[{"publication":"Israel Journal of Mathematics","title":"Highly irregular separated nets","_id":"9652","oa":1,"ddc":["515","516"],"abstract":[{"text":"In 1998 Burago and Kleiner and (independently) McMullen gave examples of separated nets in Euclidean space which are non-bilipschitz equivalent to the integer lattice. We study weaker notions of equivalence of separated nets and demonstrate that such notions also give rise to distinct equivalence classes. Put differently, we find occurrences of particularly strong divergence of separated nets from the integer lattice. Our approach generalises that of Burago and Kleiner and McMullen which takes place largely in a continuous setting. Existence of irregular separated nets is verified via the existence of non-realisable density functions ρ:[0,1]d→(0,∞). In the present work we obtain stronger types of non-realisable densities.","lang":"eng"}],"publication_status":"published","citation":{"ieee":"M. Dymond and V. Kaluza, “Highly irregular separated nets,” <i>Israel Journal of Mathematics</i>, vol. 253. Springer Nature, pp. 501–554, 2023.","ama":"Dymond M, Kaluza V. Highly irregular separated nets. <i>Israel Journal of Mathematics</i>. 2023;253:501-554. doi:<a href=\"https://doi.org/10.1007/s11856-022-2448-6\">10.1007/s11856-022-2448-6</a>","ista":"Dymond M, Kaluza V. 2023. Highly irregular separated nets. Israel Journal of Mathematics. 253, 501–554.","chicago":"Dymond, Michael, and Vojtech Kaluza. “Highly Irregular Separated Nets.” <i>Israel Journal of Mathematics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s11856-022-2448-6\">https://doi.org/10.1007/s11856-022-2448-6</a>.","short":"M. Dymond, V. Kaluza, Israel Journal of Mathematics 253 (2023) 501–554.","apa":"Dymond, M., &#38; Kaluza, V. (2023). Highly irregular separated nets. <i>Israel Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11856-022-2448-6\">https://doi.org/10.1007/s11856-022-2448-6</a>","mla":"Dymond, Michael, and Vojtech Kaluza. “Highly Irregular Separated Nets.” <i>Israel Journal of Mathematics</i>, vol. 253, Springer Nature, 2023, pp. 501–54, doi:<a href=\"https://doi.org/10.1007/s11856-022-2448-6\">10.1007/s11856-022-2448-6</a>."},"quality_controlled":"1","author":[{"full_name":"Dymond, Michael","first_name":"Michael","last_name":"Dymond"},{"id":"21AE5134-9EAC-11EA-BEA2-D7BD3DDC885E","full_name":"Kaluza, Vojtech","orcid":"0000-0002-2512-8698","last_name":"Kaluza","first_name":"Vojtech"}],"year":"2023","intvolume":"       253","isi":1,"month":"03","date_created":"2021-07-14T07:01:28Z","status":"public","volume":253,"file_date_updated":"2021-07-14T07:41:50Z","publisher":"Springer Nature","article_type":"original","department":[{"_id":"UlWa"}],"has_accepted_license":"1","doi":"10.1007/s11856-022-2448-6","language":[{"iso":"eng"}],"acknowledgement":"This work was done while both authors were employed at the University of Innsbruck and enjoyed the full support of Austrian Science Fund (FWF): P 30902-N35.","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","type":"journal_article","date_updated":"2023-08-14T11:26:34Z","day":"01","scopus_import":"1","publication_identifier":{"eissn":["1565-8511"]},"arxiv":1,"file":[{"date_created":"2021-07-14T07:41:50Z","relation":"main_file","file_size":900422,"content_type":"application/pdf","creator":"vkaluza","file_id":"9653","date_updated":"2021-07-14T07:41:50Z","access_level":"open_access","checksum":"6fa0a3207dd1d6467c309fd1bcc867d1","file_name":"separated_nets.pdf"}],"keyword":["Lipschitz","bilipschitz","bounded displacement","modulus of continuity","separated net","non-realisable density","Burago--Kleiner construction"],"external_id":{"arxiv":["1903.05923"],"isi":["000904950300003"]},"date_published":"2023-03-01T00:00:00Z","page":"501-554"},{"month":"01","date_created":"2022-06-05T22:01:50Z","status":"public","intvolume":"        60","isi":1,"article_type":"original","publisher":"Springer Nature","volume":60,"abstract":[{"text":"The Indian summer monsoon rainfall (ISMR) has been declining since the 1950s. However, since 2002 it is reported to have revived. For these observed changes in the ISMR, several explanations have been reported. Among these explanations, however, the role of the eastern equatorial Indian Ocean (EEIO) is missing despite being one of the warmest regions in the Indian Ocean, and monotonously warming. A recent study reported that EEIO warming impacts the rainfall over northern India. Here we report that warming in the EEIO weakens the low-level Indian summer monsoon circulation and reduces ISMR. A warm EEIO drives easterly winds in the Indo–Pacific sector as a Gill response. The warm EEIO also enhances nocturnal convection offshore the western coast of Sumatra. The latent heating associated with the increased convection augments the Gill response and the resultant circulation opposes the monsoon low-level circulation and weakens the seasonal rainfall.","lang":"eng"}],"publication_status":"published","publication":"Climate Dynamics","title":"Role of the eastern equatorial Indian Ocean warming in the Indian summer monsoon rainfall trend","_id":"11434","related_material":{"link":[{"url":" https://doi.org/10.1007/s00382-022-06401-2","relation":"erratum"}]},"year":"2023","citation":{"apa":"GOSWAMI, B. B. (2023). Role of the eastern equatorial Indian Ocean warming in the Indian summer monsoon rainfall trend. <i>Climate Dynamics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00382-022-06337-7\">https://doi.org/10.1007/s00382-022-06337-7</a>","mla":"GOSWAMI, BIDYUT B. “Role of the Eastern Equatorial Indian Ocean Warming in the Indian Summer Monsoon Rainfall Trend.” <i>Climate Dynamics</i>, vol. 60, Springer Nature, 2023, pp. 427–42, doi:<a href=\"https://doi.org/10.1007/s00382-022-06337-7\">10.1007/s00382-022-06337-7</a>.","chicago":"GOSWAMI, BIDYUT B. “Role of the Eastern Equatorial Indian Ocean Warming in the Indian Summer Monsoon Rainfall Trend.” <i>Climate Dynamics</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00382-022-06337-7\">https://doi.org/10.1007/s00382-022-06337-7</a>.","short":"B.B. GOSWAMI, Climate Dynamics 60 (2023) 427–442.","ista":"GOSWAMI BB. 2023. Role of the eastern equatorial Indian Ocean warming in the Indian summer monsoon rainfall trend. Climate Dynamics. 60, 427–442.","ama":"GOSWAMI BB. Role of the eastern equatorial Indian Ocean warming in the Indian summer monsoon rainfall trend. <i>Climate Dynamics</i>. 2023;60:427-442. doi:<a href=\"https://doi.org/10.1007/s00382-022-06337-7\">10.1007/s00382-022-06337-7</a>","ieee":"B. B. GOSWAMI, “Role of the eastern equatorial Indian Ocean warming in the Indian summer monsoon rainfall trend,” <i>Climate Dynamics</i>, vol. 60. Springer Nature, pp. 427–442, 2023."},"quality_controlled":"1","author":[{"full_name":"Goswami, Bidyut B","id":"3a4ac09c-6d61-11ec-bf66-884cde66b64b","first_name":"Bidyut B","last_name":"Goswami"}],"scopus_import":"1","publication_identifier":{"issn":["0930-7575"],"eissn":["1432-0894"]},"external_id":{"isi":["000803119400002"]},"date_published":"2023-01-01T00:00:00Z","page":"427-442","acknowledgement":"This work was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (NRF-2018R1A5A1024958). Model simulation and data transfer were supported by the National Supercomputing Center with supercomputing resources including technical support (KSC-2019-CHA-0005), the National Center for Meteorological Supercomputer of Korea Meteorological Administration, and by the Korea Research Environment Open NETwork (KREONET), respectively. The authors declare no conflicts of interest.","department":[{"_id":"CaMu"}],"language":[{"iso":"eng"}],"doi":"10.1007/s00382-022-06337-7","oa_version":"None","date_updated":"2023-06-28T11:49:58Z","type":"journal_article","day":"01","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"intvolume":"        16","isi":1,"date_created":"2022-07-03T22:01:33Z","month":"02","status":"public","volume":16,"issue":"2","file_date_updated":"2023-02-27T07:10:17Z","article_type":"original","publisher":"Wiley","publication":"Evolutionary Applications","title":"Ten years of demographic modelling of divergence and speciation in the sea","ddc":["576"],"oa":1,"_id":"11479","publication_status":"published","abstract":[{"lang":"eng","text":"Understanding population divergence that eventually leads to speciation is essential for evolutionary biology. High species diversity in the sea was regarded as a paradox when strict allopatry was considered necessary for most speciation events because geographical barriers seemed largely absent in the sea, and many marine species have high dispersal capacities. Combining genome-wide data with demographic modelling to infer the demographic history of divergence has introduced new ways to address this classical issue. These models assume an ancestral population that splits into two subpopulations diverging according to different scenarios that allow tests for periods of gene flow. Models can also test for heterogeneities in population sizes and migration rates along the genome to account, respectively, for background selection and selection against introgressed ancestry. To investigate how barriers to gene flow arise in the sea, we compiled studies modelling the demographic history of divergence in marine organisms and extracted preferred demographic scenarios together with estimates of demographic parameters. These studies show that geographical barriers to gene flow do exist in the sea but that divergence can also occur without strict isolation. Heterogeneity of gene flow was detected in most population pairs suggesting the predominance of semipermeable barriers during divergence. We found a weak positive relationship between the fraction of the genome experiencing reduced gene flow and levels of genome-wide differentiation. Furthermore, we found that the upper bound of the ‘grey zone of speciation’ for our dataset extended beyond that found before, implying that gene flow between diverging taxa is possible at higher levels of divergence than previously thought. Finally, we list recommendations for further strengthening the use of demographic modelling in speciation research. These include a more balanced representation of taxa, more consistent and comprehensive modelling, clear reporting of results and simulation studies to rule out nonbiological explanations for general results."}],"citation":{"ama":"De Jode A, Le Moan A, Johannesson K, et al. Ten years of demographic modelling of divergence and speciation in the sea. <i>Evolutionary Applications</i>. 2023;16(2):542-559. doi:<a href=\"https://doi.org/10.1111/eva.13428\">10.1111/eva.13428</a>","ieee":"A. De Jode <i>et al.</i>, “Ten years of demographic modelling of divergence and speciation in the sea,” <i>Evolutionary Applications</i>, vol. 16, no. 2. Wiley, pp. 542–559, 2023.","ista":"De Jode A, Le Moan A, Johannesson K, Faria R, Stankowski S, Westram AM, Butlin RK, Rafajlović M, Fraisse C. 2023. Ten years of demographic modelling of divergence and speciation in the sea. Evolutionary Applications. 16(2), 542–559.","chicago":"De Jode, Aurélien, Alan Le Moan, Kerstin Johannesson, Rui Faria, Sean Stankowski, Anja M Westram, Roger K. Butlin, Marina Rafajlović, and Christelle Fraisse. “Ten Years of Demographic Modelling of Divergence and Speciation in the Sea.” <i>Evolutionary Applications</i>. Wiley, 2023. <a href=\"https://doi.org/10.1111/eva.13428\">https://doi.org/10.1111/eva.13428</a>.","short":"A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram, R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 16 (2023) 542–559.","mla":"De Jode, Aurélien, et al. “Ten Years of Demographic Modelling of Divergence and Speciation in the Sea.” <i>Evolutionary Applications</i>, vol. 16, no. 2, Wiley, 2023, pp. 542–59, doi:<a href=\"https://doi.org/10.1111/eva.13428\">10.1111/eva.13428</a>.","apa":"De Jode, A., Le Moan, A., Johannesson, K., Faria, R., Stankowski, S., Westram, A. M., … Fraisse, C. (2023). Ten years of demographic modelling of divergence and speciation in the sea. <i>Evolutionary Applications</i>. Wiley. <a href=\"https://doi.org/10.1111/eva.13428\">https://doi.org/10.1111/eva.13428</a>"},"author":[{"last_name":"De Jode","first_name":"Aurélien","full_name":"De Jode, Aurélien"},{"full_name":"Le Moan, Alan","first_name":"Alan","last_name":"Le Moan"},{"last_name":"Johannesson","first_name":"Kerstin","full_name":"Johannesson, Kerstin"},{"full_name":"Faria, Rui","last_name":"Faria","first_name":"Rui"},{"first_name":"Sean","last_name":"Stankowski","full_name":"Stankowski, Sean","id":"43161670-5719-11EA-8025-FABC3DDC885E"},{"id":"3C147470-F248-11E8-B48F-1D18A9856A87","full_name":"Westram, Anja M","orcid":"0000-0003-1050-4969","first_name":"Anja M","last_name":"Westram"},{"full_name":"Butlin, Roger K.","first_name":"Roger K.","last_name":"Butlin"},{"last_name":"Rafajlović","first_name":"Marina","full_name":"Rafajlović, Marina"},{"last_name":"Fraisse","first_name":"Christelle","orcid":"0000-0001-8441-5075","full_name":"Fraisse, Christelle","id":"32DF5794-F248-11E8-B48F-1D18A9856A87"}],"quality_controlled":"1","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","publication_identifier":{"eissn":["1752-4571"]},"scopus_import":"1","date_published":"2023-02-01T00:00:00Z","external_id":{"isi":["000815663700001"]},"file":[{"success":1,"date_updated":"2023-02-27T07:10:17Z","file_id":"12685","file_name":"2023_EvolutionaryApplications_DeJode.pdf","checksum":"d4d6fa9ddf36643af994a6a757919afb","access_level":"open_access","relation":"main_file","date_created":"2023-02-27T07:10:17Z","file_size":2269822,"content_type":"application/pdf","creator":"dernst"}],"page":"542-559","language":[{"iso":"eng"}],"doi":"10.1111/eva.13428","department":[{"_id":"NiBa"},{"_id":"BeVi"}],"has_accepted_license":"1","acknowledgement":"We greatly thank all the corresponding authors of the studies that were included in our synthesis for the sharing of additional data: Thomas Broquet, Dmitry Filatov, Quentin Rougemont, Paolo Momigliano, Pierre-Alexandre Gagnaire, Carlos Prada, Ahmed Souissi, Michael Møller Hansen, Sylvie Lapègue, Joseph Di Battista, Michael Hellberg and Carlos Prada. RKB and ADJ were supported by the European Research Council. MR was supported by the Swedish Research Council Vetenskapsrådet (grant number 2021-05243; to MR) and Formas (grant number 2019-00882; to KJ and MR), and by additional grants from the European Research Council (to RKB) and Vetenskapsrådet (to KJ) through the Centre for Marine Evolutionary Biology (https://www.gu.se/en/cemeb-marine-evolutionary-biology).","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","article_processing_charge":"No","type":"journal_article","date_updated":"2023-08-01T12:25:44Z","oa_version":"Published Version","day":"01"},{"oa":1,"ddc":["510"],"_id":"11706","title":"Asymmetric Ramsey properties of random graphs involving cliques and cycles","publication":"Random Structures and Algorithms","publication_status":"published","abstract":[{"text":"We say that (Formula presented.) if, in every edge coloring (Formula presented.), we can find either a 1-colored copy of (Formula presented.) or a 2-colored copy of (Formula presented.). The well-known states that the threshold for the property (Formula presented.) is equal to (Formula presented.), where (Formula presented.) is given by (Formula presented.) for any pair of graphs (Formula presented.) and (Formula presented.) with (Formula presented.). In this article, we show the 0-statement of the Kohayakawa–Kreuter conjecture for every pair of cycles and cliques. ","lang":"eng"}],"quality_controlled":"1","author":[{"full_name":"Liebenau, Anita","last_name":"Liebenau","first_name":"Anita"},{"full_name":"Mattos, Letícia","first_name":"Letícia","last_name":"Mattos"},{"full_name":"Mendonca Dos Santos, Walner","id":"12c6bd4d-2cd0-11ec-a0da-e28f42f65ebd","first_name":"Walner","last_name":"Mendonca Dos Santos"},{"last_name":"Skokan","first_name":"Jozef","full_name":"Skokan, Jozef"}],"citation":{"ieee":"A. Liebenau, L. Mattos, W. Mendonca dos Santos, and J. Skokan, “Asymmetric Ramsey properties of random graphs involving cliques and cycles,” <i>Random Structures and Algorithms</i>, vol. 62, no. 4. Wiley, pp. 1035–1055, 2023.","ama":"Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. Asymmetric Ramsey properties of random graphs involving cliques and cycles. <i>Random Structures and Algorithms</i>. 2023;62(4):1035-1055. doi:<a href=\"https://doi.org/10.1002/rsa.21106\">10.1002/rsa.21106</a>","ista":"Liebenau A, Mattos L, Mendonca dos Santos W, Skokan J. 2023. Asymmetric Ramsey properties of random graphs involving cliques and cycles. Random Structures and Algorithms. 62(4), 1035–1055.","chicago":"Liebenau, Anita, Letícia Mattos, Walner Mendonca dos Santos, and Jozef Skokan. “Asymmetric Ramsey Properties of Random Graphs Involving Cliques and Cycles.” <i>Random Structures and Algorithms</i>. Wiley, 2023. <a href=\"https://doi.org/10.1002/rsa.21106\">https://doi.org/10.1002/rsa.21106</a>.","short":"A. Liebenau, L. Mattos, W. Mendonca dos Santos, J. Skokan, Random Structures and Algorithms 62 (2023) 1035–1055.","mla":"Liebenau, Anita, et al. “Asymmetric Ramsey Properties of Random Graphs Involving Cliques and Cycles.” <i>Random Structures and Algorithms</i>, vol. 62, no. 4, Wiley, 2023, pp. 1035–55, doi:<a href=\"https://doi.org/10.1002/rsa.21106\">10.1002/rsa.21106</a>.","apa":"Liebenau, A., Mattos, L., Mendonca dos Santos, W., &#38; Skokan, J. (2023). Asymmetric Ramsey properties of random graphs involving cliques and cycles. <i>Random Structures and Algorithms</i>. Wiley. <a href=\"https://doi.org/10.1002/rsa.21106\">https://doi.org/10.1002/rsa.21106</a>"},"year":"2023","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"isi":1,"intvolume":"        62","status":"public","date_created":"2022-07-31T22:01:49Z","month":"07","volume":62,"issue":"4","article_type":"original","publisher":"Wiley","file_date_updated":"2023-10-04T09:37:26Z","language":[{"iso":"eng"}],"doi":"10.1002/rsa.21106","department":[{"_id":"MaKw"}],"has_accepted_license":"1","acknowledgement":"This work was started at the thematic program GRAPHS@IMPA (January–March 2018), in Rio de Janeiro. We thank IMPA and the organisers for the hospitality and for providing a pleasant research environment. We thank Rob Morris for helpful discussions, and the anonymous referees for their careful reading and many helpful suggestions. Open Access funding enabled and organized by Projekt DEAL.\r\nA. Liebenau was supported by an ARC DECRA Fellowship Grant DE170100789. L. Mattos was supported by CAPES and by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – The Berlin Mathematics Research Center MATH+ (EXC-2046/1, project ID: 390685689). W. Mendonça was supported by CAPES project 88882.332408/2010-01.","article_processing_charge":"Yes (in subscription journal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","date_updated":"2023-10-04T09:38:45Z","type":"journal_article","oa_version":"Published Version","publication_identifier":{"issn":["1042-9832"],"eissn":["1098-2418"]},"scopus_import":"1","page":"1035-1055","date_published":"2023-07-01T00:00:00Z","file":[{"relation":"main_file","date_created":"2023-10-04T09:37:26Z","creator":"dernst","content_type":"application/pdf","file_size":1362334,"success":1,"date_updated":"2023-10-04T09:37:26Z","file_id":"14389","file_name":"2023_RandomStructureAlgorithms_Liebenau.pdf","checksum":"3a5969d0c512aef01c30f3dc81c6d59b","access_level":"open_access"}],"external_id":{"isi":["000828530400001"]}},{"year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"quality_controlled":"1","author":[{"last_name":"Cipolloni","first_name":"Giorgio","orcid":"0000-0002-4901-7992","full_name":"Cipolloni, Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-5366-9603","full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","last_name":"Erdös","first_name":"László"},{"first_name":"Dominik J","last_name":"Schröder","orcid":"0000-0002-2904-1856","full_name":"Schröder, Dominik J","id":"408ED176-F248-11E8-B48F-1D18A9856A87"}],"citation":{"short":"G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields 185 (2023) 1183–1218.","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Quenched Universality for Deformed Wigner Matrices.” <i>Probability Theory and Related Fields</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00440-022-01156-7\">https://doi.org/10.1007/s00440-022-01156-7</a>.","ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Quenched universality for deformed Wigner matrices. Probability Theory and Related Fields. 185, 1183–1218.","ama":"Cipolloni G, Erdös L, Schröder DJ. Quenched universality for deformed Wigner matrices. <i>Probability Theory and Related Fields</i>. 2023;185:1183–1218. doi:<a href=\"https://doi.org/10.1007/s00440-022-01156-7\">10.1007/s00440-022-01156-7</a>","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Quenched universality for deformed Wigner matrices,” <i>Probability Theory and Related Fields</i>, vol. 185. Springer Nature, pp. 1183–1218, 2023.","apa":"Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2023). Quenched universality for deformed Wigner matrices. <i>Probability Theory and Related Fields</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00440-022-01156-7\">https://doi.org/10.1007/s00440-022-01156-7</a>","mla":"Cipolloni, Giorgio, et al. “Quenched Universality for Deformed Wigner Matrices.” <i>Probability Theory and Related Fields</i>, vol. 185, Springer Nature, 2023, pp. 1183–1218, doi:<a href=\"https://doi.org/10.1007/s00440-022-01156-7\">10.1007/s00440-022-01156-7</a>."},"abstract":[{"lang":"eng","text":"Following E. Wigner’s original vision, we prove that sampling the eigenvalue gaps within the bulk spectrum of a fixed (deformed) Wigner matrix H yields the celebrated Wigner-Dyson-Mehta universal statistics with high probability. Similarly, we prove universality for a monoparametric family of deformed Wigner matrices H+xA with a deterministic Hermitian matrix A and a fixed Wigner matrix H, just using the randomness of a single scalar real random variable x. Both results constitute quenched versions of bulk universality that has so far only been proven in annealed sense with respect to the probability space of the matrix ensemble."}],"publication_status":"published","_id":"11741","ddc":["510"],"oa":1,"publication":"Probability Theory and Related Fields","title":"Quenched universality for deformed Wigner matrices","publisher":"Springer Nature","article_type":"original","file_date_updated":"2023-08-14T12:47:32Z","volume":185,"status":"public","month":"04","date_created":"2022-08-07T22:02:00Z","isi":1,"intvolume":"       185","day":"01","oa_version":"Published Version","date_updated":"2023-08-14T12:48:09Z","type":"journal_article","article_processing_charge":"Yes (via OA deal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"The authors are indebted to Sourav Chatterjee for forwarding the very inspiring question that Stephen Shenker originally addressed to him which initiated the current paper. They are also grateful that the authors of [23] kindly shared their preliminary numerical results in June 2021.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).","has_accepted_license":"1","department":[{"_id":"LaEr"}],"language":[{"iso":"eng"}],"doi":"10.1007/s00440-022-01156-7","page":"1183–1218","external_id":{"arxiv":["2106.10200"],"isi":["000830344500001"]},"file":[{"date_created":"2023-08-14T12:47:32Z","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":782278,"date_updated":"2023-08-14T12:47:32Z","file_id":"14054","success":1,"access_level":"open_access","checksum":"b9247827dae5544d1d19c37abe547abc","file_name":"2023_ProbabilityTheory_Cipolloni.pdf"}],"date_published":"2023-04-01T00:00:00Z","arxiv":1,"scopus_import":"1","publication_identifier":{"eissn":["1432-2064"],"issn":["0178-8051"]}},{"doi":"10.1007/s00454-022-00394-9","language":[{"iso":"eng"}],"has_accepted_license":"1","department":[{"_id":"UlWa"}],"ec_funded":1,"acknowledgement":"This work was started during the 6th Austrian–Japanese–Mexican–Spanish Workshop on Discrete Geometry in June 2019 in Austria. We thank all the participants for the good atmosphere as well as discussions on the topic. Also, we thank Jan Kynčl for sending us remarks on a preliminary version of this work and an anonymous referee for further helpful comments.Alan Arroyo was funded by the Marie Skłodowska-Curie grant agreement No 754411. Fabian Klute was partially supported by the Netherlands Organisation for Scientific Research (NWO) under project no. 612.001.651 and by the Austrian Science Fund (FWF): J-4510. Irene Parada and Birgit Vogtenhuber were partially supported by the Austrian Science Fund (FWF): W1230 and within the collaborative DACH project Arrangements and Drawings as FWF project I 3340-N35. Irene Parada was also partially supported by the Independent Research Fund Denmark grant 2020-2023 (9131-00044B) Dynamic Network Analysis and by the Margarita Salas Fellowship funded by the Ministry of Universities of Spain and the European Union (NextGenerationEU). Tilo Wiedera was supported by the German Research Foundation (DFG) grant CH 897/2-2.","article_processing_charge":"Yes (in subscription journal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","type":"journal_article","date_updated":"2023-08-14T12:51:25Z","oa_version":"Published Version","publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"scopus_import":"1","arxiv":1,"page":"745–770","date_published":"2023-04-01T00:00:00Z","external_id":{"arxiv":["1909.07347"],"isi":["000840292800001"]},"file":[{"relation":"main_file","date_created":"2022-08-29T11:23:15Z","file_size":1002218,"creator":"alisjak","content_type":"application/pdf","success":1,"file_id":"12006","date_updated":"2022-08-29T11:23:15Z","file_name":"2022_DiscreteandComputionalGeometry_Arroyo.pdf","checksum":"def7ae3b28d9fd6aec16450e40090302","access_level":"open_access"}],"ddc":["510"],"oa":1,"_id":"11999","publication":"Discrete and Computational Geometry","title":"Inserting one edge into a simple drawing is hard","publication_status":"published","abstract":[{"lang":"eng","text":"A simple drawing D(G) of a graph G is one where each pair of edges share at most one point: either a common endpoint or a proper crossing. An edge e in the complement of G can be inserted into D(G) if there exists a simple drawing of G+e extending D(G). As a result of Levi’s Enlargement Lemma, if a drawing is rectilinear (pseudolinear), that is, the edges can be extended into an arrangement of lines (pseudolines), then any edge in the complement of G can be inserted. In contrast, we show that it is NP-complete to decide whether one edge can be inserted into a simple drawing. This remains true even if we assume that the drawing is pseudocircular, that is, the edges can be extended to an arrangement of pseudocircles. On the positive side, we show that, given an arrangement of pseudocircles A and a pseudosegment σ, it can be decided in polynomial time whether there exists a pseudocircle Φσ extending σ for which A∪{Φσ} is again an arrangement of pseudocircles."}],"project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"author":[{"id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","full_name":"Arroyo Guevara, Alan M","orcid":"0000-0003-2401-8670","last_name":"Arroyo Guevara","first_name":"Alan M"},{"last_name":"Klute","first_name":"Fabian","full_name":"Klute, Fabian"},{"first_name":"Irene","last_name":"Parada","full_name":"Parada, Irene"},{"last_name":"Vogtenhuber","first_name":"Birgit","full_name":"Vogtenhuber, Birgit"},{"last_name":"Seidel","first_name":"Raimund","full_name":"Seidel, Raimund"},{"last_name":"Wiedera","first_name":"Tilo","full_name":"Wiedera, Tilo"}],"quality_controlled":"1","citation":{"apa":"Arroyo Guevara, A. M., Klute, F., Parada, I., Vogtenhuber, B., Seidel, R., &#38; Wiedera, T. (2023). Inserting one edge into a simple drawing is hard. <i>Discrete and Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-022-00394-9\">https://doi.org/10.1007/s00454-022-00394-9</a>","mla":"Arroyo Guevara, Alan M., et al. “Inserting One Edge into a Simple Drawing Is Hard.” <i>Discrete and Computational Geometry</i>, vol. 69, Springer Nature, 2023, pp. 745–770, doi:<a href=\"https://doi.org/10.1007/s00454-022-00394-9\">10.1007/s00454-022-00394-9</a>.","ama":"Arroyo Guevara AM, Klute F, Parada I, Vogtenhuber B, Seidel R, Wiedera T. Inserting one edge into a simple drawing is hard. <i>Discrete and Computational Geometry</i>. 2023;69:745–770. doi:<a href=\"https://doi.org/10.1007/s00454-022-00394-9\">10.1007/s00454-022-00394-9</a>","ieee":"A. M. Arroyo Guevara, F. Klute, I. Parada, B. Vogtenhuber, R. Seidel, and T. Wiedera, “Inserting one edge into a simple drawing is hard,” <i>Discrete and Computational Geometry</i>, vol. 69. Springer Nature, pp. 745–770, 2023.","ista":"Arroyo Guevara AM, Klute F, Parada I, Vogtenhuber B, Seidel R, Wiedera T. 2023. Inserting one edge into a simple drawing is hard. Discrete and Computational Geometry. 69, 745–770.","short":"A.M. Arroyo Guevara, F. Klute, I. Parada, B. Vogtenhuber, R. Seidel, T. Wiedera, Discrete and Computational Geometry 69 (2023) 745–770.","chicago":"Arroyo Guevara, Alan M, Fabian Klute, Irene Parada, Birgit Vogtenhuber, Raimund Seidel, and Tilo Wiedera. “Inserting One Edge into a Simple Drawing Is Hard.” <i>Discrete and Computational Geometry</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00454-022-00394-9\">https://doi.org/10.1007/s00454-022-00394-9</a>."},"year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"intvolume":"        69","status":"public","date_created":"2022-08-28T22:02:01Z","month":"04","volume":69,"article_type":"original","publisher":"Springer Nature","file_date_updated":"2022-08-29T11:23:15Z"},{"page":"277-295","date_published":"2023-01-01T00:00:00Z","file":[{"relation":"main_file","date_created":"2023-01-20T10:02:48Z","content_type":"application/pdf","creator":"dernst","file_size":911017,"success":1,"date_updated":"2023-01-20T10:02:48Z","file_id":"12322","file_name":"2023_Algorithmica_Edelsbrunner.pdf","checksum":"71685ca5121f4c837f40c3f8eb50c915","access_level":"open_access"}],"external_id":{"isi":["000846967100001"]},"publication_identifier":{"issn":["0178-4617"],"eissn":["1432-0541"]},"scopus_import":"1","article_processing_charge":"Yes (via OA deal)","user_id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","day":"01","type":"journal_article","date_updated":"2023-06-27T12:53:43Z","oa_version":"Published Version","doi":"10.1007/s00453-022-01027-6","language":[{"iso":"eng"}],"department":[{"_id":"HeEd"}],"has_accepted_license":"1","ec_funded":1,"acknowledgement":"Open access funding provided by Austrian Science Fund (FWF). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, Grant No. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35.","volume":85,"article_type":"original","publisher":"Springer Nature","file_date_updated":"2023-01-20T10:02:48Z","isi":1,"intvolume":"        85","status":"public","date_created":"2022-09-11T22:01:57Z","month":"01","author":[{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","first_name":"Herbert"},{"last_name":"Osang","first_name":"Georg F","id":"464B40D6-F248-11E8-B48F-1D18A9856A87","full_name":"Osang, Georg F"}],"quality_controlled":"1","citation":{"short":"H. Edelsbrunner, G.F. Osang, Algorithmica 85 (2023) 277–295.","chicago":"Edelsbrunner, Herbert, and Georg F Osang. “A Simple Algorithm for Higher-Order Delaunay Mosaics and Alpha Shapes.” <i>Algorithmica</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00453-022-01027-6\">https://doi.org/10.1007/s00453-022-01027-6</a>.","ista":"Edelsbrunner H, Osang GF. 2023. A simple algorithm for higher-order Delaunay mosaics and alpha shapes. Algorithmica. 85, 277–295.","ama":"Edelsbrunner H, Osang GF. A simple algorithm for higher-order Delaunay mosaics and alpha shapes. <i>Algorithmica</i>. 2023;85:277-295. doi:<a href=\"https://doi.org/10.1007/s00453-022-01027-6\">10.1007/s00453-022-01027-6</a>","ieee":"H. Edelsbrunner and G. F. Osang, “A simple algorithm for higher-order Delaunay mosaics and alpha shapes,” <i>Algorithmica</i>, vol. 85. Springer Nature, pp. 277–295, 2023.","apa":"Edelsbrunner, H., &#38; Osang, G. F. (2023). A simple algorithm for higher-order Delaunay mosaics and alpha shapes. <i>Algorithmica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00453-022-01027-6\">https://doi.org/10.1007/s00453-022-01027-6</a>","mla":"Edelsbrunner, Herbert, and Georg F. Osang. “A Simple Algorithm for Higher-Order Delaunay Mosaics and Alpha Shapes.” <i>Algorithmica</i>, vol. 85, Springer Nature, 2023, pp. 277–95, doi:<a href=\"https://doi.org/10.1007/s00453-022-01027-6\">10.1007/s00453-022-01027-6</a>."},"year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["510"],"oa":1,"_id":"12086","title":"A simple algorithm for higher-order Delaunay mosaics and alpha shapes","publication":"Algorithmica","publication_status":"published","abstract":[{"text":"We present a simple algorithm for computing higher-order Delaunay mosaics that works in Euclidean spaces of any finite dimensions. The algorithm selects the vertices of the order-k mosaic from incrementally constructed lower-order mosaics and uses an algorithm for weighted first-order Delaunay mosaics as a black-box to construct the order-k mosaic from its vertices. Beyond this black-box, the algorithm uses only combinatorial operations, thus facilitating easy implementation. We extend this algorithm to compute higher-order α-shapes and provide open-source implementations. We present experimental results for properties of higher-order Delaunay mosaics of random point sets.","lang":"eng"}],"project":[{"name":"Alpha Shape Theory Extended","grant_number":"788183","call_identifier":"H2020","_id":"266A2E9E-B435-11E9-9278-68D0E5697425"},{"grant_number":"Z00342","name":"The Wittgenstein Prize","call_identifier":"FWF","_id":"268116B8-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes","grant_number":"I02979-N35"}]},{"external_id":{"isi":["000837499800002"],"arxiv":["2105.08303"]},"file":[{"content_type":"application/pdf","creator":"dernst","file_size":554871,"relation":"main_file","date_created":"2023-08-14T11:38:28Z","checksum":"8c7b185eba5ccd92ef55c120f654222c","file_name":"2023_AnnalesHenriPoincare_Wirth.pdf","access_level":"open_access","success":1,"date_updated":"2023-08-14T11:38:28Z","file_id":"14051"}],"date_published":"2023-03-01T00:00:00Z","page":"717-750","scopus_import":"1","publication_identifier":{"issn":["1424-0637"]},"arxiv":1,"article_processing_charge":"Yes (via OA deal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","date_updated":"2023-08-14T11:39:28Z","type":"journal_article","day":"01","ec_funded":1,"has_accepted_license":"1","department":[{"_id":"JaMa"}],"doi":"10.1007/s00023-022-01220-x","language":[{"iso":"eng"}],"acknowledgement":"H.Z. is supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411 and the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337. M.W. acknowledges support from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 716117) and from the Austrian Science Fund (FWF) through grant number F65. Both authors would like to thank Jan Maas for fruitful discussions and helpful comments. Open access funding provided by Austrian Science Fund (FWF).","volume":24,"file_date_updated":"2023-08-14T11:38:28Z","article_type":"original","publisher":"Springer Nature","intvolume":"        24","isi":1,"month":"03","date_created":"2022-09-11T22:01:57Z","status":"public","citation":{"ista":"Wirth M, Zhang H. 2023. Curvature-dimension conditions for symmetric quantum Markov semigroups. Annales Henri Poincare. 24, 717–750.","chicago":"Wirth, Melchior, and Haonan Zhang. “Curvature-Dimension Conditions for Symmetric Quantum Markov Semigroups.” <i>Annales Henri Poincare</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00023-022-01220-x\">https://doi.org/10.1007/s00023-022-01220-x</a>.","short":"M. Wirth, H. Zhang, Annales Henri Poincare 24 (2023) 717–750.","ieee":"M. Wirth and H. Zhang, “Curvature-dimension conditions for symmetric quantum Markov semigroups,” <i>Annales Henri Poincare</i>, vol. 24. Springer Nature, pp. 717–750, 2023.","ama":"Wirth M, Zhang H. Curvature-dimension conditions for symmetric quantum Markov semigroups. <i>Annales Henri Poincare</i>. 2023;24:717-750. doi:<a href=\"https://doi.org/10.1007/s00023-022-01220-x\">10.1007/s00023-022-01220-x</a>","mla":"Wirth, Melchior, and Haonan Zhang. “Curvature-Dimension Conditions for Symmetric Quantum Markov Semigroups.” <i>Annales Henri Poincare</i>, vol. 24, Springer Nature, 2023, pp. 717–50, doi:<a href=\"https://doi.org/10.1007/s00023-022-01220-x\">10.1007/s00023-022-01220-x</a>.","apa":"Wirth, M., &#38; Zhang, H. (2023). Curvature-dimension conditions for symmetric quantum Markov semigroups. <i>Annales Henri Poincare</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00023-022-01220-x\">https://doi.org/10.1007/s00023-022-01220-x</a>"},"quality_controlled":"1","author":[{"full_name":"Wirth, Melchior","orcid":"0000-0002-0519-4241","id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","first_name":"Melchior","last_name":"Wirth"},{"first_name":"Haonan","last_name":"Zhang","full_name":"Zhang, Haonan","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","title":"Curvature-dimension conditions for symmetric quantum Markov semigroups","publication":"Annales Henri Poincare","_id":"12087","oa":1,"ddc":["510"],"project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"_id":"eb958bca-77a9-11ec-83b8-c565cb50d8d6","grant_number":"M03337","name":"Curvature-dimension in noncommutative analysis"},{"name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"Taming Complexity in Partial Differential Systems","grant_number":"F6504","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"}],"abstract":[{"lang":"eng","text":"Following up on the recent work on lower Ricci curvature bounds for quantum systems, we introduce two noncommutative versions of curvature-dimension bounds for symmetric quantum Markov semigroups over matrix algebras. Under suitable such curvature-dimension conditions, we prove a family of dimension-dependent functional inequalities, a version of the Bonnet–Myers theorem and concavity of entropy power in the noncommutative setting. We also provide examples satisfying certain curvature-dimension conditions, including Schur multipliers over matrix algebras, Herz–Schur multipliers over group algebras and generalized depolarizing semigroups."}],"publication_status":"published"},{"file_date_updated":"2023-01-20T10:45:06Z","publisher":"Springer Nature","article_type":"original","volume":23,"issue":"1","month":"01","date_created":"2023-01-08T23:00:53Z","article_number":"9","status":"public","intvolume":"        23","isi":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","citation":{"apa":"Dello Schiavo, L., &#38; Wirth, M. (2023). Ergodic decompositions of Dirichlet forms under order isomorphisms. <i>Journal of Evolution Equations</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00028-022-00859-7\">https://doi.org/10.1007/s00028-022-00859-7</a>","mla":"Dello Schiavo, Lorenzo, and Melchior Wirth. “Ergodic Decompositions of Dirichlet Forms under Order Isomorphisms.” <i>Journal of Evolution Equations</i>, vol. 23, no. 1, 9, Springer Nature, 2023, doi:<a href=\"https://doi.org/10.1007/s00028-022-00859-7\">10.1007/s00028-022-00859-7</a>.","ista":"Dello Schiavo L, Wirth M. 2023. Ergodic decompositions of Dirichlet forms under order isomorphisms. Journal of Evolution Equations. 23(1), 9.","short":"L. Dello Schiavo, M. Wirth, Journal of Evolution Equations 23 (2023).","chicago":"Dello Schiavo, Lorenzo, and Melchior Wirth. “Ergodic Decompositions of Dirichlet Forms under Order Isomorphisms.” <i>Journal of Evolution Equations</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1007/s00028-022-00859-7\">https://doi.org/10.1007/s00028-022-00859-7</a>.","ama":"Dello Schiavo L, Wirth M. Ergodic decompositions of Dirichlet forms under order isomorphisms. <i>Journal of Evolution Equations</i>. 2023;23(1). doi:<a href=\"https://doi.org/10.1007/s00028-022-00859-7\">10.1007/s00028-022-00859-7</a>","ieee":"L. Dello Schiavo and M. Wirth, “Ergodic decompositions of Dirichlet forms under order isomorphisms,” <i>Journal of Evolution Equations</i>, vol. 23, no. 1. Springer Nature, 2023."},"quality_controlled":"1","author":[{"last_name":"Dello Schiavo","first_name":"Lorenzo","full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E"},{"id":"88644358-0A0E-11EA-8FA5-49A33DDC885E","full_name":"Wirth, Melchior","orcid":"0000-0002-0519-4241","first_name":"Melchior","last_name":"Wirth"}],"project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"Configuration Spaces over Non-Smooth Spaces","grant_number":"E208","_id":"34dbf174-11ca-11ed-8bc3-afe9d43d4b9c"},{"name":"Gradient flow techniques for quantum Markov semigroups","grant_number":"ESP156_N","_id":"34c6ea2d-11ca-11ed-8bc3-c04f3c502833"}],"abstract":[{"lang":"eng","text":"We study ergodic decompositions of Dirichlet spaces under intertwining via unitary order isomorphisms. We show that the ergodic decomposition of a quasi-regular Dirichlet space is unique up to a unique isomorphism of the indexing space. Furthermore, every unitary order isomorphism intertwining two quasi-regular Dirichlet spaces is decomposable over their ergodic decompositions up to conjugation via an isomorphism of the corresponding indexing spaces."}],"publication_status":"published","publication":"Journal of Evolution Equations","title":"Ergodic decompositions of Dirichlet forms under order isomorphisms","_id":"12104","oa":1,"ddc":["510"],"file":[{"relation":"main_file","date_created":"2023-01-20T10:45:06Z","creator":"dernst","content_type":"application/pdf","file_size":422612,"success":1,"date_updated":"2023-01-20T10:45:06Z","file_id":"12325","checksum":"1f34f3e2cb521033de6154f274ea3a4e","file_name":"2023_JourEvolutionEquations_DelloSchiavo.pdf","access_level":"open_access"}],"external_id":{"isi":["000906214600004"]},"date_published":"2023-01-01T00:00:00Z","scopus_import":"1","publication_identifier":{"issn":["1424-3199"],"eissn":["1424-3202"]},"oa_version":"Published Version","date_updated":"2023-06-28T11:54:35Z","type":"journal_article","day":"01","article_processing_charge":"Yes (via OA deal)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"Research supported by the Austrian Science Fund (FWF) grant F65 at the Institute of Science and Technology Austria and by the European Research Council (ERC) (Grant agreement No. 716117 awarded to Prof. Dr. Jan Maas). L.D.S. gratefully acknowledges funding of his current position by the Austrian Science Fund (FWF) through the ESPRIT Programme (Grant No. 208). M.W. gratefully acknowledges funding of his current position by the Austrian Science Fund (FWF) through the ESPRIT Programme (Grant No. 156).","ec_funded":1,"has_accepted_license":"1","department":[{"_id":"JaMa"}],"doi":"10.1007/s00028-022-00859-7","language":[{"iso":"eng"}]},{"volume":954,"article_type":"original","publisher":"Cambridge University Press","file_date_updated":"2023-02-02T12:34:54Z","isi":1,"intvolume":"       954","status":"public","article_number":"A10","month":"01","date_created":"2023-01-08T23:00:53Z","author":[{"id":"0BE7553A-1004-11EA-B805-18983DDC885E","full_name":"Marensi, Elena","first_name":"Elena","last_name":"Marensi"},{"last_name":"Yalniz","first_name":"Gökhan","id":"66E74FA2-D8BF-11E9-8249-8DE2E5697425","full_name":"Yalniz, Gökhan","orcid":"0000-0002-8490-9312"},{"id":"3A374330-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2057-2754","full_name":"Hof, Björn","first_name":"Björn","last_name":"Hof"},{"last_name":"Budanur","first_name":"Nazmi B","full_name":"Budanur, Nazmi B","orcid":"0000-0003-0423-5010","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87"}],"quality_controlled":"1","citation":{"mla":"Marensi, Elena, et al. “Symmetry-Reduced Dynamic Mode Decomposition of near-Wall Turbulence.” <i>Journal of Fluid Mechanics</i>, vol. 954, A10, Cambridge University Press, 2023, doi:<a href=\"https://doi.org/10.1017/jfm.2022.1001\">10.1017/jfm.2022.1001</a>.","apa":"Marensi, E., Yalniz, G., Hof, B., &#38; Budanur, N. B. (2023). Symmetry-reduced dynamic mode decomposition of near-wall turbulence. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2022.1001\">https://doi.org/10.1017/jfm.2022.1001</a>","ieee":"E. Marensi, G. Yalniz, B. Hof, and N. B. Budanur, “Symmetry-reduced dynamic mode decomposition of near-wall turbulence,” <i>Journal of Fluid Mechanics</i>, vol. 954. Cambridge University Press, 2023.","ama":"Marensi E, Yalniz G, Hof B, Budanur NB. Symmetry-reduced dynamic mode decomposition of near-wall turbulence. <i>Journal of Fluid Mechanics</i>. 2023;954. doi:<a href=\"https://doi.org/10.1017/jfm.2022.1001\">10.1017/jfm.2022.1001</a>","ista":"Marensi E, Yalniz G, Hof B, Budanur NB. 2023. Symmetry-reduced dynamic mode decomposition of near-wall turbulence. Journal of Fluid Mechanics. 954, A10.","chicago":"Marensi, Elena, Gökhan Yalniz, Björn Hof, and Nazmi B Budanur. “Symmetry-Reduced Dynamic Mode Decomposition of near-Wall Turbulence.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2023. <a href=\"https://doi.org/10.1017/jfm.2022.1001\">https://doi.org/10.1017/jfm.2022.1001</a>.","short":"E. Marensi, G. Yalniz, B. Hof, N.B. Budanur, Journal of Fluid Mechanics 954 (2023)."},"year":"2023","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"_id":"12105","oa":1,"ddc":["530"],"publication":"Journal of Fluid Mechanics","title":"Symmetry-reduced dynamic mode decomposition of near-wall turbulence","abstract":[{"lang":"eng","text":"Data-driven dimensionality reduction methods such as proper orthogonal decomposition and dynamic mode decomposition have proven to be useful for exploring complex phenomena within fluid dynamics and beyond. A well-known challenge for these techniques is posed by the continuous symmetries, e.g. translations and rotations, of the system under consideration, as drifts in the data dominate the modal expansions without providing an insight into the dynamics of the problem. In the present study, we address this issue for fluid flows in rectangular channels by formulating a continuous symmetry reduction method that eliminates the translations in the streamwise and spanwise directions simultaneously. We demonstrate our method by computing the symmetry-reduced dynamic mode decomposition (SRDMD) of sliding windows of data obtained from the transitional plane-Couette and turbulent plane-Poiseuille flow simulations. In the former setting, SRDMD captures the dynamics in the vicinity of the invariant solutions with translation symmetries, i.e. travelling waves and relative periodic orbits, whereas in the latter, our calculations reveal episodes of turbulent time evolution that can be approximated by a low-dimensional linear expansion."}],"publication_status":"published","project":[{"_id":"238598C6-32DE-11EA-91FC-C7463DDC885E","name":"Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental Studies on Transitional and Turbulent Flows","grant_number":"662960"}],"file":[{"file_id":"12489","date_updated":"2023-02-02T12:34:54Z","success":1,"access_level":"open_access","checksum":"9224f987caefe5dd85a70814d3cce65c","file_name":"2023_JourFluidMechanics_Marensi.pdf","date_created":"2023-02-02T12:34:54Z","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":1931647}],"external_id":{"isi":["000903336600001"],"arxiv":["2101.07516"]},"date_published":"2023-01-10T00:00:00Z","scopus_import":"1","publication_identifier":{"eissn":["1469-7645"],"issn":["0022-1120"]},"arxiv":1,"article_processing_charge":"Yes (via OA deal)","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","day":"10","oa_version":"Published Version","type":"journal_article","date_updated":"2023-08-01T12:53:23Z","department":[{"_id":"BjHo"}],"has_accepted_license":"1","doi":"10.1017/jfm.2022.1001","language":[{"iso":"eng"}],"acknowledgement":"E.M. acknowledges funding from the ISTplus fellowship programme. G.Y. and B.H. acknowledge\r\na grant from the Simons Foundation (662960, BH)."},{"file_date_updated":"2023-08-16T11:30:45Z","publisher":"Springer Nature","article_type":"original","volume":41,"date_created":"2023-01-08T23:00:53Z","month":"06","status":"public","intvolume":"        41","isi":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2023","citation":{"mla":"Yeung, Jake, et al. “ScChIX-Seq Infers Dynamic Relationships between Histone Modifications in Single Cells.” <i>Nature Biotechnology</i>, vol. 41, Springer Nature, 2023, pp. 813–823, doi:<a href=\"https://doi.org/10.1038/s41587-022-01560-3\">10.1038/s41587-022-01560-3</a>.","apa":"Yeung, J., Florescu, M., Zeller, P., De Barbanson, B. A., Wellenstein, M. D., &#38; Van Oudenaarden, A. (2023). scChIX-seq infers dynamic relationships between histone modifications in single cells. <i>Nature Biotechnology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41587-022-01560-3\">https://doi.org/10.1038/s41587-022-01560-3</a>","ista":"Yeung J, Florescu M, Zeller P, De Barbanson BA, Wellenstein MD, Van Oudenaarden A. 2023. scChIX-seq infers dynamic relationships between histone modifications in single cells. Nature Biotechnology. 41, 813–823.","short":"J. Yeung, M. Florescu, P. Zeller, B.A. De Barbanson, M.D. Wellenstein, A. Van Oudenaarden, Nature Biotechnology 41 (2023) 813–823.","chicago":"Yeung, Jake, Maria Florescu, Peter Zeller, Buys Anton De Barbanson, Max D. Wellenstein, and Alexander Van Oudenaarden. “ScChIX-Seq Infers Dynamic Relationships between Histone Modifications in Single Cells.” <i>Nature Biotechnology</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1038/s41587-022-01560-3\">https://doi.org/10.1038/s41587-022-01560-3</a>.","ama":"Yeung J, Florescu M, Zeller P, De Barbanson BA, Wellenstein MD, Van Oudenaarden A. scChIX-seq infers dynamic relationships between histone modifications in single cells. <i>Nature Biotechnology</i>. 2023;41:813–823. doi:<a href=\"https://doi.org/10.1038/s41587-022-01560-3\">10.1038/s41587-022-01560-3</a>","ieee":"J. Yeung, M. Florescu, P. Zeller, B. A. De Barbanson, M. D. Wellenstein, and A. Van Oudenaarden, “scChIX-seq infers dynamic relationships between histone modifications in single cells,” <i>Nature Biotechnology</i>, vol. 41. Springer Nature, pp. 813–823, 2023."},"author":[{"last_name":"Yeung","first_name":"Jake","id":"123012b2-db30-11eb-b4d8-a35840c0551b","full_name":"Yeung, Jake","orcid":"0000-0003-1732-1559"},{"first_name":"Maria","last_name":"Florescu","full_name":"Florescu, Maria"},{"last_name":"Zeller","first_name":"Peter","full_name":"Zeller, Peter"},{"last_name":"De Barbanson","first_name":"Buys Anton","full_name":"De Barbanson, Buys Anton"},{"first_name":"Max D.","last_name":"Wellenstein","full_name":"Wellenstein, Max D."},{"first_name":"Alexander","last_name":"Van Oudenaarden","full_name":"Van Oudenaarden, Alexander"}],"quality_controlled":"1","publication_status":"published","abstract":[{"text":"Regulation of chromatin states involves the dynamic interplay between different histone modifications to control gene expression. Recent advances have enabled mapping of histone marks in single cells, but most methods are constrained to profile only one histone mark per cell. Here, we present an integrated experimental and computational framework, scChIX-seq (single-cell chromatin immunocleavage and unmixing sequencing), to map several histone marks in single cells. scChIX-seq multiplexes two histone marks together in single cells, then computationally deconvolves the signal using training data from respective histone mark profiles. This framework learns the cell-type-specific correlation structure between histone marks, and therefore does not require a priori assumptions of their genomic distributions. Using scChIX-seq, we demonstrate multimodal analysis of histone marks in single cells across a range of mark combinations. Modeling dynamics of in vitro macrophage differentiation enables integrated analysis of chromatin velocity. Overall, scChIX-seq unlocks systematic interrogation of the interplay between histone modifications in single cells.","lang":"eng"}],"title":"scChIX-seq infers dynamic relationships between histone modifications in single cells","publication":"Nature Biotechnology","ddc":["570"],"oa":1,"_id":"12106","date_published":"2023-06-01T00:00:00Z","external_id":{"isi":["000909067600003"]},"file":[{"file_id":"14066","date_updated":"2023-08-16T11:30:45Z","success":1,"access_level":"open_access","file_name":"2023_NatureBioTech_Yeung.pdf","checksum":"668447a1c8d360b68f8aaf9e08ed644f","date_created":"2023-08-16T11:30:45Z","relation":"main_file","file_size":12040976,"creator":"dernst","content_type":"application/pdf"}],"page":"813–823","publication_identifier":{"eissn":["1546-1696"],"issn":["1087-0156"]},"scopus_import":"1","date_updated":"2023-08-16T11:32:33Z","type":"journal_article","oa_version":"Published Version","day":"01","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank M. van Loenhout for experimental advice on purifying cell types from the bone marrow, R. van der Linden for expertise with FACS and M. Blotenburg for help with cell typing the mouse organogenesis dataset. We thank M. Saraswat and O. Stegle for discussions on multinomial distributions. This work was supported by a European Research Council Advanced grant (ERC-AdG 742225-IntScOmics); Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) TOP grant (NWO CW 714.016.001) and NWO grant (OCENW.GROOT.2019.017); the Swiss National Science Foundation Early Postdoc Mobility (P2ELP3-184488 to P.Z. and P2BSP3-174991 to J.Y.); Marie Sklodowska-Curie Actions Postdoc (798573 to P.Z.) and the Human Frontier for Science Program Long-Term Fellowships (LT000209-2018-L to P.Z. and LT000097-2019-L to J.Y.). This work is part of the Oncode Institute which is financed partly by the Dutch Cancer Society.","language":[{"iso":"eng"}],"doi":"10.1038/s41587-022-01560-3","department":[{"_id":"ScienComp"}],"has_accepted_license":"1"},{"publication_identifier":{"issn":["0169-4332"]},"scopus_import":"1","date_published":"2023-03-15T00:00:00Z","keyword":["Surfaces","Coatings and Films","Condensed Matter Physics","Surfaces and Interfaces","General Physics and Astronomy","General Chemistry"],"external_id":{"isi":["000911497000001"]},"acknowledgement":"Scientific Research Program Funded by Shaanxi Provincial Education Department (Program No.22JY012), Natural Science Basic Research Program of Shaanxi (Grant No.2022JZ-31), Young Talent fund of University Association for Science and Technology in Shaanxi, China (Grant No.20210411), China Postdoctoral Science Foundation (Grant No. 2021M692621), the Foundation of Shaanxi University of Science & Technology (Grant No. 2017GBJ-03), Open Foundation of Key Laboratory of Auxiliary Chemistry and Technology for Chemical Industry, Ministry of Education, Shaanxi University of Science and Technology (Grant No. KFKT2022-15), and Open Foundation of Shaanxi Collaborative Innovation Center of Industrial Auxiliary Chemistry and Technology, Shaanxi University of Science and Technology (Grant No. KFKT2022-15).","language":[{"iso":"eng"}],"doi":"10.1016/j.apsusc.2022.156101","department":[{"_id":"MaIb"}],"day":"15","type":"journal_article","date_updated":"2023-08-14T11:47:06Z","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","status":"public","article_number":"156101","date_created":"2023-01-12T11:55:02Z","month":"03","isi":1,"intvolume":"       613","publisher":"Elsevier","article_type":"original","volume":613,"publication_status":"epub_ahead","abstract":[{"text":"The power factor of poly(3,4-ethylenedioxythiophene):poly(styrene sulfonate) (PEDOT:PSS) film can be significantly improved by optimizing the oxidation level of the film in oxidation and reduction processes. However, precise control over the oxidation and reduction effects in PEDOT:PSS remains a challenge, which greatly sacrifices both S and σ. Here, we propose a two-step post-treatment using a mixture of ethylene glycol (EG) and Arginine (Arg) and sulfuric acid (H2SO4) in sequence to engineer high-performance PEDOT:PSS thermoelectric films. The high-polarity EG dopant removes the excess non-ionized PSS and induces benzenoid-to-quinoid conformational change in the PEDOT:PSS films. In particular, basic amino acid Arg tunes the oxidation level of PEDOT:PSS and prevents the films from over-oxidation during H2SO4 post-treatment, leading to increased S. The following H2SO4 post-treatment further induces highly orientated lamellar stacking microstructures to increase σ, yielding a maximum power factor of 170.6 μW m−1 K−2 at 460 K. Moreover, a novel trigonal-shape thermoelectric device is designed and assembled by the as-prepared PEDOT:PSS films in order to harvest heat via a vertical temperature gradient. An output power density of 33 μW cm−2 is generated at a temperature difference of 40 K, showing the potential application for low-grade wearable electronic devices.","lang":"eng"}],"_id":"12113","title":"Two-step post-treatment to deliver high performance thermoelectric device with vertical temperature gradient","publication":"Applied Surface Science","year":"2023","author":[{"full_name":"Zhang, Li","first_name":"Li","last_name":"Zhang"},{"last_name":"Liu","first_name":"Xingyu","full_name":"Liu, Xingyu"},{"first_name":"Ting","last_name":"Wu","full_name":"Wu, Ting"},{"last_name":"Xu","first_name":"Shengduo","full_name":"Xu, Shengduo","id":"12ab8624-4c8a-11ec-9e11-e1ac2438f22f"},{"full_name":"Suo, Guoquan","first_name":"Guoquan","last_name":"Suo"},{"full_name":"Ye, Xiaohui","first_name":"Xiaohui","last_name":"Ye"},{"full_name":"Hou, Xiaojiang","first_name":"Xiaojiang","last_name":"Hou"},{"last_name":"Yang","first_name":"Yanling","full_name":"Yang, Yanling"},{"full_name":"Liu, Qingfeng","first_name":"Qingfeng","last_name":"Liu"},{"last_name":"Wang","first_name":"Hongqiang","full_name":"Wang, Hongqiang"}],"quality_controlled":"1","citation":{"mla":"Zhang, Li, et al. “Two-Step Post-Treatment to Deliver High Performance Thermoelectric Device with Vertical Temperature Gradient.” <i>Applied Surface Science</i>, vol. 613, 156101, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.apsusc.2022.156101\">10.1016/j.apsusc.2022.156101</a>.","apa":"Zhang, L., Liu, X., Wu, T., Xu, S., Suo, G., Ye, X., … Wang, H. (2023). Two-step post-treatment to deliver high performance thermoelectric device with vertical temperature gradient. <i>Applied Surface Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.apsusc.2022.156101\">https://doi.org/10.1016/j.apsusc.2022.156101</a>","chicago":"Zhang, Li, Xingyu Liu, Ting Wu, Shengduo Xu, Guoquan Suo, Xiaohui Ye, Xiaojiang Hou, Yanling Yang, Qingfeng Liu, and Hongqiang Wang. “Two-Step Post-Treatment to Deliver High Performance Thermoelectric Device with Vertical Temperature Gradient.” <i>Applied Surface Science</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.apsusc.2022.156101\">https://doi.org/10.1016/j.apsusc.2022.156101</a>.","short":"L. Zhang, X. Liu, T. Wu, S. Xu, G. Suo, X. Ye, X. Hou, Y. Yang, Q. Liu, H. Wang, Applied Surface Science 613 (2023).","ista":"Zhang L, Liu X, Wu T, Xu S, Suo G, Ye X, Hou X, Yang Y, Liu Q, Wang H. 2023. Two-step post-treatment to deliver high performance thermoelectric device with vertical temperature gradient. Applied Surface Science. 613, 156101.","ieee":"L. Zhang <i>et al.</i>, “Two-step post-treatment to deliver high performance thermoelectric device with vertical temperature gradient,” <i>Applied Surface Science</i>, vol. 613. Elsevier, 2023.","ama":"Zhang L, Liu X, Wu T, et al. Two-step post-treatment to deliver high performance thermoelectric device with vertical temperature gradient. <i>Applied Surface Science</i>. 2023;613. doi:<a href=\"https://doi.org/10.1016/j.apsusc.2022.156101\">10.1016/j.apsusc.2022.156101</a>"}},{"acknowledgement":"The NMR platform in Grenoble is part of the Grenoble Instruct-ERIC center (ISBG; UAR 3518 CNRS-CEA-UGA-EMBL) within the Grenoble Partnership for Structural Biology (PSB), supported by FRISBI (ANR-10-INBS-0005-02) and GRAL, financed within the University Grenoble Alpes graduate school (Ecoles Universitaires de Recherche) CBH-EUR-GS (ANR-17-EURE-0003). This work was supported by the European Research Council (StG-2012-311318-ProtDyn2Function to P.S.) and used the platforms of the Grenoble Instruct Center (ISBG; UMS 3518 CNRS-CEA-UJF-EMBL) with support from FRISBI (ANR-10-INSB-05–02) and GRAL (ANR-10-LABX-49–01) within the Grenoble Partnership for Structural Biology (PSB). We would like to thank Sergei Izmailov for developing and maintaining the pyxmolpp2 library. N.R.S. acknowledges support from St. Petersburg State University in a form of the grant 92425251 and the access to the MRR, MCT and CAMR resource centers. P.S. thanks Malcolm Levitt for pointing out the fact that “tensor asymmetry” is better called “tensor biaxiality”.","has_accepted_license":"1","department":[{"_id":"PaSc"}],"language":[{"iso":"eng"}],"doi":"10.1016/j.yjsbx.2022.100079","oa_version":"Published Version","date_updated":"2023-08-16T09:37:25Z","type":"journal_article","day":"01","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","publication_identifier":{"issn":["2590-1524"]},"file":[{"creator":"dernst","content_type":"application/pdf","file_size":5132322,"date_created":"2023-08-16T09:36:28Z","relation":"main_file","access_level":"open_access","checksum":"b4b1c10a31018aafe053b7d55a470e54","file_name":"2023_JourStrucBiologyX_Gauto.pdf","file_id":"14064","date_updated":"2023-08-16T09:36:28Z","success":1}],"keyword":["Structural Biology"],"external_id":{"pmid":["36578472"]},"date_published":"2023-01-01T00:00:00Z","abstract":[{"lang":"eng","text":"Probing the dynamics of aromatic side chains provides important insights into the behavior of a protein because flips of aromatic rings in a protein’s hydrophobic core report on breathing motion involving a large part of the protein. Inherently invisible to crystallography, aromatic motions have been primarily studied by solution NMR. The question how packing of proteins in crystals affects ring flips has, thus, remained largely unexplored. Here we apply magic-angle spinning NMR, advanced phenylalanine 1H-13C/2H isotope labeling and MD simulation to a protein in three different crystal packing environments to shed light onto possible impact of packing on ring flips. The flips of the two Phe residues in ubiquitin, both surface exposed, appear remarkably conserved in the different crystal forms, even though the intermolecular packing is quite different: Phe4 flips on a ca. 10–20 ns time scale, and Phe45 are broadened in all crystals, presumably due to µs motion. Our findings suggest that intramolecular influences are more important for ring flips than intermolecular (packing) effects."}],"publication_status":"published","pmid":1,"publication":"Journal of Structural Biology: X","title":"Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD","_id":"12114","ddc":["570"],"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"},"year":"2023","citation":{"ieee":"D. F. Gauto <i>et al.</i>, “Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD,” <i>Journal of Structural Biology: X</i>, vol. 7. Elsevier, 2023.","ama":"Gauto DF, Lebedenko OO, Becker LM, et al. Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD. <i>Journal of Structural Biology: X</i>. 2023;7. doi:<a href=\"https://doi.org/10.1016/j.yjsbx.2022.100079\">10.1016/j.yjsbx.2022.100079</a>","ista":"Gauto DF, Lebedenko OO, Becker LM, Ayala I, Lichtenecker R, Skrynnikov NR, Schanda P. 2023. Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD. Journal of Structural Biology: X. 7, 100079.","short":"D.F. Gauto, O.O. Lebedenko, L.M. Becker, I. Ayala, R. Lichtenecker, N.R. Skrynnikov, P. Schanda, Journal of Structural Biology: X 7 (2023).","chicago":"Gauto, Diego F., Olga O. Lebedenko, Lea Marie Becker, Isabel Ayala, Roman Lichtenecker, Nikolai R. Skrynnikov, and Paul Schanda. “Aromatic Ring Flips in Differently Packed Ubiquitin Protein Crystals from MAS NMR and MD.” <i>Journal of Structural Biology: X</i>. Elsevier, 2023. <a href=\"https://doi.org/10.1016/j.yjsbx.2022.100079\">https://doi.org/10.1016/j.yjsbx.2022.100079</a>.","apa":"Gauto, D. F., Lebedenko, O. O., Becker, L. M., Ayala, I., Lichtenecker, R., Skrynnikov, N. R., &#38; Schanda, P. (2023). Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD. <i>Journal of Structural Biology: X</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.yjsbx.2022.100079\">https://doi.org/10.1016/j.yjsbx.2022.100079</a>","mla":"Gauto, Diego F., et al. “Aromatic Ring Flips in Differently Packed Ubiquitin Protein Crystals from MAS NMR and MD.” <i>Journal of Structural Biology: X</i>, vol. 7, 100079, Elsevier, 2023, doi:<a href=\"https://doi.org/10.1016/j.yjsbx.2022.100079\">10.1016/j.yjsbx.2022.100079</a>."},"author":[{"first_name":"Diego F.","last_name":"Gauto","full_name":"Gauto, Diego F."},{"full_name":"Lebedenko, Olga O.","last_name":"Lebedenko","first_name":"Olga O."},{"last_name":"Becker","first_name":"Lea Marie","orcid":"0000-0002-6401-5151","full_name":"Becker, Lea Marie","id":"36336939-eb97-11eb-a6c2-c83f1214ca79"},{"full_name":"Ayala, Isabel","first_name":"Isabel","last_name":"Ayala"},{"full_name":"Lichtenecker, Roman","last_name":"Lichtenecker","first_name":"Roman"},{"last_name":"Skrynnikov","first_name":"Nikolai R.","full_name":"Skrynnikov, Nikolai R."},{"first_name":"Paul","last_name":"Schanda","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul","orcid":"0000-0002-9350-7606"}],"quality_controlled":"1","month":"01","date_created":"2023-01-12T11:55:38Z","status":"public","article_number":"100079","intvolume":"         7","file_date_updated":"2023-08-16T09:36:28Z","publisher":"Elsevier","article_type":"original","volume":7},{"publication_identifier":{"eissn":["1534-4681"],"issn":["1068-9265"]},"scopus_import":"1","date_published":"2023-01-01T00:00:00Z","external_id":{"isi":["000879151800001"]},"keyword":["Oncology","Surgery"],"page":"46-47","acknowledgement":"This work was supported by European Commission’s Seventh Framework Programme under Grant Agreement No. 279113 (OCTIPS; www.octips.eu).","doi":"10.1245/s10434-022-12681-z","language":[{"iso":"eng"}],"department":[{"_id":"JoDa"}],"type":"journal_article","date_updated":"2023-09-05T15:18:36Z","oa_version":"Published Version","day":"01","article_processing_charge":"No","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_created":"2023-01-12T11:56:22Z","month":"01","status":"public","intvolume":"        30","isi":1,"publisher":"Springer Nature","article_type":"original","volume":30,"publication_status":"published","publication":"Annals of Surgical Oncology","title":"ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium","oa":1,"related_material":{"record":[{"id":"12205","relation":"other","status":"public"}]},"_id":"12115","year":"2023","main_file_link":[{"url":"https://doi.org/10.1245/s10434-022-12681-z","open_access":"1"}],"citation":{"apa":"Glajzer, J., Castillo-Tong, D. C., Richter, R., Vergote, I., Kulbe, H., Vanderstichele, A., … Braicu, E. I. (2023). ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium. <i>Annals of Surgical Oncology</i>. Springer Nature. <a href=\"https://doi.org/10.1245/s10434-022-12681-z\">https://doi.org/10.1245/s10434-022-12681-z</a>","mla":"Glajzer, Jacek, et al. “ASO Visual Abstract: Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome, and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer (HGSOC). A Multicenter, Retrospective Study of the Ovarian Cancer Therapy—Innovative Models Prolong Survival (OCTIPS) Consortium.” <i>Annals of Surgical Oncology</i>, vol. 30, Springer Nature, 2023, pp. 46–47, doi:<a href=\"https://doi.org/10.1245/s10434-022-12681-z\">10.1245/s10434-022-12681-z</a>.","short":"J. Glajzer, D.C. Castillo-Tong, R. Richter, I. Vergote, H. Kulbe, A. Vanderstichele, I. Ruscito, F. Trillsch, A. Mustea, C. Kreuzinger, C. Gourley, H. Gabra, E.T. Taube, O. Dorigo, D. Horst, C. Keunecke, J. Baum, T. Angelotti, J. Sehouli, E.I. Braicu, Annals of Surgical Oncology 30 (2023) 46–47.","chicago":"Glajzer, Jacek, Dan Cacsire Castillo-Tong, Rolf Richter, Ignace Vergote, Hagen Kulbe, Adriaan Vanderstichele, Ilary Ruscito, et al. “ASO Visual Abstract: Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome, and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer (HGSOC). A Multicenter, Retrospective Study of the Ovarian Cancer Therapy—Innovative Models Prolong Survival (OCTIPS) Consortium.” <i>Annals of Surgical Oncology</i>. Springer Nature, 2023. <a href=\"https://doi.org/10.1245/s10434-022-12681-z\">https://doi.org/10.1245/s10434-022-12681-z</a>.","ista":"Glajzer J, Castillo-Tong DC, Richter R, Vergote I, Kulbe H, Vanderstichele A, Ruscito I, Trillsch F, Mustea A, Kreuzinger C, Gourley C, Gabra H, Taube ET, Dorigo O, Horst D, Keunecke C, Baum J, Angelotti T, Sehouli J, Braicu EI. 2023. ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium. Annals of Surgical Oncology. 30, 46–47.","ieee":"J. Glajzer <i>et al.</i>, “ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium,” <i>Annals of Surgical Oncology</i>, vol. 30. Springer Nature, pp. 46–47, 2023.","ama":"Glajzer J, Castillo-Tong DC, Richter R, et al. ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome, and patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS) consortium. <i>Annals of Surgical Oncology</i>. 2023;30:46-47. doi:<a href=\"https://doi.org/10.1245/s10434-022-12681-z\">10.1245/s10434-022-12681-z</a>"},"quality_controlled":"1","author":[{"first_name":"Jacek","last_name":"Glajzer","full_name":"Glajzer, Jacek"},{"full_name":"Castillo-Tong, Dan Cacsire","first_name":"Dan Cacsire","last_name":"Castillo-Tong"},{"full_name":"Richter, Rolf","first_name":"Rolf","last_name":"Richter"},{"first_name":"Ignace","last_name":"Vergote","full_name":"Vergote, Ignace"},{"full_name":"Kulbe, Hagen","first_name":"Hagen","last_name":"Kulbe"},{"full_name":"Vanderstichele, Adriaan","first_name":"Adriaan","last_name":"Vanderstichele"},{"full_name":"Ruscito, Ilary","last_name":"Ruscito","first_name":"Ilary"},{"full_name":"Trillsch, Fabian","first_name":"Fabian","last_name":"Trillsch"},{"full_name":"Mustea, Alexander","last_name":"Mustea","first_name":"Alexander"},{"last_name":"Kreuzinger","first_name":"Caroline","full_name":"Kreuzinger, Caroline","id":"382077BA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Gourley, Charlie","last_name":"Gourley","first_name":"Charlie"},{"last_name":"Gabra","first_name":"Hani","full_name":"Gabra, Hani"},{"full_name":"Taube, Eliane T.","last_name":"Taube","first_name":"Eliane T."},{"last_name":"Dorigo","first_name":"Oliver","full_name":"Dorigo, Oliver"},{"last_name":"Horst","first_name":"David","full_name":"Horst, David"},{"full_name":"Keunecke, Carlotta","last_name":"Keunecke","first_name":"Carlotta"},{"last_name":"Baum","first_name":"Joanna","full_name":"Baum, Joanna"},{"full_name":"Angelotti, Timothy","first_name":"Timothy","last_name":"Angelotti"},{"full_name":"Sehouli, Jalid","first_name":"Jalid","last_name":"Sehouli"},{"last_name":"Braicu","first_name":"Elena Ioana","full_name":"Braicu, Elena Ioana"}]},{"abstract":[{"text":"We study the time evolution of the Nelson model in a mean-field limit in which N nonrelativistic bosons weakly couple (with respect to the particle number) to a positive or zero mass quantized scalar field. Our main result is the derivation of the Bogoliubov dynamics and higher-order corrections. More precisely, we prove the convergence of the approximate wave function to the many-body wave function in norm, with a convergence rate proportional to the number of corrections taken into account in the approximation. We prove an analogous result for the unitary propagator. As an application, we derive a simple system of partial differential equations describing the time evolution of the first- and second-order approximations to the one-particle reduced density matrices of the particles and the quantum field, respectively.","lang":"eng"}],"publication_status":"published","_id":"12430","oa":1,"ddc":["510"],"title":"Bogoliubov dynamics and higher-order corrections for the regularized Nelson model","publication":"Reviews in Mathematical Physics","year":"2023","quality_controlled":"1","author":[{"full_name":"Falconi, Marco","last_name":"Falconi","first_name":"Marco"},{"last_name":"Leopold","first_name":"Nikolai K","id":"4BC40BEC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0495-6822","full_name":"Leopold, Nikolai K"},{"full_name":"Mitrouskas, David Johannes","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d","first_name":"David Johannes","last_name":"Mitrouskas"},{"id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","full_name":"Petrat, Sören P","orcid":"0000-0002-9166-5889","last_name":"Petrat","first_name":"Sören P"}],"main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2110.00458","open_access":"1"}],"citation":{"ista":"Falconi M, Leopold NK, Mitrouskas DJ, Petrat SP. 2023. Bogoliubov dynamics and higher-order corrections for the regularized Nelson model. Reviews in Mathematical Physics. 35(4), 2350006.","short":"M. Falconi, N.K. Leopold, D.J. Mitrouskas, S.P. Petrat, Reviews in Mathematical Physics 35 (2023).","chicago":"Falconi, Marco, Nikolai K Leopold, David Johannes Mitrouskas, and Sören P Petrat. “Bogoliubov Dynamics and Higher-Order Corrections for the Regularized Nelson Model.” <i>Reviews in Mathematical Physics</i>. World Scientific Publishing, 2023. <a href=\"https://doi.org/10.1142/S0129055X2350006X\">https://doi.org/10.1142/S0129055X2350006X</a>.","ieee":"M. Falconi, N. K. Leopold, D. J. Mitrouskas, and S. P. Petrat, “Bogoliubov dynamics and higher-order corrections for the regularized Nelson model,” <i>Reviews in Mathematical Physics</i>, vol. 35, no. 4. World Scientific Publishing, 2023.","ama":"Falconi M, Leopold NK, Mitrouskas DJ, Petrat SP. Bogoliubov dynamics and higher-order corrections for the regularized Nelson model. <i>Reviews in Mathematical Physics</i>. 2023;35(4). doi:<a href=\"https://doi.org/10.1142/S0129055X2350006X\">10.1142/S0129055X2350006X</a>","mla":"Falconi, Marco, et al. “Bogoliubov Dynamics and Higher-Order Corrections for the Regularized Nelson Model.” <i>Reviews in Mathematical Physics</i>, vol. 35, no. 4, 2350006, World Scientific Publishing, 2023, doi:<a href=\"https://doi.org/10.1142/S0129055X2350006X\">10.1142/S0129055X2350006X</a>.","apa":"Falconi, M., Leopold, N. K., Mitrouskas, D. J., &#38; Petrat, S. P. (2023). Bogoliubov dynamics and higher-order corrections for the regularized Nelson model. <i>Reviews in Mathematical Physics</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S0129055X2350006X\">https://doi.org/10.1142/S0129055X2350006X</a>"},"article_number":"2350006","status":"public","month":"01","date_created":"2023-01-29T23:00:59Z","isi":1,"intvolume":"        35","article_type":"original","publisher":"World Scientific Publishing","volume":35,"issue":"4","das_tickbox":"1","department":[{"_id":"RoSe"}],"language":[{"iso":"eng"}],"doi":"10.1142/S0129055X2350006X","day":"09","oa_version":"Preprint","type":"journal_article","date_updated":"2026-06-18T07:59:24Z","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1,"scopus_import":"1","publication_identifier":{"issn":["0129-055X"]},"external_id":{"isi":["000909760300001"],"arxiv":["2110.00458"]},"date_published":"2023-01-09T00:00:00Z"}]