[{"day":"02","type":"journal_article","intvolume":" 14","status":"public","publication":"Nature Communications","file_date_updated":"2023-10-16T07:34:49Z","month":"10","article_type":"original","date_published":"2023-10-02T00:00:00Z","scopus_import":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"has_accepted_license":"1","license":"https://creativecommons.org/licenses/by/4.0/","department":[{"_id":"BiCh"},{"_id":"GradSch"}],"date_created":"2023-10-15T22:01:10Z","file":[{"success":1,"file_id":"14432","creator":"dernst","relation":"main_file","content_type":"application/pdf","checksum":"7d1dffd36b672ec679f08f70ce79da87","date_created":"2023-10-16T07:34:49Z","file_size":3194116,"file_name":"2023_NatureComm_Zeng.pdf","access_level":"open_access","date_updated":"2023-10-16T07:34:49Z"}],"citation":{"ieee":"Z. Zeng et al., “Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations,” Nature Communications, vol. 14. Springer Nature, 2023.","apa":"Zeng, Z., Wodaczek, F., Liu, K., Stein, F., Hutter, J., Chen, J., & Cheng, B. (2023). Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-41865-8","chicago":"Zeng, Zezhu, Felix Wodaczek, Keyang Liu, Frederick Stein, Jürg Hutter, Ji Chen, and Bingqing Cheng. “Mechanistic Insight on Water Dissociation on Pristine Low-Index TiO2 Surfaces from Machine Learning Molecular Dynamics Simulations.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-41865-8.","ama":"Zeng Z, Wodaczek F, Liu K, et al. Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. 2023;14. doi:10.1038/s41467-023-41865-8","mla":"Zeng, Zezhu, et al. “Mechanistic Insight on Water Dissociation on Pristine Low-Index TiO2 Surfaces from Machine Learning Molecular Dynamics Simulations.” Nature Communications, vol. 14, 6131, Springer Nature, 2023, doi:10.1038/s41467-023-41865-8.","short":"Z. Zeng, F. Wodaczek, K. Liu, F. Stein, J. Hutter, J. Chen, B. Cheng, Nature Communications 14 (2023).","ista":"Zeng Z, Wodaczek F, Liu K, Stein F, Hutter J, Chen J, Cheng B. 2023. Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations. Nature Communications. 14, 6131."},"publication_status":"published","abstract":[{"text":"Water adsorption and dissociation processes on pristine low-index TiO2 interfaces are important but poorly understood outside the well-studied anatase (101) and rutile (110). To understand these, we construct three sets of machine learning potentials that are simultaneously applicable to various TiO2 surfaces, based on three density-functional-theory approximations. Here we show the water dissociation free energies on seven pristine TiO2 surfaces, and predict that anatase (100), anatase (110), rutile (001), and rutile (011) favor water dissociation, anatase (101) and rutile (100) have mostly molecular adsorption, while the simulations of rutile (110) sensitively depend on the slab thickness and molecular adsorption is preferred with thick slabs. Moreover, using an automated algorithm, we reveal that these surfaces follow different types of atomistic mechanisms for proton transfer and water dissociation: one-step, two-step, or both. These mechanisms can be rationalized based on the arrangements of water molecules on the different surfaces. Our finding thus demonstrates that the different pristine TiO2 surfaces react with water in distinct ways, and cannot be represented using just the low-energy anatase (101) and rutile (110) surfaces.","lang":"eng"}],"author":[{"id":"54a2c730-803f-11ed-ab7e-95b29d2680e7","last_name":"Zeng","full_name":"Zeng, Zezhu","first_name":"Zezhu"},{"id":"8b4b6a9f-32b0-11ee-9fa8-bbe85e26258e","orcid":"0009-0000-1457-795X","last_name":"Wodaczek","full_name":"Wodaczek, Felix","first_name":"Felix"},{"first_name":"Keyang","last_name":"Liu","full_name":"Liu, Keyang"},{"full_name":"Stein, Frederick","last_name":"Stein","first_name":"Frederick"},{"first_name":"Jürg","last_name":"Hutter","full_name":"Hutter, Jürg"},{"first_name":"Ji","last_name":"Chen","full_name":"Chen, Ji"},{"last_name":"Cheng","full_name":"Cheng, Bingqing","orcid":"0000-0002-3584-9632","first_name":"Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9"}],"arxiv":1,"article_processing_charge":"Yes","date_updated":"2023-12-13T13:02:07Z","volume":14,"oa":1,"publication_identifier":{"eissn":["2041-1723"]},"_id":"14425","pmid":1,"oa_version":"Published Version","quality_controlled":"1","project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"}],"acknowledgement":"F.S., J.H., and B.C. thank the Swiss National Supercomputing Centre (CSCS) for the generous allocation of CPU hours via production project s1108 at the Piz Daint supercomputer. B.C. acknowledges resources provided by the Cambridge Tier-2 system operated by the University of Cambridge Research Computing Service funded by EPSRC Tier-2 capital grant EP/P020259/1. J.C. acknowledges the Beijing Natural Science Foundation for support under grant No. JQ22001. F.S., and J.H. thank the Swiss Platform for Advanced Scientific Computing (PASC) via the 2021-2024 “Ab Initio Molecular Dynamics at the Exa-Scale” project. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","doi":"10.1038/s41467-023-41865-8","ec_funded":1,"title":"Mechanistic insight on water dissociation on pristine low-index TiO2 surfaces from machine learning molecular dynamics simulations","external_id":{"arxiv":["2303.07433"],"isi":["001084354900008"],"pmid":["37783698"]},"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_number":"6131","isi":1,"related_material":{"link":[{"url":"https://github.com/BingqingCheng/TiO2-water","relation":"software"}]},"ddc":["540","000"]},{"abstract":[{"lang":"eng","text":"To meet the physiological demands of the body, organs need to establish a functional tissue architecture and adequate size as the embryo develops to adulthood. In the liver, uni- and bipotent progenitor differentiation into hepatocytes and biliary epithelial cells (BECs), and their relative proportions, comprise the functional architecture. Yet, the contribution of individual liver progenitors at the organ level to both fates, and their specific proportion, is unresolved. Combining mathematical modelling with organ-wide, multispectral FRaeppli-NLS lineage tracing in zebrafish, we demonstrate that a precise BEC-to-hepatocyte ratio is established (i) fast, (ii) solely by heterogeneous lineage decisions from uni- and bipotent progenitors, and (iii) independent of subsequent cell type–specific proliferation. Extending lineage tracing to adulthood determined that embryonic cells undergo spatially heterogeneous three-dimensional growth associated with distinct environments. Strikingly, giant clusters comprising almost half a ventral lobe suggest lobe-specific dominant-like growth behaviours. We show substantial hepatocyte polyploidy in juveniles representing another hallmark of postembryonic liver growth. Our findings uncover heterogeneous progenitor contributions to tissue architecture-defining cell type proportions and postembryonic organ growth as key mechanisms forming the adult liver."}],"author":[{"first_name":"Iris A.","full_name":"Unterweger, Iris A.","last_name":"Unterweger"},{"first_name":"Julie","last_name":"Klepstad","full_name":"Klepstad, Julie"},{"full_name":"Hannezo, Edouard B","last_name":"Hannezo","orcid":"0000-0001-6005-1561","first_name":"Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Pia R.","full_name":"Lundegaard, Pia R.","last_name":"Lundegaard"},{"first_name":"Ala","full_name":"Trusina, Ala","last_name":"Trusina"},{"last_name":"Ober","full_name":"Ober, Elke A.","first_name":"Elke A."}],"citation":{"apa":"Unterweger, I. A., Klepstad, J., Hannezo, E. B., Lundegaard, P. R., Trusina, A., & Ober, E. A. (2023). Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.3002315","ieee":"I. A. Unterweger, J. Klepstad, E. B. Hannezo, P. R. Lundegaard, A. Trusina, and E. A. Ober, “Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics,” PLoS Biology, vol. 21, no. 10. Public Library of Science, 2023.","chicago":"Unterweger, Iris A., Julie Klepstad, Edouard B Hannezo, Pia R. Lundegaard, Ala Trusina, and Elke A. Ober. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology. Public Library of Science, 2023. https://doi.org/10.1371/journal.pbio.3002315.","ama":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 2023;21(10). doi:10.1371/journal.pbio.3002315","mla":"Unterweger, Iris A., et al. “Lineage Tracing Identifies Heterogeneous Hepatoblast Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” PLoS Biology, vol. 21, no. 10, e3002315, Public Library of Science, 2023, doi:10.1371/journal.pbio.3002315.","ista":"Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. 2023. Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics. PLoS Biology. 21(10), e3002315.","short":"I.A. Unterweger, J. Klepstad, E.B. Hannezo, P.R. Lundegaard, A. Trusina, E.A. Ober, PLoS Biology 21 (2023)."},"publication_status":"published","publication_identifier":{"eissn":["1545-7885"]},"_id":"14426","quality_controlled":"1","oa_version":"Published Version","project":[{"grant_number":"851288","name":"Design Principles of Branching Morphogenesis","_id":"05943252-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank the Ober group for discussion and comments on the manuscript. We are grateful to\r\nDr. F. Lemaigre for feedback on the manuscript and Dr. T. Piotrowski for invaluable support.\r\nWe thank the department of experimental medicine (AEM) in Copenhagen for expert fish\r\ncare. We gratefully acknowledge the DanStem Imaging Platform (University of Copenhagen)\r\nfor support and assistance in this work.\r\nThis work is supported by Novo Nordisk Foundation grant NNF17CC0027852 (EAO);\r\nNordisk Foundation grant NNF19OC0058327 (EAO); Novo Nordisk Foundation grant\r\nNNF17OC0031204 (PRL); https://novonordiskfonden.dk/en/; Danish National\r\nResearch Foundation grant DNRF116 (EAO and AT); https://dg.dk/en/; John and Birthe Meyer\r\nFoundation (PRL) and European Research Council (ERC) under the EU Horizon 2020 research and Innovation Programme Grant Agreement No. 851288 (EH).","article_processing_charge":"No","oa":1,"volume":21,"date_updated":"2023-10-16T07:25:48Z","title":"Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics","year":"2023","doi":"10.1371/journal.pbio.3002315","ec_funded":1,"related_material":{"link":[{"relation":"software","url":"https://github.com/JulieKlepstad/LiverDevelopment"}]},"ddc":["570"],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_number":"e3002315","intvolume":" 21","status":"public","day":"04","type":"journal_article","publication":"PLoS Biology","issue":"10","file_date_updated":"2023-10-16T07:20:49Z","scopus_import":"1","publisher":"Public Library of Science","language":[{"iso":"eng"}],"month":"10","article_type":"original","date_published":"2023-10-04T00:00:00Z","file":[{"date_created":"2023-10-16T07:20:49Z","checksum":"40a2b11b41d70a0e5939f8a52b66e389","file_name":"2023_PloSBiology_Unterweger.pdf","file_size":6193110,"date_updated":"2023-10-16T07:20:49Z","access_level":"open_access","success":1,"creator":"dernst","file_id":"14431","content_type":"application/pdf","relation":"main_file"}],"date_created":"2023-10-15T22:01:10Z","has_accepted_license":"1","department":[{"_id":"EdHa"}]},{"day":"29","type":"journal_article","status":"public","publication":"Communications in Mathematical Physics","month":"09","article_type":"original","date_published":"2023-09-29T00:00:00Z","scopus_import":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"department":[{"_id":"VaKa"}],"date_created":"2023-10-15T22:01:11Z","citation":{"mla":"Chen, Jianyu, et al. “Length Spectrum Rigidity for Piecewise Analytic Bunimovich Billiards.” Communications in Mathematical Physics, Springer Nature, 2023, doi:10.1007/s00220-023-04837-z.","ama":"Chen J, Kaloshin V, Zhang HK. Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics. 2023. doi:10.1007/s00220-023-04837-z","short":"J. Chen, V. Kaloshin, H.K. Zhang, Communications in Mathematical Physics (2023).","ista":"Chen J, Kaloshin V, Zhang HK. 2023. Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics.","ieee":"J. Chen, V. Kaloshin, and H. K. Zhang, “Length spectrum rigidity for piecewise analytic Bunimovich billiards,” Communications in Mathematical Physics. Springer Nature, 2023.","apa":"Chen, J., Kaloshin, V., & Zhang, H. K. (2023). Length spectrum rigidity for piecewise analytic Bunimovich billiards. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04837-z","chicago":"Chen, Jianyu, Vadim Kaloshin, and Hong Kun Zhang. “Length Spectrum Rigidity for Piecewise Analytic Bunimovich Billiards.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04837-z."},"publication_status":"epub_ahead","abstract":[{"lang":"eng","text":"In the paper, we establish Squash Rigidity Theorem—the dynamical spectral rigidity for piecewise analytic Bunimovich squash-type stadia whose convex arcs are homothetic. We also establish Stadium Rigidity Theorem—the dynamical spectral rigidity for piecewise analytic Bunimovich stadia whose flat boundaries are a priori fixed. In addition, for smooth Bunimovich squash-type stadia we compute the Lyapunov exponents along the maximal period two orbit, as well as the value of the Peierls’ Barrier function from the maximal marked length spectrum associated to the rotation number 2n/4n+1."}],"author":[{"first_name":"Jianyu","full_name":"Chen, Jianyu","last_name":"Chen"},{"id":"FE553552-CDE8-11E9-B324-C0EBE5697425","first_name":"Vadim","orcid":"0000-0002-6051-2628","last_name":"Kaloshin","full_name":"Kaloshin, Vadim"},{"last_name":"Zhang","full_name":"Zhang, Hong Kun","first_name":"Hong Kun"}],"arxiv":1,"article_processing_charge":"No","oa":1,"date_updated":"2023-12-13T13:02:44Z","publication_identifier":{"eissn":["1432-0916"],"issn":["0010-3616"]},"_id":"14427","quality_controlled":"1","project":[{"call_identifier":"H2020","_id":"9B8B92DE-BA93-11EA-9121-9846C619BF3A","name":"Spectral rigidity and integrability for billiards and geodesic flows","grant_number":"885707"}],"oa_version":"Preprint","acknowledgement":"VK acknowledges a partial support by the NSF grant DMS-1402164 and ERC Grant #885707. Discussions with Martin Leguil and Jacopo De Simoi were very useful. JC visited the University of Maryland and thanks for the hospitality. Also, JC was partially supported by the National Key Research and Development Program of China (No.2022YFA1005802), the NSFC Grant 12001392 and NSF of Jiangsu BK20200850. H.-K. Zhang is partially supported by the National Science Foundation (DMS-2220211), as well as Simons Foundation Collaboration Grants for Mathematicians (706383).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","doi":"10.1007/s00220-023-04837-z","ec_funded":1,"title":"Length spectrum rigidity for piecewise analytic Bunimovich billiards","external_id":{"arxiv":["1902.07330"],"isi":["001073177200001"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1902.07330"}],"isi":1},{"page":"514-546","publication":"43rd Annual International Cryptology Conference","status":"public","intvolume":" 14082","type":"conference","day":"09","date_created":"2023-10-15T22:01:11Z","conference":{"location":"Santa Barbara, CA, United States","end_date":"2023-08-24","name":"CRYPTO: Advances in Cryptology","start_date":"2023-08-20"},"department":[{"_id":"KrPi"}],"language":[{"iso":"eng"}],"scopus_import":"1","publisher":"Springer Nature","date_published":"2023-08-09T00:00:00Z","month":"08","quality_controlled":"1","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783031385445"],"issn":["0302-9743"]},"_id":"14428","article_processing_charge":"No","volume":14082,"oa":1,"date_updated":"2023-10-16T08:02:11Z","author":[{"last_name":"Dodis","full_name":"Dodis, Yevgeniy","first_name":"Yevgeniy"},{"full_name":"Ferguson, Niels","last_name":"Ferguson","first_name":"Niels"},{"full_name":"Goldin, Eli","last_name":"Goldin","first_name":"Eli"},{"first_name":"Peter","full_name":"Hall, Peter","last_name":"Hall"},{"first_name":"Krzysztof Z","orcid":"0000-0002-9139-1654","last_name":"Pietrzak","full_name":"Pietrzak, Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87"}],"abstract":[{"text":"Suppose we have two hash functions h1 and h2, but we trust the security of only one of them. To mitigate this worry, we wish to build a hash combiner Ch1,h2 which is secure so long as one of the underlying hash functions is. This question has been well-studied in the regime of collision resistance. In this case, concatenating the two hash function outputs clearly works. Unfortunately, a long series of works (Boneh and Boyen, CRYPTO’06; Pietrzak, Eurocrypt’07; Pietrzak, CRYPTO’08) showed no (noticeably) shorter combiner for collision resistance is possible.\r\nIn this work, we revisit this pessimistic state of affairs, motivated by the observation that collision-resistance is insufficient for many interesting applications of cryptographic hash functions anyway. We argue the right formulation of the “hash combiner” is to build what we call random oracle (RO) combiners, utilizing stronger assumptions for stronger constructions.\r\nIndeed, we circumvent the previous lower bounds for collision resistance by constructing a simple length-preserving RO combiner C˜h1,h2Z1,Z2(M)=h1(M,Z1)⊕h2(M,Z2),where Z1,Z2\r\n are random salts of appropriate length. We show that this extra randomness is necessary for RO combiners, and indeed our construction is somewhat tight with this lower bound.\r\nOn the negative side, we show that one cannot generically apply the composition theorem to further replace “monolithic” hash functions h1 and h2 by some simpler indifferentiable construction (such as the Merkle-Damgård transformation) from smaller components, such as fixed-length compression functions. Finally, despite this issue, we directly prove collision resistance of the Merkle-Damgård variant of our combiner, where h1 and h2 are replaced by iterative Merkle-Damgård hashes applied to a fixed-length compression function. Thus, we can still subvert the concatenation barrier for collision-resistance combiners while utilizing practically small fixed-length components underneath.","lang":"eng"}],"citation":{"ista":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. 2023. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. 43rd Annual International Cryptology Conference. CRYPTO: Advances in Cryptology, LNCS, vol. 14082, 514–546.","short":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, K.Z. Pietrzak, in:, 43rd Annual International Cryptology Conference, Springer Nature, 2023, pp. 514–546.","ama":"Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In: 43rd Annual International Cryptology Conference. Vol 14082. Springer Nature; 2023:514-546. doi:10.1007/978-3-031-38545-2_17","mla":"Dodis, Yevgeniy, et al. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” 43rd Annual International Cryptology Conference, vol. 14082, Springer Nature, 2023, pp. 514–46, doi:10.1007/978-3-031-38545-2_17.","chicago":"Dodis, Yevgeniy, Niels Ferguson, Eli Goldin, Peter Hall, and Krzysztof Z Pietrzak. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.” In 43rd Annual International Cryptology Conference, 14082:514–46. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-38545-2_17.","ieee":"Y. Dodis, N. Ferguson, E. Goldin, P. Hall, and K. Z. Pietrzak, “Random oracle combiners: Breaking the concatenation barrier for collision-resistance,” in 43rd Annual International Cryptology Conference, Santa Barbara, CA, United States, 2023, vol. 14082, pp. 514–546.","apa":"Dodis, Y., Ferguson, N., Goldin, E., Hall, P., & Pietrzak, K. Z. (2023). Random oracle combiners: Breaking the concatenation barrier for collision-resistance. In 43rd Annual International Cryptology Conference (Vol. 14082, pp. 514–546). Santa Barbara, CA, United States: Springer Nature. https://doi.org/10.1007/978-3-031-38545-2_17"},"publication_status":"published","main_file_link":[{"url":"https://eprint.iacr.org/2023/1041","open_access":"1"}],"alternative_title":["LNCS"],"title":"Random oracle combiners: Breaking the concatenation barrier for collision-resistance","doi":"10.1007/978-3-031-38545-2_17","year":"2023"},{"publisher":"Wiley","language":[{"iso":"eng"}],"month":"07","date_published":"2023-07-24T00:00:00Z","article_type":"original","date_created":"2023-10-17T10:52:23Z","department":[{"_id":"MaIb"}],"status":"public","day":"24","type":"journal_article","publication":"Advanced Materials","external_id":{"isi":["001083876900001"],"pmid":["37487245"]},"title":"A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries","acknowledged_ssus":[{"_id":"EM-Fac"}],"doi":"10.1002/adma.202303719","year":"2023","article_number":"2303719","isi":1,"abstract":[{"text":"High entropy alloys (HEAs) are highly suitable candidate catalysts for oxygen evolution and reduction reactions (OER/ORR) as they offer numerous parameters for optimizing the electronic structure and catalytic sites. Herein, FeCoNiMoW HEA nanoparticles are synthesized using a solution‐based low‐temperature approach. Such FeCoNiMoW nanoparticles show high entropy properties, subtle lattice distortions, and modulated electronic structure, leading to superior OER performance with an overpotential of 233 mV at 10 mA cm−2 and 276 mV at 100 mA cm−2. Density functional theory calculations reveal the electronic structures of the FeCoNiMoW active sites with an optimized d‐band center position that enables suitable adsorption of OOH* intermediates and reduces the Gibbs free energy barrier in the OER process. Aqueous zinc–air batteries (ZABs) based on this HEA demonstrate a high open circuit potential of 1.59 V, a peak power density of 116.9 mW cm−2, a specific capacity of 857 mAh gZn−1, and excellent stability for over 660 h of continuous charge–discharge cycles. Flexible and solid ZABs are also assembled and tested, displaying excellent charge–discharge performance at different bending angles. This work shows the significance of 4d/5d metal‐modulated electronic structure and optimized adsorption ability to improve the performance of OER/ORR, ZABs, and beyond.","lang":"eng"}],"keyword":["Mechanical Engineering","Mechanics of Materials","General Materials Science"],"author":[{"last_name":"He","full_name":"He, Ren","first_name":"Ren"},{"full_name":"Yang, Linlin","last_name":"Yang","first_name":"Linlin"},{"full_name":"Zhang, Yu","last_name":"Zhang","first_name":"Yu"},{"first_name":"Daochuan","last_name":"Jiang","full_name":"Jiang, Daochuan"},{"id":"BB243B88-D767-11E9-B658-BC13E6697425","first_name":"Seungho","orcid":"0000-0002-6962-8598","last_name":"Lee","full_name":"Lee, Seungho"},{"id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","full_name":"Horta, Sharona","last_name":"Horta","first_name":"Sharona"},{"first_name":"Zhifu","full_name":"Liang, Zhifu","last_name":"Liang"},{"first_name":"Xuan","last_name":"Lu","full_name":"Lu, Xuan"},{"full_name":"Ostovari Moghaddam, Ahmad","last_name":"Ostovari Moghaddam","first_name":"Ahmad"},{"first_name":"Junshan","full_name":"Li, Junshan","last_name":"Li"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","last_name":"Ibáñez","first_name":"Maria"},{"first_name":"Ying","full_name":"Xu, Ying","last_name":"Xu"},{"full_name":"Zhou, Yingtang","last_name":"Zhou","first_name":"Yingtang"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"publication_status":"epub_ahead","citation":{"ieee":"R. He et al., “A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries,” Advanced Materials. Wiley, 2023.","apa":"He, R., Yang, L., Zhang, Y., Jiang, D., Lee, S., Horta, S., … Cabot, A. (2023). A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202303719","chicago":"He, Ren, Linlin Yang, Yu Zhang, Daochuan Jiang, Seungho Lee, Sharona Horta, Zhifu Liang, et al. “A 3d‐4d‐5d High Entropy Alloy as a Bifunctional Oxygen Catalyst for Robust Aqueous Zinc–Air Batteries.” Advanced Materials. Wiley, 2023. https://doi.org/10.1002/adma.202303719.","ama":"He R, Yang L, Zhang Y, et al. A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced Materials. 2023. doi:10.1002/adma.202303719","mla":"He, Ren, et al. “A 3d‐4d‐5d High Entropy Alloy as a Bifunctional Oxygen Catalyst for Robust Aqueous Zinc–Air Batteries.” Advanced Materials, 2303719, Wiley, 2023, doi:10.1002/adma.202303719.","short":"R. He, L. Yang, Y. Zhang, D. Jiang, S. Lee, S. Horta, Z. Liang, X. Lu, A. Ostovari Moghaddam, J. Li, M. Ibáñez, Y. Xu, Y. Zhou, A. Cabot, Advanced Materials (2023).","ista":"He R, Yang L, Zhang Y, Jiang D, Lee S, Horta S, Liang Z, Lu X, Ostovari Moghaddam A, Li J, Ibáñez M, Xu Y, Zhou Y, Cabot A. 2023. A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced Materials., 2303719."},"pmid":1,"_id":"14434","publication_identifier":{"issn":["0935-9648","1521-4095"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The authors acknowledge funding from Generalitat de Catalunya 2021 SGR 01581; the project COMBENERGY, PID2019-105490RB-C32, from the Spanish Ministerio de Ciencia e Innovación; the National Natural Science Foundation of China (22102002); the Anhui Provincial Natural Science Foundation (2108085QE192); Zhejiang Province key research and development project (2023C01191); the Foundation of State Key Laboratory of High-efficiency Utilization of Coal and Green Chemical Engineering (GrantNo.2022-K31); and The Key Research and Development Program of Hebei Province (20314305D). IREC is funded by the CERCA Programme from the Generalitat de Catalunya. L.L.Y. thanks the China Scholarship Council (CSC) for the scholarship support (202008130132). This research was supported by the Scientific Service Units (SSU) of ISTA (Institute of Science and Technology Austria) through resources provided by the Electron Microscopy Facility (EMF). S.L., S.H., and M.I. acknowledge funding by ISTA and the Werner Siemens.","oa_version":"None","project":[{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"quality_controlled":"1","date_updated":"2023-12-13T13:03:23Z","article_processing_charge":"No"},{"date_updated":"2023-12-13T13:03:53Z","article_processing_charge":"No","publication":"Advanced Materials","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","quality_controlled":"1","_id":"14435","pmid":1,"publication_identifier":{"eissn":["1521-4095"],"issn":["0935-9648"]},"type":"journal_article","publication_status":"accepted","citation":{"ama":"Zeng G, Sun Q, Horta S, et al. A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries. Advanced Materials. doi:10.1002/adma.202305128","mla":"Zeng, Guifang, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc Ion Batteries: Mechanism and Application in Printed Flexible Batteries.” Advanced Materials, 2305128, Wiley, doi:10.1002/adma.202305128.","short":"G. Zeng, Q. Sun, S. Horta, S. Wang, X. Lu, C. Zhang, J. Li, J. Li, L. Ci, Y. Tian, M. Ibáñez, A. Cabot, Advanced Materials (n.d.).","ista":"Zeng G, Sun Q, Horta S, Wang S, Lu X, Zhang C, Li J, Li J, Ci L, Tian Y, Ibáñez M, Cabot A. A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries. Advanced Materials., 2305128.","ieee":"G. Zeng et al., “A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries,” Advanced Materials. Wiley.","apa":"Zeng, G., Sun, Q., Horta, S., Wang, S., Lu, X., Zhang, C., … Cabot, A. (n.d.). A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202305128","chicago":"Zeng, Guifang, Qing Sun, Sharona Horta, Shang Wang, Xuan Lu, Chaoyue Zhang, Jing Li, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc Ion Batteries: Mechanism and Application in Printed Flexible Batteries.” Advanced Materials. Wiley, n.d. https://doi.org/10.1002/adma.202305128."},"day":"09","keyword":["Mechanical Engineering","Mechanics of Materials","General Materials Science"],"status":"public","author":[{"first_name":"Guifang","last_name":"Zeng","full_name":"Zeng, Guifang"},{"first_name":"Qing","last_name":"Sun","full_name":"Sun, Qing"},{"id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","first_name":"Sharona","full_name":"Horta, Sharona","last_name":"Horta"},{"last_name":"Wang","full_name":"Wang, Shang","first_name":"Shang"},{"first_name":"Xuan","full_name":"Lu, Xuan","last_name":"Lu"},{"first_name":"Chaoyue","last_name":"Zhang","full_name":"Zhang, Chaoyue"},{"last_name":"Li","full_name":"Li, Jing","first_name":"Jing"},{"full_name":"Li, Junshan","last_name":"Li","first_name":"Junshan"},{"first_name":"Lijie","last_name":"Ci","full_name":"Ci, Lijie"},{"full_name":"Tian, Yanhong","last_name":"Tian","first_name":"Yanhong"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","full_name":"Ibáñez, Maria","first_name":"Maria"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"abstract":[{"text":"Low‐cost, safe, and environmental‐friendly rechargeable aqueous zinc‐ion batteries (ZIBs) are promising as next‐generation energy storage devices for wearable electronics among other applications. However, sluggish ionic transport kinetics and the unstable electrode structure during ionic insertion/extraction hampers their deployment. Herein, we propose a new cathode material based on a layered metal chalcogenide (LMC), bismuth telluride (Bi2Te3), coated with polypyrrole (PPy). Taking advantage of the PPy coating, the Bi2Te3@PPy composite presents strong ionic absorption affinity, high oxidation resistance, and high structural stability. The ZIBs based on Bi2Te3@PPy cathodes exhibit high capacities and ultra‐long lifespans of over 5000 cycles. They also present outstanding stability even under bending. In addition, we analyze here the reaction mechanism using in situ X‐ray diffraction, X‐ray photoelectron spectroscopy, and computational tools and demonstrate that, in the aqueous system, Zn2+ is not inserted into the cathode as previously assumed. In contrast, proton charge storage dominates the process. Overall, this work not only shows the great potential of LMCs as ZIBs cathode materials and the advantages of PPy coating, but also clarifies the charge/discharge mechanism in rechargeable ZIBs based on LMCs.","lang":"eng"}],"department":[{"_id":"MaIb"}],"isi":1,"article_number":"2305128","date_created":"2023-10-17T10:53:56Z","article_type":"original","date_published":"2023-08-09T00:00:00Z","year":"2023","month":"08","doi":"10.1002/adma.202305128","language":[{"iso":"eng"}],"publisher":"Wiley","external_id":{"pmid":["37555532"],"isi":["001085681000001"]},"title":"A layered Bi2Te3@PPy cathode for aqueous zinc ion batteries: Mechanism and application in printed flexible batteries"},{"author":[{"first_name":"Morris","orcid":"0000-0002-6249-0928","last_name":"Brooks","full_name":"Brooks, Morris","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425"},{"first_name":"Robert","last_name":"Seiringer","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"abstract":[{"text":"We study the Fröhlich polaron model in R3, and establish the subleading term in the strong coupling asymptotics of its ground state energy, corresponding to the quantum corrections to the classical energy determined by the Pekar approximation.","lang":"eng"}],"publication_status":"published","citation":{"chicago":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04841-3.","ieee":"M. Brooks and R. Seiringer, “The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy,” Communications in Mathematical Physics, vol. 404. Springer Nature, pp. 287–337, 2023.","apa":"Brooks, M., & Seiringer, R. (2023). The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04841-3","short":"M. Brooks, R. Seiringer, Communications in Mathematical Physics 404 (2023) 287–337.","ista":"Brooks M, Seiringer R. 2023. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 404, 287–337.","mla":"Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics, vol. 404, Springer Nature, 2023, pp. 287–337, doi:10.1007/s00220-023-04841-3.","ama":"Brooks M, Seiringer R. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 2023;404:287-337. doi:10.1007/s00220-023-04841-3"},"acknowledgement":"Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC grant agreement No 694227 is acknowledged. Open access funding provided by Institute of Science and Technology (IST Austria).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","oa_version":"Published Version","project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","name":"Analysis of quantum many-body systems","call_identifier":"H2020","grant_number":"694227"}],"_id":"14441","publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"volume":404,"date_updated":"2023-10-31T12:22:51Z","oa":1,"article_processing_charge":"Yes (via OA deal)","arxiv":1,"external_id":{"arxiv":["2207.03156"]},"title":"The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy","ec_funded":1,"year":"2023","doi":"10.1007/s00220-023-04841-3","ddc":["510"],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","intvolume":" 404","type":"journal_article","day":"01","file_date_updated":"2023-10-31T12:21:39Z","page":"287-337","publication":"Communications in Mathematical Physics","language":[{"iso":"eng"}],"publisher":"Springer Nature","scopus_import":"1","date_published":"2023-11-01T00:00:00Z","article_type":"original","month":"11","file":[{"success":1,"creator":"dernst","file_id":"14477","content_type":"application/pdf","relation":"main_file","date_created":"2023-10-31T12:21:39Z","checksum":"1ae49b39247cb6b40ff75997381581b8","file_name":"2023_CommMathPhysics_Brooks.pdf","file_size":832375,"date_updated":"2023-10-31T12:21:39Z","access_level":"open_access"}],"date_created":"2023-10-22T22:01:13Z","department":[{"_id":"RoSe"}],"has_accepted_license":"1"},{"external_id":{"pmid":["37819444"]},"title":"Mixtures of self-propelled particles interacting with asymmetric obstacles","doi":"10.1140/epje/s10189-023-00354-y","year":"2023","article_number":"95","abstract":[{"text":"In the presence of an obstacle, active particles condensate into a surface “wetting” layer due to persistent motion. If the obstacle is asymmetric, a rectification current arises in addition to wetting. Asymmetric geometries are therefore commonly used to concentrate microorganisms like bacteria and sperms. However, most studies neglect the fact that biological active matter is diverse, composed of individuals with distinct self-propulsions. Using simulations, we study a mixture of “fast” and “slow” active Brownian disks in two dimensions interacting with large half-disk obstacles. With this prototypical obstacle geometry, we analyze how the stationary collective behavior depends on the degree of self-propulsion “diversity,” defined as proportional to the difference between the self-propulsion speeds, while keeping the average self-propulsion speed fixed. A wetting layer rich in fast particles arises. The rectification current is amplified by speed diversity due to a superlinear dependence of rectification on self-propulsion speed, which arises from cooperative effects. Thus, the total rectification current cannot be obtained from an effective one-component active fluid with the same average self-propulsion speed, highlighting the importance of considering diversity in active matter.","lang":"eng"}],"author":[{"last_name":"Rojas Vega","full_name":"Rojas Vega, Mauricio Nicolas","first_name":"Mauricio Nicolas","id":"441e7207-f91f-11ec-b67c-9e6fe3d8fd6d"},{"full_name":"De Castro, Pablo","last_name":"De Castro","first_name":"Pablo"},{"first_name":"Rodrigo","last_name":"Soto","full_name":"Soto, Rodrigo"}],"publication_status":"published","citation":{"short":"M.N. Rojas Vega, P. De Castro, R. Soto, The European Physical Journal E 46 (2023).","ista":"Rojas Vega MN, De Castro P, Soto R. 2023. Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. 46(10), 95.","mla":"Rojas Vega, Mauricio Nicolas, et al. “Mixtures of Self-Propelled Particles Interacting with Asymmetric Obstacles.” The European Physical Journal E, vol. 46, no. 10, 95, Springer Nature, 2023, doi:10.1140/epje/s10189-023-00354-y.","ama":"Rojas Vega MN, De Castro P, Soto R. Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. 2023;46(10). doi:10.1140/epje/s10189-023-00354-y","chicago":"Rojas Vega, Mauricio Nicolas, Pablo De Castro, and Rodrigo Soto. “Mixtures of Self-Propelled Particles Interacting with Asymmetric Obstacles.” The European Physical Journal E. Springer Nature, 2023. https://doi.org/10.1140/epje/s10189-023-00354-y.","apa":"Rojas Vega, M. N., De Castro, P., & Soto, R. (2023). Mixtures of self-propelled particles interacting with asymmetric obstacles. The European Physical Journal E. Springer Nature. https://doi.org/10.1140/epje/s10189-023-00354-y","ieee":"M. N. Rojas Vega, P. De Castro, and R. Soto, “Mixtures of self-propelled particles interacting with asymmetric obstacles,” The European Physical Journal E, vol. 46, no. 10. Springer Nature, 2023."},"_id":"14442","pmid":1,"publication_identifier":{"eissn":["1292-895X"],"issn":["1292-8941"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"MR-V and RS are supported by Fondecyt Grant No. 1220536 and Millennium Science Initiative Program NCN19_170D of ANID, Chile. P.d.C. was supported by Scholarships Nos. 2021/10139-2 and 2022/13872-5 and ICTP-SAIFR Grant No. 2021/14335-0, all granted by São Paulo Research Foundation (FAPESP), Brazil.","quality_controlled":"1","oa_version":"None","volume":46,"date_updated":"2023-10-31T11:16:41Z","article_processing_charge":"No","publisher":"Springer Nature","scopus_import":"1","language":[{"iso":"eng"}],"month":"10","article_type":"original","date_published":"2023-10-01T00:00:00Z","date_created":"2023-10-22T22:01:13Z","department":[{"_id":"AnSa"}],"intvolume":" 46","status":"public","day":"01","type":"journal_article","issue":"10","publication":"The European Physical Journal E"},{"publication":"JAMA Psychiatry","issue":"10","page":"1066-1074","intvolume":" 80","status":"public","day":"01","type":"journal_article","date_created":"2023-10-22T22:01:14Z","department":[{"_id":"GaNo"}],"scopus_import":"1","publisher":"American Medical Association","language":[{"iso":"eng"}],"month":"10","date_published":"2023-10-01T00:00:00Z","article_type":"review","publication_identifier":{"eissn":["2168-6238"]},"pmid":1,"_id":"14443","oa_version":"None","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","volume":80,"date_updated":"2023-10-31T12:17:20Z","abstract":[{"lang":"eng","text":"Importance Climate change, pollution, urbanization, socioeconomic inequality, and psychosocial effects of the COVID-19 pandemic have caused massive changes in environmental conditions that affect brain health during the life span, both on a population level as well as on the level of the individual. How these environmental factors influence the brain, behavior, and mental illness is not well known.\r\nObservations A research strategy enabling population neuroscience to contribute to identify brain mechanisms underlying environment-related mental illness by leveraging innovative enrichment tools for data federation, geospatial observation, climate and pollution measures, digital health, and novel data integration techniques is described. This strategy can inform innovative treatments that target causal cognitive and molecular mechanisms of mental illness related to the environment. An example is presented of the environMENTAL Project that is leveraging federated cohort data of over 1.5 million European citizens and patients enriched with deep phenotyping data from large-scale behavioral neuroimaging cohorts to identify brain mechanisms related to environmental adversity underlying symptoms of depression, anxiety, stress, and substance misuse.\r\nConclusions and Relevance This research will lead to the development of objective biomarkers and evidence-based interventions that will significantly improve outcomes of environment-related mental illness."}],"author":[{"first_name":"Gunter","full_name":"Schumann, Gunter","last_name":"Schumann"},{"full_name":"Andreassen, Ole A.","last_name":"Andreassen","first_name":"Ole A."},{"last_name":"Banaschewski","full_name":"Banaschewski, Tobias","first_name":"Tobias"},{"last_name":"Calhoun","full_name":"Calhoun, Vince D.","first_name":"Vince D."},{"first_name":"Nicholas","last_name":"Clinton","full_name":"Clinton, Nicholas"},{"last_name":"Desrivieres","full_name":"Desrivieres, Sylvane","first_name":"Sylvane"},{"last_name":"Brandlistuen","full_name":"Brandlistuen, Ragnhild Eek","first_name":"Ragnhild Eek"},{"first_name":"Jianfeng","last_name":"Feng","full_name":"Feng, Jianfeng"},{"first_name":"Soeren","full_name":"Hese, Soeren","last_name":"Hese"},{"first_name":"Esther","full_name":"Hitchen, Esther","last_name":"Hitchen"},{"first_name":"Per","full_name":"Hoffmann, Per","last_name":"Hoffmann"},{"first_name":"Tianye","full_name":"Jia, Tianye","last_name":"Jia"},{"last_name":"Jirsa","full_name":"Jirsa, Viktor","first_name":"Viktor"},{"first_name":"Andre F.","last_name":"Marquand","full_name":"Marquand, Andre F."},{"first_name":"Frauke","full_name":"Nees, Frauke","last_name":"Nees"},{"last_name":"Nöthen","full_name":"Nöthen, Markus M.","first_name":"Markus M."},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","orcid":"0000-0002-7673-7178","last_name":"Novarino","full_name":"Novarino, Gaia"},{"last_name":"Polemiti","full_name":"Polemiti, Elli","first_name":"Elli"},{"first_name":"Markus","last_name":"Ralser","full_name":"Ralser, Markus"},{"full_name":"Rapp, Michael","last_name":"Rapp","first_name":"Michael"},{"first_name":"Kerstin","full_name":"Schepanski, Kerstin","last_name":"Schepanski"},{"first_name":"Tamara","full_name":"Schikowski, Tamara","last_name":"Schikowski"},{"last_name":"Slater","full_name":"Slater, Mel","first_name":"Mel"},{"full_name":"Sommer, Peter","last_name":"Sommer","first_name":"Peter"},{"full_name":"Stahl, Bernd Carsten","last_name":"Stahl","first_name":"Bernd Carsten"},{"last_name":"Thompson","full_name":"Thompson, Paul M.","first_name":"Paul M."},{"full_name":"Twardziok, Sven","last_name":"Twardziok","first_name":"Sven"},{"last_name":"Van Der Meer","full_name":"Van Der Meer, Dennis","first_name":"Dennis"},{"first_name":"Henrik","last_name":"Walter","full_name":"Walter, Henrik"},{"first_name":"Lars","full_name":"Westlye, Lars","last_name":"Westlye"}],"citation":{"apa":"Schumann, G., Andreassen, O. A., Banaschewski, T., Calhoun, V. D., Clinton, N., Desrivieres, S., … Westlye, L. (2023). Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. American Medical Association. https://doi.org/10.1001/jamapsychiatry.2023.2996","ieee":"G. Schumann et al., “Addressing global environmental challenges to mental health using population neuroscience: A review,” JAMA Psychiatry, vol. 80, no. 10. American Medical Association, pp. 1066–1074, 2023.","chicago":"Schumann, Gunter, Ole A. Andreassen, Tobias Banaschewski, Vince D. Calhoun, Nicholas Clinton, Sylvane Desrivieres, Ragnhild Eek Brandlistuen, et al. “Addressing Global Environmental Challenges to Mental Health Using Population Neuroscience: A Review.” JAMA Psychiatry. American Medical Association, 2023. https://doi.org/10.1001/jamapsychiatry.2023.2996.","ama":"Schumann G, Andreassen OA, Banaschewski T, et al. Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. 2023;80(10):1066-1074. doi:10.1001/jamapsychiatry.2023.2996","mla":"Schumann, Gunter, et al. “Addressing Global Environmental Challenges to Mental Health Using Population Neuroscience: A Review.” JAMA Psychiatry, vol. 80, no. 10, American Medical Association, 2023, pp. 1066–74, doi:10.1001/jamapsychiatry.2023.2996.","ista":"Schumann G, Andreassen OA, Banaschewski T, Calhoun VD, Clinton N, Desrivieres S, Brandlistuen RE, Feng J, Hese S, Hitchen E, Hoffmann P, Jia T, Jirsa V, Marquand AF, Nees F, Nöthen MM, Novarino G, Polemiti E, Ralser M, Rapp M, Schepanski K, Schikowski T, Slater M, Sommer P, Stahl BC, Thompson PM, Twardziok S, Van Der Meer D, Walter H, Westlye L. 2023. Addressing global environmental challenges to mental health using population neuroscience: A review. JAMA Psychiatry. 80(10), 1066–1074.","short":"G. Schumann, O.A. Andreassen, T. Banaschewski, V.D. Calhoun, N. Clinton, S. Desrivieres, R.E. Brandlistuen, J. Feng, S. Hese, E. Hitchen, P. Hoffmann, T. Jia, V. Jirsa, A.F. Marquand, F. Nees, M.M. Nöthen, G. Novarino, E. Polemiti, M. Ralser, M. Rapp, K. Schepanski, T. Schikowski, M. Slater, P. Sommer, B.C. Stahl, P.M. Thompson, S. Twardziok, D. Van Der Meer, H. Walter, L. Westlye, JAMA Psychiatry 80 (2023) 1066–1074."},"publication_status":"published","title":"Addressing global environmental challenges to mental health using population neuroscience: A review","external_id":{"pmid":["37610741"]},"year":"2023","doi":"10.1001/jamapsychiatry.2023.2996"},{"external_id":{"arxiv":["2202.05088"]},"title":"Substructures in Latin squares","year":"2023","doi":"10.1007/s11856-023-2513-9","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2202.05088","open_access":"1"}],"abstract":[{"text":"We prove several results about substructures in Latin squares. First, we explain how to adapt our recent work on high-girth Steiner triple systems to the setting of Latin squares, resolving a conjecture of Linial that there exist Latin squares with arbitrarily high girth. As a consequence, we see that the number of order- n Latin squares with no intercalate (i.e., no 2×2 Latin subsquare) is at least (e−9/4n−o(n))n2. Equivalently, P[N=0]≥e−n2/4−o(n2)=e−(1+o(1))EN\r\n , where N is the number of intercalates in a uniformly random order- n Latin square. \r\nIn fact, extending recent work of Kwan, Sah, and Sawhney, we resolve the general large-deviation problem for intercalates in random Latin squares, up to constant factors in the exponent: for any constant 0<δ≤1 we have P[N≤(1−δ)EN]=exp(−Θ(n2)) and for any constant δ>0 we have P[N≥(1+δ)EN]=exp(−Θ(n4/3logn)). \r\nFinally, as an application of some new general tools for studying substructures in random Latin squares, we show that in almost all order- n Latin squares, the number of cuboctahedra (i.e., the number of pairs of possibly degenerate 2×2 submatrices with the same arrangement of symbols) is of order n4, which is the minimum possible. As observed by Gowers and Long, this number can be interpreted as measuring ``how associative'' the quasigroup associated with the Latin square is.","lang":"eng"}],"author":[{"last_name":"Kwan","full_name":"Kwan, Matthew Alan","orcid":"0000-0002-4003-7567","first_name":"Matthew Alan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3"},{"first_name":"Ashwin","last_name":"Sah","full_name":"Sah, Ashwin"},{"last_name":"Sawhney","full_name":"Sawhney, Mehtaab","first_name":"Mehtaab"},{"first_name":"Michael","last_name":"Simkin","full_name":"Simkin, Michael"}],"publication_status":"published","citation":{"chicago":"Kwan, Matthew Alan, Ashwin Sah, Mehtaab Sawhney, and Michael Simkin. “Substructures in Latin Squares.” Israel Journal of Mathematics. Springer Nature, 2023. https://doi.org/10.1007/s11856-023-2513-9.","apa":"Kwan, M. A., Sah, A., Sawhney, M., & Simkin, M. (2023). Substructures in Latin squares. Israel Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s11856-023-2513-9","ieee":"M. A. Kwan, A. Sah, M. Sawhney, and M. Simkin, “Substructures in Latin squares,” Israel Journal of Mathematics, vol. 256, no. 2. Springer Nature, pp. 363–416, 2023.","ista":"Kwan MA, Sah A, Sawhney M, Simkin M. 2023. Substructures in Latin squares. Israel Journal of Mathematics. 256(2), 363–416.","short":"M.A. Kwan, A. Sah, M. Sawhney, M. Simkin, Israel Journal of Mathematics 256 (2023) 363–416.","ama":"Kwan MA, Sah A, Sawhney M, Simkin M. Substructures in Latin squares. Israel Journal of Mathematics. 2023;256(2):363-416. doi:10.1007/s11856-023-2513-9","mla":"Kwan, Matthew Alan, et al. “Substructures in Latin Squares.” Israel Journal of Mathematics, vol. 256, no. 2, Springer Nature, 2023, pp. 363–416, doi:10.1007/s11856-023-2513-9."},"_id":"14444","publication_identifier":{"eissn":["1565-8511"],"issn":["0021-2172"]},"acknowledgement":"Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-1745302. Sah was supported by the PD Soros Fellowship. Simkin was supported by the Center of Mathematical Sciences and Applications at Harvard University.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","oa_version":"Preprint","arxiv":1,"date_updated":"2023-10-31T11:27:30Z","oa":1,"volume":256,"article_processing_charge":"Yes (in subscription journal)","publisher":"Springer Nature","scopus_import":"1","language":[{"iso":"eng"}],"month":"09","date_published":"2023-09-01T00:00:00Z","article_type":"original","date_created":"2023-10-22T22:01:14Z","department":[{"_id":"MaKw"}],"intvolume":" 256","status":"public","day":"01","type":"journal_article","issue":"2","publication":"Israel Journal of Mathematics","page":"363-416"},{"file_date_updated":"2023-10-31T11:20:31Z","page":"675-717","publication":"Israel Journal of Mathematics","issue":"2","type":"journal_article","day":"01","status":"public","intvolume":" 256","department":[{"_id":"UlWa"}],"has_accepted_license":"1","date_created":"2023-10-22T22:01:14Z","file":[{"file_name":"2023_IsraelJourMath_Wagner.pdf","file_size":623787,"date_created":"2023-10-31T11:20:31Z","checksum":"fbb05619fe4b650f341cc730425dd9c3","date_updated":"2023-10-31T11:20:31Z","access_level":"open_access","success":1,"content_type":"application/pdf","relation":"main_file","file_id":"14475","creator":"dernst"}],"article_type":"original","date_published":"2023-09-01T00:00:00Z","month":"09","language":[{"iso":"eng"}],"scopus_import":"1","publisher":"Springer Nature","article_processing_charge":"Yes (via OA deal)","date_updated":"2023-12-13T13:09:07Z","oa":1,"volume":256,"oa_version":"Published Version","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1565-8511"],"issn":["0021-2172"]},"_id":"14445","citation":{"apa":"Wagner, U., & Wild, P. (2023). Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. Springer Nature. https://doi.org/10.1007/s11856-023-2521-9","ieee":"U. Wagner and P. Wild, “Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes,” Israel Journal of Mathematics, vol. 256, no. 2. Springer Nature, pp. 675–717, 2023.","chicago":"Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and Crossing Numbers of Simplicial Complexes.” Israel Journal of Mathematics. Springer Nature, 2023. https://doi.org/10.1007/s11856-023-2521-9.","ama":"Wagner U, Wild P. Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. 2023;256(2):675-717. doi:10.1007/s11856-023-2521-9","mla":"Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and Crossing Numbers of Simplicial Complexes.” Israel Journal of Mathematics, vol. 256, no. 2, Springer Nature, 2023, pp. 675–717, doi:10.1007/s11856-023-2521-9.","short":"U. Wagner, P. Wild, Israel Journal of Mathematics 256 (2023) 675–717.","ista":"Wagner U, Wild P. 2023. Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes. Israel Journal of Mathematics. 256(2), 675–717."},"publication_status":"published","author":[{"id":"36690CA2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1494-0568","full_name":"Wagner, Uli","last_name":"Wagner","first_name":"Uli"},{"first_name":"Pascal","full_name":"Wild, Pascal","last_name":"Wild","id":"4C20D868-F248-11E8-B48F-1D18A9856A87"}],"abstract":[{"lang":"eng","text":"We prove the following quantitative Borsuk–Ulam-type result (an equivariant analogue of Gromov’s Topological Overlap Theorem): Let X be a free ℤ/2-complex of dimension d with coboundary expansion at least ηk in dimension 0 ≤ k < d. Then for every equivariant map F: X →ℤ/2 ℝd, the fraction of d-simplices σ of X with 0 ∈ F (σ) is at least 2−d Π d−1k=0ηk.\r\n\r\nAs an application, we show that for every sufficiently thick d-dimensional spherical building Y and every map f: Y → ℝ2d, we have f(σ) ∩ f(τ) ≠ ∅ for a constant fraction μd > 0 of pairs {σ, τ} of d-simplices of Y. In particular, such complexes are non-embeddable into ℝ2d, which proves a conjecture of Tancer and Vorwerk for sufficiently thick spherical buildings.\r\n\r\nWe complement these results by upper bounds on the coboundary expansion of two families of simplicial complexes; this indicates some limitations to the bounds one can obtain by straighforward applications of the quantitative Borsuk–Ulam theorem. Specifically, we prove\r\n\r\n• an upper bound of (d + 1)/2d on the normalized (d − 1)-th coboundary expansion constant of complete (d + 1)-partite d-dimensional complexes (under a mild divisibility assumption on the sizes of the parts); and\r\n\r\n• an upper bound of (d + 1)/2d + ε on the normalized (d − 1)-th coboundary expansion of the d-dimensional spherical building associated with GLd+2(Fq) for any ε > 0 and sufficiently large q. This disproves, in a rather strong sense, a conjecture of Lubotzky, Meshulam and Mozes."}],"isi":1,"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["510"],"doi":"10.1007/s11856-023-2521-9","year":"2023","external_id":{"isi":["001081646400010"]},"title":"Coboundary expansion, equivariant overlap, and crossing numbers of simplicial complexes"},{"file":[{"file_size":2639783,"file_name":"2023_MeasurementScienceRev_Jakubik.pdf","checksum":"b069cc10fa6a7c96b2bc9f728165f9e6","date_created":"2023-10-31T12:07:23Z","access_level":"open_access","date_updated":"2023-10-31T12:07:23Z","success":1,"relation":"main_file","content_type":"application/pdf","file_id":"14476","creator":"dernst"}],"date_created":"2023-10-22T22:01:15Z","department":[{"_id":"ChLa"}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","has_accepted_license":"1","language":[{"iso":"eng"}],"publisher":"Sciendo","scopus_import":"1","article_type":"original","date_published":"2023-08-01T00:00:00Z","month":"08","page":"175-183","file_date_updated":"2023-10-31T12:07:23Z","issue":"4","publication":"Measurement Science Review","status":"public","intvolume":" 23","type":"journal_article","day":"01","ddc":["510"],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)"},"title":"Against the flow of time with multi-output models","doi":"10.2478/msr-2023-0023","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The work was supported by the Scientific Grant Agency of the Ministry of Education of the Slovak Republic and the Slovak Academy of Sciences, projects APVV-21-0216, VEGA2-0096-21 and VEGA 2-0023-22.","oa_version":"Published Version","quality_controlled":"1","_id":"14446","publication_identifier":{"eissn":["1335-8871"]},"oa":1,"volume":23,"date_updated":"2023-10-31T12:12:47Z","article_processing_charge":"Yes","author":[{"first_name":"Jozef","full_name":"Jakubík, Jozef","last_name":"Jakubík"},{"id":"3EC6EE64-F248-11E8-B48F-1D18A9856A87","first_name":"Phuong","full_name":"Bui Thi Mai, Phuong","last_name":"Bui Thi Mai"},{"first_name":"Martina","full_name":"Chvosteková, Martina","last_name":"Chvosteková"},{"first_name":"Anna","last_name":"Krakovská","full_name":"Krakovská, Anna"}],"abstract":[{"lang":"eng","text":"Recent work has paid close attention to the first principle of Granger causality, according to which cause precedes effect. In this context, the question may arise whether the detected direction of causality also reverses after the time reversal of unidirectionally coupled data. Recently, it has been shown that for unidirectionally causally connected autoregressive (AR) processes X → Y, after time reversal of data, the opposite causal direction Y → X is indeed detected, although typically as part of the bidirectional X↔ Y link. As we argue here, the answer is different when the measured data are not from AR processes but from linked deterministic systems. When the goal is the usual forward data analysis, cross-mapping-like approaches correctly detect X → Y, while Granger causality-like approaches, which should not be used for deterministic time series, detect causal independence X → Y. The results of backward causal analysis depend on the predictability of the reversed data. Unlike AR processes, observables from deterministic dynamical systems, even complex nonlinear ones, can be predicted well forward, while backward predictions can be difficult (notably when the time reversal of a function leads to one-to-many relations). To address this problem, we propose an approach based on models that provide multiple candidate predictions for the target, combined with a loss function that consideres only the best candidate. The resulting good forward and backward predictability supports the view that unidirectionally causally linked deterministic dynamical systems X → Y can be expected to detect the same link both before and after time reversal."}],"publication_status":"published","citation":{"mla":"Jakubík, Jozef, et al. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review, vol. 23, no. 4, Sciendo, 2023, pp. 175–83, doi:10.2478/msr-2023-0023.","ama":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. Against the flow of time with multi-output models. Measurement Science Review. 2023;23(4):175-183. doi:10.2478/msr-2023-0023","ista":"Jakubík J, Phuong M, Chvosteková M, Krakovská A. 2023. Against the flow of time with multi-output models. Measurement Science Review. 23(4), 175–183.","short":"J. Jakubík, M. Phuong, M. Chvosteková, A. Krakovská, Measurement Science Review 23 (2023) 175–183.","apa":"Jakubík, J., Phuong, M., Chvosteková, M., & Krakovská, A. (2023). Against the flow of time with multi-output models. Measurement Science Review. Sciendo. https://doi.org/10.2478/msr-2023-0023","ieee":"J. Jakubík, M. Phuong, M. Chvosteková, and A. Krakovská, “Against the flow of time with multi-output models,” Measurement Science Review, vol. 23, no. 4. Sciendo, pp. 175–183, 2023.","chicago":"Jakubík, Jozef, Mary Phuong, Martina Chvosteková, and Anna Krakovská. “Against the Flow of Time with Multi-Output Models.” Measurement Science Review. Sciendo, 2023. https://doi.org/10.2478/msr-2023-0023."}},{"external_id":{"isi":["001084334300001"]},"title":"New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana","doi":"10.1007/s10725-023-01083-0","year":"2023","isi":1,"main_file_link":[{"url":"https://doi.org/10.1007/s10725-023-01083-0","open_access":"1"}],"abstract":[{"lang":"eng","text":"Auxin belongs among major phytohormones and governs multiple aspects of plant growth and development. The establishment of auxin concentration gradients, determines, among other processes, plant organ positioning and growth responses to environmental stimuli.\r\nHerein we report the synthesis of new NBD- or DNS-labelled IAA derivatives and the elucidation of their biological activity, fluorescence properties and subcellular accumulation patterns in planta. These novel compounds did not show auxin-like activity, but instead antagonized physiological auxin effects. The DNS-labelled derivatives FL5 and FL6 showed strong anti-auxin activity in roots and hypocotyls, which also occurred at the level of gene transcription as confirmed by quantitative PCR analysis. The auxin antagonism of our derivatives was further demonstrated in vitro using an SPR-based binding assay. The NBD-labelled compound FL4 with the best fluorescence properties proved to be unsuitable to study auxin accumulation patterns in planta. On the other hand, the strongest anti-auxin activity possessing compounds FL5 and FL6 could be useful to study binding mechanisms to auxin receptors and for manipulations of auxin-regulated processes."}],"author":[{"first_name":"Kristýna","last_name":"Bieleszová","full_name":"Bieleszová, Kristýna"},{"first_name":"Pavel","full_name":"Hladík, Pavel","last_name":"Hladík"},{"last_name":"Kubala","full_name":"Kubala, Martin","first_name":"Martin"},{"first_name":"Richard","full_name":"Napier, Richard","last_name":"Napier"},{"first_name":"Federica","last_name":"Brunoni","full_name":"Brunoni, Federica"},{"first_name":"Zuzana","orcid":"0000-0003-4783-1752","last_name":"Gelová","full_name":"Gelová, Zuzana","id":"0AE74790-0E0B-11E9-ABC7-1ACFE5697425"},{"first_name":"Lukas","full_name":"Fiedler, Lukas","last_name":"Fiedler","id":"7c417475-8972-11ed-ae7b-8b674ca26986"},{"first_name":"Ivan","last_name":"Kulich","full_name":"Kulich, Ivan","id":"57a1567c-8314-11eb-9063-c9ddc3451a54"},{"first_name":"Miroslav","full_name":"Strnad, Miroslav","last_name":"Strnad"},{"last_name":"Doležal","full_name":"Doležal, Karel","first_name":"Karel"},{"last_name":"Novák","full_name":"Novák, Ondřej","first_name":"Ondřej"},{"first_name":"Jiří","last_name":"Friml","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Žukauskaitė, Asta","last_name":"Žukauskaitė","first_name":"Asta"}],"publication_status":"epub_ahead","citation":{"short":"K. Bieleszová, P. Hladík, M. Kubala, R. Napier, F. Brunoni, Z. Gelová, L. Fiedler, I. Kulich, M. Strnad, K. Doležal, O. Novák, J. Friml, A. Žukauskaitė, Plant Growth Regulation (2023).","ista":"Bieleszová K, Hladík P, Kubala M, Napier R, Brunoni F, Gelová Z, Fiedler L, Kulich I, Strnad M, Doležal K, Novák O, Friml J, Žukauskaitė A. 2023. New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation.","ama":"Bieleszová K, Hladík P, Kubala M, et al. New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation. 2023. doi:10.1007/s10725-023-01083-0","mla":"Bieleszová, Kristýna, et al. “New Fluorescent Auxin Derivatives: Anti-Auxin Activity and Accumulation Patterns in Arabidopsis Thaliana.” Plant Growth Regulation, Springer Nature, 2023, doi:10.1007/s10725-023-01083-0.","chicago":"Bieleszová, Kristýna, Pavel Hladík, Martin Kubala, Richard Napier, Federica Brunoni, Zuzana Gelová, Lukas Fiedler, et al. “New Fluorescent Auxin Derivatives: Anti-Auxin Activity and Accumulation Patterns in Arabidopsis Thaliana.” Plant Growth Regulation. Springer Nature, 2023. https://doi.org/10.1007/s10725-023-01083-0.","apa":"Bieleszová, K., Hladík, P., Kubala, M., Napier, R., Brunoni, F., Gelová, Z., … Žukauskaitė, A. (2023). New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana. Plant Growth Regulation. Springer Nature. https://doi.org/10.1007/s10725-023-01083-0","ieee":"K. Bieleszová et al., “New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana,” Plant Growth Regulation. Springer Nature, 2023."},"_id":"14447","publication_identifier":{"issn":["0167-6903"],"eissn":["1573-5087"]},"acknowledgement":"The authors would like to thank Karolína Kubiasová and Iñigo Saiz-Fernández for valuable scientific discussions. Open access publishing supported by the National Technical Library in Prague. This work was supported by the Palacký University Olomouc Young Researcher Grant Competition (JG_2020_002), by the Internal Grant Agency of Palacký University Olomouc (IGA_PrF_2023_016, IGA_PrF_2023_031), by the Ministry of Education, Youth and Sports of the Czech Republic through the European Regional Development Fund-Project Plants as a tool for sustainable global development (CZ.02.1.01/0.0/0.0/16_019/0000827) and the project Support of mobility at Palacký University Olomouc II. (CZ.02.2.69/0.0/0.0/18_053/0016919). The Biacore T200 SPR instrument was provided by the WISB Research Technology Facility within the School of Life Sciences, University of Warwick.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","quality_controlled":"1","date_updated":"2023-12-13T13:08:25Z","oa":1,"article_processing_charge":"Yes (via OA deal)","publisher":"Springer Nature","scopus_import":"1","language":[{"iso":"eng"}],"month":"10","date_published":"2023-10-13T00:00:00Z","article_type":"original","date_created":"2023-10-22T22:01:15Z","department":[{"_id":"JiFr"}],"status":"public","day":"13","type":"journal_article","publication":"Plant Growth Regulation"},{"publication_identifier":{"isbn":["9798350301298"],"issn":["1063-6919"]},"_id":"14448","oa_version":"Preprint","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1,"article_processing_charge":"No","date_updated":"2023-10-31T12:01:24Z","oa":1,"volume":2023,"abstract":[{"lang":"eng","text":"We consider the problem of solving LP relaxations of MAP-MRF inference problems, and in particular the method proposed recently in [16], [35]. As a key computational subroutine, it uses a variant of the Frank-Wolfe (FW) method to minimize a smooth convex function over a combinatorial polytope. We propose an efficient implementation of this subroutine based on in-face Frank-Wolfe directions, introduced in [4] in a different context. More generally, we define an abstract data structure for a combinatorial subproblem that enables in-face FW directions, and describe its specialization for tree-structured MAP-MRF inference subproblems. Experimental results indicate that the resulting method is the current state-of-art LP solver for some classes of problems. Our code is available at pub.ist.ac.at/~vnk/papers/IN-FACE-FW.html."}],"author":[{"first_name":"Vladimir","full_name":"Kolmogorov, Vladimir","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87"}],"citation":{"ama":"Kolmogorov V. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Vol 2023. IEEE; 2023:11980-11989. doi:10.1109/CVPR52729.2023.01153","mla":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 2023, IEEE, 2023, pp. 11980–89, doi:10.1109/CVPR52729.2023.01153.","short":"V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2023, pp. 11980–11989.","ista":"Kolmogorov V. 2023. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition vol. 2023, 11980–11989.","apa":"Kolmogorov, V. (2023). Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Vol. 2023, pp. 11980–11989). Vancouver, Canada: IEEE. https://doi.org/10.1109/CVPR52729.2023.01153","ieee":"V. Kolmogorov, “Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions,” in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Vancouver, Canada, 2023, vol. 2023, pp. 11980–11989.","chicago":"Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2023:11980–89. IEEE, 2023. https://doi.org/10.1109/CVPR52729.2023.01153."},"publication_status":"published","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2010.09567","open_access":"1"}],"title":"Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions","external_id":{"arxiv":["2010.09567"]},"year":"2023","doi":"10.1109/CVPR52729.2023.01153","publication":"Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition","page":"11980-11989","intvolume":" 2023","status":"public","day":"22","type":"conference","conference":{"start_date":"2023-06-17","name":"CVPR: Conference on Computer Vision and Pattern Recognition","end_date":"2023-06-24","location":"Vancouver, Canada"},"date_created":"2023-10-22T22:01:16Z","department":[{"_id":"VlKo"}],"scopus_import":"1","publisher":"IEEE","language":[{"iso":"eng"}],"month":"08","date_published":"2023-08-22T00:00:00Z"},{"date_created":"2023-10-22T22:01:16Z","file":[{"success":1,"content_type":"application/pdf","relation":"main_file","file_id":"14471","creator":"dernst","file_name":"2023_FrontiersMicrobiology_DElia.pdf","file_size":505078,"date_created":"2023-10-30T13:38:48Z","checksum":"6c0acdd8fa111a699826957b8dff19d5","date_updated":"2023-10-30T13:38:48Z","access_level":"open_access"}],"department":[{"_id":"ScienComp"}],"has_accepted_license":"1","language":[{"iso":"eng"}],"publisher":"Frontiers","scopus_import":"1","date_published":"2023-09-25T00:00:00Z","article_type":"original","month":"09","file_date_updated":"2023-10-30T13:38:48Z","publication":"Frontiers in Microbiology","status":"public","intvolume":" 14","type":"journal_article","day":"25","ddc":["000"],"isi":1,"article_number":"1257002","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"title":"Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action","external_id":{"isi":["001080536000001"],"pmid":["37808321"]},"doi":"10.3389/fmicb.2023.1257002","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This study is based upon work from COST Action ML4Microbiome “Statistical and machine learning techniques in human microbiome studies” (CA18131), supported by COST (European Cooperation in Science and Technology), www.cost.eu. MB acknowledges support through the Metagenopolis grant ANR-11-DPBS-0001. IM-I acknowledges support by the “Miguel Servet Type II” program (CPII21/00013) of the ISCIII-Madrid (Spain), co-financed by the FEDER.\r\nThe authors are grateful to all COST Action CA18131 “Statistical and machine learning techniques in human microbiome studies” members for their contribution to the COST Action objectives, and to COST (European Cooperation in Science and Technology) for the economic support, www.cost.eu. WG2 and WG3 thank Emmanuelle Le Chatelier and Pauline Barbet (Université Paris-Saclay, INRAE, MetaGenoPolis, 78350, Jouy-en-Josas, France) for preparing the shotgun CRC benchmark dataset.","oa_version":"Published Version","quality_controlled":"1","pmid":1,"_id":"14449","publication_identifier":{"eissn":["1664-302X"]},"volume":14,"oa":1,"date_updated":"2023-12-13T13:07:21Z","article_processing_charge":"Yes","author":[{"first_name":"Domenica","last_name":"D’Elia","full_name":"D’Elia, Domenica"},{"first_name":"Jaak","last_name":"Truu","full_name":"Truu, Jaak"},{"first_name":"Leo","last_name":"Lahti","full_name":"Lahti, Leo"},{"last_name":"Berland","full_name":"Berland, Magali","first_name":"Magali"},{"full_name":"Papoutsoglou, Georgios","last_name":"Papoutsoglou","first_name":"Georgios"},{"first_name":"Michelangelo","last_name":"Ceci","full_name":"Ceci, Michelangelo"},{"full_name":"Zomer, Aldert","last_name":"Zomer","first_name":"Aldert"},{"first_name":"Marta B.","last_name":"Lopes","full_name":"Lopes, Marta B."},{"first_name":"Eliana","last_name":"Ibrahimi","full_name":"Ibrahimi, Eliana"},{"first_name":"Aleksandra","last_name":"Gruca","full_name":"Gruca, Aleksandra"},{"first_name":"Alina","full_name":"Nechyporenko, Alina","last_name":"Nechyporenko"},{"full_name":"Frohme, Marcus","last_name":"Frohme","first_name":"Marcus"},{"first_name":"Thomas","last_name":"Klammsteiner","full_name":"Klammsteiner, Thomas"},{"first_name":"Enrique Carrillo De Santa","last_name":"Pau","full_name":"Pau, Enrique Carrillo De Santa"},{"full_name":"Marcos-Zambrano, Laura Judith","last_name":"Marcos-Zambrano","first_name":"Laura Judith"},{"last_name":"Hron","full_name":"Hron, Karel","first_name":"Karel"},{"full_name":"Pio, Gianvito","last_name":"Pio","first_name":"Gianvito"},{"first_name":"Andrea","last_name":"Simeon","full_name":"Simeon, Andrea"},{"first_name":"Ramona","last_name":"Suharoschi","full_name":"Suharoschi, Ramona"},{"first_name":"Isabel","last_name":"Moreno-Indias","full_name":"Moreno-Indias, Isabel"},{"first_name":"Andriy","full_name":"Temko, Andriy","last_name":"Temko"},{"first_name":"Miroslava","full_name":"Nedyalkova, Miroslava","last_name":"Nedyalkova"},{"first_name":"Elena Simona","last_name":"Apostol","full_name":"Apostol, Elena Simona"},{"first_name":"Ciprian Octavian","last_name":"Truică","full_name":"Truică, Ciprian Octavian"},{"full_name":"Shigdel, Rajesh","last_name":"Shigdel","first_name":"Rajesh"},{"first_name":"Jasminka Hasić","last_name":"Telalović","full_name":"Telalović, Jasminka Hasić"},{"first_name":"Erik","full_name":"Bongcam-Rudloff, Erik","last_name":"Bongcam-Rudloff"},{"last_name":"Przymus","full_name":"Przymus, Piotr","first_name":"Piotr"},{"full_name":"Jordamović, Naida Babić","last_name":"Jordamović","first_name":"Naida Babić"},{"first_name":"Laurent","full_name":"Falquet, Laurent","last_name":"Falquet"},{"first_name":"Sonia","last_name":"Tarazona","full_name":"Tarazona, Sonia"},{"full_name":"Sampri, Alexia","last_name":"Sampri","first_name":"Alexia"},{"full_name":"Isola, Gaetano","last_name":"Isola","first_name":"Gaetano"},{"full_name":"Pérez-Serrano, David","last_name":"Pérez-Serrano","first_name":"David"},{"first_name":"Vladimir","full_name":"Trajkovik, Vladimir","last_name":"Trajkovik"},{"last_name":"Klucar","full_name":"Klucar, Lubos","first_name":"Lubos"},{"first_name":"Tatjana","full_name":"Loncar-Turukalo, Tatjana","last_name":"Loncar-Turukalo"},{"first_name":"Aki S.","last_name":"Havulinna","full_name":"Havulinna, Aki S."},{"id":"837b2259-bcc9-11ed-a196-ae55927bc6e2","first_name":"Christian","last_name":"Jansen","full_name":"Jansen, Christian"},{"first_name":"Randi J.","full_name":"Bertelsen, Randi J.","last_name":"Bertelsen"},{"first_name":"Marcus Joakim","last_name":"Claesson","full_name":"Claesson, Marcus Joakim"}],"abstract":[{"lang":"eng","text":"The rapid development of machine learning (ML) techniques has opened up the data-dense field of microbiome research for novel therapeutic, diagnostic, and prognostic applications targeting a wide range of disorders, which could substantially improve healthcare practices in the era of precision medicine. However, several challenges must be addressed to exploit the benefits of ML in this field fully. In particular, there is a need to establish “gold standard” protocols for conducting ML analysis experiments and improve interactions between microbiome researchers and ML experts. The Machine Learning Techniques in Human Microbiome Studies (ML4Microbiome) COST Action CA18131 is a European network established in 2019 to promote collaboration between discovery-oriented microbiome researchers and data-driven ML experts to optimize and standardize ML approaches for microbiome analysis. This perspective paper presents the key achievements of ML4Microbiome, which include identifying predictive and discriminatory ‘omics’ features, improving repeatability and comparability, developing automation procedures, and defining priority areas for the novel development of ML methods targeting the microbiome. The insights gained from ML4Microbiome will help to maximize the potential of ML in microbiome research and pave the way for new and improved healthcare practices."}],"publication_status":"published","citation":{"ieee":"D. D’Elia et al., “Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action,” Frontiers in Microbiology, vol. 14. Frontiers, 2023.","apa":"D’Elia, D., Truu, J., Lahti, L., Berland, M., Papoutsoglou, G., Ceci, M., … Claesson, M. J. (2023). Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2023.1257002","chicago":"D’Elia, Domenica, Jaak Truu, Leo Lahti, Magali Berland, Georgios Papoutsoglou, Michelangelo Ceci, Aldert Zomer, et al. “Advancing Microbiome Research with Machine Learning: Key Findings from the ML4Microbiome COST Action.” Frontiers in Microbiology. Frontiers, 2023. https://doi.org/10.3389/fmicb.2023.1257002.","ama":"D’Elia D, Truu J, Lahti L, et al. Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action. Frontiers in Microbiology. 2023;14. doi:10.3389/fmicb.2023.1257002","mla":"D’Elia, Domenica, et al. “Advancing Microbiome Research with Machine Learning: Key Findings from the ML4Microbiome COST Action.” Frontiers in Microbiology, vol. 14, 1257002, Frontiers, 2023, doi:10.3389/fmicb.2023.1257002.","short":"D. D’Elia, J. Truu, L. Lahti, M. Berland, G. Papoutsoglou, M. Ceci, A. Zomer, M.B. Lopes, E. Ibrahimi, A. Gruca, A. Nechyporenko, M. Frohme, T. Klammsteiner, E.C.D.S. Pau, L.J. Marcos-Zambrano, K. Hron, G. Pio, A. Simeon, R. Suharoschi, I. Moreno-Indias, A. Temko, M. Nedyalkova, E.S. Apostol, C.O. Truică, R. Shigdel, J.H. Telalović, E. Bongcam-Rudloff, P. Przymus, N.B. Jordamović, L. Falquet, S. Tarazona, A. Sampri, G. Isola, D. Pérez-Serrano, V. Trajkovik, L. Klucar, T. Loncar-Turukalo, A.S. Havulinna, C. Jansen, R.J. Bertelsen, M.J. Claesson, Frontiers in Microbiology 14 (2023).","ista":"D’Elia D, Truu J, Lahti L, Berland M, Papoutsoglou G, Ceci M, Zomer A, Lopes MB, Ibrahimi E, Gruca A, Nechyporenko A, Frohme M, Klammsteiner T, Pau ECDS, Marcos-Zambrano LJ, Hron K, Pio G, Simeon A, Suharoschi R, Moreno-Indias I, Temko A, Nedyalkova M, Apostol ES, Truică CO, Shigdel R, Telalović JH, Bongcam-Rudloff E, Przymus P, Jordamović NB, Falquet L, Tarazona S, Sampri A, Isola G, Pérez-Serrano D, Trajkovik V, Klucar L, Loncar-Turukalo T, Havulinna AS, Jansen C, Bertelsen RJ, Claesson MJ. 2023. Advancing microbiome research with machine learning: Key findings from the ML4Microbiome COST action. Frontiers in Microbiology. 14, 1257002."}},{"date_created":"2023-10-22T22:01:16Z","department":[{"_id":"JuFi"}],"scopus_import":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"month":"10","article_type":"original","date_published":"2023-10-05T00:00:00Z","publication":"Neural Computing and Applications","status":"public","day":"05","type":"journal_article","main_file_link":[{"url":"https://doi.org/10.1007/s00521-023-09033-7","open_access":"1"}],"title":"Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading","external_id":{"arxiv":["2203.04579"]},"doi":"10.1007/s00521-023-09033-7","year":"2023","ec_funded":1,"publication_identifier":{"eissn":["1433-3058"],"issn":["0941-0643"]},"_id":"14451","project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411"}],"quality_controlled":"1","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"Open access funding provided by Università degli Studi di Trieste within the CRUI-CARE Agreement. Funding was provided by Austrian Science Fund (Grant No. F65), Horizon 2020 (Grant No. 754411) and Österreichische Forschungsförderungsgesellschaft.","arxiv":1,"article_processing_charge":"Yes (via OA deal)","date_updated":"2023-10-31T10:58:28Z","oa":1,"abstract":[{"text":"We investigate the potential of Multi-Objective, Deep Reinforcement Learning for stock and cryptocurrency single-asset trading: in particular, we consider a Multi-Objective algorithm which generalizes the reward functions and discount factor (i.e., these components are not specified a priori, but incorporated in the learning process). Firstly, using several important assets (BTCUSD, ETHUSDT, XRPUSDT, AAPL, SPY, NIFTY50), we verify the reward generalization property of the proposed Multi-Objective algorithm, and provide preliminary statistical evidence showing increased predictive stability over the corresponding Single-Objective strategy. Secondly, we show that the Multi-Objective algorithm has a clear edge over the corresponding Single-Objective strategy when the reward mechanism is sparse (i.e., when non-null feedback is infrequent over time). Finally, we discuss the generalization properties with respect to the discount factor. The entirety of our code is provided in open-source format.","lang":"eng"}],"author":[{"id":"2CEB641C-A400-11E9-A717-D712E6697425","first_name":"Federico","orcid":"0000-0002-6269-5149","full_name":"Cornalba, Federico","last_name":"Cornalba"},{"last_name":"Disselkamp","full_name":"Disselkamp, Constantin","first_name":"Constantin"},{"full_name":"Scassola, Davide","last_name":"Scassola","first_name":"Davide"},{"first_name":"Christopher","full_name":"Helf, Christopher","last_name":"Helf"}],"citation":{"apa":"Cornalba, F., Disselkamp, C., Scassola, D., & Helf, C. (2023). Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. Springer Nature. https://doi.org/10.1007/s00521-023-09033-7","ieee":"F. Cornalba, C. Disselkamp, D. Scassola, and C. Helf, “Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading,” Neural Computing and Applications. Springer Nature, 2023.","chicago":"Cornalba, Federico, Constantin Disselkamp, Davide Scassola, and Christopher Helf. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications. Springer Nature, 2023. https://doi.org/10.1007/s00521-023-09033-7.","mla":"Cornalba, Federico, et al. “Multi-Objective Reward Generalization: Improving Performance of Deep Reinforcement Learning for Applications in Single-Asset Trading.” Neural Computing and Applications, Springer Nature, 2023, doi:10.1007/s00521-023-09033-7.","ama":"Cornalba F, Disselkamp C, Scassola D, Helf C. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications. 2023. doi:10.1007/s00521-023-09033-7","short":"F. Cornalba, C. Disselkamp, D. Scassola, C. Helf, Neural Computing and Applications (2023).","ista":"Cornalba F, Disselkamp C, Scassola D, Helf C. 2023. Multi-objective reward generalization: improving performance of Deep Reinforcement Learning for applications in single-asset trading. Neural Computing and Applications."},"publication_status":"epub_ahead"},{"has_accepted_license":"1","department":[{"_id":"NiBa"}],"date_created":"2023-10-29T23:01:15Z","file":[{"date_updated":"2023-10-30T12:57:53Z","access_level":"open_access","file_name":"2023_Genetics_Barton.pdf","file_size":1439032,"date_created":"2023-10-30T12:57:53Z","checksum":"3f65b1fbe813e2f4dbb5d2b5e891844a","content_type":"application/pdf","relation":"main_file","file_id":"14469","creator":"dernst","success":1}],"month":"10","date_published":"2023-10-01T00:00:00Z","article_type":"original","scopus_import":"1","publisher":"Oxford Academic","language":[{"iso":"eng"}],"publication":"Genetics","issue":"2","file_date_updated":"2023-10-30T12:57:53Z","day":"01","type":"journal_article","intvolume":" 225","status":"public","tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_number":"iyad133","related_material":{"record":[{"id":"12949","relation":"research_data","status":"public"}]},"ddc":["570"],"doi":"10.1093/genetics/iyad133","year":"2023","ec_funded":1,"external_id":{"arxiv":["2211.03515"]},"title":"The infinitesimal model with dominance","arxiv":1,"article_processing_charge":"Yes (in subscription journal)","date_updated":"2025-05-28T11:42:48Z","volume":225,"oa":1,"publication_identifier":{"issn":["0016-6731"],"eissn":["1943-2631"]},"_id":"14452","quality_controlled":"1","project":[{"call_identifier":"FP7","_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation","grant_number":"250152"},{"grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00","name":"Understanding the evolution of continuous genomes"}],"oa_version":"Published Version","acknowledgement":"NHB was supported in part by ERC Grants 250152 and 101055327. AV was partly supported by the chaire Modélisation Mathématique et Biodiversité of Veolia Environment—Ecole Polytechnique—Museum National d’Histoire Naturelle—Fondation X.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Barton, Nicholas H., et al. “The Infinitesimal Model with Dominance.” Genetics, vol. 225, no. 2, iyad133, Oxford Academic, 2023, doi:10.1093/genetics/iyad133.","ama":"Barton NH, Etheridge AM, Véber A. The infinitesimal model with dominance. Genetics. 2023;225(2). doi:10.1093/genetics/iyad133","ista":"Barton NH, Etheridge AM, Véber A. 2023. The infinitesimal model with dominance. Genetics. 225(2), iyad133.","short":"N.H. Barton, A.M. Etheridge, A. Véber, Genetics 225 (2023).","ieee":"N. H. Barton, A. M. Etheridge, and A. Véber, “The infinitesimal model with dominance,” Genetics, vol. 225, no. 2. Oxford Academic, 2023.","apa":"Barton, N. H., Etheridge, A. M., & Véber, A. (2023). The infinitesimal model with dominance. Genetics. Oxford Academic. https://doi.org/10.1093/genetics/iyad133","chicago":"Barton, Nicholas H, Alison M. Etheridge, and Amandine Véber. “The Infinitesimal Model with Dominance.” Genetics. Oxford Academic, 2023. https://doi.org/10.1093/genetics/iyad133."},"publication_status":"published","abstract":[{"text":"The classical infinitesimal model is a simple and robust model for the inheritance of quantitative traits. In this model, a quantitative trait is expressed as the sum of a genetic and an environmental component, and the genetic component of offspring traits within a family follows a normal distribution around the average of the parents’ trait values, and has a variance that is independent of the parental traits. In previous work, we showed that when trait values are determined by the sum of a large number of additive Mendelian factors, each of small effect, one can justify the infinitesimal model as a limit of Mendelian inheritance. In this paper, we show that this result extends to include dominance. We define the model in terms of classical quantities of quantitative genetics, before justifying it as a limit of Mendelian inheritance as the number, M, of underlying loci tends to infinity. As in the additive case, the multivariate normal distribution of trait values across the pedigree can be expressed in terms of variance components in an ancestral population and probabilities of identity by descent determined by the pedigree. Now, with just first-order dominance effects, we require two-, three-, and four-way identities. We also show that, even if we condition on parental trait values, the “shared” and “residual” components of trait values within each family will be asymptotically normally distributed as the number of loci tends to infinity, with an error of order 1/M−−√. We illustrate our results with some numerical examples.","lang":"eng"}],"author":[{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H","full_name":"Barton, Nicholas H","last_name":"Barton","orcid":"0000-0002-8548-5240"},{"first_name":"Alison M.","full_name":"Etheridge, Alison M.","last_name":"Etheridge"},{"full_name":"Véber, Amandine","last_name":"Véber","first_name":"Amandine"}]},{"project":[{"call_identifier":"H2020","_id":"629205d8-2b32-11ec-9570-e1356ff73576","name":"organization of CLoUdS, and implications of Tropical cyclones and for the Energetics of the tropics, in current and waRming climate","grant_number":"805041"}],"quality_controlled":"1","oa_version":"Published Version","acknowledgement":"The authors gratefully acknowledge funding from the European Research Council under the European Union's Horizon 2020 research and innovation program (Project CLUSTER, Grant Agreement No. 805041). This work is also supported by a PhD fellowship funded by the Ecole Normale Supérieure de Paris-Saclay. Authors are also grateful to Benjamin Filider, who was of great help and support in the development of ideas. Eventually, we would like to thank Martin Singh, John M. Peters and an anonymous reviewer for their valuable comments and suggestions, which greatly improved the quality of the manuscript.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1942-2466"]},"_id":"14453","article_processing_charge":"Yes","volume":15,"date_updated":"2023-12-13T13:06:40Z","oa":1,"author":[{"first_name":"Sophie","last_name":"Abramian","full_name":"Abramian, Sophie"},{"id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","first_name":"Caroline J","orcid":"0000-0001-5836-5350","full_name":"Muller, Caroline J","last_name":"Muller"},{"first_name":"Camille","full_name":"Risi, Camille","last_name":"Risi"}],"abstract":[{"text":"Squall lines are substantially influenced by the interaction of low-level shear with cold pools associated with convective downdrafts. Beyond an optimal shear amplitude, squall lines tend to orient themselves at an angle with respect to the low-level shear. While the mechanisms behind squall line orientation seem to be increasingly well understood, uncertainties remain on the implications of this orientation. Roca and Fiolleau (2020, https://doi.org/10.1038/s43247-020-00015-4) show that long lived mesoscale convective systems, including squall lines, are disproportionately involved in rainfall extremes in the tropics. This article investigates the influence of the interaction between low-level shear and squall line outflow on squall line generated precipitation extrema in the tropics. Using a cloud resolving model, simulated squall lines in radiative convective equilibrium amid a shear-dominated regime (super optimal), a balanced regime (optimal), and an outflow dominated regime (suboptimal). Our results show that precipitation extremes in squall lines are 40% more intense in the case of optimal shear and remain 30% superior in the superoptimal regime relative to a disorganized case. With a theoretical scaling of precipitation extremes (C. Muller & Takayabu, 2020, https://doi.org/10.1088/1748-9326/ab7130), we show that the condensation rates control the amplification of precipitation extremes in tropical squall lines, mainly due to its change in vertical mass flux (dynamic component). The reduction of dilution by entrainment explains half of this change, consistent with Mulholland et al. (2021, https://doi.org/10.1175/jas-d-20-0299.1). The other half is explained by increased cloud-base velocity intensity in optimal and superoptimal squall lines.","lang":"eng"}],"citation":{"short":"S. Abramian, C.J. Muller, C. Risi, Journal of Advances in Modeling Earth Systems 15 (2023).","ista":"Abramian S, Muller CJ, Risi C. 2023. Extreme precipitation in tropical squall lines. Journal of Advances in Modeling Earth Systems. 15(10), e2022MS003477.","ama":"Abramian S, Muller CJ, Risi C. Extreme precipitation in tropical squall lines. Journal of Advances in Modeling Earth Systems. 2023;15(10). doi:10.1029/2022MS003477","mla":"Abramian, Sophie, et al. “Extreme Precipitation in Tropical Squall Lines.” Journal of Advances in Modeling Earth Systems, vol. 15, no. 10, e2022MS003477, Wiley, 2023, doi:10.1029/2022MS003477.","chicago":"Abramian, Sophie, Caroline J Muller, and Camille Risi. “Extreme Precipitation in Tropical Squall Lines.” Journal of Advances in Modeling Earth Systems. Wiley, 2023. https://doi.org/10.1029/2022MS003477.","apa":"Abramian, S., Muller, C. J., & Risi, C. (2023). Extreme precipitation in tropical squall lines. Journal of Advances in Modeling Earth Systems. Wiley. https://doi.org/10.1029/2022MS003477","ieee":"S. Abramian, C. J. Muller, and C. Risi, “Extreme precipitation in tropical squall lines,” Journal of Advances in Modeling Earth Systems, vol. 15, no. 10. Wiley, 2023."},"publication_status":"published","ddc":["550"],"article_number":"e2022MS003477","isi":1,"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"title":"Extreme precipitation in tropical squall lines","external_id":{"isi":["001084933600001"]},"ec_funded":1,"doi":"10.1029/2022MS003477","year":"2023","file_date_updated":"2023-10-30T13:31:42Z","publication":"Journal of Advances in Modeling Earth Systems","issue":"10","status":"public","intvolume":" 15","type":"journal_article","day":"01","date_created":"2023-10-29T23:01:15Z","file":[{"relation":"main_file","content_type":"application/pdf","creator":"dernst","file_id":"14470","success":1,"access_level":"open_access","date_updated":"2023-10-30T13:31:42Z","file_size":1975210,"file_name":"2023_JAMES_Abramian.pdf","checksum":"43e6a1a35b663843c7d3f8d0caaca1a5","date_created":"2023-10-30T13:31:42Z"}],"department":[{"_id":"CaMu"}],"has_accepted_license":"1","language":[{"iso":"eng"}],"scopus_import":"1","publisher":"Wiley","date_published":"2023-10-01T00:00:00Z","article_type":"original","month":"10"},{"citation":{"chicago":"Henzinger, Thomas A, Konstantin Kueffner, and Kaushik Mallik. “Monitoring Algorithmic Fairness under Partial Observations.” In 23rd International Conference on Runtime Verification, 14245:291–311. Springer Nature, 2023. https://doi.org/10.1007/978-3-031-44267-4_15.","apa":"Henzinger, T. A., Kueffner, K., & Mallik, K. (2023). Monitoring algorithmic fairness under partial observations. In 23rd International Conference on Runtime Verification (Vol. 14245, pp. 291–311). Thessaloniki, Greece: Springer Nature. https://doi.org/10.1007/978-3-031-44267-4_15","ieee":"T. A. Henzinger, K. Kueffner, and K. Mallik, “Monitoring algorithmic fairness under partial observations,” in 23rd International Conference on Runtime Verification, Thessaloniki, Greece, 2023, vol. 14245, pp. 291–311.","ista":"Henzinger TA, Kueffner K, Mallik K. 2023. Monitoring algorithmic fairness under partial observations. 23rd International Conference on Runtime Verification. RV: Conference on Runtime Verification, LNCS, vol. 14245, 291–311.","short":"T.A. Henzinger, K. Kueffner, K. Mallik, in:, 23rd International Conference on Runtime Verification, Springer Nature, 2023, pp. 291–311.","ama":"Henzinger TA, Kueffner K, Mallik K. Monitoring algorithmic fairness under partial observations. In: 23rd International Conference on Runtime Verification. Vol 14245. Springer Nature; 2023:291-311. doi:10.1007/978-3-031-44267-4_15","mla":"Henzinger, Thomas A., et al. “Monitoring Algorithmic Fairness under Partial Observations.” 23rd International Conference on Runtime Verification, vol. 14245, Springer Nature, 2023, pp. 291–311, doi:10.1007/978-3-031-44267-4_15."},"publication_status":"published","author":[{"full_name":"Henzinger, Thomas A","last_name":"Henzinger","orcid":"0000-0002-2985-7724","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"id":"8121a2d0-dc85-11ea-9058-af578f3b4515","first_name":"Konstantin","last_name":"Kueffner","full_name":"Kueffner, Konstantin","orcid":"0000-0001-8974-2542"},{"id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598","first_name":"Kaushik","full_name":"Mallik, Kaushik","last_name":"Mallik","orcid":"0000-0001-9864-7475"}],"abstract":[{"text":"As AI and machine-learned software are used increasingly for making decisions that affect humans, it is imperative that they remain fair and unbiased in their decisions. To complement design-time bias mitigation measures, runtime verification techniques have been introduced recently to monitor the algorithmic fairness of deployed systems. Previous monitoring techniques assume full observability of the states of the (unknown) monitored system. Moreover, they can monitor only fairness properties that are specified as arithmetic expressions over the probabilities of different events. In this work, we extend fairness monitoring to systems modeled as partially observed Markov chains (POMC), and to specifications containing arithmetic expressions over the expected values of numerical functions on event sequences. The only assumptions we make are that the underlying POMC is aperiodic and starts in the stationary distribution, with a bound on its mixing time being known. These assumptions enable us to estimate a given property for the entire distribution of possible executions of the monitored POMC, by observing only a single execution. Our monitors observe a long run of the system and, after each new observation, output updated PAC-estimates of how fair or biased the system is. The monitors are computationally lightweight and, using a prototype implementation, we demonstrate their effectiveness on several real-world examples.","lang":"eng"}],"article_processing_charge":"No","volume":14245,"oa":1,"date_updated":"2023-10-31T11:48:20Z","arxiv":1,"oa_version":"Preprint","project":[{"grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020"}],"quality_controlled":"1","acknowledgement":"This work is supported by the European Research Council under Grant No.: ERC-2020-AdG 101020093.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0302-9743"],"isbn":["9783031442667"],"eissn":["1611-3349"]},"_id":"14454","ec_funded":1,"doi":"10.1007/978-3-031-44267-4_15","year":"2023","external_id":{"arxiv":["2308.00341"]},"title":"Monitoring algorithmic fairness under partial observations","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2308.00341","open_access":"1"}],"alternative_title":["LNCS"],"type":"conference","day":"01","status":"public","intvolume":" 14245","page":"291-311","publication":"23rd International Conference on Runtime Verification","date_published":"2023-10-01T00:00:00Z","month":"10","language":[{"iso":"eng"}],"scopus_import":"1","publisher":"Springer Nature","department":[{"_id":"ToHe"}],"date_created":"2023-10-29T23:01:15Z","conference":{"start_date":"2023-10-03","name":"RV: Conference on Runtime Verification","end_date":"2023-10-06","location":"Thessaloniki, Greece"}},{"publication_status":"published","citation":{"mla":"Narzisi, Antonio, et al. “Tempering Expectations: Considerations on the Current State of Stem Cells Therapy for Autism Treatment.” Frontiers in Psychiatry, vol. 14, 1287879, Frontiers, 2023, doi:10.3389/fpsyt.2023.1287879.","ama":"Narzisi A, Halladay A, Masi G, Novarino G, Lord C. Tempering expectations: Considerations on the current state of stem cells therapy for autism treatment. Frontiers in Psychiatry. 2023;14. doi:10.3389/fpsyt.2023.1287879","ista":"Narzisi A, Halladay A, Masi G, Novarino G, Lord C. 2023. Tempering expectations: Considerations on the current state of stem cells therapy for autism treatment. Frontiers in Psychiatry. 14, 1287879.","short":"A. Narzisi, A. Halladay, G. Masi, G. Novarino, C. Lord, Frontiers in Psychiatry 14 (2023).","ieee":"A. Narzisi, A. Halladay, G. Masi, G. Novarino, and C. Lord, “Tempering expectations: Considerations on the current state of stem cells therapy for autism treatment,” Frontiers in Psychiatry, vol. 14. Frontiers, 2023.","apa":"Narzisi, A., Halladay, A., Masi, G., Novarino, G., & Lord, C. (2023). Tempering expectations: Considerations on the current state of stem cells therapy for autism treatment. Frontiers in Psychiatry. Frontiers. https://doi.org/10.3389/fpsyt.2023.1287879","chicago":"Narzisi, Antonio, Alycia Halladay, Gabriele Masi, Gaia Novarino, and Catherine Lord. “Tempering Expectations: Considerations on the Current State of Stem Cells Therapy for Autism Treatment.” Frontiers in Psychiatry. Frontiers, 2023. https://doi.org/10.3389/fpsyt.2023.1287879."},"author":[{"last_name":"Narzisi","full_name":"Narzisi, Antonio","first_name":"Antonio"},{"first_name":"Alycia","last_name":"Halladay","full_name":"Halladay, Alycia"},{"first_name":"Gabriele","full_name":"Masi, Gabriele","last_name":"Masi"},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","full_name":"Novarino, Gaia","last_name":"Novarino","orcid":"0000-0002-7673-7178"},{"full_name":"Lord, Catherine","last_name":"Lord","first_name":"Catherine"}],"volume":14,"date_updated":"2023-12-13T13:06:07Z","oa":1,"article_processing_charge":"Yes","acknowledgement":"The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This work has been partially supported by Italian Ministry of Health Grant RC2023 (and the 5 × 1,000 voluntary contributions). The authors thank the children and their families with whom they work daily.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","oa_version":"Published Version","_id":"14455","pmid":1,"publication_identifier":{"eissn":["1664-0640"]},"year":"2023","doi":"10.3389/fpsyt.2023.1287879","title":"Tempering expectations: Considerations on the current state of stem cells therapy for autism treatment","external_id":{"isi":["001084841700001"],"pmid":["37854442"]},"article_number":"1287879","isi":1,"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["570"],"type":"journal_article","day":"03","status":"public","intvolume":" 14","file_date_updated":"2023-10-30T12:48:40Z","publication":"Frontiers in Psychiatry","date_published":"2023-10-03T00:00:00Z","article_type":"letter_note","month":"10","language":[{"iso":"eng"}],"publisher":"Frontiers","scopus_import":"1","department":[{"_id":"GaNo"}],"has_accepted_license":"1","date_created":"2023-10-29T23:01:16Z","file":[{"creator":"dernst","file_id":"14468","relation":"main_file","content_type":"application/pdf","success":1,"access_level":"open_access","date_updated":"2023-10-30T12:48:40Z","checksum":"0a76373e9a4c0fc199f80380de257e86","date_created":"2023-10-30T12:48:40Z","file_size":147878,"file_name":"2023_FrontiersPsychiatry_Narzisi.pdf"}]}]