Deformation Leads to Rearrangement of Molecules at the Nanoscale.” Nano Letters. American Chemical Society, 2020. https://doi.org/10.1021/acs.nanolett.0c00205.","mla":"Felhofer, Martin, et al. “Wood Deformation Leads to Rearrangement of Molecules at the Nanoscale.” Nano Letters, vol. 20, no. 4, American Chemical Society, 2020, pp. 2647–53, doi:10.1021/acs.nanolett.0c00205.","apa":"Felhofer, M., Bock, P., Singh, A., Prats Mateu, B., Zirbs, R., & Gierlinger, N. (2020). Wood deformation leads to rearrangement of molecules at the nanoscale. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.0c00205","ieee":"M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, and N. Gierlinger, “Wood deformation leads to rearrangement of molecules at the nanoscale,” Nano Letters, vol. 20, no. 4. American Chemical Society, pp. 2647–2653, 2020.","ista":"Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. 2020. Wood deformation leads to rearrangement of molecules at the nanoscale. Nano Letters. 20(4), 2647–2653.","ama":"Felhofer M, Bock P, Singh A, Prats Mateu B, Zirbs R, Gierlinger N. Wood deformation leads to rearrangement of molecules at the nanoscale. Nano Letters. 2020;20(4):2647-2653. doi:10.1021/acs.nanolett.0c00205","short":"M. Felhofer, P. Bock, A. Singh, B. Prats Mateu, R. Zirbs, N. Gierlinger, Nano Letters 20 (2020) 2647–2653."},"oa":1,"publication_status":"published","abstract":[{"text":"Wood, as the most abundant carbon dioxide storing bioresource, is currently driven beyond its traditional use through creative innovations and nanotechnology. For many properties the micro- and nanostructure plays a crucial role and one key challenge is control and detection of chemical and physical processes in the confined microstructure and nanopores of the wooden cell wall. In this study, correlative Raman and atomic force microscopy show high potential for tracking in situ molecular rearrangement of wood polymers during compression. More water molecules (interpreted as wider cellulose microfibril distances) and disentangling of hemicellulose chains are detected in the opened cell wall regions, whereas an increase of lignin is revealed in the compressed areas. These results support a new more “loose” cell wall model based on flexible lignin nanodomains and advance our knowledge of the molecular reorganization during deformation of wood for optimized processing and utilization.","lang":"eng"}],"pmid":1,"volume":20,"intvolume":" 20","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","date_created":"2020-04-19T22:00:54Z","type":"journal_article","file_date_updated":"2020-07-14T12:48:01Z","author":[{"first_name":"Martin","last_name":"Felhofer","full_name":"Felhofer, Martin"},{"last_name":"Bock","first_name":"Peter","full_name":"Bock, Peter"},{"first_name":"Adya","last_name":"Singh","full_name":"Singh, Adya"},{"first_name":"Batirtze","last_name":"Prats Mateu","full_name":"Prats Mateu, Batirtze","id":"299FE892-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Zirbs, Ronald","last_name":"Zirbs","first_name":"Ronald"},{"first_name":"Notburga","last_name":"Gierlinger","full_name":"Gierlinger, Notburga"}],"year":"2020","status":"public","title":"Wood deformation leads to rearrangement of molecules at the nanoscale","publisher":"American Chemical Society","ddc":["530"],"doi":"10.1021/acs.nanolett.0c00205","has_accepted_license":"1","oa_version":"Published Version","_id":"7663","article_processing_charge":"No","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"month":"04","publication_identifier":{"eissn":["15306992"]},"external_id":{"pmid":["32196350"],"isi":["000526413400055"]},"date_updated":"2023-08-21T06:12:09Z","article_type":"original","file":[{"file_size":7108014,"date_updated":"2020-07-14T12:48:01Z","date_created":"2020-04-20T10:43:36Z","creator":"dernst","file_id":"7667","file_name":"2020_NanoLetters_Felhofer.pdf","checksum":"fe46146a9c4c620592a1932a8599069e","relation":"main_file","access_level":"open_access","content_type":"application/pdf"}],"issue":"4","page":"2647-2653","language":[{"iso":"eng"}],"quality_controlled":"1","date_published":"2020-04-08T00:00:00Z"},{"date_created":"2020-04-19T22:00:55Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","volume":21,"intvolume":" 21","pmid":1,"article_number":"2459","publication_status":"published","abstract":[{"lang":"eng","text":"Metabotropic γ-aminobutyric acid (GABAB) receptors contribute to the control of network activity and information processing in hippocampal circuits by regulating neuronal excitability and synaptic transmission. The dysfunction in the dentate gyrus (DG) has been implicated in Alzheimer´s disease (AD). Given the involvement of GABAB receptors in AD, to determine their subcellular localisation and possible alteration in granule cells of the DG in a mouse model of AD at 12 months of age, we used high-resolution immunoelectron microscopic analysis. Immunohistochemistry at the light microscopic level showed that the regional and cellular expression pattern of GABAB1 was similar in an AD model mouse expressing mutated human amyloid precursor protein and presenilin1 (APP/PS1) and in age-matched wild type mice. High-resolution immunoelectron microscopy revealed a distance-dependent gradient of immunolabelling for GABAB receptors, increasing from proximal to distal dendrites in both wild type and APP/PS1 mice. However, the overall density of GABAB receptors at the neuronal surface of these postsynaptic compartments of granule cells was significantly reduced in APP/PS1 mice. Parallel to this reduction in surface receptors, we found a significant increase in GABAB1 at cytoplasmic sites. GABAB receptors were also detected at presynaptic sites in the molecular layer of the DG. We also found a decrease in plasma membrane GABAB receptors in axon terminals contacting dendritic spines of granule cells, which was more pronounced in the outer than in the inner molecular layer. Altogether, our data showing post- and presynaptic reduction in surface GABAB receptors in the DG suggest the alteration of the GABAB-mediated modulation of excitability and synaptic transmission in granule cells, which may contribute to the cognitive dysfunctions in the APP/PS1 model of AD"}],"oa":1,"citation":{"chicago":"Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, Ryuichi Shigemoto, Yugo Fukazawa, and Rafael Luján. “Density of GABAB Receptors Is Reduced in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” International Journal of Molecular Sciences. MDPI, 2020. https://doi.org/10.3390/ijms21072459.","mla":"Martín-Belmonte, Alejandro, et al. “Density of GABAB Receptors Is Reduced in Granule Cells of the Hippocampus in a Mouse Model of Alzheimer’s Disease.” International Journal of Molecular Sciences, vol. 21, no. 7, 2459, MDPI, 2020, doi:10.3390/ijms21072459.","apa":"Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Density of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s disease. International Journal of Molecular Sciences. MDPI. https://doi.org/10.3390/ijms21072459","ieee":"A. Martín-Belmonte et al., “Density of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s disease,” International journal of molecular sciences, vol. 21, no. 7. MDPI, 2020.","ista":"Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa L, Martínez-Hernández J, Buisson A, Shigemoto R, Fukazawa Y, Luján R. 2020. Density of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s disease. International journal of molecular sciences. 21(7), 2459.","ama":"Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Density of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model of Alzheimer’s disease. International journal of molecular sciences. 2020;21(7). doi:10.3390/ijms21072459","short":"A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De La Ossa, J. Martínez-Hernández, A. Buisson, R. Shigemoto, Y. Fukazawa, R. Luján, International Journal of Molecular Sciences 21 (2020)."},"department":[{"_id":"RySh"}],"publication":"International journal of molecular sciences","isi":1,"day":"02","scopus_import":"1","quality_controlled":"1","date_published":"2020-04-02T00:00:00Z","language":[{"iso":"eng"}],"issue":"7","file":[{"content_type":"application/pdf","relation":"main_file","checksum":"b9d2f1657d8c4a74b01a62b474d009b0","access_level":"open_access","file_name":"2020_JournMolecSciences_Martin_Belmonte.pdf","creator":"dernst","file_id":"7669","date_created":"2020-04-20T11:43:18Z","date_updated":"2020-07-14T12:48:01Z","file_size":2941197}],"article_type":"original","external_id":{"isi":["000535574200201"],"pmid":["32252271"]},"date_updated":"2023-08-21T06:13:19Z","publication_identifier":{"eissn":["14220067"]},"month":"04","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_processing_charge":"No","_id":"7664","has_accepted_license":"1","oa_version":"Published Version","doi":"10.3390/ijms21072459","publisher":"MDPI","ddc":["570"],"status":"public","title":"Density of GABAB receptors is reduced in granule cells of the hippocampus in a mouse model of Alzheimer's disease","year":"2020","author":[{"full_name":"Martín-Belmonte, Alejandro","last_name":"Martín-Belmonte","first_name":"Alejandro"},{"full_name":"Aguado, Carolina","first_name":"Carolina","last_name":"Aguado"},{"full_name":"Alfaro-Ruíz, Rocío","last_name":"Alfaro-Ruíz","first_name":"Rocío"},{"last_name":"Moreno-Martínez","first_name":"Ana Esther","full_name":"Moreno-Martínez, Ana Esther"},{"full_name":"De La Ossa, Luis","first_name":"Luis","last_name":"De La Ossa"},{"first_name":"José","last_name":"Martínez-Hernández","full_name":"Martínez-Hernández, José"},{"last_name":"Buisson","first_name":"Alain","full_name":"Buisson, Alain"},{"orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","full_name":"Shigemoto, Ryuichi","first_name":"Ryuichi","last_name":"Shigemoto"},{"last_name":"Fukazawa","first_name":"Yugo","full_name":"Fukazawa, Yugo"},{"full_name":"Luján, Rafael","last_name":"Luján","first_name":"Rafael"}],"file_date_updated":"2020-07-14T12:48:01Z","type":"journal_article"}]