---
_id: '14770'
abstract:
- lang: eng
  text: We developed LIONESS, a technology that leverages improvements to optical
    super-resolution microscopy and prior information on sample structure via machine
    learning to overcome the limitations (in 3D-resolution, signal-to-noise ratio
    and light exposure) of optical microscopy of living biological specimens. LIONESS
    enables dense reconstruction of living brain tissue and morphodynamics visualization
    at the nanoscale.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
citation:
  ama: Danzl JG, Velicky P. LIONESS enables 4D nanoscale reconstruction of living
    brain tissue. <i>Nature Methods</i>. 2023;20(8):1141-1142. doi:<a href="https://doi.org/10.1038/s41592-023-01937-5">10.1038/s41592-023-01937-5</a>
  apa: Danzl, J. G., &#38; Velicky, P. (2023). LIONESS enables 4D nanoscale reconstruction
    of living brain tissue. <i>Nature Methods</i>. Springer Nature. <a href="https://doi.org/10.1038/s41592-023-01937-5">https://doi.org/10.1038/s41592-023-01937-5</a>
  chicago: Danzl, Johann G, and Philipp Velicky. “LIONESS Enables 4D Nanoscale Reconstruction
    of Living Brain Tissue.” <i>Nature Methods</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s41592-023-01937-5">https://doi.org/10.1038/s41592-023-01937-5</a>.
  ieee: J. G. Danzl and P. Velicky, “LIONESS enables 4D nanoscale reconstruction of
    living brain tissue,” <i>Nature Methods</i>, vol. 20, no. 8. Springer Nature,
    pp. 1141–1142, 2023.
  ista: Danzl JG, Velicky P. 2023. LIONESS enables 4D nanoscale reconstruction of
    living brain tissue. Nature Methods. 20(8), 1141–1142.
  mla: Danzl, Johann G., and Philipp Velicky. “LIONESS Enables 4D Nanoscale Reconstruction
    of Living Brain Tissue.” <i>Nature Methods</i>, vol. 20, no. 8, Springer Nature,
    2023, pp. 1141–42, doi:<a href="https://doi.org/10.1038/s41592-023-01937-5">10.1038/s41592-023-01937-5</a>.
  short: J.G. Danzl, P. Velicky, Nature Methods 20 (2023) 1141–1142.
date_created: 2024-01-10T08:07:15Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2024-01-10T08:37:48Z
day: '01'
department:
- _id: JoDa
doi: 10.1038/s41592-023-01937-5
external_id:
  isi:
  - '001025621500002'
intvolume: '        20'
isi: 1
issue: '8'
keyword:
- Cell Biology
- Molecular Biology
- Biochemistry
- Biotechnology
language:
- iso: eng
month: '08'
oa_version: None
page: 1141-1142
publication: Nature Methods
publication_identifier:
  eissn:
  - 1548-7105
  issn:
  - 1548-7091
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '13267'
    relation: extended_version
    status: public
scopus_import: '1'
status: public
title: LIONESS enables 4D nanoscale reconstruction of living brain tissue
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 20
year: '2023'
...
---
_id: '14771'
abstract:
- lang: eng
  text: Pruning—that is, setting a significant subset of the parameters of a neural
    network to zero—is one of the most popular methods of model compression. Yet,
    several recent works have raised the issue that pruning may induce or exacerbate
    bias in the output of the compressed model. Despite existing evidence for this
    phenomenon, the relationship between neural network pruning and induced bias is
    not well-understood. In this work, we systematically investigate and characterize
    this phenomenon in Convolutional Neural Networks for computer vision. First, we
    show that it is in fact possible to obtain highly-sparse models, e.g. with less
    than 10% remaining weights, which do not decrease in accuracy nor substantially
    increase in bias when compared to dense models. At the same time, we also find
    that, at higher sparsities, pruned models exhibit higher uncertainty in their
    outputs, as well as increased correlations, which we directly link to increased
    bias. We propose easy-to-use criteria which, based only on the uncompressed model,
    establish whether bias will increase with pruning, and identify the samples most
    susceptible to biased predictions post-compression. Our code can be found at https://github.com/IST-DASLab/pruned-vision-model-bias.
acknowledgement: The authors would like to sincerely thank Sara Hooker for her feedback
  during the development of this work. EI was supported in part by the FWF DK VGSCO,
  grant agreement number W1260-N35. AP and DA acknowledge generous ERC support, via
  Starting Grant 805223 ScaleML.
article_processing_charge: No
arxiv: 1
author:
- first_name: Eugenia B
  full_name: Iofinova, Eugenia B
  id: f9a17499-f6e0-11ea-865d-fdf9a3f77117
  last_name: Iofinova
  orcid: 0000-0002-7778-3221
- first_name: Elena-Alexandra
  full_name: Peste, Elena-Alexandra
  id: 32D78294-F248-11E8-B48F-1D18A9856A87
  last_name: Peste
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Iofinova EB, Peste E-A, Alistarh D-A. Bias in pruned vision models: In-depth
    analysis and countermeasures. In: <i>2023 IEEE/CVF Conference on Computer Vision
    and Pattern Recognition</i>. IEEE; 2023:24364-24373. doi:<a href="https://doi.org/10.1109/cvpr52729.2023.02334">10.1109/cvpr52729.2023.02334</a>'
  apa: 'Iofinova, E. B., Peste, E.-A., &#38; Alistarh, D.-A. (2023). Bias in pruned
    vision models: In-depth analysis and countermeasures. In <i>2023 IEEE/CVF Conference
    on Computer Vision and Pattern Recognition</i> (pp. 24364–24373). Vancouver, BC,
    Canada: IEEE. <a href="https://doi.org/10.1109/cvpr52729.2023.02334">https://doi.org/10.1109/cvpr52729.2023.02334</a>'
  chicago: 'Iofinova, Eugenia B, Elena-Alexandra Peste, and Dan-Adrian Alistarh. “Bias
    in Pruned Vision Models: In-Depth Analysis and Countermeasures.” In <i>2023 IEEE/CVF
    Conference on Computer Vision and Pattern Recognition</i>, 24364–73. IEEE, 2023.
    <a href="https://doi.org/10.1109/cvpr52729.2023.02334">https://doi.org/10.1109/cvpr52729.2023.02334</a>.'
  ieee: 'E. B. Iofinova, E.-A. Peste, and D.-A. Alistarh, “Bias in pruned vision models:
    In-depth analysis and countermeasures,” in <i>2023 IEEE/CVF Conference on Computer
    Vision and Pattern Recognition</i>, Vancouver, BC, Canada, 2023, pp. 24364–24373.'
  ista: 'Iofinova EB, Peste E-A, Alistarh D-A. 2023. Bias in pruned vision models:
    In-depth analysis and countermeasures. 2023 IEEE/CVF Conference on Computer Vision
    and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition,
    24364–24373.'
  mla: 'Iofinova, Eugenia B., et al. “Bias in Pruned Vision Models: In-Depth Analysis
    and Countermeasures.” <i>2023 IEEE/CVF Conference on Computer Vision and Pattern
    Recognition</i>, IEEE, 2023, pp. 24364–73, doi:<a href="https://doi.org/10.1109/cvpr52729.2023.02334">10.1109/cvpr52729.2023.02334</a>.'
  short: E.B. Iofinova, E.-A. Peste, D.-A. Alistarh, in:, 2023 IEEE/CVF Conference
    on Computer Vision and Pattern Recognition, IEEE, 2023, pp. 24364–24373.
conference:
  end_date: 2023-06-24
  location: Vancouver, BC, Canada
  name: 'CVPR: Conference on Computer Vision and Pattern Recognition'
  start_date: 2023-06-17
date_created: 2024-01-10T08:42:40Z
date_published: 2023-08-22T00:00:00Z
date_updated: 2024-01-10T08:59:26Z
day: '22'
department:
- _id: DaAl
- _id: ChLa
doi: 10.1109/cvpr52729.2023.02334
ec_funded: 1
external_id:
  arxiv:
  - '2304.12622'
  isi:
  - '001062531308068'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2304.12622
month: '08'
oa: 1
oa_version: Preprint
page: 24364-24373
project:
- _id: 9B9290DE-BA93-11EA-9121-9846C619BF3A
  grant_number: ' W1260-N35'
  name: Vienna Graduate School on Computational Optimization
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition
publication_identifier:
  eisbn:
  - '9798350301298'
  eissn:
  - 2575-7075
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/IST-DASLab/pruned-vision-model-bias
status: public
title: 'Bias in pruned vision models: In-depth analysis and countermeasures'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14772'
abstract:
- lang: eng
  text: "Many coupled evolution equations can be described via 2×2-block operator
    matrices of the form A=[ \r\nA\tB\r\nC\tD\r\n ] in a product space X=X1×X2 with
    possibly unbounded entries. Here, the case of diagonally dominant block operator
    matrices is considered, that is, the case where the full operator A can be seen
    as a relatively bounded perturbation of its diagonal part with D(A)=D(A)×D(D)
    though with possibly large relative bound. For such operators the properties of
    sectoriality, R-sectoriality and the boundedness of the H∞-calculus are studied,
    and for these properties perturbation results for possibly large but structured
    perturbations are derived. Thereby, the time dependent parabolic problem associated
    with A can be analyzed in maximal Lpt\r\n-regularity spaces, and this is applied
    to a wide range of problems such as different theories for liquid crystals, an
    artificial Stokes system, strongly damped wave and plate equations, and a Keller-Segel
    model."
acknowledgement: "We would like to thank Tim Binz, Emiel Lorist and Mark Veraar for
  valuable discussions. We also thank the anonymous referees for their helpful comments
  and suggestions, and for the very accurate reading of the manuscript.\r\nThe first
  author has been supported partially by the Nachwuchsring – Network for the promotion
  of young scientists – at TU Kaiserslautern. Both authors have been supported by
  MathApp – Mathematics Applied to Real-World Problems - part of the Research Initiative
  of the Federal State of Rhineland-Palatinate, Germany."
article_number: '110146'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Antonio
  full_name: Agresti, Antonio
  id: 673cd0cc-9b9a-11eb-b144-88f30e1fbb72
  last_name: Agresti
  orcid: 0000-0002-9573-2962
- first_name: Amru
  full_name: Hussein, Amru
  last_name: Hussein
citation:
  ama: Agresti A, Hussein A. Maximal Lp-regularity and H∞-calculus for block operator
    matrices and applications. <i>Journal of Functional Analysis</i>. 2023;285(11).
    doi:<a href="https://doi.org/10.1016/j.jfa.2023.110146">10.1016/j.jfa.2023.110146</a>
  apa: Agresti, A., &#38; Hussein, A. (2023). Maximal Lp-regularity and H∞-calculus
    for block operator matrices and applications. <i>Journal of Functional Analysis</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.jfa.2023.110146">https://doi.org/10.1016/j.jfa.2023.110146</a>
  chicago: Agresti, Antonio, and Amru Hussein. “Maximal Lp-Regularity and H∞-Calculus
    for Block Operator Matrices and Applications.” <i>Journal of Functional Analysis</i>.
    Elsevier, 2023. <a href="https://doi.org/10.1016/j.jfa.2023.110146">https://doi.org/10.1016/j.jfa.2023.110146</a>.
  ieee: A. Agresti and A. Hussein, “Maximal Lp-regularity and H∞-calculus for block
    operator matrices and applications,” <i>Journal of Functional Analysis</i>, vol.
    285, no. 11. Elsevier, 2023.
  ista: Agresti A, Hussein A. 2023. Maximal Lp-regularity and H∞-calculus for block
    operator matrices and applications. Journal of Functional Analysis. 285(11), 110146.
  mla: Agresti, Antonio, and Amru Hussein. “Maximal Lp-Regularity and H∞-Calculus
    for Block Operator Matrices and Applications.” <i>Journal of Functional Analysis</i>,
    vol. 285, no. 11, 110146, Elsevier, 2023, doi:<a href="https://doi.org/10.1016/j.jfa.2023.110146">10.1016/j.jfa.2023.110146</a>.
  short: A. Agresti, A. Hussein, Journal of Functional Analysis 285 (2023).
date_created: 2024-01-10T09:15:18Z
date_published: 2023-12-01T00:00:00Z
date_updated: 2024-01-10T11:24:56Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1016/j.jfa.2023.110146
external_id:
  arxiv:
  - '2108.01962'
  isi:
  - '001081809000001'
file:
- access_level: open_access
  checksum: eda98ca2aa73da91bd074baed34c2b3c
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-10T11:23:57Z
  date_updated: 2024-01-10T11:23:57Z
  file_id: '14789'
  file_name: 2023_JourFunctionalAnalysis_Agresti.pdf
  file_size: 1120592
  relation: main_file
  success: 1
file_date_updated: 2024-01-10T11:23:57Z
has_accepted_license: '1'
intvolume: '       285'
isi: 1
issue: '11'
keyword:
- Analysis
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Journal of Functional Analysis
publication_identifier:
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Maximal Lp-regularity and H∞-calculus for block operator matrices and applications
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 285
year: '2023'
...
---
_id: '14773'
abstract:
- lang: eng
  text: Through a combination of idealized simulations and real-world data, researchers
    are uncovering how internal feedbacks and large-scale motions influence cloud
    dynamics.
article_number: '28'
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Sophie
  full_name: Abramian, Sophie
  last_name: Abramian
citation:
  ama: Muller CJ, Abramian S. The cloud dynamics of convective storm systems. <i>Physics
    Today</i>. 2023;76(5). doi:<a href="https://doi.org/10.1063/pt.3.5234">10.1063/pt.3.5234</a>
  apa: Muller, C. J., &#38; Abramian, S. (2023). The cloud dynamics of convective
    storm systems. <i>Physics Today</i>. AIP Publishing. <a href="https://doi.org/10.1063/pt.3.5234">https://doi.org/10.1063/pt.3.5234</a>
  chicago: Muller, Caroline J, and Sophie Abramian. “The Cloud Dynamics of Convective
    Storm Systems.” <i>Physics Today</i>. AIP Publishing, 2023. <a href="https://doi.org/10.1063/pt.3.5234">https://doi.org/10.1063/pt.3.5234</a>.
  ieee: C. J. Muller and S. Abramian, “The cloud dynamics of convective storm systems,”
    <i>Physics Today</i>, vol. 76, no. 5. AIP Publishing, 2023.
  ista: Muller CJ, Abramian S. 2023. The cloud dynamics of convective storm systems.
    Physics Today. 76(5), 28.
  mla: Muller, Caroline J., and Sophie Abramian. “The Cloud Dynamics of Convective
    Storm Systems.” <i>Physics Today</i>, vol. 76, no. 5, 28, AIP Publishing, 2023,
    doi:<a href="https://doi.org/10.1063/pt.3.5234">10.1063/pt.3.5234</a>.
  short: C.J. Muller, S. Abramian, Physics Today 76 (2023).
date_created: 2024-01-10T09:18:04Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2024-01-10T12:38:02Z
day: '01'
department:
- _id: CaMu
doi: 10.1063/pt.3.5234
external_id:
  isi:
  - '000984516100007'
intvolume: '        76'
isi: 1
issue: '5'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.lmd.ens.fr/muller/Pubs/2023-MullerAbramianPhysToday.pdf
month: '05'
oa: 1
oa_version: Published Version
publication: Physics Today
publication_identifier:
  eissn:
  - 1945-0699
  issn:
  - 0031-9228
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
status: public
title: The cloud dynamics of convective storm systems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2023'
...
---
_id: '14774'
abstract:
- lang: eng
  text: Morphogen gradients impart positional information to cells in a homogenous
    tissue field. Fgf8a, a highly conserved growth factor, has been proposed to act
    as a morphogen during zebrafish gastrulation. However, technical limitations have
    so far prevented direct visualization of the endogenous Fgf8a gradient and confirmation
    of its morphogenic activity. Here, we monitor Fgf8a propagation in the developing
    neural plate using a CRISPR/Cas9-mediated EGFP knock-in at the endogenous fgf8a
    locus. By combining sensitive imaging with single-molecule fluorescence correlation
    spectroscopy, we demonstrate that Fgf8a, which is produced at the embryonic margin,
    propagates by diffusion through the extracellular space and forms a graded distribution
    towards the animal pole. Overlaying the Fgf8a gradient curve with expression profiles
    of its downstream targets determines the precise input-output relationship of
    Fgf8a-mediated patterning. Manipulation of the extracellular Fgf8a levels alters
    the signaling outcome, thus establishing Fgf8a as a bona fide morphogen during
    zebrafish gastrulation. Furthermore, by hindering Fgf8a diffusion, we demonstrate
    that extracellular diffusion of the protein from the source is crucial for it
    to achieve its morphogenic potential.
acknowledgement: "We thank members of the Brand lab, as well as Justina Stark (Ivo
  Sbalzarini group, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden,
  Germany) for project-related discussions; Darren Gilmour (University of Zurich),
  Karuna Sampath (University of Warwick) and Gokul Kesavan (Vowels Lifesciences Private
  Limited, Bangalore) for comments on the manuscript; personnel of the CMCB technology
  platform, TU Dresden for imaging and image analysis-related support; and Maurizio
  Abbate (Technical support, Arivis) for help with image analysis. We are also grateful
  to Stapornwongkul and Briscoe for commenting on a preprint version of our work (Stapornwongkul
  and Briscoe, 2022).\r\nThis work was supported by the Deutsche Forschungsgemeinschaft
  (BR 1746/6-2, BR 1746/11-1 and BR 1746/3 to M.B.), by a Cluster of Excellence ‘Physics
  of Life’ seed grant and by institutional funds from Technische Universitat Dresden
  (to M.B.). Open Access funding provided by Technische Universitat Dresden. Deposited
  in PMC for immediate release."
article_number: dev201559
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Rohit K
  full_name: Harish, Rohit K
  id: 1bae78aa-ee0e-11ec-9b76-bc42990f409d
  last_name: Harish
- first_name: Mansi
  full_name: Gupta, Mansi
  last_name: Gupta
- first_name: Daniela
  full_name: Zöller, Daniela
  last_name: Zöller
- first_name: Hella
  full_name: Hartmann, Hella
  last_name: Hartmann
- first_name: Ali
  full_name: Gheisari, Ali
  last_name: Gheisari
- first_name: Anja
  full_name: Machate, Anja
  last_name: Machate
- first_name: Stefan
  full_name: Hans, Stefan
  last_name: Hans
- first_name: Michael
  full_name: Brand, Michael
  last_name: Brand
citation:
  ama: Harish RK, Gupta M, Zöller D, et al. Real-time monitoring of an endogenous
    Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation.
    <i>Development</i>. 2023;150(19). doi:<a href="https://doi.org/10.1242/dev.201559">10.1242/dev.201559</a>
  apa: Harish, R. K., Gupta, M., Zöller, D., Hartmann, H., Gheisari, A., Machate,
    A., … Brand, M. (2023). Real-time monitoring of an endogenous Fgf8a gradient attests
    to its role as a morphogen during zebrafish gastrulation. <i>Development</i>.
    The Company of Biologists. <a href="https://doi.org/10.1242/dev.201559">https://doi.org/10.1242/dev.201559</a>
  chicago: Harish, Rohit K, Mansi Gupta, Daniela Zöller, Hella Hartmann, Ali Gheisari,
    Anja Machate, Stefan Hans, and Michael Brand. “Real-Time Monitoring of an Endogenous
    Fgf8a Gradient Attests to Its Role as a Morphogen during Zebrafish Gastrulation.”
    <i>Development</i>. The Company of Biologists, 2023. <a href="https://doi.org/10.1242/dev.201559">https://doi.org/10.1242/dev.201559</a>.
  ieee: R. K. Harish <i>et al.</i>, “Real-time monitoring of an endogenous Fgf8a gradient
    attests to its role as a morphogen during zebrafish gastrulation,” <i>Development</i>,
    vol. 150, no. 19. The Company of Biologists, 2023.
  ista: Harish RK, Gupta M, Zöller D, Hartmann H, Gheisari A, Machate A, Hans S, Brand
    M. 2023. Real-time monitoring of an endogenous Fgf8a gradient attests to its role
    as a morphogen during zebrafish gastrulation. Development. 150(19), dev201559.
  mla: Harish, Rohit K., et al. “Real-Time Monitoring of an Endogenous Fgf8a Gradient
    Attests to Its Role as a Morphogen during Zebrafish Gastrulation.” <i>Development</i>,
    vol. 150, no. 19, dev201559, The Company of Biologists, 2023, doi:<a href="https://doi.org/10.1242/dev.201559">10.1242/dev.201559</a>.
  short: R.K. Harish, M. Gupta, D. Zöller, H. Hartmann, A. Gheisari, A. Machate, S.
    Hans, M. Brand, Development 150 (2023).
date_created: 2024-01-10T09:18:54Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2024-01-10T12:45:25Z
day: '01'
ddc:
- '570'
department:
- _id: AnKi
doi: 10.1242/dev.201559
external_id:
  isi:
  - '001097449100002'
  pmid:
  - '37665167'
file:
- access_level: open_access
  checksum: 2d6f52dc33260a9b2352b8f28374ba5f
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-10T12:41:13Z
  date_updated: 2024-01-10T12:41:13Z
  file_id: '14790'
  file_name: 2023_Development_Harish.pdf
  file_size: 12836306
  relation: main_file
  success: 1
file_date_updated: 2024-01-10T12:41:13Z
has_accepted_license: '1'
intvolume: '       150'
isi: 1
issue: '19'
keyword:
- Developmental Biology
- Molecular Biology
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Development
publication_identifier:
  eissn:
  - 1477-9129
  issn:
  - 0950-1991
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
status: public
title: Real-time monitoring of an endogenous Fgf8a gradient attests to its role as
  a morphogen during zebrafish gastrulation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 150
year: '2023'
...
---
_id: '14775'
abstract:
- lang: eng
  text: We establish a quantitative version of the Tracy–Widom law for the largest
    eigenvalue of high-dimensional sample covariance matrices. To be precise, we show
    that the fluctuations of the largest eigenvalue of a sample covariance matrix
    X∗X converge to its Tracy–Widom limit at a rate nearly N−1/3, where X is an M×N
    random matrix whose entries are independent real or complex random variables,
    assuming that both M and N tend to infinity at a constant rate. This result improves
    the previous estimate N−2/9 obtained by Wang (2019). Our proof relies on a Green
    function comparison method (Adv. Math. 229 (2012) 1435–1515) using iterative cumulant
    expansions, the local laws for the Green function and asymptotic properties of
    the correlation kernel of the white Wishart ensemble.
acknowledgement: K. Schnelli was supported by the Swedish Research Council Grants
  VR-2017-05195, and the Knut and Alice Wallenberg Foundation. Y. Xu was supported
  by the Swedish Research Council Grant VR-2017-05195 and the ERC Advanced Grant “RMTBeyond”
  No. 101020331.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Kevin
  full_name: Schnelli, Kevin
  id: 434AD0AE-F248-11E8-B48F-1D18A9856A87
  last_name: Schnelli
  orcid: 0000-0003-0954-3231
- first_name: Yuanyuan
  full_name: Xu, Yuanyuan
  id: 7902bdb1-a2a4-11eb-a164-c9216f71aea3
  last_name: Xu
  orcid: 0000-0003-1559-1205
citation:
  ama: Schnelli K, Xu Y. Convergence rate to the Tracy–Widom laws for the largest
    eigenvalue of sample covariance matrices. <i>The Annals of Applied Probability</i>.
    2023;33(1):677-725. doi:<a href="https://doi.org/10.1214/22-aap1826">10.1214/22-aap1826</a>
  apa: Schnelli, K., &#38; Xu, Y. (2023). Convergence rate to the Tracy–Widom laws
    for the largest eigenvalue of sample covariance matrices. <i>The Annals of Applied
    Probability</i>. Institute of Mathematical Statistics. <a href="https://doi.org/10.1214/22-aap1826">https://doi.org/10.1214/22-aap1826</a>
  chicago: Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom
    Laws for the Largest Eigenvalue of Sample Covariance Matrices.” <i>The Annals
    of Applied Probability</i>. Institute of Mathematical Statistics, 2023. <a href="https://doi.org/10.1214/22-aap1826">https://doi.org/10.1214/22-aap1826</a>.
  ieee: K. Schnelli and Y. Xu, “Convergence rate to the Tracy–Widom laws for the largest
    eigenvalue of sample covariance matrices,” <i>The Annals of Applied Probability</i>,
    vol. 33, no. 1. Institute of Mathematical Statistics, pp. 677–725, 2023.
  ista: Schnelli K, Xu Y. 2023. Convergence rate to the Tracy–Widom laws for the largest
    eigenvalue of sample covariance matrices. The Annals of Applied Probability. 33(1),
    677–725.
  mla: Schnelli, Kevin, and Yuanyuan Xu. “Convergence Rate to the Tracy–Widom Laws
    for the Largest Eigenvalue of Sample Covariance Matrices.” <i>The Annals of Applied
    Probability</i>, vol. 33, no. 1, Institute of Mathematical Statistics, 2023, pp.
    677–725, doi:<a href="https://doi.org/10.1214/22-aap1826">10.1214/22-aap1826</a>.
  short: K. Schnelli, Y. Xu, The Annals of Applied Probability 33 (2023) 677–725.
date_created: 2024-01-10T09:23:31Z
date_published: 2023-02-01T00:00:00Z
date_updated: 2024-01-10T13:31:46Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/22-aap1826
ec_funded: 1
external_id:
  arxiv:
  - '2108.02728'
  isi:
  - '000946432400021'
intvolume: '        33'
isi: 1
issue: '1'
keyword:
- Statistics
- Probability and Uncertainty
- Statistics and Probability
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2108.02728
month: '02'
oa: 1
oa_version: Preprint
page: 677-725
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: The Annals of Applied Probability
publication_identifier:
  issn:
  - 1050-5164
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Convergence rate to the Tracy–Widom laws for the largest eigenvalue of sample
  covariance matrices
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2023'
...
---
_id: '14776'
abstract:
- lang: eng
  text: Soluble chaperones residing in the endoplasmic reticulum (ER) play vitally
    important roles in folding and quality control of newly synthesized proteins that
    transiently pass through the ER en route to their final destinations. These soluble
    residents of the ER are themselves endowed with an ER retrieval signal that enables
    the cell to bring the escaped residents back from the Golgi. Here, by using purified
    proteins, we showed that Nicotiana tabacum phytaspase, a plant aspartate-specific
    protease, introduces two breaks at the C-terminus of the N. tabacum ER resident
    calreticulin-3. These cleavages resulted in removal of either a dipeptide or a
    hexapeptide from the C-terminus of calreticulin-3 encompassing part or all of
    the ER retrieval signal. Consistently, expression of the calreticulin-3 derivative
    mimicking the phytaspase cleavage product in Nicotiana benthamiana cells demonstrated
    loss of the ER accumulation of the protein. Notably, upon its escape from the
    ER, calreticulin-3 was further processed by an unknown protease(s) to generate
    the free N-terminal (N) domain of calreticulin-3, which was ultimately secreted
    into the apoplast. Our study thus identified a specific proteolytic enzyme capable
    of precise detachment of the ER retrieval signal from a plant ER resident protein,
    with implications for the further fate of the escaped resident.
acknowledgement: "We thank C.U.T. Hellen for critically reading the manuscript. The
  MALDI MS facility and CLSM became available to us in the framework of Moscow State
  University Development Programs PNG 5.13 and PNR 5.13.\r\nThis work was funded by
  the Russian Science Foundation, grant numbers 19-14-00010 and 22-14-00071."
article_number: '16527'
article_processing_charge: Yes
article_type: original
author:
- first_name: Anastasiia
  full_name: Teplova, Anastasiia
  id: e3736151-106c-11ec-b916-c2558e2762c6
  last_name: Teplova
- first_name: Artemii A.
  full_name: Pigidanov, Artemii A.
  last_name: Pigidanov
- first_name: Marina V.
  full_name: Serebryakova, Marina V.
  last_name: Serebryakova
- first_name: Sergei A.
  full_name: Golyshev, Sergei A.
  last_name: Golyshev
- first_name: Raisa A.
  full_name: Galiullina, Raisa A.
  last_name: Galiullina
- first_name: Nina V.
  full_name: Chichkova, Nina V.
  last_name: Chichkova
- first_name: Andrey B.
  full_name: Vartapetian, Andrey B.
  last_name: Vartapetian
citation:
  ama: Teplova A, Pigidanov AA, Serebryakova MV, et al. Phytaspase Is capable of detaching
    the endoplasmic reticulum retrieval signal from tobacco calreticulin-3. <i>International
    Journal of Molecular Sciences</i>. 2023;24(22). doi:<a href="https://doi.org/10.3390/ijms242216527">10.3390/ijms242216527</a>
  apa: Teplova, A., Pigidanov, A. A., Serebryakova, M. V., Golyshev, S. A., Galiullina,
    R. A., Chichkova, N. V., &#38; Vartapetian, A. B. (2023). Phytaspase Is capable
    of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3.
    <i>International Journal of Molecular Sciences</i>. MDPI. <a href="https://doi.org/10.3390/ijms242216527">https://doi.org/10.3390/ijms242216527</a>
  chicago: Teplova, Anastasiia, Artemii A. Pigidanov, Marina V. Serebryakova, Sergei
    A. Golyshev, Raisa A. Galiullina, Nina V. Chichkova, and Andrey B. Vartapetian.
    “Phytaspase Is Capable of Detaching the Endoplasmic Reticulum Retrieval Signal
    from Tobacco Calreticulin-3.” <i>International Journal of Molecular Sciences</i>.
    MDPI, 2023. <a href="https://doi.org/10.3390/ijms242216527">https://doi.org/10.3390/ijms242216527</a>.
  ieee: A. Teplova <i>et al.</i>, “Phytaspase Is capable of detaching the endoplasmic
    reticulum retrieval signal from tobacco calreticulin-3,” <i>International Journal
    of Molecular Sciences</i>, vol. 24, no. 22. MDPI, 2023.
  ista: Teplova A, Pigidanov AA, Serebryakova MV, Golyshev SA, Galiullina RA, Chichkova
    NV, Vartapetian AB. 2023. Phytaspase Is capable of detaching the endoplasmic reticulum
    retrieval signal from tobacco calreticulin-3. International Journal of Molecular
    Sciences. 24(22), 16527.
  mla: Teplova, Anastasiia, et al. “Phytaspase Is Capable of Detaching the Endoplasmic
    Reticulum Retrieval Signal from Tobacco Calreticulin-3.” <i>International Journal
    of Molecular Sciences</i>, vol. 24, no. 22, 16527, MDPI, 2023, doi:<a href="https://doi.org/10.3390/ijms242216527">10.3390/ijms242216527</a>.
  short: A. Teplova, A.A. Pigidanov, M.V. Serebryakova, S.A. Golyshev, R.A. Galiullina,
    N.V. Chichkova, A.B. Vartapetian, International Journal of Molecular Sciences
    24 (2023).
date_created: 2024-01-10T09:24:35Z
date_published: 2023-11-01T00:00:00Z
date_updated: 2024-01-10T13:41:10Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.3390/ijms242216527
external_id:
  isi:
  - '001113792600001'
  pmid:
  - '38003717'
file:
- access_level: open_access
  checksum: 4df7d206ba022b7f54eff1f0aec1659a
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-10T13:39:42Z
  date_updated: 2024-01-10T13:39:42Z
  file_id: '14791'
  file_name: 2023_IJMS_Teplova.pdf
  file_size: 2637784
  relation: main_file
  success: 1
file_date_updated: 2024-01-10T13:39:42Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '22'
keyword:
- Inorganic Chemistry
- Organic Chemistry
- Physical and Theoretical Chemistry
- Computer Science Applications
- Spectroscopy
- Molecular Biology
- General Medicine
- Catalysis
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: International Journal of Molecular Sciences
publication_identifier:
  issn:
  - 1422-0067
publication_status: published
publisher: MDPI
quality_controlled: '1'
status: public
title: Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal
  from tobacco calreticulin-3
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2023'
...
---
_id: '14777'
abstract:
- lang: eng
  text: The effects of the partial V-substitution for Ag on the thermoelectric (TE)
    properties are investigated for a flexible semiconducting compound Ag2S0.55Se0.45.
    Density functional theory calculations predict that such a partial V-substitution
    constructively modifies the electronic structure near the bottom of the conduction
    band to improve the TE performance. The synthesized Ag1.97V0.03S0.55Se0.45 is
    found to possess a TE dimensionless figure-of-merit (ZT) of 0.71 at 350 K with
    maintaining its flexible nature. This ZT value is relatively high in comparison
    with those reported for flexible TE materials below 360 K. The increase in the
    ZT value is caused by the enhanced absolute value of the Seebeck coefficient with
    less significant variation in electrical resistivity. The high ZT value with the
    flexible nature naturally allows us to employ the Ag1.97V0.03S0.55Se0.45 as a
    component of flexible TE generators.
acknowledgement: This work received financial support partially from Japan Science
  and Technology Agency (JST) CREST Grant No. JPMJCR18I2, Japan. The powder-XRD experiments
  were conducted at BL5S2 of Aichi Synchrotron Radiation Center, Aichi Science & Technology
  Foundation, Aichi, Japan (Proposal No. 202301057).
article_number: '125206'
article_processing_charge: Yes
article_type: original
author:
- first_name: Kosuke
  full_name: Sato, Kosuke
  last_name: Sato
- first_name: Saurabh
  full_name: Singh, Saurabh
  id: 12d625da-9cb3-11ed-9667-af09d37d3f0a
  last_name: Singh
  orcid: 0000-0003-2209-5269
- first_name: Itsuki
  full_name: Yamazaki, Itsuki
  last_name: Yamazaki
- first_name: Keisuke
  full_name: Hirata, Keisuke
  last_name: Hirata
- first_name: Artoni Kevin R.
  full_name: Ang, Artoni Kevin R.
  last_name: Ang
- first_name: Masaharu
  full_name: Matsunami, Masaharu
  last_name: Matsunami
- first_name: Tsunehiro
  full_name: Takeuchi, Tsunehiro
  last_name: Takeuchi
citation:
  ama: Sato K, Singh S, Yamazaki I, et al. Improvement of thermoelectric performance
    of flexible compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag.
    <i>AIP Advances</i>. 2023;13(12). doi:<a href="https://doi.org/10.1063/5.0171888">10.1063/5.0171888</a>
  apa: Sato, K., Singh, S., Yamazaki, I., Hirata, K., Ang, A. K. R., Matsunami, M.,
    &#38; Takeuchi, T. (2023). Improvement of thermoelectric performance of flexible
    compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag. <i>AIP Advances</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0171888">https://doi.org/10.1063/5.0171888</a>
  chicago: Sato, Kosuke, Saurabh Singh, Itsuki Yamazaki, Keisuke Hirata, Artoni Kevin
    R. Ang, Masaharu Matsunami, and Tsunehiro Takeuchi. “Improvement of Thermoelectric
    Performance of Flexible Compound Ag2S0.55Se0.45 by Means of Partial V-Substitution
    for Ag.” <i>AIP Advances</i>. AIP Publishing, 2023. <a href="https://doi.org/10.1063/5.0171888">https://doi.org/10.1063/5.0171888</a>.
  ieee: K. Sato <i>et al.</i>, “Improvement of thermoelectric performance of flexible
    compound Ag2S0.55Se0.45 by means of partial V-substitution for Ag,” <i>AIP Advances</i>,
    vol. 13, no. 12. AIP Publishing, 2023.
  ista: Sato K, Singh S, Yamazaki I, Hirata K, Ang AKR, Matsunami M, Takeuchi T. 2023.
    Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45
    by means of partial V-substitution for Ag. AIP Advances. 13(12), 125206.
  mla: Sato, Kosuke, et al. “Improvement of Thermoelectric Performance of Flexible
    Compound Ag2S0.55Se0.45 by Means of Partial V-Substitution for Ag.” <i>AIP Advances</i>,
    vol. 13, no. 12, 125206, AIP Publishing, 2023, doi:<a href="https://doi.org/10.1063/5.0171888">10.1063/5.0171888</a>.
  short: K. Sato, S. Singh, I. Yamazaki, K. Hirata, A.K.R. Ang, M. Matsunami, T. Takeuchi,
    AIP Advances 13 (2023).
date_created: 2024-01-10T09:26:08Z
date_published: 2023-12-01T00:00:00Z
date_updated: 2024-01-10T13:49:09Z
day: '01'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1063/5.0171888
external_id:
  isi:
  - '001114917200005'
file:
- access_level: open_access
  checksum: a7098388b8ff822b47f5ddd37ed3bdbc
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-10T13:47:31Z
  date_updated: 2024-01-10T13:47:31Z
  file_id: '14792'
  file_name: 2023_AIPAdvances_Sato.pdf
  file_size: 9676071
  relation: main_file
  success: 1
file_date_updated: 2024-01-10T13:47:31Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
issue: '12'
keyword:
- General Physics and Astronomy
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: AIP Advances
publication_identifier:
  eissn:
  - 2158-3226
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
status: public
title: Improvement of thermoelectric performance of flexible compound Ag2S0.55Se0.45
  by means of partial V-substitution for Ag
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2023'
...
---
_id: '14778'
abstract:
- lang: eng
  text: 'We consider the almost-sure (a.s.) termination problem for probabilistic
    programs, which are a stochastic extension of classical imperative programs. Lexicographic
    ranking functions provide a sound and practical approach for termination of non-probabilistic
    programs, and their extension to probabilistic programs is achieved via lexicographic
    ranking supermartingales (LexRSMs). However, LexRSMs introduced in the previous
    work have a limitation that impedes their automation: all of their components
    have to be non-negative in all reachable states. This might result in a LexRSM
    not existing even for simple terminating programs. Our contributions are twofold.
    First, we introduce a generalization of LexRSMs that allows for some components
    to be negative. This standard feature of non-probabilistic termination proofs
    was hitherto not known to be sound in the probabilistic setting, as the soundness
    proof requires a careful analysis of the underlying stochastic process. Second,
    we present polynomial-time algorithms using our generalized LexRSMs for proving
    a.s. termination in broad classes of linear-arithmetic programs.'
acknowledgement: This research was partially supported by the ERC CoG (grant no. 863818;
  ForM-SMArt), the Czech Science Foundation (grant no. GA21-24711S), and the European
  Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie
  Grant Agreement No. 665385.
article_number: '11'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Ehsan
  full_name: Kafshdar Goharshady, Ehsan
  last_name: Kafshdar Goharshady
- first_name: Petr
  full_name: Novotný, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotný
- first_name: Jiří
  full_name: Zárevúcky, Jiří
  last_name: Zárevúcky
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
citation:
  ama: Chatterjee K, Kafshdar Goharshady E, Novotný P, Zárevúcky J, Zikelic D. On
    lexicographic proof rules for probabilistic termination. <i>Formal Aspects of
    Computing</i>. 2023;35(2). doi:<a href="https://doi.org/10.1145/3585391">10.1145/3585391</a>
  apa: Chatterjee, K., Kafshdar Goharshady, E., Novotný, P., Zárevúcky, J., &#38;
    Zikelic, D. (2023). On lexicographic proof rules for probabilistic termination.
    <i>Formal Aspects of Computing</i>. Association for Computing Machinery. <a href="https://doi.org/10.1145/3585391">https://doi.org/10.1145/3585391</a>
  chicago: Chatterjee, Krishnendu, Ehsan Kafshdar Goharshady, Petr Novotný, Jiří Zárevúcky,
    and Dorde Zikelic. “On Lexicographic Proof Rules for Probabilistic Termination.”
    <i>Formal Aspects of Computing</i>. Association for Computing Machinery, 2023.
    <a href="https://doi.org/10.1145/3585391">https://doi.org/10.1145/3585391</a>.
  ieee: K. Chatterjee, E. Kafshdar Goharshady, P. Novotný, J. Zárevúcky, and D. Zikelic,
    “On lexicographic proof rules for probabilistic termination,” <i>Formal Aspects
    of Computing</i>, vol. 35, no. 2. Association for Computing Machinery, 2023.
  ista: Chatterjee K, Kafshdar Goharshady E, Novotný P, Zárevúcky J, Zikelic D. 2023.
    On lexicographic proof rules for probabilistic termination. Formal Aspects of
    Computing. 35(2), 11.
  mla: Chatterjee, Krishnendu, et al. “On Lexicographic Proof Rules for Probabilistic
    Termination.” <i>Formal Aspects of Computing</i>, vol. 35, no. 2, 11, Association
    for Computing Machinery, 2023, doi:<a href="https://doi.org/10.1145/3585391">10.1145/3585391</a>.
  short: K. Chatterjee, E. Kafshdar Goharshady, P. Novotný, J. Zárevúcky, D. Zikelic,
    Formal Aspects of Computing 35 (2023).
date_created: 2024-01-10T09:27:43Z
date_published: 2023-06-23T00:00:00Z
date_updated: 2025-07-14T09:10:10Z
day: '23'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1145/3585391
ec_funded: 1
external_id:
  arxiv:
  - '2108.02188'
file:
- access_level: open_access
  checksum: 3bb133eeb27ec01649a9a36445d952d9
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T08:11:24Z
  date_updated: 2024-01-16T08:11:24Z
  file_id: '14804'
  file_name: 2023_FormalAspectsComputing_Chatterjee.pdf
  file_size: 502522
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T08:11:24Z
has_accepted_license: '1'
intvolume: '        35'
issue: '2'
keyword:
- Theoretical Computer Science
- Software
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: Formal Aspects of Computing
publication_identifier:
  eissn:
  - 1433-299X
  issn:
  - 0934-5043
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
  record:
  - id: '10414'
    relation: earlier_version
    status: public
status: public
title: On lexicographic proof rules for probabilistic termination
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2023'
...
---
_id: '14779'
abstract:
- lang: eng
  text: The presence of a developed boundary layer decouples a glacier's response
    from ambient conditions, suggesting that sensitivity to climate change is increased
    by glacier retreat. To test this hypothesis, we explore six years of distributed
    meteorological data on a small Swiss glacier in the period 2001–2022. Large glacier
    fragmentation has occurred since 2001 (−35% area change up to 2022) coinciding
    with notable frontal retreat, an observed switch from down‐glacier katabatic to
    up‐glacier valley winds and an increased sensitivity (ratio) of on‐glacier to
    off‐glacier temperature. As the glacier ceases to develop density‐driven katabatic
    winds, sensible heat fluxes on the glacier are increasingly determined by the
    conditions occurring outside the boundary layer of the glacier, sealing the glacier's
    demise as the climate continues to warm and experience an increased frequency
    of extreme summers.
acknowledgement: This work was funded by the EU Horizon 2020 Marie Skłodowska-Curie
  Actions Grant 101026058. The authors acknowl-edge the dedicated collection of field
  data by many parties since 2001, including those acknowledged for the cited works
  on Arolla Glacier. The authors would like to thank Fabienne Meier, Alice Zaugg,
  Raphael Willi, Maria Grundmann, and Marta Corrà for assistance in the field for
  the summers of 2021 and 2022. Off-glacier data provided by Grand Dixence SA (Arolla)
  and MeteoSwiss are kindly acknowledged. Simone Fatichi is thanked for the provision
  and support in the use of the Tethys-Chloris model. We thank Editor Mathieu Morlighem
  and two anonymous reviewers whose comments have helped to improve the quality of
  the manuscript.
article_number: e2023GL103043
article_processing_charge: No
article_type: original
author:
- first_name: Thomas E.
  full_name: Shaw, Thomas E.
  last_name: Shaw
- first_name: Pascal
  full_name: Buri, Pascal
  last_name: Buri
- first_name: Michael
  full_name: McCarthy, Michael
  last_name: McCarthy
- first_name: Evan S.
  full_name: Miles, Evan S.
  last_name: Miles
- first_name: Álvaro
  full_name: Ayala, Álvaro
  last_name: Ayala
- first_name: Francesca
  full_name: Pellicciotti, Francesca
  id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
  last_name: Pellicciotti
  orcid: 0000-0002-5554-8087
citation:
  ama: Shaw TE, Buri P, McCarthy M, Miles ES, Ayala Á, Pellicciotti F. The decaying
    near‐surface boundary layer of a retreating alpine glacier. <i>Geophysical Research
    Letters</i>. 2023;50(11). doi:<a href="https://doi.org/10.1029/2023gl103043">10.1029/2023gl103043</a>
  apa: Shaw, T. E., Buri, P., McCarthy, M., Miles, E. S., Ayala, Á., &#38; Pellicciotti,
    F. (2023). The decaying near‐surface boundary layer of a retreating alpine glacier.
    <i>Geophysical Research Letters</i>. American Geophysical Union. <a href="https://doi.org/10.1029/2023gl103043">https://doi.org/10.1029/2023gl103043</a>
  chicago: Shaw, Thomas E., Pascal Buri, Michael McCarthy, Evan S. Miles, Álvaro Ayala,
    and Francesca Pellicciotti. “The Decaying Near‐surface Boundary Layer of a Retreating
    Alpine Glacier.” <i>Geophysical Research Letters</i>. American Geophysical Union,
    2023. <a href="https://doi.org/10.1029/2023gl103043">https://doi.org/10.1029/2023gl103043</a>.
  ieee: T. E. Shaw, P. Buri, M. McCarthy, E. S. Miles, Á. Ayala, and F. Pellicciotti,
    “The decaying near‐surface boundary layer of a retreating alpine glacier,” <i>Geophysical
    Research Letters</i>, vol. 50, no. 11. American Geophysical Union, 2023.
  ista: Shaw TE, Buri P, McCarthy M, Miles ES, Ayala Á, Pellicciotti F. 2023. The
    decaying near‐surface boundary layer of a retreating alpine glacier. Geophysical
    Research Letters. 50(11), e2023GL103043.
  mla: Shaw, Thomas E., et al. “The Decaying Near‐surface Boundary Layer of a Retreating
    Alpine Glacier.” <i>Geophysical Research Letters</i>, vol. 50, no. 11, e2023GL103043,
    American Geophysical Union, 2023, doi:<a href="https://doi.org/10.1029/2023gl103043">10.1029/2023gl103043</a>.
  short: T.E. Shaw, P. Buri, M. McCarthy, E.S. Miles, Á. Ayala, F. Pellicciotti, Geophysical
    Research Letters 50 (2023).
date_created: 2024-01-10T09:28:34Z
date_published: 2023-06-16T00:00:00Z
date_updated: 2024-01-16T08:42:36Z
day: '16'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1029/2023gl103043
external_id:
  isi:
  - '000999436400001'
file:
- access_level: open_access
  checksum: 391a3005c95340a0ae129ce4fbdf2bae
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T08:35:02Z
  date_updated: 2024-01-16T08:35:02Z
  file_id: '14805'
  file_name: 2023_GeophysicalResearchLetter_Shaw.pdf
  file_size: 2529327
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T08:35:02Z
has_accepted_license: '1'
intvolume: '        50'
isi: 1
issue: '11'
keyword:
- General Earth and Planetary Sciences
- Geophysics
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Geophysical Research Letters
publication_identifier:
  eissn:
  - 1944-8007
  issn:
  - 0094-8276
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
status: public
title: The decaying near‐surface boundary layer of a retreating alpine glacier
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2023'
...
---
_id: '14780'
abstract:
- lang: eng
  text: In this paper, we study the eigenvalues and eigenvectors of the spiked invariant
    multiplicative models when the randomness is from Haar matrices. We establish
    the limits of the outlier eigenvalues λˆi and the generalized components (⟨v,uˆi⟩
    for any deterministic vector v) of the outlier eigenvectors uˆi with optimal convergence
    rates. Moreover, we prove that the non-outlier eigenvalues stick with those of
    the unspiked matrices and the non-outlier eigenvectors are delocalized. The results
    also hold near the so-called BBP transition and for degenerate spikes. On one
    hand, our results can be regarded as a refinement of the counterparts of [12]
    under additional regularity conditions. On the other hand, they can be viewed
    as an analog of [34] by replacing the random matrix with i.i.d. entries with Haar
    random matrix.
acknowledgement: The authors would like to thank the editor, the associated editor
  and two anonymous referees for their many critical suggestions which have significantly
  improved the paper. The authors are also grateful to Zhigang Bao and Ji Oon Lee
  for many helpful discussions. The first author also wants to thank Hari Bercovici
  for many useful comments. The first author is partially supported by National Science
  Foundation DMS-2113489 and the second author is supported by ERC Advanced Grant
  “RMTBeyond” No. 101020331.
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Xiucai
  full_name: Ding, Xiucai
  last_name: Ding
- first_name: Hong Chang
  full_name: Ji, Hong Chang
  id: dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d
  last_name: Ji
citation:
  ama: Ding X, Ji HC. Spiked multiplicative random matrices and principal components.
    <i>Stochastic Processes and their Applications</i>. 2023;163:25-60. doi:<a href="https://doi.org/10.1016/j.spa.2023.05.009">10.1016/j.spa.2023.05.009</a>
  apa: Ding, X., &#38; Ji, H. C. (2023). Spiked multiplicative random matrices and
    principal components. <i>Stochastic Processes and Their Applications</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.spa.2023.05.009">https://doi.org/10.1016/j.spa.2023.05.009</a>
  chicago: Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices
    and Principal Components.” <i>Stochastic Processes and Their Applications</i>.
    Elsevier, 2023. <a href="https://doi.org/10.1016/j.spa.2023.05.009">https://doi.org/10.1016/j.spa.2023.05.009</a>.
  ieee: X. Ding and H. C. Ji, “Spiked multiplicative random matrices and principal
    components,” <i>Stochastic Processes and their Applications</i>, vol. 163. Elsevier,
    pp. 25–60, 2023.
  ista: Ding X, Ji HC. 2023. Spiked multiplicative random matrices and principal components.
    Stochastic Processes and their Applications. 163, 25–60.
  mla: Ding, Xiucai, and Hong Chang Ji. “Spiked Multiplicative Random Matrices and
    Principal Components.” <i>Stochastic Processes and Their Applications</i>, vol.
    163, Elsevier, 2023, pp. 25–60, doi:<a href="https://doi.org/10.1016/j.spa.2023.05.009">10.1016/j.spa.2023.05.009</a>.
  short: X. Ding, H.C. Ji, Stochastic Processes and Their Applications 163 (2023)
    25–60.
date_created: 2024-01-10T09:29:25Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2024-01-16T08:49:51Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1016/j.spa.2023.05.009
ec_funded: 1
external_id:
  arxiv:
  - '2302.13502'
  isi:
  - '001113615900001'
file:
- access_level: open_access
  checksum: 46a708b0cd5569a73d0f3d6c3e0a44dc
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T08:47:31Z
  date_updated: 2024-01-16T08:47:31Z
  file_id: '14806'
  file_name: 2023_StochasticProcAppl_Ding.pdf
  file_size: 1870349
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T08:47:31Z
has_accepted_license: '1'
intvolume: '       163'
isi: 1
keyword:
- Applied Mathematics
- Modeling and Simulation
- Statistics and Probability
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 25-60
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: Stochastic Processes and their Applications
publication_identifier:
  eissn:
  - 1879-209X
  issn:
  - 0304-4149
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Spiked multiplicative random matrices and principal components
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 163
year: '2023'
...
---
_id: '14781'
abstract:
- lang: eng
  text: Germ granules, condensates of phase-separated RNA and protein, are organelles
    that are essential for germline development in different organisms. The patterning
    of the granules and their relevance for germ cell fate are not fully understood.
    Combining three-dimensional in vivo structural and functional analyses, we study
    the dynamic spatial organization of molecules within zebrafish germ granules.
    We find that the localization of RNA molecules to the periphery of the granules,
    where ribosomes are localized, depends on translational activity at this location.
    In addition, we find that the vertebrate-specific Dead end (Dnd1) protein is essential
    for nanos3 RNA localization at the condensates’ periphery. Accordingly, in the
    absence of Dnd1, or when translation is inhibited, nanos3 RNA translocates into
    the granule interior, away from the ribosomes, a process that is correlated with
    the loss of germ cell fate. These findings highlight the relevance of sub-granule
    compartmentalization for post-transcriptional control and its importance for preserving
    germ cell totipotency.
acknowledgement: We thank Celeste Brennecka for editing and Michal Reichman-Fried
  for critical comments on the manuscript. We thank Ursula Jordan, Esther Messerschmidt,
  and Ines Sandbote for technical assistance. This work was supported by funding from
  the University of Münster (K.J.W., K.T., E.R., A.G., T.G.-T., J.S., and M.G.), the
  Max Planck Institute for Molecular Biomedicine (D.Z.), the German Research Foundation
  grant CRU 326 (P2) RA863/12-2 (E.R.), Baylor University (K.H. and D.R.), and the
  National Institutes of Health grant R35 GM 134910 (D.R.). We thank the referees
  for insightful comments that helped improve the manuscript.
article_processing_charge: No
article_type: original
author:
- first_name: Kim Joana
  full_name: Westerich, Kim Joana
  last_name: Westerich
- first_name: Katsiaryna
  full_name: Tarbashevich, Katsiaryna
  last_name: Tarbashevich
- first_name: Jan
  full_name: Schick, Jan
  last_name: Schick
- first_name: Antra
  full_name: Gupta, Antra
  last_name: Gupta
- first_name: Mingzhao
  full_name: Zhu, Mingzhao
  last_name: Zhu
- first_name: Kenneth
  full_name: Hull, Kenneth
  last_name: Hull
- first_name: Daniel
  full_name: Romo, Daniel
  last_name: Romo
- first_name: Dagmar
  full_name: Zeuschner, Dagmar
  last_name: Zeuschner
- first_name: Mohammad
  full_name: Goudarzi, Mohammad
  id: 3384113A-F248-11E8-B48F-1D18A9856A87
  last_name: Goudarzi
- first_name: Theresa
  full_name: Gross-Thebing, Theresa
  last_name: Gross-Thebing
- first_name: Erez
  full_name: Raz, Erez
  last_name: Raz
citation:
  ama: Westerich KJ, Tarbashevich K, Schick J, et al. Spatial organization and function
    of RNA molecules within phase-separated condensates in zebrafish are controlled
    by Dnd1. <i>Developmental Cell</i>. 2023;58(17):1578-1592.e5. doi:<a href="https://doi.org/10.1016/j.devcel.2023.06.009">10.1016/j.devcel.2023.06.009</a>
  apa: Westerich, K. J., Tarbashevich, K., Schick, J., Gupta, A., Zhu, M., Hull, K.,
    … Raz, E. (2023). Spatial organization and function of RNA molecules within phase-separated
    condensates in zebrafish are controlled by Dnd1. <i>Developmental Cell</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.devcel.2023.06.009">https://doi.org/10.1016/j.devcel.2023.06.009</a>
  chicago: Westerich, Kim Joana, Katsiaryna Tarbashevich, Jan Schick, Antra Gupta,
    Mingzhao Zhu, Kenneth Hull, Daniel Romo, et al. “Spatial Organization and Function
    of RNA Molecules within Phase-Separated Condensates in Zebrafish Are Controlled
    by Dnd1.” <i>Developmental Cell</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.devcel.2023.06.009">https://doi.org/10.1016/j.devcel.2023.06.009</a>.
  ieee: K. J. Westerich <i>et al.</i>, “Spatial organization and function of RNA molecules
    within phase-separated condensates in zebrafish are controlled by Dnd1,” <i>Developmental
    Cell</i>, vol. 58, no. 17. Elsevier, p. 1578–1592.e5, 2023.
  ista: Westerich KJ, Tarbashevich K, Schick J, Gupta A, Zhu M, Hull K, Romo D, Zeuschner
    D, Goudarzi M, Gross-Thebing T, Raz E. 2023. Spatial organization and function
    of RNA molecules within phase-separated condensates in zebrafish are controlled
    by Dnd1. Developmental Cell. 58(17), 1578–1592.e5.
  mla: Westerich, Kim Joana, et al. “Spatial Organization and Function of RNA Molecules
    within Phase-Separated Condensates in Zebrafish Are Controlled by Dnd1.” <i>Developmental
    Cell</i>, vol. 58, no. 17, Elsevier, 2023, p. 1578–1592.e5, doi:<a href="https://doi.org/10.1016/j.devcel.2023.06.009">10.1016/j.devcel.2023.06.009</a>.
  short: K.J. Westerich, K. Tarbashevich, J. Schick, A. Gupta, M. Zhu, K. Hull, D.
    Romo, D. Zeuschner, M. Goudarzi, T. Gross-Thebing, E. Raz, Developmental Cell
    58 (2023) 1578–1592.e5.
date_created: 2024-01-10T09:41:21Z
date_published: 2023-09-11T00:00:00Z
date_updated: 2024-01-16T08:56:36Z
day: '11'
department:
- _id: Bio
doi: 10.1016/j.devcel.2023.06.009
external_id:
  pmid:
  - '37463577'
intvolume: '        58'
issue: '17'
keyword:
- Developmental Biology
- Cell Biology
- General Biochemistry
- Genetics and Molecular Biology
- Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.biorxiv.org/content/10.1101/2023.07.09.548244
month: '09'
oa: 1
oa_version: Preprint
page: 1578-1592.e5
pmid: 1
publication: Developmental Cell
publication_identifier:
  issn:
  - 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Spatial organization and function of RNA molecules within phase-separated condensates
  in zebrafish are controlled by Dnd1
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 58
year: '2023'
...
---
_id: '14782'
abstract:
- lang: eng
  text: The actin cortex is a complex cytoskeletal machinery that drives and responds
    to changes in cell shape. It must generate or adapt to plasma membrane curvature
    to facilitate diverse functions such as cell division, migration, and phagocytosis.
    Due to the complex molecular makeup of the actin cortex, it remains unclear whether
    actin networks are inherently able to sense and generate membrane curvature, or
    whether they rely on their diverse binding partners to accomplish this. Here,
    we show that curvature sensing is an inherent capability of branched actin networks
    nucleated by Arp2/3 and VCA. We develop a robust method to encapsulate actin inside
    giant unilamellar vesicles (GUVs) and assemble an actin cortex at the inner surface
    of the GUV membrane. We show that actin forms a uniform and thin cortical layer
    when present at high concentration and distinct patches associated with negative
    membrane curvature at low concentration. Serendipitously, we find that the GUV
    production method also produces dumbbell-shaped GUVs, which we explain using mathematical
    modeling in terms of membrane hemifusion of nested GUVs. We find that branched
    actin networks preferentially assemble at the neck of the dumbbells, which possess
    a micrometer-range convex curvature comparable with the curvature of the actin
    patches found in spherical GUVs. Minimal branched actin networks can thus sense
    membrane curvature, which may help mammalian cells to robustly recruit actin to
    curved membranes to facilitate diverse cellular functions such as cytokinesis
    and migration.
acknowledgement: We thank Jeffrey den Haan for protein purification, Kristina Ganzinger
  (AMOLF) for providing the 10xHis VCA construct, David Kovar (University of Chicago)
  for the CP constructs, and Michael Way (Crick Institute) for providing purified
  human Arp2/3 proteins. We are grateful to Iris Lambert for early actin encapsulation
  experiments that formed the basis for establishing the eDICE method, to Federico
  Fanalista for acquiring images of dumbbell-shaped GUVs in samples produced by cDICE,
  and to Tom Aarts for images of dumbbell-shaped GUVs produced by gel-assisted swelling.
  Lennard van Buren is thanked for his help with image analysis to quantify actin
  concentrations in GUVs. We thank Kristina Ganzinger (AMOLF) for hosting us to perform
  pyrene assays in her lab, and Balász Antalicz (AMOLF) for technical assistance with
  the spectrophotometer. The authors also thank Matthieu Piel and Daniel Fletcher
  for insightful and inspiring discussions. We acknowledge financial support from
  The Netherlands Organization of Scientific Research (NWO/OCW) Gravitation program
  Building a Synthetic Cell (BaSyC) (024.003.019). F.F. gratefully acknowledges funding
  from the Kavli Synergy program of the Kavli Institute of Nanoscience Delft.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Lucia
  full_name: Baldauf, Lucia
  last_name: Baldauf
- first_name: Felix F
  full_name: Frey, Felix F
  id: a0270b37-8f1a-11ec-95c7-8e710c59a4f3
  last_name: Frey
- first_name: Marcos
  full_name: Arribas Perez, Marcos
  last_name: Arribas Perez
- first_name: Timon
  full_name: Idema, Timon
  last_name: Idema
- first_name: Gijsje H.
  full_name: Koenderink, Gijsje H.
  last_name: Koenderink
citation:
  ama: Baldauf L, Frey FF, Arribas Perez M, Idema T, Koenderink GH. Branched actin
    cortices reconstituted in vesicles sense membrane curvature. <i>Biophysical Journal</i>.
    2023;122(11):2311-2324. doi:<a href="https://doi.org/10.1016/j.bpj.2023.02.018">10.1016/j.bpj.2023.02.018</a>
  apa: Baldauf, L., Frey, F. F., Arribas Perez, M., Idema, T., &#38; Koenderink, G.
    H. (2023). Branched actin cortices reconstituted in vesicles sense membrane curvature.
    <i>Biophysical Journal</i>. Elsevier. <a href="https://doi.org/10.1016/j.bpj.2023.02.018">https://doi.org/10.1016/j.bpj.2023.02.018</a>
  chicago: Baldauf, Lucia, Felix F Frey, Marcos Arribas Perez, Timon Idema, and Gijsje
    H. Koenderink. “Branched Actin Cortices Reconstituted in Vesicles Sense Membrane
    Curvature.” <i>Biophysical Journal</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.bpj.2023.02.018">https://doi.org/10.1016/j.bpj.2023.02.018</a>.
  ieee: L. Baldauf, F. F. Frey, M. Arribas Perez, T. Idema, and G. H. Koenderink,
    “Branched actin cortices reconstituted in vesicles sense membrane curvature,”
    <i>Biophysical Journal</i>, vol. 122, no. 11. Elsevier, pp. 2311–2324, 2023.
  ista: Baldauf L, Frey FF, Arribas Perez M, Idema T, Koenderink GH. 2023. Branched
    actin cortices reconstituted in vesicles sense membrane curvature. Biophysical
    Journal. 122(11), 2311–2324.
  mla: Baldauf, Lucia, et al. “Branched Actin Cortices Reconstituted in Vesicles Sense
    Membrane Curvature.” <i>Biophysical Journal</i>, vol. 122, no. 11, Elsevier, 2023,
    pp. 2311–24, doi:<a href="https://doi.org/10.1016/j.bpj.2023.02.018">10.1016/j.bpj.2023.02.018</a>.
  short: L. Baldauf, F.F. Frey, M. Arribas Perez, T. Idema, G.H. Koenderink, Biophysical
    Journal 122 (2023) 2311–2324.
date_created: 2024-01-10T09:45:48Z
date_published: 2023-06-06T00:00:00Z
date_updated: 2024-01-16T09:20:03Z
day: '06'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.1016/j.bpj.2023.02.018
external_id:
  isi:
  - '001016792600001'
  pmid:
  - '36806830'
file:
- access_level: open_access
  checksum: 70566e54cd95ea6df340909ad44c5cd5
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-16T09:09:29Z
  date_updated: 2024-01-16T09:09:29Z
  file_id: '14807'
  file_name: 2023_BiophysicalJournal_Baldauf.pdf
  file_size: 3285810
  relation: main_file
  success: 1
file_date_updated: 2024-01-16T09:09:29Z
has_accepted_license: '1'
intvolume: '       122'
isi: 1
issue: '11'
keyword:
- Biophysics
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 2311-2324
pmid: 1
publication: Biophysical Journal
publication_identifier:
  issn:
  - 0006-3495
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/BioSoftMatterGroup/actin-curvature-sensing
status: public
title: Branched actin cortices reconstituted in vesicles sense membrane curvature
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 122
year: '2023'
...
---
_id: '10145'
abstract:
- lang: eng
  text: We study direct integrals of quadratic and Dirichlet forms. We show that each
    quasi-regular Dirichlet space over a probability space admits a unique representation
    as a direct integral of irreducible Dirichlet spaces, quasi-regular for the same
    underlying topology. The same holds for each quasi-regular strongly local Dirichlet
    space over a metrizable Luzin σ-finite Radon measure space, and admitting carré
    du champ operator. In this case, the representation is only projectively unique.
acknowledgement: The author is grateful to Professors Sergio Albeverio and Andreas
  Eberle, and to Dr. Kohei Suzuki, for fruitful conversations on the subject of the
  present work, and for respectively pointing out the references [1, 13], and [3,
  20]. Finally, he is especially grateful to an anonymous Reviewer for their very
  careful reading and their suggestions which improved the readability of the paper.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
  full_name: Dello Schiavo, Lorenzo
  id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
  last_name: Dello Schiavo
  orcid: 0000-0002-9881-6870
citation:
  ama: Dello Schiavo L. Ergodic decomposition of Dirichlet forms via direct integrals
    and applications. <i>Potential Analysis</i>. 2023;58:573-615. doi:<a href="https://doi.org/10.1007/s11118-021-09951-y">10.1007/s11118-021-09951-y</a>
  apa: Dello Schiavo, L. (2023). Ergodic decomposition of Dirichlet forms via direct
    integrals and applications. <i>Potential Analysis</i>. Springer Nature. <a href="https://doi.org/10.1007/s11118-021-09951-y">https://doi.org/10.1007/s11118-021-09951-y</a>
  chicago: Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct
    Integrals and Applications.” <i>Potential Analysis</i>. Springer Nature, 2023.
    <a href="https://doi.org/10.1007/s11118-021-09951-y">https://doi.org/10.1007/s11118-021-09951-y</a>.
  ieee: L. Dello Schiavo, “Ergodic decomposition of Dirichlet forms via direct integrals
    and applications,” <i>Potential Analysis</i>, vol. 58. Springer Nature, pp. 573–615,
    2023.
  ista: Dello Schiavo L. 2023. Ergodic decomposition of Dirichlet forms via direct
    integrals and applications. Potential Analysis. 58, 573–615.
  mla: Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct
    Integrals and Applications.” <i>Potential Analysis</i>, vol. 58, Springer Nature,
    2023, pp. 573–615, doi:<a href="https://doi.org/10.1007/s11118-021-09951-y">10.1007/s11118-021-09951-y</a>.
  short: L. Dello Schiavo, Potential Analysis 58 (2023) 573–615.
date_created: 2021-10-17T22:01:17Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2023-10-04T09:19:12Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s11118-021-09951-y
ec_funded: 1
external_id:
  arxiv:
  - '2003.01366'
  isi:
  - '000704213400001'
file:
- access_level: open_access
  checksum: 625526482be300ca7281c91c30d41725
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-04T09:18:59Z
  date_updated: 2023-10-04T09:18:59Z
  file_id: '14387'
  file_name: 2023_PotentialAnalysis_DelloSchiavo.pdf
  file_size: 806391
  relation: main_file
  success: 1
file_date_updated: 2023-10-04T09:18:59Z
has_accepted_license: '1'
intvolume: '        58'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 573-615
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
publication: Potential Analysis
publication_identifier:
  eissn:
  - 1572-929X
  issn:
  - 0926-2601
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ergodic decomposition of Dirichlet forms via direct integrals and applications
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 58
year: '2023'
...
---
_id: '10173'
abstract:
- lang: eng
  text: We study the large scale behavior of elliptic systems with stationary random
    coefficient that have only slowly decaying correlations. To this aim we analyze
    the so-called corrector equation, a degenerate elliptic equation posed in the
    probability space. In this contribution, we use a parabolic approach and optimally
    quantify the time decay of the semigroup. For the theoretical point of view, we
    prove an optimal decay estimate of the gradient and flux of the corrector when
    spatially averaged over a scale R larger than 1. For the numerical point of view,
    our results provide convenient tools for the analysis of various numerical methods.
acknowledgement: "I would like to thank my advisor Antoine Gloria for suggesting this
  problem to me, as well for many interesting discussions and suggestions.\r\nOpen
  access funding provided by Institute of Science and Technology (IST Austria)."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Nicolas
  full_name: Clozeau, Nicolas
  id: fea1b376-906f-11eb-847d-b2c0cf46455b
  last_name: Clozeau
citation:
  ama: 'Clozeau N. Optimal decay of the parabolic semigroup in stochastic homogenization 
    for correlated coefficient fields. <i>Stochastics and Partial Differential Equations:
    Analysis and Computations</i>. 2023;11:1254–1378. doi:<a href="https://doi.org/10.1007/s40072-022-00254-w">10.1007/s40072-022-00254-w</a>'
  apa: 'Clozeau, N. (2023). Optimal decay of the parabolic semigroup in stochastic
    homogenization  for correlated coefficient fields. <i>Stochastics and Partial
    Differential Equations: Analysis and Computations</i>. Springer Nature. <a href="https://doi.org/10.1007/s40072-022-00254-w">https://doi.org/10.1007/s40072-022-00254-w</a>'
  chicago: 'Clozeau, Nicolas. “Optimal Decay of the Parabolic Semigroup in Stochastic
    Homogenization  for Correlated Coefficient Fields.” <i>Stochastics and Partial
    Differential Equations: Analysis and Computations</i>. Springer Nature, 2023.
    <a href="https://doi.org/10.1007/s40072-022-00254-w">https://doi.org/10.1007/s40072-022-00254-w</a>.'
  ieee: 'N. Clozeau, “Optimal decay of the parabolic semigroup in stochastic homogenization 
    for correlated coefficient fields,” <i>Stochastics and Partial Differential Equations:
    Analysis and Computations</i>, vol. 11. Springer Nature, pp. 1254–1378, 2023.'
  ista: 'Clozeau N. 2023. Optimal decay of the parabolic semigroup in stochastic homogenization 
    for correlated coefficient fields. Stochastics and Partial Differential Equations:
    Analysis and Computations. 11, 1254–1378.'
  mla: 'Clozeau, Nicolas. “Optimal Decay of the Parabolic Semigroup in Stochastic
    Homogenization  for Correlated Coefficient Fields.” <i>Stochastics and Partial
    Differential Equations: Analysis and Computations</i>, vol. 11, Springer Nature,
    2023, pp. 1254–1378, doi:<a href="https://doi.org/10.1007/s40072-022-00254-w">10.1007/s40072-022-00254-w</a>.'
  short: 'N. Clozeau, Stochastics and Partial Differential Equations: Analysis and
    Computations 11 (2023) 1254–1378.'
date_created: 2021-10-23T10:50:22Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2023-08-14T11:51:47Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s40072-022-00254-w
external_id:
  arxiv:
  - '2102.07452'
  isi:
  - '000799715600001'
file:
- access_level: open_access
  checksum: f83dcaecdbd3ace862c4ed97a20e8501
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-14T11:51:04Z
  date_updated: 2023-08-14T11:51:04Z
  file_id: '14052'
  file_name: 2023_StochPartialDiffEquations_Clozeau.pdf
  file_size: 1635193
  relation: main_file
  success: 1
file_date_updated: 2023-08-14T11:51:04Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1254–1378
publication: 'Stochastics and Partial Differential Equations: Analysis and Computations'
publication_identifier:
  issn:
  - 2194-0401
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal decay of the parabolic semigroup in stochastic homogenization  for
  correlated coefficient fields
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2023'
...
---
_id: '10405'
abstract:
- lang: eng
  text: 'We consider large non-Hermitian random matrices X with complex, independent,
    identically distributed centred entries and show that the linear statistics of
    their eigenvalues are asymptotically Gaussian for test functions having 2+ϵ derivatives.
    Previously this result was known only for a few special cases; either the test
    functions were required to be analytic [72], or the distribution of the matrix
    elements needed to be Gaussian [73], or at least match the Gaussian up to the
    first four moments [82, 56]. We find the exact dependence of the limiting variance
    on the fourth cumulant that was not known before. The proof relies on two novel
    ingredients: (i) a local law for a product of two resolvents of the Hermitisation
    of X with different spectral parameters and (ii) a coupling of several weakly
    dependent Dyson Brownian motions. These methods are also the key inputs for our
    analogous results on the linear eigenvalue statistics of real matrices X that
    are presented in the companion paper [32]. '
acknowledgement: L.E. would like to thank Nathanaël Berestycki and D.S.would like
  to thank Nina Holden for valuable discussions on the Gaussian freeﬁeld.G.C. and
  L.E. are partially supported by ERC Advanced Grant No. 338804.G.C. received funding
  from the European Union’s Horizon 2020 research and in-novation programme under
  the Marie Skłodowska-Curie Grant Agreement No.665385. D.S. is supported by Dr. Max
  Rössler, the Walter Haefner Foundation, and the ETH Zürich Foundation.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Cipolloni G, Erdös L, Schröder DJ. Central limit theorem for linear eigenvalue
    statistics of non-Hermitian random matrices. <i>Communications on Pure and Applied
    Mathematics</i>. 2023;76(5):946-1034. doi:<a href="https://doi.org/10.1002/cpa.22028">10.1002/cpa.22028</a>
  apa: Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2023). Central limit theorem
    for linear eigenvalue statistics of non-Hermitian random matrices. <i>Communications
    on Pure and Applied Mathematics</i>. Wiley. <a href="https://doi.org/10.1002/cpa.22028">https://doi.org/10.1002/cpa.22028</a>
  chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Central Limit
    Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” <i>Communications
    on Pure and Applied Mathematics</i>. Wiley, 2023. <a href="https://doi.org/10.1002/cpa.22028">https://doi.org/10.1002/cpa.22028</a>.
  ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Central limit theorem for linear
    eigenvalue statistics of non-Hermitian random matrices,” <i>Communications on
    Pure and Applied Mathematics</i>, vol. 76, no. 5. Wiley, pp. 946–1034, 2023.
  ista: Cipolloni G, Erdös L, Schröder DJ. 2023. Central limit theorem for linear
    eigenvalue statistics of non-Hermitian random matrices. Communications on Pure
    and Applied Mathematics. 76(5), 946–1034.
  mla: Cipolloni, Giorgio, et al. “Central Limit Theorem for Linear Eigenvalue Statistics
    of Non-Hermitian Random Matrices.” <i>Communications on Pure and Applied Mathematics</i>,
    vol. 76, no. 5, Wiley, 2023, pp. 946–1034, doi:<a href="https://doi.org/10.1002/cpa.22028">10.1002/cpa.22028</a>.
  short: G. Cipolloni, L. Erdös, D.J. Schröder, Communications on Pure and Applied
    Mathematics 76 (2023) 946–1034.
date_created: 2021-12-05T23:01:41Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2023-10-04T09:22:55Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1002/cpa.22028
ec_funded: 1
external_id:
  arxiv:
  - '1912.04100'
  isi:
  - '000724652500001'
file:
- access_level: open_access
  checksum: 8346bc2642afb4ccb7f38979f41df5d9
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-04T09:21:48Z
  date_updated: 2023-10-04T09:21:48Z
  file_id: '14388'
  file_name: 2023_CommPureMathematics_Cipolloni.pdf
  file_size: 803440
  relation: main_file
  success: 1
file_date_updated: 2023-10-04T09:21:48Z
has_accepted_license: '1'
intvolume: '        76'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 946-1034
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: Communications on Pure and Applied Mathematics
publication_identifier:
  eissn:
  - 1097-0312
  issn:
  - 0010-3640
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Central limit theorem for linear eigenvalue statistics of non-Hermitian random
  matrices
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2023'
...
---
_id: '10550'
abstract:
- lang: eng
  text: The global existence of renormalised solutions and convergence to equilibrium
    for reaction-diffusion systems with non-linear diffusion are investigated. The
    system is assumed to have quasi-positive non-linearities and to satisfy an entropy
    inequality. The difficulties in establishing global renormalised solutions caused
    by possibly degenerate diffusion are overcome by introducing a new class of weighted
    truncation functions. By means of the obtained global renormalised solutions,
    we study the large-time behaviour of complex balanced systems arising from chemical
    reaction network theory with non-linear diffusion. When the reaction network does
    not admit boundary equilibria, the complex balanced equilibrium is shown, by using
    the entropy method, to exponentially attract all renormalised solutions in the
    same compatibility class. This convergence extends even to a range of non-linear
    diffusion, where global existence is an open problem, yet we are able to show
    that solutions to approximate systems converge exponentially to equilibrium uniformly
    in the regularisation parameter.
acknowledgement: "We thank the referees for their valuable comments and suggestions.
  A major part of this work was carried out when B. Q. Tang visited the Institute
  of Science and Technology Austria (ISTA). The hospitality of ISTA is greatly acknowledged.
  This work was partially supported by NAWI Graz.\r\nOpen access funding provided
  by University of Graz."
article_number: '66'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Klemens
  full_name: Fellner, Klemens
  last_name: Fellner
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Michael
  full_name: Kniely, Michael
  id: 2CA2C08C-F248-11E8-B48F-1D18A9856A87
  last_name: Kniely
  orcid: 0000-0001-5645-4333
- first_name: Bao Quoc
  full_name: Tang, Bao Quoc
  last_name: Tang
citation:
  ama: Fellner K, Fischer JL, Kniely M, Tang BQ. Global renormalised solutions and
    equilibration of reaction-diffusion systems with non-linear diffusion. <i>Journal
    of Nonlinear Science</i>. 2023;33. doi:<a href="https://doi.org/10.1007/s00332-023-09926-w">10.1007/s00332-023-09926-w</a>
  apa: Fellner, K., Fischer, J. L., Kniely, M., &#38; Tang, B. Q. (2023). Global renormalised
    solutions and equilibration of reaction-diffusion systems with non-linear diffusion.
    <i>Journal of Nonlinear Science</i>. Springer Nature. <a href="https://doi.org/10.1007/s00332-023-09926-w">https://doi.org/10.1007/s00332-023-09926-w</a>
  chicago: Fellner, Klemens, Julian L Fischer, Michael Kniely, and Bao Quoc Tang.
    “Global Renormalised Solutions and Equilibration of Reaction-Diffusion Systems
    with Non-Linear Diffusion.” <i>Journal of Nonlinear Science</i>. Springer Nature,
    2023. <a href="https://doi.org/10.1007/s00332-023-09926-w">https://doi.org/10.1007/s00332-023-09926-w</a>.
  ieee: K. Fellner, J. L. Fischer, M. Kniely, and B. Q. Tang, “Global renormalised
    solutions and equilibration of reaction-diffusion systems with non-linear diffusion,”
    <i>Journal of Nonlinear Science</i>, vol. 33. Springer Nature, 2023.
  ista: Fellner K, Fischer JL, Kniely M, Tang BQ. 2023. Global renormalised solutions
    and equilibration of reaction-diffusion systems with non-linear diffusion. Journal
    of Nonlinear Science. 33, 66.
  mla: Fellner, Klemens, et al. “Global Renormalised Solutions and Equilibration of
    Reaction-Diffusion Systems with Non-Linear Diffusion.” <i>Journal of Nonlinear
    Science</i>, vol. 33, 66, Springer Nature, 2023, doi:<a href="https://doi.org/10.1007/s00332-023-09926-w">10.1007/s00332-023-09926-w</a>.
  short: K. Fellner, J.L. Fischer, M. Kniely, B.Q. Tang, Journal of Nonlinear Science
    33 (2023).
date_created: 2021-12-16T12:15:35Z
date_published: 2023-06-07T00:00:00Z
date_updated: 2023-08-01T14:40:33Z
day: '07'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s00332-023-09926-w
external_id:
  arxiv:
  - '2109.12019'
  isi:
  - '001002343400002'
file:
- access_level: open_access
  checksum: f3f0f0886098e31c81116cff8183750b
  content_type: application/pdf
  creator: dernst
  date_created: 2023-06-19T07:33:53Z
  date_updated: 2023-06-19T07:33:53Z
  file_id: '13149'
  file_name: 2023_JourNonlinearScience_Fellner.pdf
  file_size: 742315
  relation: main_file
  success: 1
file_date_updated: 2023-06-19T07:33:53Z
has_accepted_license: '1'
intvolume: '        33'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Journal of Nonlinear Science
publication_identifier:
  eissn:
  - 1432-1467
  issn:
  - 0938-8974
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Global renormalised solutions and equilibration of reaction-diffusion systems
  with non-linear diffusion
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 33
year: '2023'
...
---
_id: '10551'
abstract:
- lang: eng
  text: 'The Dean–Kawasaki equation—a strongly singular SPDE—is a basic equation of
    fluctuating hydrodynamics; it has been proposed in the physics literature to describe
    the fluctuations of the density of N independent diffusing particles in the regime
    of large particle numbers N≫1. The singular nature of the Dean–Kawasaki equation
    presents a substantial challenge for both its analysis and its rigorous mathematical
    justification. Besides being non-renormalisable by the theory of regularity structures
    by Hairer et al., it has recently been shown to not even admit nontrivial martingale
    solutions. In the present work, we give a rigorous and fully quantitative justification
    of the Dean–Kawasaki equation by considering the natural regularisation provided
    by standard numerical discretisations: We show that structure-preserving discretisations
    of the Dean–Kawasaki equation may approximate the density fluctuations of N non-interacting
    diffusing particles to arbitrary order in N−1  (in suitable weak metrics). In
    other words, the Dean–Kawasaki equation may be interpreted as a “recipe” for accurate
    and efficient numerical simulations of the density fluctuations of independent
    diffusing particles.'
acknowledgement: "We thank the anonymous referee for his/her careful reading of the
  manuscript and valuable suggestions. FC gratefully acknowledges funding from the
  Austrian Science Fund (FWF) through the project F65, and from the European Union’s
  Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  Grant Agreement No. 754411.\r\nOpen access funding provided by Austrian Science
  Fund (FWF)."
article_number: '76'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Federico
  full_name: Cornalba, Federico
  id: 2CEB641C-A400-11E9-A717-D712E6697425
  last_name: Cornalba
  orcid: 0000-0002-6269-5149
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
citation:
  ama: Cornalba F, Fischer JL. The Dean-Kawasaki equation and the structure of density
    fluctuations in systems of diffusing particles. <i>Archive for Rational Mechanics
    and Analysis</i>. 2023;247(5). doi:<a href="https://doi.org/10.1007/s00205-023-01903-7">10.1007/s00205-023-01903-7</a>
  apa: Cornalba, F., &#38; Fischer, J. L. (2023). The Dean-Kawasaki equation and the
    structure of density fluctuations in systems of diffusing particles. <i>Archive
    for Rational Mechanics and Analysis</i>. Springer Nature. <a href="https://doi.org/10.1007/s00205-023-01903-7">https://doi.org/10.1007/s00205-023-01903-7</a>
  chicago: Cornalba, Federico, and Julian L Fischer. “The Dean-Kawasaki Equation and
    the Structure of Density Fluctuations in Systems of Diffusing Particles.” <i>Archive
    for Rational Mechanics and Analysis</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00205-023-01903-7">https://doi.org/10.1007/s00205-023-01903-7</a>.
  ieee: F. Cornalba and J. L. Fischer, “The Dean-Kawasaki equation and the structure
    of density fluctuations in systems of diffusing particles,” <i>Archive for Rational
    Mechanics and Analysis</i>, vol. 247, no. 5. Springer Nature, 2023.
  ista: Cornalba F, Fischer JL. 2023. The Dean-Kawasaki equation and the structure
    of density fluctuations in systems of diffusing particles. Archive for Rational
    Mechanics and Analysis. 247(5), 76.
  mla: Cornalba, Federico, and Julian L. Fischer. “The Dean-Kawasaki Equation and
    the Structure of Density Fluctuations in Systems of Diffusing Particles.” <i>Archive
    for Rational Mechanics and Analysis</i>, vol. 247, no. 5, 76, Springer Nature,
    2023, doi:<a href="https://doi.org/10.1007/s00205-023-01903-7">10.1007/s00205-023-01903-7</a>.
  short: F. Cornalba, J.L. Fischer, Archive for Rational Mechanics and Analysis 247
    (2023).
date_created: 2021-12-16T12:16:03Z
date_published: 2023-08-04T00:00:00Z
date_updated: 2024-01-30T12:10:10Z
day: '04'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s00205-023-01903-7
ec_funded: 1
external_id:
  arxiv:
  - '2109.06500'
  isi:
  - '001043086800001'
file:
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intvolume: '       247'
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issue: '5'
language:
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month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
  eissn:
  - 1432-0673
  issn:
  - 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Dean-Kawasaki equation and the structure of density fluctuations in systems
  of diffusing particles
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 247
year: '2023'
...
---
_id: '10770'
abstract:
- lang: eng
  text: Mathematical models often aim to describe a complicated mechanism in a cohesive
    and simple manner. However, reaching perfect balance between being simple enough
    or overly simplistic is a challenging task. Frequently, game-theoretic models
    have an underlying assumption that players, whenever they choose to execute a
    specific action, do so perfectly. In fact, it is rare that action execution perfectly
    coincides with intentions of individuals, giving rise to behavioural mistakes.
    The concept of incompetence of players was suggested to address this issue in
    game-theoretic settings. Under the assumption of incompetence, players have non-zero
    probabilities of executing a different strategy from the one they chose, leading
    to stochastic outcomes of the interactions. In this article, we survey results
    related to the concept of incompetence in classic as well as evolutionary game
    theory and provide several new results. We also suggest future extensions of the
    model and argue why it is important to take into account behavioural mistakes
    when analysing interactions among players in both economic and biological settings.
acknowledgement: "The authors would like to acknowledge stimulating email discussions
  with Dr Wayne Lobb of W.A. Lobb LLC on the topic of evolutionary games. We also
  thank Dr Thomas Taimre for his input to the material in Sect. 3.\r\nThe authors
  would like to acknowledge partial support from the Australian Research Council under
  the Discovery grant DP180101602 and support by the European Union’s Horizon 2020
  research and innovation program under the Marie Sklodowska-Curie Grant Agreement
  #754411."
article_processing_charge: No
article_type: original
author:
- first_name: Thomas
  full_name: Graham, Thomas
  last_name: Graham
- first_name: Maria
  full_name: Kleshnina, Maria
  id: 4E21749C-F248-11E8-B48F-1D18A9856A87
  last_name: Kleshnina
- first_name: Jerzy A.
  full_name: Filar, Jerzy A.
  last_name: Filar
citation:
  ama: Graham T, Kleshnina M, Filar JA. Where do mistakes lead? A survey of games
    with incompetent players. <i>Dynamic Games and Applications</i>. 2023;13:231-264.
    doi:<a href="https://doi.org/10.1007/s13235-022-00425-3">10.1007/s13235-022-00425-3</a>
  apa: Graham, T., Kleshnina, M., &#38; Filar, J. A. (2023). Where do mistakes lead?
    A survey of games with incompetent players. <i>Dynamic Games and Applications</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s13235-022-00425-3">https://doi.org/10.1007/s13235-022-00425-3</a>
  chicago: Graham, Thomas, Maria Kleshnina, and Jerzy A. Filar. “Where Do Mistakes
    Lead? A Survey of Games with Incompetent Players.” <i>Dynamic Games and Applications</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1007/s13235-022-00425-3">https://doi.org/10.1007/s13235-022-00425-3</a>.
  ieee: T. Graham, M. Kleshnina, and J. A. Filar, “Where do mistakes lead? A survey
    of games with incompetent players,” <i>Dynamic Games and Applications</i>, vol.
    13. Springer Nature, pp. 231–264, 2023.
  ista: Graham T, Kleshnina M, Filar JA. 2023. Where do mistakes lead? A survey of
    games with incompetent players. Dynamic Games and Applications. 13, 231–264.
  mla: Graham, Thomas, et al. “Where Do Mistakes Lead? A Survey of Games with Incompetent
    Players.” <i>Dynamic Games and Applications</i>, vol. 13, Springer Nature, 2023,
    pp. 231–64, doi:<a href="https://doi.org/10.1007/s13235-022-00425-3">10.1007/s13235-022-00425-3</a>.
  short: T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications 13 (2023)
    231–264.
date_created: 2022-02-20T23:01:32Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2023-10-04T09:24:30Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/s13235-022-00425-3
ec_funded: 1
external_id:
  isi:
  - '000753777100001'
file:
- access_level: open_access
  checksum: cd53b07e96f9030ddb348f305e5b58c7
  content_type: application/pdf
  creator: dernst
  date_created: 2022-02-21T08:54:17Z
  date_updated: 2022-02-21T08:54:17Z
  file_id: '10781'
  file_name: 2022_DynamicGamesApplic_Graham.pdf
  file_size: 1890512
  relation: main_file
  success: 1
file_date_updated: 2022-02-21T08:54:17Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 231-264
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Dynamic Games and Applications
publication_identifier:
  eissn:
  - 2153-0793
  issn:
  - 2153-0785
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Where do mistakes lead? A survey of games with incompetent players
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2023'
...
---
_id: '9651'
abstract:
- lang: eng
  text: We introduce a hierachy of equivalence relations on the set of separated nets
    of a given Euclidean space, indexed by concave increasing functions ϕ:(0,∞)→(0,∞).
    Two separated nets are called ϕ-displacement equivalent if, roughly speaking,
    there is a bijection between them which, for large radii R, displaces points of
    norm at most R by something of order at most ϕ(R). We show that the spectrum of
    ϕ-displacement equivalence spans from the established notion of bounded displacement
    equivalence, which corresponds to bounded ϕ, to the indiscrete equivalence relation,
    coresponding to ϕ(R)∈Ω(R), in which all separated nets are equivalent. In between
    the two ends of this spectrum, the notions of ϕ-displacement equivalence are shown
    to be pairwise distinct with respect to the asymptotic classes of ϕ(R) for R→∞.
    We further undertake a comparison of our notion of ϕ-displacement equivalence
    with previously studied relations on separated nets. Particular attention is given
    to the interaction of the notions of ϕ-displacement equivalence with that of bilipschitz
    equivalence.
acknowledgement: 'Open access funding provided by Institute of Science and Technology
  (IST Austria). This work was started while both authors were employed at the University
  of Innsbruck and enjoyed the full support of Austrian Science Fund (FWF): P 30902-N35.
  It was continued when the first named author was employed at University of Leipzig
  and the second named author was employed at Institute of Science and Technology
  of Austria, where he was supported by an IST Fellowship.'
article_number: '15'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Michael
  full_name: Dymond, Michael
  last_name: Dymond
- first_name: Vojtech
  full_name: Kaluza, Vojtech
  id: 21AE5134-9EAC-11EA-BEA2-D7BD3DDC885E
  last_name: Kaluza
  orcid: 0000-0002-2512-8698
citation:
  ama: Dymond M, Kaluza V. Divergence of separated nets with respect to displacement
    equivalence. <i>Geometriae Dedicata</i>. 2023. doi:<a href="https://doi.org/10.1007/s10711-023-00862-3">10.1007/s10711-023-00862-3</a>
  apa: Dymond, M., &#38; Kaluza, V. (2023). Divergence of separated nets with respect
    to displacement equivalence. <i>Geometriae Dedicata</i>. Springer Nature. <a href="https://doi.org/10.1007/s10711-023-00862-3">https://doi.org/10.1007/s10711-023-00862-3</a>
  chicago: Dymond, Michael, and Vojtech Kaluza. “Divergence of Separated Nets with
    Respect to Displacement Equivalence.” <i>Geometriae Dedicata</i>. Springer Nature,
    2023. <a href="https://doi.org/10.1007/s10711-023-00862-3">https://doi.org/10.1007/s10711-023-00862-3</a>.
  ieee: M. Dymond and V. Kaluza, “Divergence of separated nets with respect to displacement
    equivalence,” <i>Geometriae Dedicata</i>. Springer Nature, 2023.
  ista: Dymond M, Kaluza V. 2023. Divergence of separated nets with respect to displacement
    equivalence. Geometriae Dedicata., 15.
  mla: Dymond, Michael, and Vojtech Kaluza. “Divergence of Separated Nets with Respect
    to Displacement Equivalence.” <i>Geometriae Dedicata</i>, 15, Springer Nature,
    2023, doi:<a href="https://doi.org/10.1007/s10711-023-00862-3">10.1007/s10711-023-00862-3</a>.
  short: M. Dymond, V. Kaluza, Geometriae Dedicata (2023).
date_created: 2021-07-14T07:01:27Z
date_published: 2023-11-17T00:00:00Z
date_updated: 2024-01-11T13:06:32Z
day: '17'
department:
- _id: UlWa
doi: 10.1007/s10711-023-00862-3
external_id:
  arxiv:
  - '2102.13046'
  isi:
  - '001105681500001'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s10711-023-00862-3
month: '11'
oa: 1
oa_version: Published Version
publication: Geometriae Dedicata
publication_identifier:
  eissn:
  - 1572-9168
  issn:
  - 0046-5755
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Divergence of separated nets with respect to displacement equivalence
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
